AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577960 MtrunA17_Chr4g0000041 97.470 593 6 4 1 588 1 589 0.0 1169
Msa0577960 MtrunA17_Chr8g0379501 51.351 74 35 1 477 550 81 153 7.08e-14 70.9
Msa0577960 MtrunA17_Chr8g0379511 28.028 289 170 13 155 416 126 403 1.96e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577960 AT1G16720.1 83.034 501 85 0 88 588 98 598 0.0 872
Msa0577960 AT1G16720.2 77.903 534 85 1 88 588 98 631 0.0 855
Msa0577960 AT1G16720.3 82.289 463 82 0 88 550 98 560 0.0 798
Msa0577960 AT4G18810.1 29.694 458 255 23 139 550 113 549 2.62e-25 110
Msa0577960 AT4G18810.2 29.694 458 255 23 139 550 113 549 2.76e-25 110

Find 177 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACAACACTTTCACTTTC+AGG 0.166841 4_1:-82329475 Msa0577960:CDS
CGTTGTTGTCGTCGTCGTTT+TGG 0.174964 4_1:+82329320 None:intergenic
TAATCTATCTAAAGCATTTC+AGG 0.177804 4_1:-82328445 Msa0577960:CDS
ATTCTCAGTGAACTCAAATT+TGG 0.188350 4_1:+82328260 None:intergenic
CGTGCTTCCACGTACTAAAT+AGG 0.210340 4_1:+82329769 None:intergenic
TTTGTCTTAGTTTCATGTTC+TGG 0.244048 4_1:-82325803 Msa0577960:CDS
TTGGACATTACCTGTCTTCT+AGG 0.270556 4_1:+82327591 None:intergenic
CTATCACTGGTGATCTCTTC+AGG 0.274699 4_1:-82328488 Msa0577960:CDS
GAGAAGCTTTCAGCTAATAT+TGG 0.279017 4_1:-82326785 Msa0577960:CDS
ATTCTAGAAGCTGGTCCTTC+AGG 0.280246 4_1:-82327908 Msa0577960:CDS
GCCTTGGTATTGAGCCTTCC+AGG 0.286621 4_1:-82325781 Msa0577960:CDS
ACAGCAGCCTTGACTGTGTT+TGG 0.292381 4_1:+82328555 None:intergenic
TGTCAACTTCAAATCTGAAT+TGG 0.300935 4_1:+82329667 None:intergenic
ACCGGACGAAATGATGAAAA+TGG 0.315241 4_1:+82327675 None:intergenic
AGATATTACAGGGGACTAAT+TGG 0.315769 4_1:-82323573 Msa0577960:three_prime_UTR
TCTTTGCCATCCCTGGTGTT+TGG 0.318685 4_1:+82329358 None:intergenic
AAAGAAAATGTAGATATTAC+AGG 0.331116 4_1:-82323584 Msa0577960:three_prime_UTR
AACCCCTGAGCATGAGTTTA+CGG 0.337945 4_1:+82329035 None:intergenic
TTAGTTTCATGTTCTGGCCT+TGG 0.337954 4_1:-82325797 Msa0577960:CDS
GAAGATTCCTTGAGAAGATC+TGG 0.343993 4_1:-82325618 Msa0577960:CDS
CTTGCTGTCTTTGCCATCCC+TGG 0.353209 4_1:+82329351 None:intergenic
TCTCCAGGCCAGGGATGTTC+AGG 0.370394 4_1:+82324378 None:intergenic
TGCAAGAATTAGTACAAAAG+TGG 0.371055 4_1:-82327858 Msa0577960:CDS
GTTCTCTCTGTTGGCGGCAA+TGG 0.376433 4_1:-82327947 Msa0577960:CDS
AGTTCGTCCGGGTCCATTGC+AGG 0.386123 4_1:-82325580 Msa0577960:intron
GTTAATGTATGTACAAGAAA+AGG 0.389677 4_1:+82327627 None:intergenic
AAATTTGAGTTCACTGAGAA+TGG 0.390202 4_1:-82328258 Msa0577960:CDS
TAATCAGGTTGCCCACTTGC+CGG 0.392057 4_1:-82324452 Msa0577960:intron
ACAAGAAAAGGGTCTAAAAC+TGG 0.404655 4_1:+82327639 None:intergenic
GGACAACAATTCGACCTATA+CGG 0.404869 4_1:+82329056 None:intergenic
TTCTAGAAGCTGGTCCTTCA+GGG 0.411008 4_1:-82327907 Msa0577960:CDS
GGGTCTAAAACTGGATGATC+TGG 0.417511 4_1:+82327648 None:intergenic
TCATGATAGGTATGAGGGCT+TGG 0.424833 4_1:-82327969 Msa0577960:intron
AATACTACTGTACTTGTTGT+TGG 0.426072 4_1:-82329088 Msa0577960:CDS
CTGAATCTTCACTGGATGGA+TGG 0.426462 4_1:-82328347 Msa0577960:CDS
TTGGAGAAAATTCTCTGGAC+TGG 0.426876 4_1:-82329212 Msa0577960:CDS
CTGGACTGGGTCAGATCTCT+AGG 0.427807 4_1:-82329198 Msa0577960:CDS
GACTGACAACTGACAGGAAT+CGG 0.427951 4_1:+82329689 None:intergenic
GTTGGTGCTACTAGCCGTAT+AGG 0.435219 4_1:-82329070 Msa0577960:CDS
TGTTTCTTGCAGTTGAATCA+TGG 0.435790 4_1:+82324687 None:intergenic
GAGTGCCTTCACACATATAT+CGG 0.436679 4_1:+82324709 None:intergenic
TGGATACACAATAGTTCGTC+CGG 0.437257 4_1:-82325592 Msa0577960:CDS
AGATAGTTATTTGCTTTGTC+CGG 0.438211 4_1:+82324433 None:intergenic
ATTTAAATCTGAATCTTCAC+TGG 0.438895 4_1:-82328355 Msa0577960:CDS
TTAGGGTATGTCTTCAATAG+AGG 0.440898 4_1:-82328124 Msa0577960:intron
TTGTCCGTAAACTCATGCTC+AGG 0.442258 4_1:-82329039 Msa0577960:CDS
GGCAGATATTCGATGAGGTT+TGG 0.442586 4_1:-82329231 Msa0577960:CDS
TCAGGATCACAACAATCAAT+TGG 0.444558 4_1:-82328427 Msa0577960:CDS
GTGCTTCCACGTACTAAATA+GGG 0.444643 4_1:+82329770 None:intergenic
GCTGAAAGCTTCTCGAATCC+TGG 0.446728 4_1:+82326794 None:intergenic
GAGATAGTGATTGGGGATGT+TGG 0.447831 4_1:-82328582 Msa0577960:CDS
AACAAATGAACCTACCCTCT+TGG 0.448430 4_1:+82325739 None:intergenic
AATTGGCTCAGTTGCGCGCT+GGG 0.448540 4_1:-82328410 Msa0577960:CDS
GTGTTTGGAGCAGCGGCTAT+AGG 0.454033 4_1:+82329373 None:intergenic
ACAGTCAAGGCTGCTGTAGA+AGG 0.459186 4_1:-82328549 Msa0577960:CDS
GAGGTTTGGAGAAAATTCTC+TGG 0.460565 4_1:-82329217 Msa0577960:CDS
TCCTTGAGAAGATCTGGGCT+TGG 0.460859 4_1:-82325612 Msa0577960:CDS
ATGTGTGAGTTTGCCATCCC+TGG 0.462288 4_1:-82329118 Msa0577960:CDS
AGGTCAGTAGAGATAGTGAT+TGG 0.469344 4_1:-82328591 Msa0577960:CDS
TTGTACATACATTAACAATA+CGG 0.470364 4_1:-82327620 Msa0577960:CDS
TTGTAGGAGGTATGTTCTCC+AGG 0.472948 4_1:+82324363 None:intergenic
AAATACAATTTACTCTGACT+TGG 0.474303 4_1:+82327881 None:intergenic
GGAGGTATGTTCTCCAGGCC+AGG 0.475726 4_1:+82324368 None:intergenic
TTTAAGAACTTGCTCCCGCC+TGG 0.479129 4_1:+82325763 None:intergenic
CATCTGTCATGATAGGTATG+AGG 0.480362 4_1:-82327975 Msa0577960:intron
GACGTCAACCCTGTGGGACT+TGG 0.481549 4_1:-82329265 Msa0577960:CDS
GACACCAGCTCTCTCTGTCT+TGG 0.482972 4_1:-82324410 Msa0577960:CDS
ACATGAAACTAAGACAAAAT+CGG 0.484449 4_1:+82325808 None:intergenic
TATGTATTAATTCTAGAAGC+TGG 0.484676 4_1:-82327917 Msa0577960:CDS
ATTAGAGCACGCTGCCCACC+AGG 0.489698 4_1:+82324975 None:intergenic
TGGAGAAAATTCTCTGGACT+GGG 0.490104 4_1:-82329211 Msa0577960:CDS
CAATTGGCTCAGTTGCGCGC+TGG 0.490703 4_1:-82328411 Msa0577960:CDS
ATCCCTGGTGTTTGGAGCAG+CGG 0.491895 4_1:+82329366 None:intergenic
TACGAGTACGTTGCTGAGGA+TGG 0.493701 4_1:-82324570 Msa0577960:CDS
GAGGGCTTGGTTCTCTCTGT+TGG 0.494157 4_1:-82327956 Msa0577960:CDS
ATACCTGAACATCCCTGGCC+TGG 0.496705 4_1:-82324381 Msa0577960:exon
TGAATCTTCACTGGATGGAT+GGG 0.497784 4_1:-82328346 Msa0577960:CDS
GGTCAGTAGAGATAGTGATT+GGG 0.500030 4_1:-82328590 Msa0577960:CDS
GCAAGAATTAGTACAAAAGT+GGG 0.501200 4_1:-82327857 Msa0577960:CDS
TTAATGTATGTACAAGAAAA+GGG 0.503140 4_1:+82327628 None:intergenic
GATCGCTCGCAATTGCCAAT+TGG 0.504803 4_1:+82329636 None:intergenic
TGGTATTGAGCCTTCCAGGC+GGG 0.505603 4_1:-82325777 Msa0577960:CDS
ATCACCAGTGATAGTTGAGC+GGG 0.506989 4_1:+82328497 None:intergenic
TAGCCGCTGCTCCAAACACC+AGG 0.507877 4_1:-82329369 Msa0577960:CDS
CGCTCGCAATTGCCAATTGG+AGG 0.507964 4_1:+82329639 None:intergenic
AAATCATAGTAATTACACTT+TGG 0.508911 4_1:-82323490 Msa0577960:three_prime_UTR
ATCACTATCTCTACTGACCT+TGG 0.510201 4_1:+82328594 None:intergenic
GCTTCTAGAATTAATACATA+AGG 0.513253 4_1:+82327920 None:intergenic
CTGCAATGAAGGCTTTGGTA+AGG 0.516682 4_1:-82328647 Msa0577960:intron
CTTTGGGTAGTACTCTTGAC+AGG 0.517774 4_1:-82328066 Msa0577960:intron
TATCACTGGTGATCTCTTCA+GGG 0.525143 4_1:-82328487 Msa0577960:CDS
CAGTCGTTGTACAGAGGAGC+GGG 0.528087 4_1:+82329399 None:intergenic
AAGATTCCTTGAGAAGATCT+GGG 0.529508 4_1:-82325617 Msa0577960:CDS
GATCTTCGACCAAGTCCCAC+AGG 0.531721 4_1:+82329256 None:intergenic
GTAGTTACCTCAAAATATGA+TGG 0.532512 4_1:-82328294 Msa0577960:CDS
AAAAGAAACTGTACCTGCAA+TGG 0.533749 4_1:+82325567 None:intergenic
AACTGTACCTGCAATGGACC+CGG 0.533940 4_1:+82325573 None:intergenic
ATCAAGGAGACAGAATATCT+CGG 0.538498 4_1:-82324947 Msa0577960:CDS
GTTGACACAAGTCCTCCAAT+TGG 0.538762 4_1:-82329651 Msa0577960:five_prime_UTR
ACTGGATGATCTGGTTTCAC+CGG 0.539360 4_1:+82327657 None:intergenic
TGTCCGTAAACTCATGCTCA+GGG 0.540648 4_1:-82329038 Msa0577960:CDS
ACAGTAGTATTCTGAGCACC+AGG 0.541242 4_1:+82329100 None:intergenic
CTCTGACTTGGATCCCCTGA+AGG 0.545090 4_1:+82327893 None:intergenic
GAATTGGACTGACAACTGAC+AGG 0.546532 4_1:+82329683 None:intergenic
AAGGAAGGCAGATGAAGAGG+TGG 0.546607 4_1:-82328628 Msa0577960:CDS
GTCAGTAGAGATAGTGATTG+GGG 0.546856 4_1:-82328589 Msa0577960:CDS
GAAAGTAGTGTTGATTTGTG+AGG 0.548084 4_1:+82329447 None:intergenic
TATTTGCTTTGTCCGGCAAG+TGG 0.553339 4_1:+82324440 None:intergenic
TGGGAATGAGCTTTATGAGC+TGG 0.553677 4_1:-82324550 Msa0577960:intron
AGTGATAGTTGAGCGGGCAG+TGG 0.554082 4_1:+82328503 None:intergenic
GGCTTGGTTCTCTCTGTTGG+CGG 0.554436 4_1:-82327953 Msa0577960:CDS
AGGTGGTAGAGCTGCTTCCA+AGG 0.555546 4_1:-82328611 Msa0577960:CDS
GACTATACGTACTGATGATG+TGG 0.555620 4_1:-82329176 Msa0577960:CDS
AAATCTGAATCTTCACTGGA+TGG 0.556032 4_1:-82328351 Msa0577960:CDS
ACGAGTACGTTGCTGAGGAT+GGG 0.556225 4_1:-82324569 Msa0577960:CDS
AGAACTTGCTCCCGCCTGGA+AGG 0.556592 4_1:+82325767 None:intergenic
TCAAGGAGACAGAATATCTC+GGG 0.556593 4_1:-82324946 Msa0577960:intron
GAAGAATACCTGAACATCCC+TGG 0.556642 4_1:-82324386 Msa0577960:exon
ATCTGTCATGATAGGTATGA+GGG 0.558247 4_1:-82327974 Msa0577960:intron
AGTAAATGCGTCAAAGAACC+AGG 0.559462 4_1:-82326812 Msa0577960:CDS
GACGGAACCTTACTTGTAGG+AGG 0.563579 4_1:+82324350 None:intergenic
GCTCAGGGGTTACTCTGTCA+AGG 0.566034 4_1:-82329023 Msa0577960:intron
ACGGTTTGAGCCTAGAAGAC+AGG 0.567499 4_1:-82327601 Msa0577960:intron
GATGCTCTTCTTGTTCGTGA+AGG 0.569216 4_1:-82329145 Msa0577960:CDS
ACTGCCCGCTCAACTATCAC+TGG 0.569404 4_1:-82328501 Msa0577960:CDS
CTCAAAATATGATGGAGGGA+TGG 0.571128 4_1:-82328286 Msa0577960:CDS
TTCTCCAAGACAGAGAGAGC+TGG 0.571260 4_1:+82324406 None:intergenic
GCTGCTCCAAACACCAGGGA+TGG 0.572532 4_1:-82329364 Msa0577960:CDS
GCCTGGAAGGCTCAATACCA+AGG 0.575877 4_1:+82325780 None:intergenic
AGCAAGTTCTTAAAGCCAAG+AGG 0.576792 4_1:-82325754 Msa0577960:CDS
CGTGCTCTAATATTTGATCA+AGG 0.579384 4_1:-82324963 Msa0577960:CDS
AAGAAAATGTAGATATTACA+GGG 0.581726 4_1:-82323583 Msa0577960:three_prime_UTR
TTTGGAGCAGCGGCTATAGG+AGG 0.582108 4_1:+82329376 None:intergenic
CTATTTAGTACGTGGAAGCA+CGG 0.584626 4_1:-82329768 Msa0577960:five_prime_UTR
ATTTGCTTTGTCCGGCAAGT+GGG 0.589515 4_1:+82324441 None:intergenic
GGGTATGTCTTCAATAGAGG+TGG 0.590645 4_1:-82328121 Msa0577960:CDS
GTTACCTCAAAATATGATGG+AGG 0.594354 4_1:-82328291 Msa0577960:CDS
GGTAAGGAAGGCAGATGAAG+AGG 0.596194 4_1:-82328631 Msa0577960:CDS
AATGAAGGCTTTGGTAAGGA+AGG 0.596671 4_1:-82328643 Msa0577960:intron
GGGATGGCAAACTCACACAT+AGG 0.598239 4_1:+82329121 None:intergenic
GAGGTATGTTCTCCAGGCCA+GGG 0.602858 4_1:+82324369 None:intergenic
GCAAGTTCTTAAAGCCAAGA+GGG 0.604143 4_1:-82325753 Msa0577960:intron
GACAACTGACAGGAATCGGA+TGG 0.607102 4_1:+82329693 None:intergenic
AGTAGTGTTGATTTGTGAGG+AGG 0.608720 4_1:+82329450 None:intergenic
GGATACACAATAGTTCGTCC+GGG 0.610507 4_1:-82325591 Msa0577960:CDS
GCAGCAATTGTTGTTGCTGA+AGG 0.611171 4_1:+82329529 None:intergenic
GGGCATCAGTTGTGCTGATG+TGG 0.616066 4_1:-82324732 Msa0577960:CDS
TGGGACTTGGTCGAAGATCG+CGG 0.620126 4_1:-82329252 Msa0577960:CDS
CTCTTCAGGGTTGATCAGCA+AGG 0.623616 4_1:-82328474 Msa0577960:CDS
AGTATTCTGAGCACCAGGGA+TGG 0.632012 4_1:+82329105 None:intergenic
TATGAAAACACCTACAGGCA+AGG 0.632269 4_1:+82326750 None:intergenic
TTACCTCAAAATATGATGGA+GGG 0.640633 4_1:-82328290 Msa0577960:CDS
TCCAAGCCCAGATCTTCTCA+AGG 0.642912 4_1:+82325611 None:intergenic
CTCGACGACGTCAACCCTGT+GGG 0.648664 4_1:-82329271 Msa0577960:CDS
AGGAGGCAGTCGTTGTACAG+AGG 0.649342 4_1:+82329393 None:intergenic
TCTAGAAGCTGGTCCTTCAG+GGG 0.650111 4_1:-82327906 Msa0577960:CDS
ATCTTCGACCAAGTCCCACA+GGG 0.651382 4_1:+82329257 None:intergenic
TGGTGATCCAAACACAGTCA+AGG 0.654891 4_1:-82328562 Msa0577960:CDS
ATGTTACGAGTACGTTGCTG+AGG 0.656759 4_1:-82324574 Msa0577960:CDS
ATAATGAATTGAAAATGCAG+TGG 0.657643 4_1:+82329604 None:intergenic
AACACTCCCTATTTAGTACG+TGG 0.661051 4_1:-82329776 Msa0577960:five_prime_UTR
GATCACCAGTGATAGTTGAG+CGG 0.662278 4_1:+82328496 None:intergenic
GCAGTCGTTGTACAGAGGAG+CGG 0.662658 4_1:+82329398 None:intergenic
TCTCGACGACGTCAACCCTG+TGG 0.668504 4_1:-82329272 Msa0577960:CDS
GCTGACAGGAAGAACCTGGT+GGG 0.669326 4_1:-82324989 Msa0577960:intron
TATACGTACTGATGATGTGG+AGG 0.669817 4_1:-82329173 Msa0577960:CDS
TTGGTATTGAGCCTTCCAGG+CGG 0.672929 4_1:-82325778 Msa0577960:CDS
TGCTGACAGGAAGAACCTGG+TGG 0.676407 4_1:-82324990 Msa0577960:intron
AATTGTTGTTGCTGAAGGTG+AGG 0.678588 4_1:+82329534 None:intergenic
CTGTCAAGAGTACTACCCAA+AGG 0.683886 4_1:+82328067 None:intergenic
GATGGATGGGAAGTTCGTCA+AGG 0.684473 4_1:-82328333 Msa0577960:CDS
ATCGCGGCAGATATTCGATG+AGG 0.685359 4_1:-82329236 Msa0577960:CDS
GTCCGTAAACTCATGCTCAG+GGG 0.688942 4_1:-82329037 Msa0577960:CDS
AGCCGCTGCTCCAAACACCA+GGG 0.697507 4_1:-82329368 Msa0577960:CDS
CAGTAGTATTCTGAGCACCA+GGG 0.701255 4_1:+82329101 None:intergenic
TGTGGCCGATATATGTGTGA+AGG 0.705155 4_1:-82324714 Msa0577960:CDS
AGAAAATGTAGATATTACAG+GGG 0.712636 4_1:-82323582 Msa0577960:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAAATAAAATATA+GGG + chr4_1:82325149-82325168 None:intergenic 0.0%
!! TAAAATTAAAAATAAAATAT+AGG + chr4_1:82325150-82325169 None:intergenic 0.0%
!!! TATATTTTATTTTTAATTTT+AGG - chr4_1:82325149-82325168 Msa0577960:intron 0.0%
!!! ATATTTTATTTTTAATTTTA+GGG - chr4_1:82325150-82325169 Msa0577960:intron 0.0%
!! TATGTATGTATAAAATAAAA+TGG - chr4_1:82324478-82324497 Msa0577960:intron 10.0%
!! ATTTAATAAATTACATTAGA+AGG - chr4_1:82325844-82325863 Msa0577960:intron 10.0%
!!! ATTATTTATCTTTATTGATT+TGG - chr4_1:82326986-82327005 Msa0577960:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr4_1:82328171-82328190 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr4_1:82328172-82328191 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326338-82326357 None:intergenic 100.0%
!! AATATCCAATAACATAATTA+AGG + chr4_1:82324534-82324553 None:intergenic 15.0%
!! ACAAATTTAAGTAAAAGATT+CGG + chr4_1:82325739-82325758 None:intergenic 15.0%
!!! TTTTTATCTTTTATACTATG+AGG + chr4_1:82325996-82326015 None:intergenic 15.0%
!!! AGATAAAAAAATGTTGTTTT+AGG - chr4_1:82326007-82326026 Msa0577960:intron 15.0%
!!! TTTTCTTATAATAAAATGCA+AGG - chr4_1:82326719-82326738 Msa0577960:intron 15.0%
!!! AGTTTTCAATTTAAAATACT+TGG - chr4_1:82327039-82327058 Msa0577960:intron 15.0%
!!! GTTTTCAATTTAAAATACTT+GGG - chr4_1:82327040-82327059 Msa0577960:intron 15.0%
!! TTTAAATACATTCACAAAAT+TGG + chr4_1:82327853-82327872 None:intergenic 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr4_1:82328106-82328125 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr4_1:82328107-82328126 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr4_1:82328170-82328189 None:intergenic 15.0%
!!! TTCAATTTTTCAAAAATCAA+AGG + chr4_1:82329081-82329100 None:intergenic 15.0%
!! ATCAATAAATAAATTGCATT+AGG - chr4_1:82329120-82329139 Msa0577960:CDS 15.0%
!! ACATATATCAAAATATAATG+TGG - chr4_1:82329409-82329428 Msa0577960:CDS 15.0%
!! TTAAGTATTCATTTAAATTG+TGG - chr4_1:82329564-82329583 Msa0577960:five_prime_UTR 15.0%
!!! AATATCTACATTTTCTTTTT+TGG + chr4_1:82329705-82329724 None:intergenic 15.0%
!!! ATAAAATGGTTAATTTTCCT+TGG - chr4_1:82324492-82324511 Msa0577960:intron 20.0%
!! ATTCACCTTAATTATGTTAT+TGG - chr4_1:82324526-82324545 Msa0577960:intron 20.0%
!! AATAATCTTGCAAAAAATGT+TGG + chr4_1:82325102-82325121 None:intergenic 20.0%
!! TTAATGTATGTACAAGAAAA+GGG + chr4_1:82325666-82325685 None:intergenic 20.0%
!! TTGTACATACATTAACAATA+CGG - chr4_1:82325671-82325690 Msa0577960:intron 20.0%
!!! TTAAATTTGTCTTCTGTTTT+TGG - chr4_1:82325749-82325768 Msa0577960:intron 20.0%
!! ACTTGTAAGGAAAAATAAAA+GGG + chr4_1:82326106-82326125 None:intergenic 20.0%
!! TACTTGTAAGGAAAAATAAA+AGG + chr4_1:82326107-82326126 None:intergenic 20.0%
!! TTCTATAATTCTGTTACTAA+TGG + chr4_1:82326161-82326180 None:intergenic 20.0%
!!! AGGTATATTGATTGATATTT+TGG - chr4_1:82327172-82327191 Msa0577960:intron 20.0%
!! TGCATTGGATTAATTATTAA+TGG - chr4_1:82327777-82327796 Msa0577960:intron 20.0%
!! AATTATTAATGGCTTAAGAT+TGG - chr4_1:82327788-82327807 Msa0577960:intron 20.0%
!!! GACACTTTTTTTTAGTAAAT+GGG + chr4_1:82328037-82328056 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr4_1:82328074-82328093 None:intergenic 20.0%
!! AAAGTGGAATATATTGAATT+GGG + chr4_1:82328147-82328166 None:intergenic 20.0%
!! CAATAATCAAAATTGTTTAC+GGG + chr4_1:82328497-82328516 None:intergenic 20.0%
!! CCAATAATCAAAATTGTTTA+CGG + chr4_1:82328498-82328517 None:intergenic 20.0%
!!! ATTTTGATTATTGGAATAAC+TGG - chr4_1:82328504-82328523 Msa0577960:CDS 20.0%
!!! TGAAAATGTTAAGTTTCTTT+TGG + chr4_1:82328684-82328703 None:intergenic 20.0%
!!! ATTTTTCTGTATATATTCAC+AGG - chr4_1:82329009-82329028 Msa0577960:intron 20.0%
!! CAAATTGAATGGAAATAATA+CGG + chr4_1:82329493-82329512 None:intergenic 20.0%
!! AAAGAAAATGTAGATATTAC+AGG - chr4_1:82329707-82329726 Msa0577960:five_prime_UTR 20.0%
!! AAGAAAATGTAGATATTACA+GGG - chr4_1:82329708-82329727 Msa0577960:five_prime_UTR 20.0%
! ATAATGAATTGAAAATGCAG+TGG + chr4_1:82323690-82323709 None:intergenic 25.0%
!! AGATTGATTTAGAAACTAAC+TGG + chr4_1:82324367-82324386 None:intergenic 25.0%
!! AGTTAGTTTCTAAATCAATC+TGG - chr4_1:82324366-82324385 Msa0577960:three_prime_UTR 25.0%
!! GTTAGTTTCTAAATCAATCT+GGG - chr4_1:82324367-82324386 Msa0577960:three_prime_UTR 25.0%
! TTAGTTTCTAAATCAATCTG+GGG - chr4_1:82324368-82324387 Msa0577960:three_prime_UTR 25.0%
!! TTTGATTGGCTAAAAAACAT+GGG + chr4_1:82324414-82324433 None:intergenic 25.0%
! GAATGTGAAATTGCTAAATA+TGG + chr4_1:82324442-82324461 None:intergenic 25.0%
! TCAAATCATTTCTGACAAAT+CGG + chr4_1:82324579-82324598 None:intergenic 25.0%
!! TAATCTATCTAAAGCATTTC+AGG - chr4_1:82324846-82324865 Msa0577960:intron 25.0%
! ATTTAAATCTGAATCTTCAC+TGG - chr4_1:82324936-82324955 Msa0577960:intron 25.0%
!!! GCTTCTAGAATTAATACATA+AGG + chr4_1:82325374-82325393 None:intergenic 25.0%
!! TATGTATTAATTCTAGAAGC+TGG - chr4_1:82325374-82325393 Msa0577960:intron 25.0%
! AAATACAATTTACTCTGACT+TGG + chr4_1:82325413-82325432 None:intergenic 25.0%
!! AAGAATCATTCTCATTTTAG+TGG - chr4_1:82325469-82325488 Msa0577960:intron 25.0%
! GTTAATGTATGTACAAGAAA+AGG + chr4_1:82325667-82325686 None:intergenic 25.0%
! TAAAAGATTCGGAAACAATA+AGG + chr4_1:82325728-82325747 None:intergenic 25.0%
! AAATAGTATTTAATCACCAC+TGG - chr4_1:82325872-82325891 Msa0577960:intron 25.0%
! TTGTAAGGAAAAATAAAAGG+GGG + chr4_1:82326104-82326123 None:intergenic 25.0%
! CTTGTAAGGAAAAATAAAAG+GGG + chr4_1:82326105-82326124 None:intergenic 25.0%
! TAACAAAAGCAAGTAAATAG+GGG + chr4_1:82326309-82326328 None:intergenic 25.0%
! GTAACAAAAGCAAGTAAATA+GGG + chr4_1:82326310-82326329 None:intergenic 25.0%
! TGTAACAAAAGCAAGTAAAT+AGG + chr4_1:82326311-82326330 None:intergenic 25.0%
!!! TTTCGTATGACTTTTTTCTT+TGG - chr4_1:82326941-82326960 Msa0577960:intron 25.0%
! TTAAATTGAAAACTATCAGC+AGG + chr4_1:82327033-82327052 None:intergenic 25.0%
! TTATTGACACTCTTTCATTT+AGG - chr4_1:82327152-82327171 Msa0577960:intron 25.0%
!!! TATTTTGGAGAAAATCATGA+AGG - chr4_1:82327187-82327206 Msa0577960:intron 25.0%
!!! ATTTTGGAGAAAATCATGAA+GGG - chr4_1:82327188-82327207 Msa0577960:intron 25.0%
!!! ATGTTCCTTTTTGTTATGTT+TGG - chr4_1:82327620-82327639 Msa0577960:CDS 25.0%
! ACATTCAAAACATATTCTAC+CGG + chr4_1:82327758-82327777 None:intergenic 25.0%
!!! AATATGTTTTGAATGTGCAT+TGG - chr4_1:82327762-82327781 Msa0577960:intron 25.0%
!! TAATATTGAGTGGATTTAGA+GGG + chr4_1:82327927-82327946 None:intergenic 25.0%
! TAAATCCACTCAATATTAGA+GGG - chr4_1:82327929-82327948 Msa0577960:CDS 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG + chr4_1:82328038-82328057 None:intergenic 25.0%
! GAAAGTGGAATATATTGAAT+TGG + chr4_1:82328148-82328167 None:intergenic 25.0%
!!! TTCTTGTTTTTAGGTTTCTT+CGG - chr4_1:82328437-82328456 Msa0577960:CDS 25.0%
!!! CCGTAAACAATTTTGATTAT+TGG - chr4_1:82328495-82328514 Msa0577960:CDS 25.0%
! TGCCAAATGTCATAATTTAT+AGG - chr4_1:82328538-82328557 Msa0577960:CDS 25.0%
! GCCAAATGTCATAATTTATA+GGG - chr4_1:82328539-82328558 Msa0577960:CDS 25.0%
!!! GATTATTTTTGTGTCTAATC+AGG - chr4_1:82328824-82328843 Msa0577960:intron 25.0%
!! AATTTAACTGTGCAGATTTT+AGG + chr4_1:82329038-82329057 None:intergenic 25.0%
!! AGTGTAAAAATACCGAATTT+TGG - chr4_1:82329171-82329190 Msa0577960:CDS 25.0%
!! TGTTTCTCTAAAAATACCTT+TGG - chr4_1:82329196-82329215 Msa0577960:CDS 25.0%
! AGTAGTATACACAAATTGAA+TGG + chr4_1:82329504-82329523 None:intergenic 25.0%
! AGTATTCATTTAAATTGTGG+TGG - chr4_1:82329567-82329586 Msa0577960:five_prime_UTR 25.0%
! AGAAAATGTAGATATTACAG+GGG - chr4_1:82329709-82329728 Msa0577960:five_prime_UTR 25.0%
! GGAATTCATCATATTTTGTG+TGG - chr4_1:82323544-82323563 Msa0577960:three_prime_UTR 30.0%
TGTCAACTTCAAATCTGAAT+TGG + chr4_1:82323627-82323646 None:intergenic 30.0%
AATACAACACTTTCACTTTC+AGG - chr4_1:82323816-82323835 Msa0577960:intron 30.0%
!! AATACTACTGTACTTGTTGT+TGG - chr4_1:82324203-82324222 Msa0577960:intron 30.0%
AACTAACTGGTCATCAATTA+TGG + chr4_1:82324354-82324373 None:intergenic 30.0%
! GTTTGATTGGCTAAAAAACA+TGG + chr4_1:82324415-82324434 None:intergenic 30.0%
! TAAATATGGTGGTGTTTGAT+TGG + chr4_1:82324428-82324447 None:intergenic 30.0%
TGTGAAATTGCTAAATATGG+TGG + chr4_1:82324439-82324458 None:intergenic 30.0%
GACAGTTTCAAAACATAAAC+TGG - chr4_1:82324597-82324616 Msa0577960:intron 30.0%
!! ATCAACTTTTTCTGCAATGA+AGG - chr4_1:82324633-82324652 Msa0577960:intron 30.0%
GTAGTTACCTCAAAATATGA+TGG - chr4_1:82324997-82325016 Msa0577960:intron 30.0%
! TTACCTCAAAATATGATGGA+GGG - chr4_1:82325001-82325020 Msa0577960:intron 30.0%
ATTCTCAGTGAACTCAAATT+TGG + chr4_1:82325034-82325053 None:intergenic 30.0%
! AAATTTGAGTTCACTGAGAA+TGG - chr4_1:82325033-82325052 Msa0577960:intron 30.0%
AAAAAAGCTTTCTCTACCTT+TGG - chr4_1:82325208-82325227 Msa0577960:intron 30.0%
AAAAAGCTTTCTCTACCTTT+GGG - chr4_1:82325209-82325228 Msa0577960:intron 30.0%
TGCAAGAATTAGTACAAAAG+TGG - chr4_1:82325433-82325452 Msa0577960:intron 30.0%
GCAAGAATTAGTACAAAAGT+GGG - chr4_1:82325434-82325453 Msa0577960:intron 30.0%
! TACAAAAGTGGGATTTTGTA+GGG - chr4_1:82325445-82325464 Msa0577960:intron 30.0%
ATTCGGAAACAATAAGGTAT+TGG + chr4_1:82325722-82325741 None:intergenic 30.0%
AAAGCCAGTTATTGAACTAA+TGG + chr4_1:82325949-82325968 None:intergenic 30.0%
!!! ATGTTGTTTTAGGACATTCA+AGG - chr4_1:82326017-82326036 Msa0577960:intron 30.0%
TAAAAGTTGTTACTAGACAG+AGG + chr4_1:82326059-82326078 None:intergenic 30.0%
TGTAAGGAAAAATAAAAGGG+GGG + chr4_1:82326103-82326122 None:intergenic 30.0%
TTAGAAACCAAGCAATAGTT+AGG - chr4_1:82326264-82326283 Msa0577960:intron 30.0%
AACAAAAGCAAGTAAATAGG+GGG + chr4_1:82326308-82326327 None:intergenic 30.0%
! TCTGAAACAAGAGTGAATAT+AGG + chr4_1:82326449-82326468 None:intergenic 30.0%
! TATATTCACTCTTGTTTCAG+AGG - chr4_1:82326448-82326467 Msa0577960:intron 30.0%
AAATGTATGAAAACACCTAC+AGG + chr4_1:82326549-82326568 None:intergenic 30.0%
ATATGCTTGTCTAATGTTCA+TGG - chr4_1:82326606-82326625 Msa0577960:intron 30.0%
TTTCTATCTTCTTGAAGATG+TGG - chr4_1:82326814-82326833 Msa0577960:CDS 30.0%
GAGTTGAAGTTTATAAGACA+TGG + chr4_1:82326858-82326877 None:intergenic 30.0%
ATGTAACATAACAGCATCAA+AGG + chr4_1:82326898-82326917 None:intergenic 30.0%
! CAATTTAAAATACTTGGGTC+TGG - chr4_1:82327045-82327064 Msa0577960:intron 30.0%
GTGTCAATAAGTGATTATTG+CGG + chr4_1:82327142-82327161 None:intergenic 30.0%
GAAAAGAAGAATGCATAACT+AGG - chr4_1:82327358-82327377 Msa0577960:intron 30.0%
CAATAGAATATACATCTTCC+AGG + chr4_1:82327386-82327405 None:intergenic 30.0%
TCACATGCAAAACTTACATT+AGG + chr4_1:82327439-82327458 None:intergenic 30.0%
! CTAATATTGAGTGGATTTAG+AGG + chr4_1:82327928-82327947 None:intergenic 30.0%
CTAAATCCACTCAATATTAG+AGG - chr4_1:82327928-82327947 Msa0577960:CDS 30.0%
AAATCCACTCAATATTAGAG+GGG - chr4_1:82327930-82327949 Msa0577960:CDS 30.0%
! AGTATTTGGTTTAGGGTATA+TGG + chr4_1:82327992-82328011 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr4_1:82328163-82328182 None:intergenic 30.0%
!!! CATACACGTTTCTTGTTTTT+AGG - chr4_1:82328428-82328447 Msa0577960:CDS 30.0%
GCCCTATAAATTATGACATT+TGG + chr4_1:82328543-82328562 None:intergenic 30.0%
! TAACATTTTCAACCTTGTCT+AGG - chr4_1:82328693-82328712 Msa0577960:intron 30.0%
TGAATGCAGATTAGATCAAA+AGG + chr4_1:82328796-82328815 None:intergenic 30.0%
! TTTTGATCTAATCTGCATTC+AGG - chr4_1:82328795-82328814 Msa0577960:intron 30.0%
TTTGATCTAATCTGCATTCA+GGG - chr4_1:82328796-82328815 Msa0577960:intron 30.0%
AGATAGTTATTTGCTTTGTC+CGG + chr4_1:82328861-82328880 None:intergenic 30.0%
TAGAAGTAGAAGCAATTTGA+CGG + chr4_1:82328962-82328981 None:intergenic 30.0%
TAGAGAAACAAGCCAAAATT+CGG + chr4_1:82329186-82329205 None:intergenic 30.0%
TTGATATATGTATCATCCCT+TGG + chr4_1:82329400-82329419 None:intergenic 30.0%
!! TTGAACATTGACTCATTTAC+AGG - chr4_1:82329603-82329622 Msa0577960:five_prime_UTR 30.0%
! TCATCATATTTTGTGTGGCT+TGG - chr4_1:82323549-82323568 Msa0577960:three_prime_UTR 35.0%
!! GAAAGTAGTGTTGATTTGTG+AGG + chr4_1:82323847-82323866 None:intergenic 35.0%
! ATCAATCTGGGGTACAAAAA+AGG - chr4_1:82324379-82324398 Msa0577960:exon 35.0%
GTGAATTGTCTTCTAAACCA+AGG + chr4_1:82324512-82324531 None:intergenic 35.0%
! TTTTTCTGCAATGAAGGCTT+TGG - chr4_1:82324639-82324658 Msa0577960:intron 35.0%
TCAGGATCACAACAATCAAT+TGG - chr4_1:82324864-82324883 Msa0577960:intron 35.0%
AAATCTGAATCTTCACTGGA+TGG - chr4_1:82324940-82324959 Msa0577960:intron 35.0%
GTTACCTCAAAATATGATGG+AGG - chr4_1:82325000-82325019 Msa0577960:intron 35.0%
AGGGGTAAAATCAGAATTTC+AGG + chr4_1:82325130-82325149 None:intergenic 35.0%
TTAGGGTATGTCTTCAATAG+AGG - chr4_1:82325167-82325186 Msa0577960:intron 35.0%
ATGAGTTCATCTGTCATGAT+AGG - chr4_1:82325309-82325328 Msa0577960:intron 35.0%
ATCTGTCATGATAGGTATGA+GGG - chr4_1:82325317-82325336 Msa0577960:intron 35.0%
! GTACAAAAGTGGGATTTTGT+AGG - chr4_1:82325444-82325463 Msa0577960:intron 35.0%
!! TTCTCATTTTAGTGGCTCTA+TGG - chr4_1:82325477-82325496 Msa0577960:intron 35.0%
! ACAAGAAAAGGGTCTAAAAC+TGG + chr4_1:82325655-82325674 None:intergenic 35.0%
CTTTCCGAACCTTTGTAATA+GGG - chr4_1:82325970-82325989 Msa0577960:intron 35.0%
GACTCTAAGTGATACTTGTA+AGG + chr4_1:82326119-82326138 None:intergenic 35.0%
! TCTGTTACTAATGGACGTAA+TGG + chr4_1:82326152-82326171 None:intergenic 35.0%
TAAGTAAAACAGGTTTGTGG+CGG + chr4_1:82326222-82326241 None:intergenic 35.0%
TCCTAAGTAAAACAGGTTTG+TGG + chr4_1:82326225-82326244 None:intergenic 35.0%
AGAATGGTCCTAAGTAAAAC+AGG + chr4_1:82326232-82326251 None:intergenic 35.0%
CTTATTGCCTAACTATTGCT+TGG + chr4_1:82326274-82326293 None:intergenic 35.0%
ACAAAAGCAAGTAAATAGGG+GGG + chr4_1:82326307-82326326 None:intergenic 35.0%
GAGAAGCTTTCAGCTAATAT+TGG - chr4_1:82326506-82326525 Msa0577960:intron 35.0%
TATATAAAAGCCTTGCCTGT+AGG - chr4_1:82326531-82326550 Msa0577960:intron 35.0%
AAATGTTCAGAGCGATGATA+AGG - chr4_1:82326676-82326695 Msa0577960:intron 35.0%
AAAATGCAAGGATACCAACA+AGG - chr4_1:82326731-82326750 Msa0577960:intron 35.0%
! GGACAAGCTTTTAGTAAAAC+TGG - chr4_1:82327112-82327131 Msa0577960:intron 35.0%
TCAGATTACTAGAATCAAGC+AGG + chr4_1:82327333-82327352 None:intergenic 35.0%
GGTGACCAAACATAACAAAA+AGG + chr4_1:82327628-82327647 None:intergenic 35.0%
AAGATTCCTTGAGAAGATCT+GGG - chr4_1:82327674-82327693 Msa0577960:CDS 35.0%
AAAAGAAACTGTACCTGCAA+TGG + chr4_1:82327727-82327746 None:intergenic 35.0%
GATTTAGAGGGAAAGAAGAT+GGG + chr4_1:82327886-82327905 None:intergenic 35.0%
GATTTAGAGGGAAAGAAGAT+GGG + chr4_1:82327886-82327905 None:intergenic 35.0%
! TTTGGTTTAGGGTATATGGA+GGG + chr4_1:82327988-82328007 None:intergenic 35.0%
! ATTTGGTTTAGGGTATATGG+AGG + chr4_1:82327989-82328008 None:intergenic 35.0%
AGTAAATGGGTCAGATATTC+CGG + chr4_1:82328024-82328043 None:intergenic 35.0%
!! TGAAATGGCTCAGCTATTTT+GGG + chr4_1:82328059-82328078 None:intergenic 35.0%
! TTGAAATGGCTCAGCTATTT+TGG + chr4_1:82328060-82328079 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr4_1:82328192-82328211 Msa0577960:intron 35.0%
CGTGCTCTAATATTTGATCA+AGG - chr4_1:82328328-82328347 Msa0577960:CDS 35.0%
ATCAAGGAGACAGAATATCT+CGG - chr4_1:82328344-82328363 Msa0577960:CDS 35.0%
TCTATTCTTTACTGTCACTG+AGG - chr4_1:82328377-82328396 Msa0577960:CDS 35.0%
TGTATGATAGCAAATGTTGG+GGG + chr4_1:82328414-82328433 None:intergenic 35.0%
GTGTATGATAGCAAATGTTG+GGG + chr4_1:82328415-82328434 None:intergenic 35.0%
CGTGTATGATAGCAAATGTT+GGG + chr4_1:82328416-82328435 None:intergenic 35.0%
ACGTGTATGATAGCAAATGT+TGG + chr4_1:82328417-82328436 None:intergenic 35.0%
TGTTTCTTGCAGTTGAATCA+TGG + chr4_1:82328607-82328626 None:intergenic 35.0%
TTTGATGTGAGTAAACTGCT+TGG - chr4_1:82328632-82328651 Msa0577960:CDS 35.0%
TTCTACATAGCTGCATCAAA+TGG - chr4_1:82328977-82328996 Msa0577960:intron 35.0%
TTTCTTCCAGTTGTTGAAGT+AGG - chr4_1:82329299-82329318 Msa0577960:CDS 35.0%
ATGTTTCCTACTTCAACAAC+TGG + chr4_1:82329308-82329327 None:intergenic 35.0%
TTGACTACGTCAATCTCTTT+AGG - chr4_1:82329327-82329346 Msa0577960:CDS 35.0%
!! TCAATCTCTTTAGGACTGAT+CGG - chr4_1:82329336-82329355 Msa0577960:CDS 35.0%
GTGCAGTCAATAATACTCTA+TGG - chr4_1:82329366-82329385 Msa0577960:CDS 35.0%
ATATGTATCATCCCTTGGTT+GGG + chr4_1:82329395-82329414 None:intergenic 35.0%
TATATGTATCATCCCTTGGT+TGG + chr4_1:82329396-82329415 None:intergenic 35.0%
TAAGAGGGATAAATGGATCA+TGG + chr4_1:82329435-82329454 None:intergenic 35.0%
TTGTGTATACTACTGTCACT+TGG - chr4_1:82329510-82329529 Msa0577960:CDS 35.0%
! CTCATTTACAGGTCTTTTCA+AGG - chr4_1:82329614-82329633 Msa0577960:five_prime_UTR 35.0%
!! TTTACAGGTCTTTTCAAGGA+TGG - chr4_1:82329618-82329637 Msa0577960:five_prime_UTR 35.0%
AGATATTACAGGGGACTAAT+TGG - chr4_1:82329718-82329737 Msa0577960:five_prime_UTR 35.0%
AACACTCCCTATTTAGTACG+TGG - chr4_1:82323515-82323534 Msa0577960:three_prime_UTR 40.0%
GTGCTTCCACGTACTAAATA+GGG + chr4_1:82323524-82323543 None:intergenic 40.0%
CTATTTAGTACGTGGAAGCA+CGG - chr4_1:82323523-82323542 Msa0577960:three_prime_UTR 40.0%
! AATTGTTGTTGCTGAAGGTG+AGG + chr4_1:82323760-82323779 None:intergenic 40.0%
!! AGTAGTGTTGATTTGTGAGG+AGG + chr4_1:82323844-82323863 None:intergenic 40.0%
GAGGTTTGGAGAAAATTCTC+TGG - chr4_1:82324074-82324093 Msa0577960:intron 40.0%
TTGGAGAAAATTCTCTGGAC+TGG - chr4_1:82324079-82324098 Msa0577960:intron 40.0%
TGGAGAAAATTCTCTGGACT+GGG - chr4_1:82324080-82324099 Msa0577960:intron 40.0%
! GACTATACGTACTGATGATG+TGG - chr4_1:82324115-82324134 Msa0577960:intron 40.0%
! TATACGTACTGATGATGTGG+AGG - chr4_1:82324118-82324137 Msa0577960:intron 40.0%
GGACAACAATTCGACCTATA+CGG + chr4_1:82324238-82324257 None:intergenic 40.0%
TTGGCTAAAAAACATGGGAC+TGG + chr4_1:82324409-82324428 None:intergenic 40.0%
! AATGAAGGCTTTGGTAAGGA+AGG - chr4_1:82324648-82324667 Msa0577960:intron 40.0%
ATCACTATCTCTACTGACCT+TGG + chr4_1:82324700-82324719 None:intergenic 40.0%
AGGTCAGTAGAGATAGTGAT+TGG - chr4_1:82324700-82324719 Msa0577960:CDS 40.0%
GGTCAGTAGAGATAGTGATT+GGG - chr4_1:82324701-82324720 Msa0577960:CDS 40.0%
GTCAGTAGAGATAGTGATTG+GGG - chr4_1:82324702-82324721 Msa0577960:CDS 40.0%
TATCACTGGTGATCTCTTCA+GGG - chr4_1:82324804-82324823 Msa0577960:intron 40.0%
TGAATCTTCACTGGATGGAT+GGG - chr4_1:82324945-82324964 Msa0577960:intron 40.0%
! CATCCCTCCATCATATTTTG+AGG + chr4_1:82325007-82325026 None:intergenic 40.0%
! CTCAAAATATGATGGAGGGA+TGG - chr4_1:82325005-82325024 Msa0577960:intron 40.0%
!!! CTGCTGTTTTCTCAGGTATA+TGG - chr4_1:82325058-82325077 Msa0577960:intron 40.0%
! GTTTTCTCAGGTATATGGAG+AGG - chr4_1:82325063-82325082 Msa0577960:intron 40.0%
CATCTGTCATGATAGGTATG+AGG - chr4_1:82325316-82325335 Msa0577960:intron 40.0%
CCTGTCATGGTAATACAGAT+AGG + chr4_1:82325588-82325607 None:intergenic 40.0%
CCTATCTGTATTACCATGAC+AGG - chr4_1:82325585-82325604 Msa0577960:CDS 40.0%
!! GCCATTTTCATCATTTCGTC+CGG - chr4_1:82325615-82325634 Msa0577960:CDS 40.0%
ACCGGACGAAATGATGAAAA+TGG + chr4_1:82325619-82325638 None:intergenic 40.0%
TTGGACATTACCTGTCTTCT+AGG + chr4_1:82325703-82325722 None:intergenic 40.0%
TCAGAGACAAGACAAATGCA+AGG + chr4_1:82325776-82325795 None:intergenic 40.0%
TCGAGGTTCAAATGTTCAAC+CGG + chr4_1:82325916-82325935 None:intergenic 40.0%
GGCTCCATTAGTTCAATAAC+TGG - chr4_1:82325942-82325961 Msa0577960:intron 40.0%
GCTTTCCGAACCTTTGTAAT+AGG - chr4_1:82325969-82325988 Msa0577960:intron 40.0%
ACTATGAGGCCCTATTACAA+AGG + chr4_1:82325982-82326001 None:intergenic 40.0%
GAAAAATAAAAGGGGGGAAG+GGG + chr4_1:82326097-82326116 None:intergenic 40.0%
GGAAAAATAAAAGGGGGGAA+GGG + chr4_1:82326098-82326117 None:intergenic 40.0%
AGGAAAAATAAAAGGGGGGA+AGG + chr4_1:82326099-82326118 None:intergenic 40.0%
! AAGAATAGACGGGGTTAGTA+AGG + chr4_1:82326198-82326217 None:intergenic 40.0%
AAGTAAAACAGGTTTGTGGC+GGG + chr4_1:82326221-82326240 None:intergenic 40.0%
! GCCACAAACCTGTTTTACTT+AGG - chr4_1:82326221-82326240 Msa0577960:intron 40.0%
CTATTGCTTGGTTTCTAAGC+AGG + chr4_1:82326262-82326281 None:intergenic 40.0%
AGTCTGCGCAGAAAAAAAGA+GGG + chr4_1:82326374-82326393 None:intergenic 40.0%
AAGTCTGCGCAGAAAAAAAG+AGG + chr4_1:82326375-82326394 None:intergenic 40.0%
AGTAAATGCGTCAAAGAACC+AGG - chr4_1:82326479-82326498 Msa0577960:intron 40.0%
TATGAAAACACCTACAGGCA+AGG + chr4_1:82326544-82326563 None:intergenic 40.0%
CAACAAGGCAACTATAGTGT+GGG - chr4_1:82326746-82326765 Msa0577960:intron 40.0%
TTGTCCAATTGCTGACAACT+TGG - chr4_1:82327091-82327110 Msa0577960:intron 40.0%
TTGTCCAAGTTGTCAGCAAT+TGG + chr4_1:82327098-82327117 None:intergenic 40.0%
TTAGTTTCATGTTCTGGCCT+TGG - chr4_1:82327494-82327513 Msa0577960:intron 40.0%
AGCAAGTTCTTAAAGCCAAG+AGG - chr4_1:82327537-82327556 Msa0577960:intron 40.0%
GCAAGTTCTTAAAGCCAAGA+GGG - chr4_1:82327538-82327557 Msa0577960:intron 40.0%
AACAAATGAACCTACCCTCT+TGG + chr4_1:82327555-82327574 None:intergenic 40.0%
GAAGATTCCTTGAGAAGATC+TGG - chr4_1:82327673-82327692 Msa0577960:CDS 40.0%
TGGATACACAATAGTTCGTC+CGG - chr4_1:82327699-82327718 Msa0577960:intron 40.0%
! CAGTTTCTTTTGTAGTGTGC+CGG - chr4_1:82327736-82327755 Msa0577960:intron 40.0%
GGATTTAGAGGGAAAGAAGA+TGG + chr4_1:82327887-82327906 None:intergenic 40.0%
GGATTTAGAGGGAAAGAAGA+TGG + chr4_1:82327887-82327906 None:intergenic 40.0%
! TTGGTTTAGGGTATATGGAG+GGG + chr4_1:82327987-82328006 None:intergenic 40.0%
GTAAATGGGTCAGATATTCC+GGG + chr4_1:82328023-82328042 None:intergenic 40.0%
! GACTTGAATGTTTTGCTGAC+AGG - chr4_1:82328288-82328307 Msa0577960:CDS 40.0%
TCAAGGAGACAGAATATCTC+GGG - chr4_1:82328345-82328364 Msa0577960:CDS 40.0%
TAGCAAATGTTGGGGGAAAT+AGG + chr4_1:82328407-82328426 None:intergenic 40.0%
GAGTGCCTTCACACATATAT+CGG + chr4_1:82328585-82328604 None:intergenic 40.0%
ACTCGTAACATACCTAGACA+AGG + chr4_1:82328708-82328727 None:intergenic 40.0%
GAACATACCTCCTACAAGTA+AGG - chr4_1:82328934-82328953 Msa0577960:intron 40.0%
TTTGACGGAACCTTACTTGT+AGG + chr4_1:82328947-82328966 None:intergenic 40.0%
GATCCATTTATCCCTCTTAG+AGG - chr4_1:82329436-82329455 Msa0577960:CDS 40.0%
CGTGCTTCCACGTACTAAAT+AGG + chr4_1:82323525-82323544 None:intergenic 45.0%
GACTGACAACTGACAGGAAT+CGG + chr4_1:82323605-82323624 None:intergenic 45.0%
GAATTGGACTGACAACTGAC+AGG + chr4_1:82323611-82323630 None:intergenic 45.0%
GTTGACACAAGTCCTCCAAT+TGG - chr4_1:82323640-82323659 Msa0577960:three_prime_UTR 45.0%
! GCAGCAATTGTTGTTGCTGA+AGG + chr4_1:82323765-82323784 None:intergenic 45.0%
!!! GCTGCTTTTTGGTGTATGAG+AGG + chr4_1:82323869-82323888 None:intergenic 45.0%
!! GTTGTTGTCGTCGTCGTTTT+GGG + chr4_1:82323973-82323992 None:intergenic 45.0%
GGCAGATATTCGATGAGGTT+TGG - chr4_1:82324060-82324079 Msa0577960:intron 45.0%
GATGCTCTTCTTGTTCGTGA+AGG - chr4_1:82324146-82324165 Msa0577960:intron 45.0%
CAGTAGTATTCTGAGCACCA+GGG + chr4_1:82324193-82324212 None:intergenic 45.0%
ACAGTAGTATTCTGAGCACC+AGG + chr4_1:82324194-82324213 None:intergenic 45.0%
TTGTCCGTAAACTCATGCTC+AGG - chr4_1:82324252-82324271 Msa0577960:intron 45.0%
TGTCCGTAAACTCATGCTCA+GGG - chr4_1:82324253-82324272 Msa0577960:intron 45.0%
AACCCCTGAGCATGAGTTTA+CGG + chr4_1:82324259-82324278 None:intergenic 45.0%
! CTGCAATGAAGGCTTTGGTA+AGG - chr4_1:82324644-82324663 Msa0577960:intron 45.0%
GAGATAGTGATTGGGGATGT+TGG - chr4_1:82324709-82324728 Msa0577960:CDS 45.0%
TGGTGATCCAAACACAGTCA+AGG - chr4_1:82324729-82324748 Msa0577960:CDS 45.0%
ATCACCAGTGATAGTTGAGC+GGG + chr4_1:82324797-82324816 None:intergenic 45.0%
GATCACCAGTGATAGTTGAG+CGG + chr4_1:82324798-82324817 None:intergenic 45.0%
CTATCACTGGTGATCTCTTC+AGG - chr4_1:82324803-82324822 Msa0577960:intron 45.0%
CTGAATCTTCACTGGATGGA+TGG - chr4_1:82324944-82324963 Msa0577960:intron 45.0%
!!! AATGGAGCTGCTGTTTTCTC+AGG - chr4_1:82325051-82325070 Msa0577960:intron 45.0%
GGGTATGTCTTCAATAGAGG+TGG - chr4_1:82325170-82325189 Msa0577960:intron 45.0%
!! CTGTCAAGAGTACTACCCAA+AGG + chr4_1:82325227-82325246 None:intergenic 45.0%
CTTTGGGTAGTACTCTTGAC+AGG - chr4_1:82325225-82325244 Msa0577960:intron 45.0%
TCATGATAGGTATGAGGGCT+TGG - chr4_1:82325322-82325341 Msa0577960:intron 45.0%
! ATTCTAGAAGCTGGTCCTTC+AGG - chr4_1:82325383-82325402 Msa0577960:intron 45.0%
! TTCTAGAAGCTGGTCCTTCA+GGG - chr4_1:82325384-82325403 Msa0577960:intron 45.0%
AATGGCACTCTAACCTGTCA+TGG + chr4_1:82325601-82325620 None:intergenic 45.0%
! ACTGGATGATCTGGTTTCAC+CGG + chr4_1:82325637-82325656 None:intergenic 45.0%
! GGGTCTAAAACTGGATGATC+TGG + chr4_1:82325646-82325665 None:intergenic 45.0%
TTCAACTGCGATCTTACCAG+TGG + chr4_1:82325891-82325910 None:intergenic 45.0%
GTAAGATCGCAGTTGAACTC+CGG - chr4_1:82325894-82325913 Msa0577960:intron 45.0%
GGTTGAACATTTGAACCTCG+AGG - chr4_1:82325915-82325934 Msa0577960:intron 45.0%
GAGGCCCTATTACAAAGGTT+CGG + chr4_1:82325977-82325996 None:intergenic 45.0%
TGTTACTAGACAGAGGAGCA+AGG + chr4_1:82326052-82326071 None:intergenic 45.0%
TATCACTTAGAGTCCTCCAG+TGG - chr4_1:82326125-82326144 Msa0577960:intron 45.0%
! TAATGGACGTAATGGTCCAC+TGG + chr4_1:82326144-82326163 None:intergenic 45.0%
! TTTGTGGCGGGAAGAATAGA+CGG + chr4_1:82326209-82326228 None:intergenic 45.0%
CTAAGCAGGAGCAGTTAGAA+TGG + chr4_1:82326248-82326267 None:intergenic 45.0%
TCTGCGCAGAAAAAAAGAGG+GGG + chr4_1:82326372-82326391 None:intergenic 45.0%
GTCTGCGCAGAAAAAAAGAG+GGG + chr4_1:82326373-82326392 None:intergenic 45.0%
CCACACTATAGTTGCCTTGT+TGG + chr4_1:82326748-82326767 None:intergenic 45.0%
CCAACAAGGCAACTATAGTG+TGG - chr4_1:82326745-82326764 Msa0577960:intron 45.0%
AGAATGCATAACTAGGCACC+TGG - chr4_1:82327365-82327384 Msa0577960:intron 45.0%
GTTCTTAAAGCCAAGAGGGT+AGG - chr4_1:82327542-82327561 Msa0577960:intron 45.0%
ACCTTAATCCCGAATTCTCC+AGG - chr4_1:82327645-82327664 Msa0577960:CDS 45.0%
GGATACACAATAGTTCGTCC+GGG - chr4_1:82327700-82327719 Msa0577960:intron 45.0%
! GATGGGTGAGTGGATTTAGA+GGG + chr4_1:82327898-82327917 None:intergenic 45.0%
! AGATGGGTGAGTGGATTTAG+AGG + chr4_1:82327899-82327918 None:intergenic 45.0%
TGCTCCCCTCTAATATTGAG+TGG + chr4_1:82327937-82327956 None:intergenic 45.0%
! TTTAGGGTATATGGAGGGGA+AGG + chr4_1:82327983-82328002 None:intergenic 45.0%
!! CGGAGGGAGTATTTGGTTTA+GGG + chr4_1:82327999-82328018 None:intergenic 45.0%
!! ACGGAGGGAGTATTTGGTTT+AGG + chr4_1:82328000-82328019 None:intergenic 45.0%
! CCAAACTGGCTCAGATATAC+CGG - chr4_1:82328206-82328225 Msa0577960:intron 45.0%
! CAAACTGGCTCAGATATACC+GGG - chr4_1:82328207-82328226 Msa0577960:intron 45.0%
! TTTTGCTGACAGGAAGAACC+TGG - chr4_1:82328298-82328317 Msa0577960:CDS 45.0%
TGTGGCCGATATATGTGTGA+AGG - chr4_1:82328577-82328596 Msa0577960:CDS 45.0%
ATGTTACGAGTACGTTGCTG+AGG - chr4_1:82328717-82328736 Msa0577960:intron 45.0%
! TGGGAATGAGCTTTATGAGC+TGG - chr4_1:82328741-82328760 Msa0577960:intron 45.0%
ATTTGCTTTGTCCGGCAAGT+GGG + chr4_1:82328853-82328872 None:intergenic 45.0%
TATTTGCTTTGTCCGGCAAG+TGG + chr4_1:82328854-82328873 None:intergenic 45.0%
GAAGAATACCTGAACATCCC+TGG - chr4_1:82328905-82328924 Msa0577960:intron 45.0%
! TTGTAGGAGGTATGTTCTCC+AGG + chr4_1:82328931-82328950 None:intergenic 45.0%
!! ATACCTTTGGAGTTGCATGC+TGG - chr4_1:82329209-82329228 Msa0577960:CDS 45.0%
ATTCCAGCATGCAACTCCAA+AGG + chr4_1:82329215-82329234 None:intergenic 45.0%
TGGAATCACTCTTCTTGAGC+CGG - chr4_1:82329229-82329248 Msa0577960:CDS 45.0%
! CCACCTCTAAGAGGGATAAA+TGG + chr4_1:82329442-82329461 None:intergenic 45.0%
CCATTTATCCCTCTTAGAGG+TGG - chr4_1:82329439-82329458 Msa0577960:CDS 45.0%
! TAGACAGACCACCTCTAAGA+GGG + chr4_1:82329450-82329469 None:intergenic 45.0%
ATAGACAGACCACCTCTAAG+AGG + chr4_1:82329451-82329470 None:intergenic 45.0%
!! AAATTAAAAATAAAATATAG+GGG + chr4_1:82325148-82325167 None:intergenic 5.0%
GACAACTGACAGGAATCGGA+TGG + chr4_1:82323601-82323620 None:intergenic 50.0%
GATCGCTCGCAATTGCCAAT+TGG + chr4_1:82323658-82323677 None:intergenic 50.0%
TCTTTGCCATCCCTGGTGTT+TGG + chr4_1:82323936-82323955 None:intergenic 50.0%
! CGTTGTTGTCGTCGTCGTTT+TGG + chr4_1:82323974-82323993 None:intergenic 50.0%
ATCTTCGACCAAGTCCCACA+GGG + chr4_1:82324037-82324056 None:intergenic 50.0%
ATCGCGGCAGATATTCGATG+AGG - chr4_1:82324055-82324074 Msa0577960:intron 50.0%
GGGATGGCAAACTCACACAT+AGG + chr4_1:82324173-82324192 None:intergenic 50.0%
ATGTGTGAGTTTGCCATCCC+TGG - chr4_1:82324173-82324192 Msa0577960:intron 50.0%
AGTATTCTGAGCACCAGGGA+TGG + chr4_1:82324189-82324208 None:intergenic 50.0%
!! GTTGGTGCTACTAGCCGTAT+AGG - chr4_1:82324221-82324240 Msa0577960:intron 50.0%
GTCCGTAAACTCATGCTCAG+GGG - chr4_1:82324254-82324273 Msa0577960:intron 50.0%
GGTAAGGAAGGCAGATGAAG+AGG - chr4_1:82324660-82324679 Msa0577960:intron 50.0%
AAGGAAGGCAGATGAAGAGG+TGG - chr4_1:82324663-82324682 Msa0577960:intron 50.0%
ACAGCAGCCTTGACTGTGTT+TGG + chr4_1:82324739-82324758 None:intergenic 50.0%
ACAGTCAAGGCTGCTGTAGA+AGG - chr4_1:82324742-82324761 Msa0577960:intron 50.0%
! CTCTTCAGGGTTGATCAGCA+AGG - chr4_1:82324817-82324836 Msa0577960:intron 50.0%
GATGGATGGGAAGTTCGTCA+AGG - chr4_1:82324958-82324977 Msa0577960:CDS 50.0%
TCTAGAAGCTGGTCCTTCAG+GGG - chr4_1:82325385-82325404 Msa0577960:intron 50.0%
ACGGTTTGAGCCTAGAAGAC+AGG - chr4_1:82325690-82325709 Msa0577960:intron 50.0%
ACATTTGAACCTCGAGGCAG+TGG - chr4_1:82325921-82325940 Msa0577960:intron 50.0%
GACAGAGGAGCAAGGAATCA+GGG + chr4_1:82326044-82326063 None:intergenic 50.0%
AGACAGAGGAGCAAGGAATC+AGG + chr4_1:82326045-82326064 None:intergenic 50.0%
! TTGTGGCGGGAAGAATAGAC+GGG + chr4_1:82326208-82326227 None:intergenic 50.0%
TGCGCAGAAAAAAAGAGGGG+GGG + chr4_1:82326370-82326389 None:intergenic 50.0%
CTGCGCAGAAAAAAAGAGGG+GGG + chr4_1:82326371-82326390 None:intergenic 50.0%
GCTGAAAGCTTCTCGAATCC+TGG + chr4_1:82326500-82326519 None:intergenic 50.0%
CATGTGAATATGCCGCAGAC+TGG - chr4_1:82327452-82327471 Msa0577960:intron 50.0%
TCGGTTTCTTGTCCAGTCTG+CGG + chr4_1:82327467-82327486 None:intergenic 50.0%
! TTGGTATTGAGCCTTCCAGG+CGG - chr4_1:82327513-82327532 Msa0577960:intron 50.0%
! TTTAAGAACTTGCTCCCGCC+TGG + chr4_1:82327531-82327550 None:intergenic 50.0%
GCCTGGAGAATTCGGGATTA+AGG + chr4_1:82327649-82327668 None:intergenic 50.0%
TAATCCCGAATTCTCCAGGC+AGG - chr4_1:82327649-82327668 Msa0577960:CDS 50.0%
TTCACCTGCCTGGAGAATTC+GGG + chr4_1:82327656-82327675 None:intergenic 50.0%
CTTCACCTGCCTGGAGAATT+CGG + chr4_1:82327657-82327676 None:intergenic 50.0%
TCAAGGAATCTTCACCTGCC+TGG + chr4_1:82327666-82327685 None:intergenic 50.0%
TCCTTGAGAAGATCTGGGCT+TGG - chr4_1:82327679-82327698 Msa0577960:CDS 50.0%
TCCAAGCCCAGATCTTCTCA+AGG + chr4_1:82327683-82327702 None:intergenic 50.0%
AACTGTACCTGCAATGGACC+CGG + chr4_1:82327721-82327740 None:intergenic 50.0%
AGGGAAAGAAGATGGGTGAG+TGG + chr4_1:82327908-82327927 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr4_1:82328019-82328038 None:intergenic 50.0%
CCGGTATATCTGAGCCAGTT+TGG + chr4_1:82328209-82328228 None:intergenic 50.0%
TACGAGTACGTTGCTGAGGA+TGG - chr4_1:82328721-82328740 Msa0577960:intron 50.0%
ACGAGTACGTTGCTGAGGAT+GGG - chr4_1:82328722-82328741 Msa0577960:intron 50.0%
! TAATCAGGTTGCCCACTTGC+CGG - chr4_1:82328839-82328858 Msa0577960:intron 50.0%
TTCTCCAAGACAGAGAGAGC+TGG + chr4_1:82328888-82328907 None:intergenic 50.0%
GACGGAACCTTACTTGTAGG+AGG + chr4_1:82328944-82328963 None:intergenic 50.0%
ATCACTCTTCTTGAGCCGGA+AGG - chr4_1:82329233-82329252 Msa0577960:CDS 50.0%
TCTTCTTGAGCCGGAAGGAT+AGG - chr4_1:82329238-82329257 Msa0577960:CDS 50.0%
CTTCTTGAGCCGGAAGGATA+GGG - chr4_1:82329239-82329258 Msa0577960:CDS 50.0%
TTCTTGAGCCGGAAGGATAG+GGG - chr4_1:82329240-82329259 Msa0577960:CDS 50.0%
TCTACCATCCCCTATCCTTC+CGG + chr4_1:82329251-82329270 None:intergenic 50.0%
ACTCTATGGAGACCCAACCA+AGG - chr4_1:82329380-82329399 Msa0577960:CDS 50.0%
CTCTATGGAGACCCAACCAA+GGG - chr4_1:82329381-82329400 Msa0577960:CDS 50.0%
CGCTCGCAATTGCCAATTGG+AGG + chr4_1:82323655-82323674 None:intergenic 55.0%
!!! GGAGCGGGTATGCTGCTTTT+TGG + chr4_1:82323880-82323899 None:intergenic 55.0%
CAGTCGTTGTACAGAGGAGC+GGG + chr4_1:82323895-82323914 None:intergenic 55.0%
GCAGTCGTTGTACAGAGGAG+CGG + chr4_1:82323896-82323915 None:intergenic 55.0%
AGGAGGCAGTCGTTGTACAG+AGG + chr4_1:82323901-82323920 None:intergenic 55.0%
! TTTGGAGCAGCGGCTATAGG+AGG + chr4_1:82323918-82323937 None:intergenic 55.0%
! GTGTTTGGAGCAGCGGCTAT+AGG + chr4_1:82323921-82323940 None:intergenic 55.0%
! ATCCCTGGTGTTTGGAGCAG+CGG + chr4_1:82323928-82323947 None:intergenic 55.0%
! CTTGCTGTCTTTGCCATCCC+TGG + chr4_1:82323943-82323962 None:intergenic 55.0%
GATCTTCGACCAAGTCCCAC+AGG + chr4_1:82324038-82324057 None:intergenic 55.0%
! TGGGACTTGGTCGAAGATCG+CGG - chr4_1:82324039-82324058 Msa0577960:intron 55.0%
! CTGGACTGGGTCAGATCTCT+AGG - chr4_1:82324093-82324112 Msa0577960:intron 55.0%
GCTCAGGGGTTACTCTGTCA+AGG - chr4_1:82324268-82324287 Msa0577960:intron 55.0%
AGGTGGTAGAGCTGCTTCCA+AGG - chr4_1:82324680-82324699 Msa0577960:CDS 55.0%
AGTGATAGTTGAGCGGGCAG+TGG + chr4_1:82324791-82324810 None:intergenic 55.0%
ACTGCCCGCTCAACTATCAC+TGG - chr4_1:82324790-82324809 Msa0577960:intron 55.0%
! AATTGGCTCAGTTGCGCGCT+GGG - chr4_1:82324881-82324900 Msa0577960:intron 55.0%
! GAGGGCTTGGTTCTCTCTGT+TGG - chr4_1:82325335-82325354 Msa0577960:intron 55.0%
! GGCTTGGTTCTCTCTGTTGG+CGG - chr4_1:82325338-82325357 Msa0577960:intron 55.0%
GTTCTCTCTGTTGGCGGCAA+TGG - chr4_1:82325344-82325363 Msa0577960:intron 55.0%
!! CTCTGACTTGGATCCCCTGA+AGG + chr4_1:82325401-82325420 None:intergenic 55.0%
!! GGGGGGAAGGGGTATTATGT+AGG + chr4_1:82326086-82326105 None:intergenic 55.0%
TGGACGTAATGGTCCACTGG+AGG + chr4_1:82326141-82326160 None:intergenic 55.0%
! TGTGGCGGGAAGAATAGACG+GGG + chr4_1:82326207-82326226 None:intergenic 55.0%
AGAAAAAAAGAGGGGGGGGG+GGG + chr4_1:82326365-82326384 None:intergenic 55.0%
CAGAAAAAAAGAGGGGGGGG+GGG + chr4_1:82326366-82326385 None:intergenic 55.0%
GCAGAAAAAAAGAGGGGGGG+GGG + chr4_1:82326367-82326386 None:intergenic 55.0%
CGCAGAAAAAAAGAGGGGGG+GGG + chr4_1:82326368-82326387 None:intergenic 55.0%
GCGCAGAAAAAAAGAGGGGG+GGG + chr4_1:82326369-82326388 None:intergenic 55.0%
! GCCTTGGTATTGAGCCTTCC+AGG - chr4_1:82327510-82327529 Msa0577960:intron 55.0%
GCCTGGAAGGCTCAATACCA+AGG + chr4_1:82327514-82327533 None:intergenic 55.0%
! TGGTATTGAGCCTTCCAGGC+GGG - chr4_1:82327514-82327533 Msa0577960:intron 55.0%
GGGTATATGGAGGGGAAGGA+AGG + chr4_1:82327979-82327998 None:intergenic 55.0%
ACCAAATACTCCCTCCGTCC+CGG - chr4_1:82328002-82328021 Msa0577960:intron 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr4_1:82328015-82328034 None:intergenic 55.0%
CTGGCTCAGATATACCGGGA+CGG - chr4_1:82328211-82328230 Msa0577960:intron 55.0%
CTCAGATATACCGGGACGGA+GGG - chr4_1:82328215-82328234 Msa0577960:intron 55.0%
ACATAGTACTCCCTCCGTCC+CGG + chr4_1:82328228-82328247 None:intergenic 55.0%
TGCTGACAGGAAGAACCTGG+TGG - chr4_1:82328301-82328320 Msa0577960:CDS 55.0%
GCTGACAGGAAGAACCTGGT+GGG - chr4_1:82328302-82328321 Msa0577960:CDS 55.0%
! GGGCATCAGTTGTGCTGATG+TGG - chr4_1:82328559-82328578 Msa0577960:CDS 55.0%
GACACCAGCTCTCTCTGTCT+TGG - chr4_1:82328881-82328900 Msa0577960:intron 55.0%
ATACCTGAACATCCCTGGCC+TGG - chr4_1:82328910-82328929 Msa0577960:intron 55.0%
GAGGTATGTTCTCCAGGCCA+GGG + chr4_1:82328925-82328944 None:intergenic 55.0%
TAGCCGCTGCTCCAAACACC+AGG - chr4_1:82323922-82323941 Msa0577960:intron 60.0%
AGCCGCTGCTCCAAACACCA+GGG - chr4_1:82323923-82323942 Msa0577960:intron 60.0%
GCTGCTCCAAACACCAGGGA+TGG - chr4_1:82323927-82323946 Msa0577960:intron 60.0%
TCTCGACGACGTCAACCCTG+TGG - chr4_1:82324019-82324038 Msa0577960:intron 60.0%
CTCGACGACGTCAACCCTGT+GGG - chr4_1:82324020-82324039 Msa0577960:intron 60.0%
GACGTCAACCCTGTGGGACT+TGG - chr4_1:82324026-82324045 Msa0577960:intron 60.0%
! CAATTGGCTCAGTTGCGCGC+TGG - chr4_1:82324880-82324899 Msa0577960:intron 60.0%
CTAATGGAGCCACTGCCTCG+AGG + chr4_1:82325933-82325952 None:intergenic 60.0%
AAAAAAAGAGGGGGGGGGGG+GGG + chr4_1:82326363-82326382 None:intergenic 60.0%
GAAAAAAAGAGGGGGGGGGG+GGG + chr4_1:82326364-82326383 None:intergenic 60.0%
! AGAACTTGCTCCCGCCTGGA+AGG + chr4_1:82327527-82327546 None:intergenic 60.0%
AGTTCGTCCGGGTCCATTGC+AGG - chr4_1:82327711-82327730 Msa0577960:intron 60.0%
!! TCCGGGACGGAGGGAGTATT+TGG + chr4_1:82328006-82328025 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr4_1:82328016-82328035 None:intergenic 60.0%
GCTCAGATATACCGGGACGG+AGG - chr4_1:82328214-82328233 Msa0577960:intron 60.0%
ATTAGAGCACGCTGCCCACC+AGG + chr4_1:82328319-82328338 None:intergenic 60.0%
TCTCCAGGCCAGGGATGTTC+AGG + chr4_1:82328916-82328935 None:intergenic 60.0%
! GGAGGTATGTTCTCCAGGCC+AGG + chr4_1:82328926-82328945 None:intergenic 60.0%
TGAGCCGGAAGGATAGGGGA+TGG - chr4_1:82329244-82329263 Msa0577960:CDS 60.0%
AAAAAAGAGGGGGGGGGGGG+GGG + chr4_1:82326362-82326381 None:intergenic 65.0%
AAAAAGAGGGGGGGGGGGGG+GGG + chr4_1:82326361-82326380 None:intergenic 70.0%
AAAAGAGGGGGGGGGGGGGG+GGG + chr4_1:82326360-82326379 None:intergenic 75.0%
! AAAGAGGGGGGGGGGGGGGG+GGG + chr4_1:82326359-82326378 None:intergenic 80.0%
! AAGAGGGGGGGGGGGGGGGG+GGG + chr4_1:82326358-82326377 None:intergenic 85.0%
! AGAGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326357-82326376 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326355-82326374 None:intergenic 95.0%
! GAGGGGGGGGGGGGGGGGGG+GGG + chr4_1:82326356-82326375 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 82323490 82329823 82323490 ID=Msa0577960;Name=Msa0577960
chr4_1 mRNA 82323490 82329823 82323490 ID=Msa0577960-mRNA-1;Parent=Msa0577960;Name=Msa0577960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=260|1|1|1|0.91|0.84|13|232|588
chr4_1 exon 82323490 82323688 82323490 ID=Msa0577960-mRNA-1:exon:29816;Parent=Msa0577960-mRNA-1
chr4_1 exon 82324363 82324467 82324363 ID=Msa0577960-mRNA-1:exon:29815;Parent=Msa0577960-mRNA-1
chr4_1 exon 82324551 82324598 82324551 ID=Msa0577960-mRNA-1:exon:29814;Parent=Msa0577960-mRNA-1
chr4_1 exon 82324676 82324753 82324676 ID=Msa0577960-mRNA-1:exon:29813;Parent=Msa0577960-mRNA-1
chr4_1 exon 82324947 82325003 82324947 ID=Msa0577960-mRNA-1:exon:29812;Parent=Msa0577960-mRNA-1
chr4_1 exon 82325581 82325646 82325581 ID=Msa0577960-mRNA-1:exon:29811;Parent=Msa0577960-mRNA-1
chr4_1 exon 82325754 82325843 82325754 ID=Msa0577960-mRNA-1:exon:29810;Parent=Msa0577960-mRNA-1
chr4_1 exon 82326765 82326845 82326765 ID=Msa0577960-mRNA-1:exon:29809;Parent=Msa0577960-mRNA-1
chr4_1 exon 82327602 82327706 82327602 ID=Msa0577960-mRNA-1:exon:29808;Parent=Msa0577960-mRNA-1
chr4_1 exon 82327847 82327982 82327847 ID=Msa0577960-mRNA-1:exon:29807;Parent=Msa0577960-mRNA-1
chr4_1 exon 82328067 82328142 82328067 ID=Msa0577960-mRNA-1:exon:29806;Parent=Msa0577960-mRNA-1
chr4_1 exon 82328241 82328658 82328241 ID=Msa0577960-mRNA-1:exon:29805;Parent=Msa0577960-mRNA-1
chr4_1 exon 82329024 82329823 82329024 ID=Msa0577960-mRNA-1:exon:29804;Parent=Msa0577960-mRNA-1
chr4_1 five_prime_UTR 82329564 82329823 82329564 ID=Msa0577960-mRNA-1:five_prime_utr;Parent=Msa0577960-mRNA-1
chr4_1 CDS 82329024 82329563 82329024 ID=Msa0577960-mRNA-1:cds;Parent=Msa0577960-mRNA-1
chr4_1 CDS 82328241 82328658 82328241 ID=Msa0577960-mRNA-1:cds;Parent=Msa0577960-mRNA-1
chr4_1 CDS 82328067 82328142 82328067 ID=Msa0577960-mRNA-1:cds;Parent=Msa0577960-mRNA-1
chr4_1 CDS 82327847 82327982 82327847 ID=Msa0577960-mRNA-1:cds;Parent=Msa0577960-mRNA-1
chr4_1 CDS 82327602 82327706 82327602 ID=Msa0577960-mRNA-1:cds;Parent=Msa0577960-mRNA-1
chr4_1 CDS 82326765 82326845 82326765 ID=Msa0577960-mRNA-1:cds;Parent=Msa0577960-mRNA-1
chr4_1 CDS 82325754 82325843 82325754 ID=Msa0577960-mRNA-1:cds;Parent=Msa0577960-mRNA-1
chr4_1 CDS 82325581 82325646 82325581 ID=Msa0577960-mRNA-1:cds;Parent=Msa0577960-mRNA-1
chr4_1 CDS 82324947 82325003 82324947 ID=Msa0577960-mRNA-1:cds;Parent=Msa0577960-mRNA-1
chr4_1 CDS 82324676 82324753 82324676 ID=Msa0577960-mRNA-1:cds;Parent=Msa0577960-mRNA-1
chr4_1 CDS 82324551 82324598 82324551 ID=Msa0577960-mRNA-1:cds;Parent=Msa0577960-mRNA-1
chr4_1 CDS 82324396 82324467 82324396 ID=Msa0577960-mRNA-1:cds;Parent=Msa0577960-mRNA-1
chr4_1 three_prime_UTR 82324363 82324395 82324363 ID=Msa0577960-mRNA-1:three_prime_utr;Parent=Msa0577960-mRNA-1
chr4_1 three_prime_UTR 82323490 82323688 82323490 ID=Msa0577960-mRNA-1:three_prime_utr;Parent=Msa0577960-mRNA-1
Gene Sequence

>Msa0577960

ATGAGTACCTCACCTTCAGCAACAACAATTGCTGCTGCTGCTGTGTACTCAAAGTATCATAATATTAATACAACACTTTCACTTTCAGGAGCCTCCTCACAAATCAACACTACTTTCCTCTCATACACCAAAAAGCAGCATACCCGCTCCTCTGTACAACGACTGCCTCCTATAGCCGCTGCTCCAAACACCAGGGATGGCAAAGACAGCAAGAACAACACCCAAAACGACGACGACAACAACGATGACAAACAATCTGTTTCTCTTAGTCTCGACGACGTCAACCCTGTGGGACTTGGTCGAAGATCGCGGCAGATATTCGATGAGGTTTGGAGAAAATTCTCTGGACTGGGTCAGATCTCTAGGACTATACGTACTGATGATGTGGAGGCACTAGATGCTCTTCTTGTTCGTGAAGGTCCTATGTGTGAGTTTGCCATCCCTGGTGCTCAGAATACTACTGTACTTGTTGTTGGTGCTACTAGCCGTATAGGTCGAATTGTTGTCCGTAAACTCATGCTCAGGGGTTACTCTGTCAAGGCTTTGGTAAGGAAGGCAGATGAAGAGGTGGTAGAGCTGCTTCCAAGGTCAGTAGAGATAGTGATTGGGGATGTTGGTGATCCAAACACAGTCAAGGCTGCTGTAGAAGGCTGCAATAAAATCATATATTGTGCCACTGCCCGCTCAACTATCACTGGTGATCTCTTCAGGGTTGATCAGCAAGGAGTTTATAATCTATCTAAAGCATTTCAGGATCACAACAATCAATTGGCTCAGTTGCGCGCTGGGAAAAGCAGCAAAAGTAAGCTTACAATTGCTAAATTTAAATCTGAATCTTCACTGGATGGATGGGAAGTTCGTCAAGGAACTTACTTCGAAGATGTAGTTACCTCAAAATATGATGGAGGGATGGATGCCAAATTTGAGTTCACTGAGAATGGAGCTGCTGTTTTCTCAGGGTATGTCTTCAATAGAGGTGGCTATGTAGAACTGTCAAAAAAGCTTTCTCTACCTTTGGGTAGTACTCTTGACAGGTATGAGGGCTTGGTTCTCTCTGTTGGCGGCAATGGAAGACCTTATGTATTAATTCTAGAAGCTGGTCCTTCAGGGGATCCAAGTCAGAGTAAATTGTATTTTGCAAGAATTAGTACAAAAGTGGGATTTTGTAGGGTTAGAGTGCCATTTTCATCATTTCGTCCGGTGAAACCAGATCATCCAGTTTTAGACCCTTTTCTTGTACATACATTAACAATACGGTTTGAGCCTAGAAGACAGAGGTCTGATATAGTAAATGCGTCAAAGAACCAGGATTCGAGAAGCTTTCAGCTAATATTGGAATATATAAAAGCCTTGCCTACTGGACAAGAAACCGATTTTGTCTTAGTTTCATGTTCTGGCCTTGGTATTGAGCCTTCCAGGCGGGAGCAAGTTCTTAAAGCCAAGAGGGCAGGTGAAGATTCCTTGAGAAGATCTGGGCTTGGATACACAATAGTTCGTCCGGGTCCATTGCAGGAAGAACCTGGTGGGCAGCGTGCTCTAATATTTGATCAAGGAGACAGAATATCTCGGGGCATCAGTTGTGCTGATGTGGCCGATATATGTGTGAAGGCACTCCATGATTCAACTGCAAGAAACAAAAGCTTTGATGTATGTTACGAGTACGTTGCTGAGGATGGGAATGAGCTTTATGAGCTGGTTGCCCACTTGCCGGACAAAGCAAATAACTATCTGACACCAGCTCTCTCTGTCTTGGAGAAGAATACCTGA
Protein sequence

>Msa0577960

MSTSPSATTIAAAAVYSKYHNINTTLSLSGASSQINTTFLSYTKKQHTRSSVQRLPPIAAAPNTRDGKDSKNNTQNDDDNNDDKQSVSLSLDDVNPVGLGRRSRQIFDEVWRKFSGLGQISRTIRTDDVEALDALLVREGPMCEFAIPGAQNTTVLVVGATSRIGRIVVRKLMLRGYSVKALVRKADEEVVELLPRSVEIVIGDVGDPNTVKAAVEGCNKIIYCATARSTITGDLFRVDQQGVYNLSKAFQDHNNQLAQLRAGKSSKSKLTIAKFKSESSLDGWEVRQGTYFEDVVTSKYDGGMDAKFEFTENGAAVFSGYVFNRGGYVELSKKLSLPLGSTLDRYEGLVLSVGGNGRPYVLILEAGPSGDPSQSKLYFARISTKVGFCRVRVPFSSFRPVKPDHPVLDPFLVHTLTIRFEPRRQRSDIVNASKNQDSRSFQLILEYIKALPTGQETDFVLVSCSGLGIEPSRREQVLKAKRAGEDSLRRSGLGYTIVRPGPLQEEPGGQRALIFDQGDRISRGISCADVADICVKALHDSTARNKSFDVCYEYVAEDGNELYELVAHLPDKANNYLTPALSVLEKNT*