AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0625550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625550 MtrunA17_Chr4g0000041 97.470 593 6 4 1 588 1 589 0.0 1169
Msa0625550 MtrunA17_Chr8g0379501 51.351 74 35 1 477 550 81 153 7.08e-14 70.9
Msa0625550 MtrunA17_Chr8g0379511 28.028 289 170 13 155 416 126 403 1.96e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625550 AT1G16720.1 83.034 501 85 0 88 588 98 598 0.0 872
Msa0625550 AT1G16720.2 77.903 534 85 1 88 588 98 631 0.0 855
Msa0625550 AT1G16720.3 82.289 463 82 0 88 550 98 560 0.0 798
Msa0625550 AT4G18810.1 29.694 458 255 23 139 550 113 549 2.62e-25 110
Msa0625550 AT4G18810.2 29.694 458 255 23 139 550 113 549 2.76e-25 110

Find 177 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACAACACTTTCACTTTC+AGG 0.166841 4_3:-4636036 Msa0625550:CDS
CGTTGTTGTCGTCGTCGTTT+TGG 0.174964 4_3:+4635881 None:intergenic
TAATCTATCTAAAGCATTTC+AGG 0.177804 4_3:-4635021 Msa0625550:CDS
ATTCTCAGTGAACTCAAATT+TGG 0.188350 4_3:+4634836 None:intergenic
CGTGCTTCCACGTACTAAAT+AGG 0.210340 4_3:+4636330 None:intergenic
TTTGTCTTAGTTTCATGTTC+TGG 0.244048 4_3:-4632392 Msa0625550:CDS
TTGGACATTACCTGTCTTCT+AGG 0.270556 4_3:+4634167 None:intergenic
CTATCACTGGTGATCTCTTC+AGG 0.274699 4_3:-4635064 Msa0625550:CDS
GAGAAGCTTTCAGCTAATAT+TGG 0.279017 4_3:-4633374 Msa0625550:CDS
ATTCTAGAAGCTGGTCCTTC+AGG 0.280246 4_3:-4634484 Msa0625550:CDS
GCCTTGGTATTGAGCCTTCC+AGG 0.286621 4_3:-4632370 Msa0625550:CDS
ACAGCAGCCTTGACTGTGTT+TGG 0.292381 4_3:+4635131 None:intergenic
TGTCAACTTCAAATCTGAAT+TGG 0.300935 4_3:+4636228 None:intergenic
ACCGGACGAAATGATGAAAA+TGG 0.315241 4_3:+4634251 None:intergenic
AGATATTACAGGGGACTAAT+TGG 0.315769 4_3:-4630160 Msa0625550:three_prime_UTR
TCTTTGCCATCCCTGGTGTT+TGG 0.318685 4_3:+4635919 None:intergenic
AAAGAAAATGTAGATATTAC+AGG 0.331116 4_3:-4630171 Msa0625550:three_prime_UTR
AACCCCTGAGCATGAGTTTA+CGG 0.337945 4_3:+4635596 None:intergenic
TTAGTTTCATGTTCTGGCCT+TGG 0.337954 4_3:-4632386 Msa0625550:CDS
GAAGATTCCTTGAGAAGATC+TGG 0.343993 4_3:-4632206 Msa0625550:CDS
CTTGCTGTCTTTGCCATCCC+TGG 0.353209 4_3:+4635912 None:intergenic
TCTCCAGGCCAGGGATGTTC+AGG 0.370394 4_3:+4630965 None:intergenic
TGCAAGAATTAGTACAAAAG+TGG 0.371055 4_3:-4634434 Msa0625550:CDS
GTTCTCTCTGTTGGCGGCAA+TGG 0.376433 4_3:-4634523 Msa0625550:CDS
AGTTCGTCCGGGTCCATTGC+AGG 0.386123 4_3:-4632168 Msa0625550:intron
GTTAATGTATGTACAAGAAA+AGG 0.389677 4_3:+4634203 None:intergenic
AAATTTGAGTTCACTGAGAA+TGG 0.390202 4_3:-4634834 Msa0625550:CDS
TAATCAGGTTGCCCACTTGC+CGG 0.392057 4_3:-4631039 Msa0625550:intron
ACAAGAAAAGGGTCTAAAAC+TGG 0.404655 4_3:+4634215 None:intergenic
GGACAACAATTCGACCTATA+CGG 0.404869 4_3:+4635617 None:intergenic
TTCTAGAAGCTGGTCCTTCA+GGG 0.411008 4_3:-4634483 Msa0625550:CDS
GGGTCTAAAACTGGATGATC+TGG 0.417511 4_3:+4634224 None:intergenic
TCATGATAGGTATGAGGGCT+TGG 0.424833 4_3:-4634545 Msa0625550:intron
AATACTACTGTACTTGTTGT+TGG 0.426072 4_3:-4635649 Msa0625550:CDS
CTGAATCTTCACTGGATGGA+TGG 0.426462 4_3:-4634923 Msa0625550:CDS
TTGGAGAAAATTCTCTGGAC+TGG 0.426876 4_3:-4635773 Msa0625550:CDS
CTGGACTGGGTCAGATCTCT+AGG 0.427807 4_3:-4635759 Msa0625550:CDS
GACTGACAACTGACAGGAAT+CGG 0.427951 4_3:+4636250 None:intergenic
GTTGGTGCTACTAGCCGTAT+AGG 0.435219 4_3:-4635631 Msa0625550:CDS
TGTTTCTTGCAGTTGAATCA+TGG 0.435790 4_3:+4631274 None:intergenic
GAGTGCCTTCACACATATAT+CGG 0.436679 4_3:+4631296 None:intergenic
TGGATACACAATAGTTCGTC+CGG 0.437257 4_3:-4632180 Msa0625550:CDS
AGATAGTTATTTGCTTTGTC+CGG 0.438211 4_3:+4631020 None:intergenic
ATTTAAATCTGAATCTTCAC+TGG 0.438895 4_3:-4634931 Msa0625550:CDS
TTAGGGTATGTCTTCAATAG+AGG 0.440898 4_3:-4634700 Msa0625550:intron
TTGTCCGTAAACTCATGCTC+AGG 0.442258 4_3:-4635600 Msa0625550:CDS
GGCAGATATTCGATGAGGTT+TGG 0.442586 4_3:-4635792 Msa0625550:CDS
TCAGGATCACAACAATCAAT+TGG 0.444558 4_3:-4635003 Msa0625550:CDS
GTGCTTCCACGTACTAAATA+GGG 0.444643 4_3:+4636331 None:intergenic
GCTGAAAGCTTCTCGAATCC+TGG 0.446728 4_3:+4633383 None:intergenic
GAGATAGTGATTGGGGATGT+TGG 0.447831 4_3:-4635158 Msa0625550:CDS
AACAAATGAACCTACCCTCT+TGG 0.448430 4_3:+4632328 None:intergenic
AATTGGCTCAGTTGCGCGCT+GGG 0.448540 4_3:-4634986 Msa0625550:CDS
GTGTTTGGAGCAGCGGCTAT+AGG 0.454033 4_3:+4635934 None:intergenic
ACAGTCAAGGCTGCTGTAGA+AGG 0.459186 4_3:-4635125 Msa0625550:CDS
GAGGTTTGGAGAAAATTCTC+TGG 0.460565 4_3:-4635778 Msa0625550:CDS
TCCTTGAGAAGATCTGGGCT+TGG 0.460859 4_3:-4632200 Msa0625550:CDS
ATGTGTGAGTTTGCCATCCC+TGG 0.462288 4_3:-4635679 Msa0625550:CDS
AGGTCAGTAGAGATAGTGAT+TGG 0.469344 4_3:-4635167 Msa0625550:CDS
TTGTACATACATTAACAATA+CGG 0.470364 4_3:-4634196 Msa0625550:CDS
TTGTAGGAGGTATGTTCTCC+AGG 0.472948 4_3:+4630950 None:intergenic
AAATACAATTTACTCTGACT+TGG 0.474303 4_3:+4634457 None:intergenic
GGAGGTATGTTCTCCAGGCC+AGG 0.475726 4_3:+4630955 None:intergenic
TTTAAGAACTTGCTCCCGCC+TGG 0.479129 4_3:+4632352 None:intergenic
CATCTGTCATGATAGGTATG+AGG 0.480362 4_3:-4634551 Msa0625550:intron
GACGTCAACCCTGTGGGACT+TGG 0.481549 4_3:-4635826 Msa0625550:CDS
GACACCAGCTCTCTCTGTCT+TGG 0.482972 4_3:-4630997 Msa0625550:CDS
ACATGAAACTAAGACAAAAT+CGG 0.484449 4_3:+4632397 None:intergenic
TATGTATTAATTCTAGAAGC+TGG 0.484676 4_3:-4634493 Msa0625550:CDS
ATTAGAGCACGCTGCCCACC+AGG 0.489698 4_3:+4631562 None:intergenic
TGGAGAAAATTCTCTGGACT+GGG 0.490104 4_3:-4635772 Msa0625550:CDS
CAATTGGCTCAGTTGCGCGC+TGG 0.490703 4_3:-4634987 Msa0625550:CDS
ATCCCTGGTGTTTGGAGCAG+CGG 0.491895 4_3:+4635927 None:intergenic
TACGAGTACGTTGCTGAGGA+TGG 0.493701 4_3:-4631157 Msa0625550:CDS
GAGGGCTTGGTTCTCTCTGT+TGG 0.494157 4_3:-4634532 Msa0625550:CDS
ATACCTGAACATCCCTGGCC+TGG 0.496705 4_3:-4630968 Msa0625550:exon
TGAATCTTCACTGGATGGAT+GGG 0.497784 4_3:-4634922 Msa0625550:CDS
GGTCAGTAGAGATAGTGATT+GGG 0.500030 4_3:-4635166 Msa0625550:CDS
GCAAGAATTAGTACAAAAGT+GGG 0.501200 4_3:-4634433 Msa0625550:CDS
TTAATGTATGTACAAGAAAA+GGG 0.503140 4_3:+4634204 None:intergenic
GATCGCTCGCAATTGCCAAT+TGG 0.504803 4_3:+4636197 None:intergenic
TGGTATTGAGCCTTCCAGGC+GGG 0.505603 4_3:-4632366 Msa0625550:CDS
ATCACCAGTGATAGTTGAGC+GGG 0.506989 4_3:+4635073 None:intergenic
TAGCCGCTGCTCCAAACACC+AGG 0.507877 4_3:-4635930 Msa0625550:CDS
CGCTCGCAATTGCCAATTGG+AGG 0.507964 4_3:+4636200 None:intergenic
AAATCATAGTAATTACACTT+TGG 0.508911 4_3:-4630077 Msa0625550:three_prime_UTR
ATCACTATCTCTACTGACCT+TGG 0.510201 4_3:+4635170 None:intergenic
GCTTCTAGAATTAATACATA+AGG 0.513253 4_3:+4634496 None:intergenic
CTGCAATGAAGGCTTTGGTA+AGG 0.516682 4_3:-4635223 Msa0625550:intron
CTTTGGGTAGTACTCTTGAC+AGG 0.517774 4_3:-4634642 Msa0625550:intron
TATCACTGGTGATCTCTTCA+GGG 0.525143 4_3:-4635063 Msa0625550:CDS
CAGTCGTTGTACAGAGGAGC+GGG 0.528087 4_3:+4635960 None:intergenic
AAGATTCCTTGAGAAGATCT+GGG 0.529508 4_3:-4632205 Msa0625550:CDS
GATCTTCGACCAAGTCCCAC+AGG 0.531721 4_3:+4635817 None:intergenic
GTAGTTACCTCAAAATATGA+TGG 0.532512 4_3:-4634870 Msa0625550:CDS
AAAAGAAACTGTACCTGCAA+TGG 0.533749 4_3:+4632155 None:intergenic
AACTGTACCTGCAATGGACC+CGG 0.533940 4_3:+4632161 None:intergenic
ATCAAGGAGACAGAATATCT+CGG 0.538498 4_3:-4631534 Msa0625550:CDS
GTTGACACAAGTCCTCCAAT+TGG 0.538762 4_3:-4636212 Msa0625550:five_prime_UTR
ACTGGATGATCTGGTTTCAC+CGG 0.539360 4_3:+4634233 None:intergenic
TGTCCGTAAACTCATGCTCA+GGG 0.540648 4_3:-4635599 Msa0625550:CDS
ACAGTAGTATTCTGAGCACC+AGG 0.541242 4_3:+4635661 None:intergenic
CTCTGACTTGGATCCCCTGA+AGG 0.545090 4_3:+4634469 None:intergenic
GAATTGGACTGACAACTGAC+AGG 0.546532 4_3:+4636244 None:intergenic
AAGGAAGGCAGATGAAGAGG+TGG 0.546607 4_3:-4635204 Msa0625550:CDS
GTCAGTAGAGATAGTGATTG+GGG 0.546856 4_3:-4635165 Msa0625550:CDS
GAAAGTAGTGTTGATTTGTG+AGG 0.548084 4_3:+4636008 None:intergenic
TATTTGCTTTGTCCGGCAAG+TGG 0.553339 4_3:+4631027 None:intergenic
TGGGAATGAGCTTTATGAGC+TGG 0.553677 4_3:-4631137 Msa0625550:intron
AGTGATAGTTGAGCGGGCAG+TGG 0.554082 4_3:+4635079 None:intergenic
GGCTTGGTTCTCTCTGTTGG+CGG 0.554436 4_3:-4634529 Msa0625550:CDS
AGGTGGTAGAGCTGCTTCCA+AGG 0.555546 4_3:-4635187 Msa0625550:CDS
GACTATACGTACTGATGATG+TGG 0.555620 4_3:-4635737 Msa0625550:CDS
AAATCTGAATCTTCACTGGA+TGG 0.556032 4_3:-4634927 Msa0625550:CDS
ACGAGTACGTTGCTGAGGAT+GGG 0.556225 4_3:-4631156 Msa0625550:CDS
AGAACTTGCTCCCGCCTGGA+AGG 0.556592 4_3:+4632356 None:intergenic
TCAAGGAGACAGAATATCTC+GGG 0.556593 4_3:-4631533 Msa0625550:intron
GAAGAATACCTGAACATCCC+TGG 0.556642 4_3:-4630973 Msa0625550:exon
ATCTGTCATGATAGGTATGA+GGG 0.558247 4_3:-4634550 Msa0625550:intron
AGTAAATGCGTCAAAGAACC+AGG 0.559462 4_3:-4633401 Msa0625550:CDS
GACGGAACCTTACTTGTAGG+AGG 0.563579 4_3:+4630937 None:intergenic
GCTCAGGGGTTACTCTGTCA+AGG 0.566034 4_3:-4635584 Msa0625550:intron
ACGGTTTGAGCCTAGAAGAC+AGG 0.567499 4_3:-4634177 Msa0625550:intron
GATGCTCTTCTTGTTCGTGA+AGG 0.569216 4_3:-4635706 Msa0625550:CDS
ACTGCCCGCTCAACTATCAC+TGG 0.569404 4_3:-4635077 Msa0625550:CDS
CTCAAAATATGATGGAGGGA+TGG 0.571128 4_3:-4634862 Msa0625550:CDS
TTCTCCAAGACAGAGAGAGC+TGG 0.571260 4_3:+4630993 None:intergenic
GCTGCTCCAAACACCAGGGA+TGG 0.572532 4_3:-4635925 Msa0625550:CDS
GCCTGGAAGGCTCAATACCA+AGG 0.575877 4_3:+4632369 None:intergenic
AGCAAGTTCTTAAAGCCAAG+AGG 0.576792 4_3:-4632343 Msa0625550:CDS
CGTGCTCTAATATTTGATCA+AGG 0.579384 4_3:-4631550 Msa0625550:CDS
AAGAAAATGTAGATATTACA+GGG 0.581726 4_3:-4630170 Msa0625550:three_prime_UTR
TTTGGAGCAGCGGCTATAGG+AGG 0.582108 4_3:+4635937 None:intergenic
CTATTTAGTACGTGGAAGCA+CGG 0.584626 4_3:-4636329 Msa0625550:five_prime_UTR
ATTTGCTTTGTCCGGCAAGT+GGG 0.589515 4_3:+4631028 None:intergenic
GGGTATGTCTTCAATAGAGG+TGG 0.590645 4_3:-4634697 Msa0625550:CDS
GTTACCTCAAAATATGATGG+AGG 0.594354 4_3:-4634867 Msa0625550:CDS
GGTAAGGAAGGCAGATGAAG+AGG 0.596194 4_3:-4635207 Msa0625550:CDS
AATGAAGGCTTTGGTAAGGA+AGG 0.596671 4_3:-4635219 Msa0625550:intron
GGGATGGCAAACTCACACAT+AGG 0.598239 4_3:+4635682 None:intergenic
GAGGTATGTTCTCCAGGCCA+GGG 0.602858 4_3:+4630956 None:intergenic
GCAAGTTCTTAAAGCCAAGA+GGG 0.604143 4_3:-4632342 Msa0625550:intron
GACAACTGACAGGAATCGGA+TGG 0.607102 4_3:+4636254 None:intergenic
AGTAGTGTTGATTTGTGAGG+AGG 0.608720 4_3:+4636011 None:intergenic
GGATACACAATAGTTCGTCC+GGG 0.610507 4_3:-4632179 Msa0625550:CDS
GCAGCAATTGTTGTTGCTGA+AGG 0.611171 4_3:+4636090 None:intergenic
GGGCATCAGTTGTGCTGATG+TGG 0.616066 4_3:-4631319 Msa0625550:CDS
TGGGACTTGGTCGAAGATCG+CGG 0.620126 4_3:-4635813 Msa0625550:CDS
CTCTTCAGGGTTGATCAGCA+AGG 0.623616 4_3:-4635050 Msa0625550:CDS
AGTATTCTGAGCACCAGGGA+TGG 0.632012 4_3:+4635666 None:intergenic
TATGAAAACACCTACAGGCA+AGG 0.632269 4_3:+4633339 None:intergenic
TTACCTCAAAATATGATGGA+GGG 0.640633 4_3:-4634866 Msa0625550:CDS
TCCAAGCCCAGATCTTCTCA+AGG 0.642912 4_3:+4632199 None:intergenic
CTCGACGACGTCAACCCTGT+GGG 0.648664 4_3:-4635832 Msa0625550:CDS
AGGAGGCAGTCGTTGTACAG+AGG 0.649342 4_3:+4635954 None:intergenic
TCTAGAAGCTGGTCCTTCAG+GGG 0.650111 4_3:-4634482 Msa0625550:CDS
ATCTTCGACCAAGTCCCACA+GGG 0.651382 4_3:+4635818 None:intergenic
TGGTGATCCAAACACAGTCA+AGG 0.654891 4_3:-4635138 Msa0625550:CDS
ATGTTACGAGTACGTTGCTG+AGG 0.656759 4_3:-4631161 Msa0625550:CDS
ATAATGAATTGAAAATGCAG+TGG 0.657643 4_3:+4636165 None:intergenic
AACACTCCCTATTTAGTACG+TGG 0.661051 4_3:-4636337 Msa0625550:five_prime_UTR
GATCACCAGTGATAGTTGAG+CGG 0.662278 4_3:+4635072 None:intergenic
GCAGTCGTTGTACAGAGGAG+CGG 0.662658 4_3:+4635959 None:intergenic
TCTCGACGACGTCAACCCTG+TGG 0.668504 4_3:-4635833 Msa0625550:CDS
GCTGACAGGAAGAACCTGGT+GGG 0.669326 4_3:-4631576 Msa0625550:intron
TATACGTACTGATGATGTGG+AGG 0.669817 4_3:-4635734 Msa0625550:CDS
TTGGTATTGAGCCTTCCAGG+CGG 0.672929 4_3:-4632367 Msa0625550:CDS
TGCTGACAGGAAGAACCTGG+TGG 0.676407 4_3:-4631577 Msa0625550:intron
AATTGTTGTTGCTGAAGGTG+AGG 0.678588 4_3:+4636095 None:intergenic
CTGTCAAGAGTACTACCCAA+AGG 0.683886 4_3:+4634643 None:intergenic
GATGGATGGGAAGTTCGTCA+AGG 0.684473 4_3:-4634909 Msa0625550:CDS
ATCGCGGCAGATATTCGATG+AGG 0.685359 4_3:-4635797 Msa0625550:CDS
GTCCGTAAACTCATGCTCAG+GGG 0.688942 4_3:-4635598 Msa0625550:CDS
AGCCGCTGCTCCAAACACCA+GGG 0.697507 4_3:-4635929 Msa0625550:CDS
CAGTAGTATTCTGAGCACCA+GGG 0.701255 4_3:+4635662 None:intergenic
TGTGGCCGATATATGTGTGA+AGG 0.705155 4_3:-4631301 Msa0625550:CDS
AGAAAATGTAGATATTACAG+GGG 0.712636 4_3:-4630169 Msa0625550:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAAATAAAATATA+GGG + chr4_3:4631721-4631740 None:intergenic 0.0%
!! TAAAATTAAAAATAAAATAT+AGG + chr4_3:4631722-4631741 None:intergenic 0.0%
!!! TATATTTTATTTTTAATTTT+AGG - chr4_3:4631721-4631740 Msa0625550:intron 0.0%
!!! ATATTTTATTTTTAATTTTA+GGG - chr4_3:4631722-4631741 Msa0625550:intron 0.0%
!! TATGTATGTATAAAATAAAA+TGG - chr4_3:4631050-4631069 Msa0625550:intron 10.0%
!! ATTTAATAAATTACATTAGA+AGG - chr4_3:4632416-4632435 Msa0625550:intron 10.0%
!!! ATTATTTATCTTTATTGATT+TGG - chr4_3:4633545-4633564 Msa0625550:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr4_3:4634732-4634751 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr4_3:4634733-4634752 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:4632909-4632928 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:4632909-4632928 None:intergenic 100.0%
!! AATATCCAATAACATAATTA+AGG + chr4_3:4631106-4631125 None:intergenic 15.0%
!! ACAAATTTAAGTAAAAGATT+CGG + chr4_3:4632311-4632330 None:intergenic 15.0%
!!! TTTTTATCTTTTATACTATG+AGG + chr4_3:4632568-4632587 None:intergenic 15.0%
!!! AGATAAAAAAATGTTGTTTT+AGG - chr4_3:4632579-4632598 Msa0625550:intron 15.0%
!!! TTTTCTTATAATAAAATGCA+AGG - chr4_3:4633278-4633297 Msa0625550:intron 15.0%
!!! AGTTTTCAATTTAAAATACT+TGG - chr4_3:4633598-4633617 Msa0625550:intron 15.0%
!!! GTTTTCAATTTAAAATACTT+GGG - chr4_3:4633599-4633618 Msa0625550:intron 15.0%
!! TTTAAATACATTCACAAAAT+TGG + chr4_3:4634414-4634433 None:intergenic 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr4_3:4634667-4634686 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr4_3:4634668-4634687 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr4_3:4634731-4634750 None:intergenic 15.0%
!!! TTCAATTTTTCAAAAATCAA+AGG + chr4_3:4635642-4635661 None:intergenic 15.0%
!! ATCAATAAATAAATTGCATT+AGG - chr4_3:4635681-4635700 Msa0625550:CDS 15.0%
!! ACATATATCAAAATATAATG+TGG - chr4_3:4635970-4635989 Msa0625550:CDS 15.0%
!! TTAAGTATTCATTTAAATTG+TGG - chr4_3:4636125-4636144 Msa0625550:five_prime_UTR 15.0%
!!! AATATCTACATTTTCTTTTT+TGG + chr4_3:4636266-4636285 None:intergenic 15.0%
!!! ATAAAATGGTTAATTTTCCT+TGG - chr4_3:4631064-4631083 Msa0625550:intron 20.0%
!! ATTCACCTTAATTATGTTAT+TGG - chr4_3:4631098-4631117 Msa0625550:intron 20.0%
!! AATAATCTTGCAAAAAATGT+TGG + chr4_3:4631674-4631693 None:intergenic 20.0%
!! TTAATGTATGTACAAGAAAA+GGG + chr4_3:4632238-4632257 None:intergenic 20.0%
!! TTGTACATACATTAACAATA+CGG - chr4_3:4632243-4632262 Msa0625550:intron 20.0%
!!! TTAAATTTGTCTTCTGTTTT+TGG - chr4_3:4632321-4632340 Msa0625550:intron 20.0%
!! ACTTGTAAGGAAAAATAAAA+GGG + chr4_3:4632678-4632697 None:intergenic 20.0%
!! TACTTGTAAGGAAAAATAAA+AGG + chr4_3:4632679-4632698 None:intergenic 20.0%
!! TTCTATAATTCTGTTACTAA+TGG + chr4_3:4632733-4632752 None:intergenic 20.0%
!!! AGGTATATTGATTGATATTT+TGG - chr4_3:4633731-4633750 Msa0625550:intron 20.0%
!! TGCATTGGATTAATTATTAA+TGG - chr4_3:4634338-4634357 Msa0625550:intron 20.0%
!! AATTATTAATGGCTTAAGAT+TGG - chr4_3:4634349-4634368 Msa0625550:intron 20.0%
!!! GACACTTTTTTTTAGTAAAT+GGG + chr4_3:4634598-4634617 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr4_3:4634635-4634654 None:intergenic 20.0%
!! AAAGTGGAATATATTGAATT+GGG + chr4_3:4634708-4634727 None:intergenic 20.0%
!! CAATAATCAAAATTGTTTAC+GGG + chr4_3:4635058-4635077 None:intergenic 20.0%
!! CCAATAATCAAAATTGTTTA+CGG + chr4_3:4635059-4635078 None:intergenic 20.0%
!!! ATTTTGATTATTGGAATAAC+TGG - chr4_3:4635065-4635084 Msa0625550:CDS 20.0%
!!! TGAAAATGTTAAGTTTCTTT+TGG + chr4_3:4635245-4635264 None:intergenic 20.0%
!!! ATTTTTCTGTATATATTCAC+AGG - chr4_3:4635570-4635589 Msa0625550:intron 20.0%
!! CAAATTGAATGGAAATAATA+CGG + chr4_3:4636054-4636073 None:intergenic 20.0%
!! AAAGAAAATGTAGATATTAC+AGG - chr4_3:4636268-4636287 Msa0625550:five_prime_UTR 20.0%
!! AAGAAAATGTAGATATTACA+GGG - chr4_3:4636269-4636288 Msa0625550:five_prime_UTR 20.0%
! ATAATGAATTGAAAATGCAG+TGG + chr4_3:4630277-4630296 None:intergenic 25.0%
!! AGATTGATTTAGAAACTAAC+TGG + chr4_3:4630939-4630958 None:intergenic 25.0%
!! AGTTAGTTTCTAAATCAATC+TGG - chr4_3:4630938-4630957 Msa0625550:intron 25.0%
!! GTTAGTTTCTAAATCAATCT+GGG - chr4_3:4630939-4630958 Msa0625550:intron 25.0%
! TTAGTTTCTAAATCAATCTG+GGG - chr4_3:4630940-4630959 Msa0625550:intron 25.0%
!! TTTGATTGGCTAAAAAACAT+GGG + chr4_3:4630986-4631005 None:intergenic 25.0%
! GAATGTGAAATTGCTAAATA+TGG + chr4_3:4631014-4631033 None:intergenic 25.0%
! TCAAATCATTTCTGACAAAT+CGG + chr4_3:4631151-4631170 None:intergenic 25.0%
!! TAATCTATCTAAAGCATTTC+AGG - chr4_3:4631418-4631437 Msa0625550:intron 25.0%
! ATTTAAATCTGAATCTTCAC+TGG - chr4_3:4631508-4631527 Msa0625550:intron 25.0%
!!! GCTTCTAGAATTAATACATA+AGG + chr4_3:4631946-4631965 None:intergenic 25.0%
!! TATGTATTAATTCTAGAAGC+TGG - chr4_3:4631946-4631965 Msa0625550:intron 25.0%
! AAATACAATTTACTCTGACT+TGG + chr4_3:4631985-4632004 None:intergenic 25.0%
!! AAGAATCATTCTCATTTTAG+TGG - chr4_3:4632041-4632060 Msa0625550:intron 25.0%
! GTTAATGTATGTACAAGAAA+AGG + chr4_3:4632239-4632258 None:intergenic 25.0%
! TAAAAGATTCGGAAACAATA+AGG + chr4_3:4632300-4632319 None:intergenic 25.0%
! AAATAGTATTTAATCACCAC+TGG - chr4_3:4632444-4632463 Msa0625550:intron 25.0%
! TTGTAAGGAAAAATAAAAGG+GGG + chr4_3:4632676-4632695 None:intergenic 25.0%
! CTTGTAAGGAAAAATAAAAG+GGG + chr4_3:4632677-4632696 None:intergenic 25.0%
! TAACAAAAGCAAGTAAATAG+GGG + chr4_3:4632881-4632900 None:intergenic 25.0%
! GTAACAAAAGCAAGTAAATA+GGG + chr4_3:4632882-4632901 None:intergenic 25.0%
! TGTAACAAAAGCAAGTAAAT+AGG + chr4_3:4632883-4632902 None:intergenic 25.0%
!!! TTTCGTATGACTTTTTTCTT+TGG - chr4_3:4633500-4633519 Msa0625550:intron 25.0%
! TTAAATTGAAAACTATCAGC+AGG + chr4_3:4633592-4633611 None:intergenic 25.0%
! TTATTGACACTCTTTCATTT+AGG - chr4_3:4633711-4633730 Msa0625550:intron 25.0%
!!! TATTTTGGAGAAAATCATGA+AGG - chr4_3:4633746-4633765 Msa0625550:intron 25.0%
!!! ATTTTGGAGAAAATCATGAA+GGG - chr4_3:4633747-4633766 Msa0625550:intron 25.0%
! ACATGAAACTAAGACAAAAT+CGG + chr4_3:4634045-4634064 None:intergenic 25.0%
!!! ATGTTCCTTTTTGTTATGTT+TGG - chr4_3:4634180-4634199 Msa0625550:CDS 25.0%
! CATTCAAAAACATATTCTAC+CGG + chr4_3:4634318-4634337 None:intergenic 25.0%
!!! ATATGTTTTTGAATGTGCAT+TGG - chr4_3:4634323-4634342 Msa0625550:intron 25.0%
!! TAATATTGAGTGGATTTAGA+GGG + chr4_3:4634488-4634507 None:intergenic 25.0%
! TAAATCCACTCAATATTAGA+GGG - chr4_3:4634490-4634509 Msa0625550:CDS 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG + chr4_3:4634599-4634618 None:intergenic 25.0%
! GAAAGTGGAATATATTGAAT+TGG + chr4_3:4634709-4634728 None:intergenic 25.0%
!!! TTCTTGTTTTTAGGTTTCTT+CGG - chr4_3:4634998-4635017 Msa0625550:CDS 25.0%
!!! CCGTAAACAATTTTGATTAT+TGG - chr4_3:4635056-4635075 Msa0625550:CDS 25.0%
! TGCCAAATGTCATAATTTAT+AGG - chr4_3:4635099-4635118 Msa0625550:CDS 25.0%
! GCCAAATGTCATAATTTATA+GGG - chr4_3:4635100-4635119 Msa0625550:CDS 25.0%
!!! GATTATTTTTGTGTCTAATC+AGG - chr4_3:4635385-4635404 Msa0625550:intron 25.0%
!! AATTTAACTGTGCAGATTTT+AGG + chr4_3:4635599-4635618 None:intergenic 25.0%
!! AGTGTAAAAATACCGAATTT+TGG - chr4_3:4635732-4635751 Msa0625550:CDS 25.0%
!! TGTTTCTCTAAAAATACCTT+TGG - chr4_3:4635757-4635776 Msa0625550:CDS 25.0%
! AGTAGTATACACAAATTGAA+TGG + chr4_3:4636065-4636084 None:intergenic 25.0%
! AGTATTCATTTAAATTGTGG+TGG - chr4_3:4636128-4636147 Msa0625550:five_prime_UTR 25.0%
! AGAAAATGTAGATATTACAG+GGG - chr4_3:4636270-4636289 Msa0625550:five_prime_UTR 25.0%
! GGAATTCATCATATTTTGTG+TGG - chr4_3:4630131-4630150 Msa0625550:three_prime_UTR 30.0%
TGTCAACTTCAAATCTGAAT+TGG + chr4_3:4630214-4630233 None:intergenic 30.0%
AATACAACACTTTCACTTTC+AGG - chr4_3:4630403-4630422 Msa0625550:intron 30.0%
!! AATACTACTGTACTTGTTGT+TGG - chr4_3:4630790-4630809 Msa0625550:intron 30.0%
AACTAACTGGTCATCAATTA+TGG + chr4_3:4630926-4630945 None:intergenic 30.0%
! GTTTGATTGGCTAAAAAACA+TGG + chr4_3:4630987-4631006 None:intergenic 30.0%
! TAAATATGGTGGTGTTTGAT+TGG + chr4_3:4631000-4631019 None:intergenic 30.0%
TGTGAAATTGCTAAATATGG+TGG + chr4_3:4631011-4631030 None:intergenic 30.0%
GACAGTTTCAAAACATAAAC+TGG - chr4_3:4631169-4631188 Msa0625550:intron 30.0%
!! ATCAACTTTTTCTGCAATGA+AGG - chr4_3:4631205-4631224 Msa0625550:intron 30.0%
GTAGTTACCTCAAAATATGA+TGG - chr4_3:4631569-4631588 Msa0625550:CDS 30.0%
! TTACCTCAAAATATGATGGA+GGG - chr4_3:4631573-4631592 Msa0625550:intron 30.0%
ATTCTCAGTGAACTCAAATT+TGG + chr4_3:4631606-4631625 None:intergenic 30.0%
! AAATTTGAGTTCACTGAGAA+TGG - chr4_3:4631605-4631624 Msa0625550:intron 30.0%
AAAAAAGCTTTCTCTACCTT+TGG - chr4_3:4631780-4631799 Msa0625550:intron 30.0%
AAAAAGCTTTCTCTACCTTT+GGG - chr4_3:4631781-4631800 Msa0625550:intron 30.0%
TGCAAGAATTAGTACAAAAG+TGG - chr4_3:4632005-4632024 Msa0625550:intron 30.0%
GCAAGAATTAGTACAAAAGT+GGG - chr4_3:4632006-4632025 Msa0625550:intron 30.0%
! TACAAAAGTGGGATTTTGTA+GGG - chr4_3:4632017-4632036 Msa0625550:intron 30.0%
ATTCGGAAACAATAAGGTAT+TGG + chr4_3:4632294-4632313 None:intergenic 30.0%
AAAGCCAGTTATTGAACTAA+TGG + chr4_3:4632521-4632540 None:intergenic 30.0%
!!! ATGTTGTTTTAGGACATTCA+AGG - chr4_3:4632589-4632608 Msa0625550:intron 30.0%
TAAAAGTTGTTACTAGACAG+AGG + chr4_3:4632631-4632650 None:intergenic 30.0%
TGTAAGGAAAAATAAAAGGG+GGG + chr4_3:4632675-4632694 None:intergenic 30.0%
TTAGAAACCAAGCAATAGTT+AGG - chr4_3:4632836-4632855 Msa0625550:intron 30.0%
AACAAAAGCAAGTAAATAGG+GGG + chr4_3:4632880-4632899 None:intergenic 30.0%
! TCTGAAACAAGAGTGAATAT+AGG + chr4_3:4633008-4633027 None:intergenic 30.0%
! TATATTCACTCTTGTTTCAG+AGG - chr4_3:4633007-4633026 Msa0625550:intron 30.0%
AAATGTATGAAAACACCTAC+AGG + chr4_3:4633108-4633127 None:intergenic 30.0%
ATATGCTTGTCTAATGTTCA+TGG - chr4_3:4633165-4633184 Msa0625550:intron 30.0%
TTTCTATCTTCTTGAAGATG+TGG - chr4_3:4633373-4633392 Msa0625550:CDS 30.0%
GAGTTGAAGTTTATAAGACA+TGG + chr4_3:4633417-4633436 None:intergenic 30.0%
ATGTAACATAACAGCATCAA+AGG + chr4_3:4633457-4633476 None:intergenic 30.0%
! CAATTTAAAATACTTGGGTC+TGG - chr4_3:4633604-4633623 Msa0625550:intron 30.0%
GTGTCAATAAGTGATTATTG+CGG + chr4_3:4633701-4633720 None:intergenic 30.0%
GAAAAGAAGAATGCATAACT+AGG - chr4_3:4633917-4633936 Msa0625550:intron 30.0%
CAATAGAATATACATCTTCC+AGG + chr4_3:4633945-4633964 None:intergenic 30.0%
TCACATGCAAAACTTACATT+AGG + chr4_3:4633998-4634017 None:intergenic 30.0%
TTTGTCTTAGTTTCATGTTC+TGG - chr4_3:4634047-4634066 Msa0625550:intron 30.0%
! CTAATATTGAGTGGATTTAG+AGG + chr4_3:4634489-4634508 None:intergenic 30.0%
CTAAATCCACTCAATATTAG+AGG - chr4_3:4634489-4634508 Msa0625550:CDS 30.0%
AAATCCACTCAATATTAGAG+GGG - chr4_3:4634491-4634510 Msa0625550:CDS 30.0%
! AGTATTTGGTTTAGGGTATA+TGG + chr4_3:4634553-4634572 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr4_3:4634724-4634743 None:intergenic 30.0%
!!! CATACACGTTTCTTGTTTTT+AGG - chr4_3:4634989-4635008 Msa0625550:CDS 30.0%
GCCCTATAAATTATGACATT+TGG + chr4_3:4635104-4635123 None:intergenic 30.0%
! TAACATTTTCAACCTTGTCT+AGG - chr4_3:4635254-4635273 Msa0625550:intron 30.0%
TGAATGCAGATTAGATCAAA+AGG + chr4_3:4635357-4635376 None:intergenic 30.0%
! TTTTGATCTAATCTGCATTC+AGG - chr4_3:4635356-4635375 Msa0625550:intron 30.0%
TTTGATCTAATCTGCATTCA+GGG - chr4_3:4635357-4635376 Msa0625550:intron 30.0%
AGATAGTTATTTGCTTTGTC+CGG + chr4_3:4635422-4635441 None:intergenic 30.0%
TAGAAGTAGAAGCAATTTGA+CGG + chr4_3:4635523-4635542 None:intergenic 30.0%
TAGAGAAACAAGCCAAAATT+CGG + chr4_3:4635747-4635766 None:intergenic 30.0%
TTGATATATGTATCATCCCT+TGG + chr4_3:4635961-4635980 None:intergenic 30.0%
!! TTGAACATTGACTCATTTAC+AGG - chr4_3:4636164-4636183 Msa0625550:five_prime_UTR 30.0%
! TCATCATATTTTGTGTGGCT+TGG - chr4_3:4630136-4630155 Msa0625550:three_prime_UTR 35.0%
!! GAAAGTAGTGTTGATTTGTG+AGG + chr4_3:4630434-4630453 None:intergenic 35.0%
! ATCAATCTGGGGTACAAAAA+AGG - chr4_3:4630951-4630970 Msa0625550:three_prime_UTR 35.0%
GTGAATTGTCTTCTAAACCA+AGG + chr4_3:4631084-4631103 None:intergenic 35.0%
! TTTTTCTGCAATGAAGGCTT+TGG - chr4_3:4631211-4631230 Msa0625550:intron 35.0%
TCAGGATCACAACAATCAAT+TGG - chr4_3:4631436-4631455 Msa0625550:intron 35.0%
AAATCTGAATCTTCACTGGA+TGG - chr4_3:4631512-4631531 Msa0625550:intron 35.0%
GTTACCTCAAAATATGATGG+AGG - chr4_3:4631572-4631591 Msa0625550:intron 35.0%
AGGGGTAAAATCAGAATTTC+AGG + chr4_3:4631702-4631721 None:intergenic 35.0%
TTAGGGTATGTCTTCAATAG+AGG - chr4_3:4631739-4631758 Msa0625550:intron 35.0%
ATGAGTTCATCTGTCATGAT+AGG - chr4_3:4631881-4631900 Msa0625550:intron 35.0%
ATCTGTCATGATAGGTATGA+GGG - chr4_3:4631889-4631908 Msa0625550:intron 35.0%
! GTACAAAAGTGGGATTTTGT+AGG - chr4_3:4632016-4632035 Msa0625550:intron 35.0%
!! TTCTCATTTTAGTGGCTCTA+TGG - chr4_3:4632049-4632068 Msa0625550:intron 35.0%
! ACAAGAAAAGGGTCTAAAAC+TGG + chr4_3:4632227-4632246 None:intergenic 35.0%
CTTTCCGAACCTTTGTAATA+GGG - chr4_3:4632542-4632561 Msa0625550:intron 35.0%
GACTCTAAGTGATACTTGTA+AGG + chr4_3:4632691-4632710 None:intergenic 35.0%
! TCTGTTACTAATGGACGTAA+TGG + chr4_3:4632724-4632743 None:intergenic 35.0%
AAGTAAAACAGGTTTGTGGT+GGG + chr4_3:4632793-4632812 None:intergenic 35.0%
TAAGTAAAACAGGTTTGTGG+TGG + chr4_3:4632794-4632813 None:intergenic 35.0%
! ACCACAAACCTGTTTTACTT+AGG - chr4_3:4632793-4632812 Msa0625550:intron 35.0%
TCCTAAGTAAAACAGGTTTG+TGG + chr4_3:4632797-4632816 None:intergenic 35.0%
AGAATGGTCCTAAGTAAAAC+AGG + chr4_3:4632804-4632823 None:intergenic 35.0%
CTTATTGCCTAACTATTGCT+TGG + chr4_3:4632846-4632865 None:intergenic 35.0%
ACAAAAGCAAGTAAATAGGG+GGG + chr4_3:4632879-4632898 None:intergenic 35.0%
GAGAAGCTTTCAGCTAATAT+TGG - chr4_3:4633065-4633084 Msa0625550:intron 35.0%
TATATAAAAGCCTTGCCTGT+AGG - chr4_3:4633090-4633109 Msa0625550:intron 35.0%
AAATGTTCAGAGCGATGATA+AGG - chr4_3:4633235-4633254 Msa0625550:intron 35.0%
AAAATGCAAGGATACCAACA+AGG - chr4_3:4633290-4633309 Msa0625550:intron 35.0%
! GGACAAGCTTTTAGTAAAAC+TGG - chr4_3:4633671-4633690 Msa0625550:intron 35.0%
TCAGATTACTAGAATCAAGC+AGG + chr4_3:4633892-4633911 None:intergenic 35.0%
GGTGACCAAACATAACAAAA+AGG + chr4_3:4634188-4634207 None:intergenic 35.0%
AAGATTCCTTGAGAAGATCT+GGG - chr4_3:4634234-4634253 Msa0625550:CDS 35.0%
AAAAGAAACTGTACCTGCAA+TGG + chr4_3:4634287-4634306 None:intergenic 35.0%
GATTTAGAGGGAAAGAAGAT+GGG + chr4_3:4634447-4634466 None:intergenic 35.0%
GATTTAGAGGGAAAGAAGAT+GGG + chr4_3:4634447-4634466 None:intergenic 35.0%
! TTTGGTTTAGGGTATATGGA+GGG + chr4_3:4634549-4634568 None:intergenic 35.0%
! ATTTGGTTTAGGGTATATGG+AGG + chr4_3:4634550-4634569 None:intergenic 35.0%
AGTAAATGGGTCAGATATTC+CGG + chr4_3:4634585-4634604 None:intergenic 35.0%
!! TGAAATGGCTCAGCTATTTT+GGG + chr4_3:4634620-4634639 None:intergenic 35.0%
! TTGAAATGGCTCAGCTATTT+TGG + chr4_3:4634621-4634640 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr4_3:4634753-4634772 Msa0625550:intron 35.0%
CGTGCTCTAATATTTGATCA+AGG - chr4_3:4634889-4634908 Msa0625550:CDS 35.0%
ATCAAGGAGACAGAATATCT+CGG - chr4_3:4634905-4634924 Msa0625550:CDS 35.0%
TCTATTCTTTACTGTCACTG+AGG - chr4_3:4634938-4634957 Msa0625550:CDS 35.0%
TGTATGATAGCAAATGTTGG+GGG + chr4_3:4634975-4634994 None:intergenic 35.0%
GTGTATGATAGCAAATGTTG+GGG + chr4_3:4634976-4634995 None:intergenic 35.0%
CGTGTATGATAGCAAATGTT+GGG + chr4_3:4634977-4634996 None:intergenic 35.0%
ACGTGTATGATAGCAAATGT+TGG + chr4_3:4634978-4634997 None:intergenic 35.0%
TGTTTCTTGCAGTTGAATCA+TGG + chr4_3:4635168-4635187 None:intergenic 35.0%
TTTGATGTGAGTAAACTGCT+TGG - chr4_3:4635193-4635212 Msa0625550:CDS 35.0%
TTCTACATAGCTGCATCAAA+TGG - chr4_3:4635538-4635557 Msa0625550:intron 35.0%
TTTCTTCCAGTTGTTGAAGT+AGG - chr4_3:4635860-4635879 Msa0625550:CDS 35.0%
ATGTTTCCTACTTCAACAAC+TGG + chr4_3:4635869-4635888 None:intergenic 35.0%
TTGACTACGTCAATCTCTTT+AGG - chr4_3:4635888-4635907 Msa0625550:CDS 35.0%
!! TCAATCTCTTTAGGACTGAT+CGG - chr4_3:4635897-4635916 Msa0625550:CDS 35.0%
GTGCAGTCAATAATACTCTA+TGG - chr4_3:4635927-4635946 Msa0625550:CDS 35.0%
ATATGTATCATCCCTTGGTT+GGG + chr4_3:4635956-4635975 None:intergenic 35.0%
TATATGTATCATCCCTTGGT+TGG + chr4_3:4635957-4635976 None:intergenic 35.0%
TAAGAGGGATAAATGGATCA+TGG + chr4_3:4635996-4636015 None:intergenic 35.0%
TTGTGTATACTACTGTCACT+TGG - chr4_3:4636071-4636090 Msa0625550:CDS 35.0%
! CTCATTTACAGGTCTTTTCA+AGG - chr4_3:4636175-4636194 Msa0625550:five_prime_UTR 35.0%
!! TTTACAGGTCTTTTCAAGGA+TGG - chr4_3:4636179-4636198 Msa0625550:five_prime_UTR 35.0%
AGATATTACAGGGGACTAAT+TGG - chr4_3:4636279-4636298 Msa0625550:five_prime_UTR 35.0%
AACACTCCCTATTTAGTACG+TGG - chr4_3:4630102-4630121 Msa0625550:three_prime_UTR 40.0%
GTGCTTCCACGTACTAAATA+GGG + chr4_3:4630111-4630130 None:intergenic 40.0%
CTATTTAGTACGTGGAAGCA+CGG - chr4_3:4630110-4630129 Msa0625550:three_prime_UTR 40.0%
! AATTGTTGTTGCTGAAGGTG+AGG + chr4_3:4630347-4630366 None:intergenic 40.0%
!! AGTAGTGTTGATTTGTGAGG+AGG + chr4_3:4630431-4630450 None:intergenic 40.0%
GAGGTTTGGAGAAAATTCTC+TGG - chr4_3:4630661-4630680 Msa0625550:intron 40.0%
TTGGAGAAAATTCTCTGGAC+TGG - chr4_3:4630666-4630685 Msa0625550:intron 40.0%
TGGAGAAAATTCTCTGGACT+GGG - chr4_3:4630667-4630686 Msa0625550:intron 40.0%
! GACTATACGTACTGATGATG+TGG - chr4_3:4630702-4630721 Msa0625550:intron 40.0%
! TATACGTACTGATGATGTGG+AGG - chr4_3:4630705-4630724 Msa0625550:intron 40.0%
GGACAACAATTCGACCTATA+CGG + chr4_3:4630825-4630844 None:intergenic 40.0%
TTGGCTAAAAAACATGGGAC+TGG + chr4_3:4630981-4631000 None:intergenic 40.0%
! AATGAAGGCTTTGGTAAGGA+AGG - chr4_3:4631220-4631239 Msa0625550:intron 40.0%
ATCACTATCTCTACTGACCT+TGG + chr4_3:4631272-4631291 None:intergenic 40.0%
AGGTCAGTAGAGATAGTGAT+TGG - chr4_3:4631272-4631291 Msa0625550:CDS 40.0%
GGTCAGTAGAGATAGTGATT+GGG - chr4_3:4631273-4631292 Msa0625550:CDS 40.0%
GTCAGTAGAGATAGTGATTG+GGG - chr4_3:4631274-4631293 Msa0625550:CDS 40.0%
TATCACTGGTGATCTCTTCA+GGG - chr4_3:4631376-4631395 Msa0625550:intron 40.0%
TGAATCTTCACTGGATGGAT+GGG - chr4_3:4631517-4631536 Msa0625550:intron 40.0%
! CATCCCTCCATCATATTTTG+AGG + chr4_3:4631579-4631598 None:intergenic 40.0%
! CTCAAAATATGATGGAGGGA+TGG - chr4_3:4631577-4631596 Msa0625550:intron 40.0%
!!! CTGCTGTTTTCTCAGGTATA+TGG - chr4_3:4631630-4631649 Msa0625550:intron 40.0%
! GTTTTCTCAGGTATATGGAG+AGG - chr4_3:4631635-4631654 Msa0625550:intron 40.0%
CATCTGTCATGATAGGTATG+AGG - chr4_3:4631888-4631907 Msa0625550:intron 40.0%
CCTGTCATGGTAATACAGAT+AGG + chr4_3:4632160-4632179 None:intergenic 40.0%
CCTATCTGTATTACCATGAC+AGG - chr4_3:4632157-4632176 Msa0625550:intron 40.0%
!! GCCATTTTCATCATTTCGTC+CGG - chr4_3:4632187-4632206 Msa0625550:CDS 40.0%
ACCGGACGAAATGATGAAAA+TGG + chr4_3:4632191-4632210 None:intergenic 40.0%
TTGGACATTACCTGTCTTCT+AGG + chr4_3:4632275-4632294 None:intergenic 40.0%
TCAGAGACAAGACAAATGCA+AGG + chr4_3:4632348-4632367 None:intergenic 40.0%
TCGAGGTTCAAATGTTCAAC+CGG + chr4_3:4632488-4632507 None:intergenic 40.0%
GGCTCCATTAGTTCAATAAC+TGG - chr4_3:4632514-4632533 Msa0625550:intron 40.0%
GCTTTCCGAACCTTTGTAAT+AGG - chr4_3:4632541-4632560 Msa0625550:intron 40.0%
ACTATGAGGCCCTATTACAA+AGG + chr4_3:4632554-4632573 None:intergenic 40.0%
GAAAAATAAAAGGGGGGAAG+GGG + chr4_3:4632669-4632688 None:intergenic 40.0%
GGAAAAATAAAAGGGGGGAA+GGG + chr4_3:4632670-4632689 None:intergenic 40.0%
AGGAAAAATAAAAGGGGGGA+AGG + chr4_3:4632671-4632690 None:intergenic 40.0%
! AAGAATAGACGGGGTTAGTA+AGG + chr4_3:4632770-4632789 None:intergenic 40.0%
! TTTGTGGTGGGAAGAATAGA+CGG + chr4_3:4632781-4632800 None:intergenic 40.0%
CTATTGCTTGGTTTCTAAGC+AGG + chr4_3:4632834-4632853 None:intergenic 40.0%
AGTCTGCGCAGAAAAAAAGA+GGG + chr4_3:4632933-4632952 None:intergenic 40.0%
AAGTCTGCGCAGAAAAAAAG+AGG + chr4_3:4632934-4632953 None:intergenic 40.0%
AGTAAATGCGTCAAAGAACC+AGG - chr4_3:4633038-4633057 Msa0625550:intron 40.0%
TATGAAAACACCTACAGGCA+AGG + chr4_3:4633103-4633122 None:intergenic 40.0%
CAACAAGGCAACTATAGTGT+GGG - chr4_3:4633305-4633324 Msa0625550:intron 40.0%
TTGTCCAATTGCTGACAACT+TGG - chr4_3:4633650-4633669 Msa0625550:intron 40.0%
TTGTCCAAGTTGTCAGCAAT+TGG + chr4_3:4633657-4633676 None:intergenic 40.0%
TTAGTTTCATGTTCTGGCCT+TGG - chr4_3:4634053-4634072 Msa0625550:intron 40.0%
AGCAAGTTCTTAAAGCCAAG+AGG - chr4_3:4634096-4634115 Msa0625550:intron 40.0%
GCAAGTTCTTAAAGCCAAGA+GGG - chr4_3:4634097-4634116 Msa0625550:intron 40.0%
AACAAATGAACCTACCCTCT+TGG + chr4_3:4634114-4634133 None:intergenic 40.0%
GAAGATTCCTTGAGAAGATC+TGG - chr4_3:4634233-4634252 Msa0625550:CDS 40.0%
TGGATACACAATAGTTCGTC+CGG - chr4_3:4634259-4634278 Msa0625550:CDS 40.0%
! CAGTTTCTTTTGTAGTGTGC+CGG - chr4_3:4634296-4634315 Msa0625550:intron 40.0%
GGATTTAGAGGGAAAGAAGA+TGG + chr4_3:4634448-4634467 None:intergenic 40.0%
GGATTTAGAGGGAAAGAAGA+TGG + chr4_3:4634448-4634467 None:intergenic 40.0%
! TTGGTTTAGGGTATATGGAG+GGG + chr4_3:4634548-4634567 None:intergenic 40.0%
GTAAATGGGTCAGATATTCC+GGG + chr4_3:4634584-4634603 None:intergenic 40.0%
! GACTTGAATGTTTTGCTGAC+AGG - chr4_3:4634849-4634868 Msa0625550:CDS 40.0%
TCAAGGAGACAGAATATCTC+GGG - chr4_3:4634906-4634925 Msa0625550:CDS 40.0%
TAGCAAATGTTGGGGGAAAT+AGG + chr4_3:4634968-4634987 None:intergenic 40.0%
GAGTGCCTTCACACATATAT+CGG + chr4_3:4635146-4635165 None:intergenic 40.0%
ACTCGTAACATACCTAGACA+AGG + chr4_3:4635269-4635288 None:intergenic 40.0%
GAACATACCTCCTACAAGTA+AGG - chr4_3:4635495-4635514 Msa0625550:intron 40.0%
TTTGACGGAACCTTACTTGT+AGG + chr4_3:4635508-4635527 None:intergenic 40.0%
GATCCATTTATCCCTCTTAG+AGG - chr4_3:4635997-4636016 Msa0625550:CDS 40.0%
CGTGCTTCCACGTACTAAAT+AGG + chr4_3:4630112-4630131 None:intergenic 45.0%
GACTGACAACTGACAGGAAT+CGG + chr4_3:4630192-4630211 None:intergenic 45.0%
GAATTGGACTGACAACTGAC+AGG + chr4_3:4630198-4630217 None:intergenic 45.0%
GTTGACACAAGTCCTCCAAT+TGG - chr4_3:4630227-4630246 Msa0625550:three_prime_UTR 45.0%
! GCAGCAATTGTTGTTGCTGA+AGG + chr4_3:4630352-4630371 None:intergenic 45.0%
!!! GCTGCTTTTTGGTGTATGAG+AGG + chr4_3:4630456-4630475 None:intergenic 45.0%
!! GTTGTTGTCGTCGTCGTTTT+GGG + chr4_3:4630560-4630579 None:intergenic 45.0%
GGCAGATATTCGATGAGGTT+TGG - chr4_3:4630647-4630666 Msa0625550:intron 45.0%
GATGCTCTTCTTGTTCGTGA+AGG - chr4_3:4630733-4630752 Msa0625550:intron 45.0%
CAGTAGTATTCTGAGCACCA+GGG + chr4_3:4630780-4630799 None:intergenic 45.0%
ACAGTAGTATTCTGAGCACC+AGG + chr4_3:4630781-4630800 None:intergenic 45.0%
TTGTCCGTAAACTCATGCTC+AGG - chr4_3:4630839-4630858 Msa0625550:intron 45.0%
TGTCCGTAAACTCATGCTCA+GGG - chr4_3:4630840-4630859 Msa0625550:intron 45.0%
AACCCCTGAGCATGAGTTTA+CGG + chr4_3:4630846-4630865 None:intergenic 45.0%
! CTGCAATGAAGGCTTTGGTA+AGG - chr4_3:4631216-4631235 Msa0625550:intron 45.0%
GAGATAGTGATTGGGGATGT+TGG - chr4_3:4631281-4631300 Msa0625550:CDS 45.0%
TGGTGATCCAAACACAGTCA+AGG - chr4_3:4631301-4631320 Msa0625550:CDS 45.0%
ATCACCAGTGATAGTTGAGC+GGG + chr4_3:4631369-4631388 None:intergenic 45.0%
GATCACCAGTGATAGTTGAG+CGG + chr4_3:4631370-4631389 None:intergenic 45.0%
CTATCACTGGTGATCTCTTC+AGG - chr4_3:4631375-4631394 Msa0625550:intron 45.0%
CTGAATCTTCACTGGATGGA+TGG - chr4_3:4631516-4631535 Msa0625550:intron 45.0%
!!! AATGGAGCTGCTGTTTTCTC+AGG - chr4_3:4631623-4631642 Msa0625550:intron 45.0%
GGGTATGTCTTCAATAGAGG+TGG - chr4_3:4631742-4631761 Msa0625550:intron 45.0%
!! CTGTCAAGAGTACTACCCAA+AGG + chr4_3:4631799-4631818 None:intergenic 45.0%
CTTTGGGTAGTACTCTTGAC+AGG - chr4_3:4631797-4631816 Msa0625550:intron 45.0%
TCATGATAGGTATGAGGGCT+TGG - chr4_3:4631894-4631913 Msa0625550:intron 45.0%
! ATTCTAGAAGCTGGTCCTTC+AGG - chr4_3:4631955-4631974 Msa0625550:intron 45.0%
! TTCTAGAAGCTGGTCCTTCA+GGG - chr4_3:4631956-4631975 Msa0625550:intron 45.0%
AATGGCACTCTAACCTGTCA+TGG + chr4_3:4632173-4632192 None:intergenic 45.0%
! ACTGGATGATCTGGTTTCAC+CGG + chr4_3:4632209-4632228 None:intergenic 45.0%
! GGGTCTAAAACTGGATGATC+TGG + chr4_3:4632218-4632237 None:intergenic 45.0%
TTCAACTGCGATCTTACCAG+TGG + chr4_3:4632463-4632482 None:intergenic 45.0%
GTAAGATCGCAGTTGAACTC+CGG - chr4_3:4632466-4632485 Msa0625550:intron 45.0%
GGTTGAACATTTGAACCTCG+AGG - chr4_3:4632487-4632506 Msa0625550:intron 45.0%
GAGGCCCTATTACAAAGGTT+CGG + chr4_3:4632549-4632568 None:intergenic 45.0%
TGTTACTAGACAGAGGAGCA+AGG + chr4_3:4632624-4632643 None:intergenic 45.0%
TATCACTTAGAGTCCTCCAG+TGG - chr4_3:4632697-4632716 Msa0625550:intron 45.0%
! TAATGGACGTAATGGTCCAC+TGG + chr4_3:4632716-4632735 None:intergenic 45.0%
! TTGTGGTGGGAAGAATAGAC+GGG + chr4_3:4632780-4632799 None:intergenic 45.0%
CTAAGCAGGAGCAGTTAGAA+TGG + chr4_3:4632820-4632839 None:intergenic 45.0%
TCTGCGCAGAAAAAAAGAGG+GGG + chr4_3:4632931-4632950 None:intergenic 45.0%
GTCTGCGCAGAAAAAAAGAG+GGG + chr4_3:4632932-4632951 None:intergenic 45.0%
CCACACTATAGTTGCCTTGT+TGG + chr4_3:4633307-4633326 None:intergenic 45.0%
CCAACAAGGCAACTATAGTG+TGG - chr4_3:4633304-4633323 Msa0625550:intron 45.0%
AGAATGCATAACTAGGCACC+TGG - chr4_3:4633924-4633943 Msa0625550:intron 45.0%
GTTCTTAAAGCCAAGAGGGT+AGG - chr4_3:4634101-4634120 Msa0625550:intron 45.0%
ACCTTAATCCCGAATTCTCC+AGG - chr4_3:4634205-4634224 Msa0625550:CDS 45.0%
GGATACACAATAGTTCGTCC+GGG - chr4_3:4634260-4634279 Msa0625550:CDS 45.0%
! GATGGGTGAGTGGATTTAGA+GGG + chr4_3:4634459-4634478 None:intergenic 45.0%
! AGATGGGTGAGTGGATTTAG+AGG + chr4_3:4634460-4634479 None:intergenic 45.0%
TGCTCCCCTCTAATATTGAG+TGG + chr4_3:4634498-4634517 None:intergenic 45.0%
! TTTAGGGTATATGGAGGGGA+AGG + chr4_3:4634544-4634563 None:intergenic 45.0%
!! CGGAGGGAGTATTTGGTTTA+GGG + chr4_3:4634560-4634579 None:intergenic 45.0%
!! ACGGAGGGAGTATTTGGTTT+AGG + chr4_3:4634561-4634580 None:intergenic 45.0%
! CCAAACTGGCTCAGATATAC+CGG - chr4_3:4634767-4634786 Msa0625550:intron 45.0%
! CAAACTGGCTCAGATATACC+GGG - chr4_3:4634768-4634787 Msa0625550:intron 45.0%
! TTTTGCTGACAGGAAGAACC+TGG - chr4_3:4634859-4634878 Msa0625550:CDS 45.0%
TGTGGCCGATATATGTGTGA+AGG - chr4_3:4635138-4635157 Msa0625550:CDS 45.0%
ATGTTACGAGTACGTTGCTG+AGG - chr4_3:4635278-4635297 Msa0625550:intron 45.0%
! TGGGAATGAGCTTTATGAGC+TGG - chr4_3:4635302-4635321 Msa0625550:intron 45.0%
ATTTGCTTTGTCCGGCAAGT+GGG + chr4_3:4635414-4635433 None:intergenic 45.0%
TATTTGCTTTGTCCGGCAAG+TGG + chr4_3:4635415-4635434 None:intergenic 45.0%
GAAGAATACCTGAACATCCC+TGG - chr4_3:4635466-4635485 Msa0625550:intron 45.0%
! TTGTAGGAGGTATGTTCTCC+AGG + chr4_3:4635492-4635511 None:intergenic 45.0%
!! ATACCTTTGGAGTTGCATGC+TGG - chr4_3:4635770-4635789 Msa0625550:CDS 45.0%
ATTCCAGCATGCAACTCCAA+AGG + chr4_3:4635776-4635795 None:intergenic 45.0%
TGGAATCACTCTTCTTGAGC+CGG - chr4_3:4635790-4635809 Msa0625550:CDS 45.0%
! CCACCTCTAAGAGGGATAAA+TGG + chr4_3:4636003-4636022 None:intergenic 45.0%
CCATTTATCCCTCTTAGAGG+TGG - chr4_3:4636000-4636019 Msa0625550:CDS 45.0%
! TAGACAGACCACCTCTAAGA+GGG + chr4_3:4636011-4636030 None:intergenic 45.0%
ATAGACAGACCACCTCTAAG+AGG + chr4_3:4636012-4636031 None:intergenic 45.0%
!! AAATTAAAAATAAAATATAG+GGG + chr4_3:4631720-4631739 None:intergenic 5.0%
GACAACTGACAGGAATCGGA+TGG + chr4_3:4630188-4630207 None:intergenic 50.0%
GATCGCTCGCAATTGCCAAT+TGG + chr4_3:4630245-4630264 None:intergenic 50.0%
TCTTTGCCATCCCTGGTGTT+TGG + chr4_3:4630523-4630542 None:intergenic 50.0%
! CGTTGTTGTCGTCGTCGTTT+TGG + chr4_3:4630561-4630580 None:intergenic 50.0%
ATCTTCGACCAAGTCCCACA+GGG + chr4_3:4630624-4630643 None:intergenic 50.0%
ATCGCGGCAGATATTCGATG+AGG - chr4_3:4630642-4630661 Msa0625550:intron 50.0%
GGGATGGCAAACTCACACAT+AGG + chr4_3:4630760-4630779 None:intergenic 50.0%
ATGTGTGAGTTTGCCATCCC+TGG - chr4_3:4630760-4630779 Msa0625550:intron 50.0%
AGTATTCTGAGCACCAGGGA+TGG + chr4_3:4630776-4630795 None:intergenic 50.0%
!! GTTGGTGCTACTAGCCGTAT+AGG - chr4_3:4630808-4630827 Msa0625550:intron 50.0%
GTCCGTAAACTCATGCTCAG+GGG - chr4_3:4630841-4630860 Msa0625550:intron 50.0%
GGTAAGGAAGGCAGATGAAG+AGG - chr4_3:4631232-4631251 Msa0625550:intron 50.0%
AAGGAAGGCAGATGAAGAGG+TGG - chr4_3:4631235-4631254 Msa0625550:intron 50.0%
ACAGCAGCCTTGACTGTGTT+TGG + chr4_3:4631311-4631330 None:intergenic 50.0%
ACAGTCAAGGCTGCTGTAGA+AGG - chr4_3:4631314-4631333 Msa0625550:CDS 50.0%
! CTCTTCAGGGTTGATCAGCA+AGG - chr4_3:4631389-4631408 Msa0625550:intron 50.0%
GATGGATGGGAAGTTCGTCA+AGG - chr4_3:4631530-4631549 Msa0625550:intron 50.0%
TCTAGAAGCTGGTCCTTCAG+GGG - chr4_3:4631957-4631976 Msa0625550:intron 50.0%
ACGGTTTGAGCCTAGAAGAC+AGG - chr4_3:4632262-4632281 Msa0625550:intron 50.0%
ACATTTGAACCTCGAGGCAG+TGG - chr4_3:4632493-4632512 Msa0625550:intron 50.0%
GACAGAGGAGCAAGGAATCA+GGG + chr4_3:4632616-4632635 None:intergenic 50.0%
AGACAGAGGAGCAAGGAATC+AGG + chr4_3:4632617-4632636 None:intergenic 50.0%
! TGTGGTGGGAAGAATAGACG+GGG + chr4_3:4632779-4632798 None:intergenic 50.0%
TGCGCAGAAAAAAAGAGGGG+GGG + chr4_3:4632929-4632948 None:intergenic 50.0%
CTGCGCAGAAAAAAAGAGGG+GGG + chr4_3:4632930-4632949 None:intergenic 50.0%
GCTGAAAGCTTCTCGAATCC+TGG + chr4_3:4633059-4633078 None:intergenic 50.0%
CATGTGAATATGCCGCAGAC+TGG - chr4_3:4634011-4634030 Msa0625550:intron 50.0%
TCGGTTTCTTGTCCAGTCTG+CGG + chr4_3:4634026-4634045 None:intergenic 50.0%
! TTTAAGAACTTGCTCCCGCC+TGG + chr4_3:4634090-4634109 None:intergenic 50.0%
GCCTGGAGAATTCGGGATTA+AGG + chr4_3:4634209-4634228 None:intergenic 50.0%
TAATCCCGAATTCTCCAGGC+AGG - chr4_3:4634209-4634228 Msa0625550:CDS 50.0%
TTCACCTGCCTGGAGAATTC+GGG + chr4_3:4634216-4634235 None:intergenic 50.0%
CTTCACCTGCCTGGAGAATT+CGG + chr4_3:4634217-4634236 None:intergenic 50.0%
TCAAGGAATCTTCACCTGCC+TGG + chr4_3:4634226-4634245 None:intergenic 50.0%
TCCTTGAGAAGATCTGGGCT+TGG - chr4_3:4634239-4634258 Msa0625550:CDS 50.0%
TCCAAGCCCAGATCTTCTCA+AGG + chr4_3:4634243-4634262 None:intergenic 50.0%
AACTGTACCTGCAATGGACC+CGG + chr4_3:4634281-4634300 None:intergenic 50.0%
AGGGAAAGAAGATGGGTGAG+TGG + chr4_3:4634469-4634488 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr4_3:4634580-4634599 None:intergenic 50.0%
CCGGTATATCTGAGCCAGTT+TGG + chr4_3:4634770-4634789 None:intergenic 50.0%
TACGAGTACGTTGCTGAGGA+TGG - chr4_3:4635282-4635301 Msa0625550:intron 50.0%
ACGAGTACGTTGCTGAGGAT+GGG - chr4_3:4635283-4635302 Msa0625550:intron 50.0%
! TAATCAGGTTGCCCACTTGC+CGG - chr4_3:4635400-4635419 Msa0625550:intron 50.0%
TTCTCCAAGACAGAGAGAGC+TGG + chr4_3:4635449-4635468 None:intergenic 50.0%
GACGGAACCTTACTTGTAGG+AGG + chr4_3:4635505-4635524 None:intergenic 50.0%
ATCACTCTTCTTGAGCCGGA+AGG - chr4_3:4635794-4635813 Msa0625550:CDS 50.0%
TCTTCTTGAGCCGGAAGGAT+AGG - chr4_3:4635799-4635818 Msa0625550:CDS 50.0%
CTTCTTGAGCCGGAAGGATA+GGG - chr4_3:4635800-4635819 Msa0625550:CDS 50.0%
TTCTTGAGCCGGAAGGATAG+GGG - chr4_3:4635801-4635820 Msa0625550:CDS 50.0%
TCTACCATCCCCTATCCTTC+CGG + chr4_3:4635812-4635831 None:intergenic 50.0%
ACTCTATGGAGACCCAACCA+AGG - chr4_3:4635941-4635960 Msa0625550:CDS 50.0%
CTCTATGGAGACCCAACCAA+GGG - chr4_3:4635942-4635961 Msa0625550:CDS 50.0%
CGCTCGCAATTGCCAATTGG+AGG + chr4_3:4630242-4630261 None:intergenic 55.0%
!!! GGAGCGGGTATGCTGCTTTT+TGG + chr4_3:4630467-4630486 None:intergenic 55.0%
CAGTCGTTGTACAGAGGAGC+GGG + chr4_3:4630482-4630501 None:intergenic 55.0%
GCAGTCGTTGTACAGAGGAG+CGG + chr4_3:4630483-4630502 None:intergenic 55.0%
AGGAGGCAGTCGTTGTACAG+AGG + chr4_3:4630488-4630507 None:intergenic 55.0%
! TTTGGAGCAGCGGCTATAGG+AGG + chr4_3:4630505-4630524 None:intergenic 55.0%
! GTGTTTGGAGCAGCGGCTAT+AGG + chr4_3:4630508-4630527 None:intergenic 55.0%
! ATCCCTGGTGTTTGGAGCAG+CGG + chr4_3:4630515-4630534 None:intergenic 55.0%
! CTTGCTGTCTTTGCCATCCC+TGG + chr4_3:4630530-4630549 None:intergenic 55.0%
GATCTTCGACCAAGTCCCAC+AGG + chr4_3:4630625-4630644 None:intergenic 55.0%
! TGGGACTTGGTCGAAGATCG+CGG - chr4_3:4630626-4630645 Msa0625550:intron 55.0%
! CTGGACTGGGTCAGATCTCT+AGG - chr4_3:4630680-4630699 Msa0625550:intron 55.0%
GCTCAGGGGTTACTCTGTCA+AGG - chr4_3:4630855-4630874 Msa0625550:intron 55.0%
AGGTGGTAGAGCTGCTTCCA+AGG - chr4_3:4631252-4631271 Msa0625550:intron 55.0%
AGTGATAGTTGAGCGGGCAG+TGG + chr4_3:4631363-4631382 None:intergenic 55.0%
ACTGCCCGCTCAACTATCAC+TGG - chr4_3:4631362-4631381 Msa0625550:intron 55.0%
! AATTGGCTCAGTTGCGCGCT+GGG - chr4_3:4631453-4631472 Msa0625550:intron 55.0%
! GAGGGCTTGGTTCTCTCTGT+TGG - chr4_3:4631907-4631926 Msa0625550:intron 55.0%
! GGCTTGGTTCTCTCTGTTGG+CGG - chr4_3:4631910-4631929 Msa0625550:intron 55.0%
GTTCTCTCTGTTGGCGGCAA+TGG - chr4_3:4631916-4631935 Msa0625550:intron 55.0%
!! CTCTGACTTGGATCCCCTGA+AGG + chr4_3:4631973-4631992 None:intergenic 55.0%
!! GGGGGGAAGGGGTATTATGT+AGG + chr4_3:4632658-4632677 None:intergenic 55.0%
TGGACGTAATGGTCCACTGG+AGG + chr4_3:4632713-4632732 None:intergenic 55.0%
AGAAAAAAAGAGGGGGGGGG+GGG + chr4_3:4632924-4632943 None:intergenic 55.0%
CAGAAAAAAAGAGGGGGGGG+GGG + chr4_3:4632925-4632944 None:intergenic 55.0%
GCAGAAAAAAAGAGGGGGGG+GGG + chr4_3:4632926-4632945 None:intergenic 55.0%
CGCAGAAAAAAAGAGGGGGG+GGG + chr4_3:4632927-4632946 None:intergenic 55.0%
GCGCAGAAAAAAAGAGGGGG+GGG + chr4_3:4632928-4632947 None:intergenic 55.0%
GGGTATATGGAGGGGAAGGA+AGG + chr4_3:4634540-4634559 None:intergenic 55.0%
ACCAAATACTCCCTCCGTCC+CGG - chr4_3:4634563-4634582 Msa0625550:intron 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr4_3:4634576-4634595 None:intergenic 55.0%
CTGGCTCAGATATACCGGGA+CGG - chr4_3:4634772-4634791 Msa0625550:intron 55.0%
CTCAGATATACCGGGACGGA+GGG - chr4_3:4634776-4634795 Msa0625550:intron 55.0%
ACATAGTACTCCCTCCGTCC+CGG + chr4_3:4634789-4634808 None:intergenic 55.0%
TGCTGACAGGAAGAACCTGG+TGG - chr4_3:4634862-4634881 Msa0625550:CDS 55.0%
GCTGACAGGAAGAACCTGGT+GGG - chr4_3:4634863-4634882 Msa0625550:CDS 55.0%
! GGGCATCAGTTGTGCTGATG+TGG - chr4_3:4635120-4635139 Msa0625550:CDS 55.0%
GACACCAGCTCTCTCTGTCT+TGG - chr4_3:4635442-4635461 Msa0625550:intron 55.0%
ATACCTGAACATCCCTGGCC+TGG - chr4_3:4635471-4635490 Msa0625550:intron 55.0%
GAGGTATGTTCTCCAGGCCA+GGG + chr4_3:4635486-4635505 None:intergenic 55.0%
TAGCCGCTGCTCCAAACACC+AGG - chr4_3:4630509-4630528 Msa0625550:intron 60.0%
AGCCGCTGCTCCAAACACCA+GGG - chr4_3:4630510-4630529 Msa0625550:intron 60.0%
GCTGCTCCAAACACCAGGGA+TGG - chr4_3:4630514-4630533 Msa0625550:intron 60.0%
TCTCGACGACGTCAACCCTG+TGG - chr4_3:4630606-4630625 Msa0625550:intron 60.0%
CTCGACGACGTCAACCCTGT+GGG - chr4_3:4630607-4630626 Msa0625550:intron 60.0%
GACGTCAACCCTGTGGGACT+TGG - chr4_3:4630613-4630632 Msa0625550:intron 60.0%
! CAATTGGCTCAGTTGCGCGC+TGG - chr4_3:4631452-4631471 Msa0625550:intron 60.0%
CTAATGGAGCCACTGCCTCG+AGG + chr4_3:4632505-4632524 None:intergenic 60.0%
AAAAAAAGAGGGGGGGGGGG+GGG + chr4_3:4632922-4632941 None:intergenic 60.0%
GAAAAAAAGAGGGGGGGGGG+GGG + chr4_3:4632923-4632942 None:intergenic 60.0%
! AGAACTTGCTCCCGCCTGGA+AGG + chr4_3:4634086-4634105 None:intergenic 60.0%
AGTTCGTCCGGGTCCATTGC+AGG - chr4_3:4634271-4634290 Msa0625550:intron 60.0%
!! TCCGGGACGGAGGGAGTATT+TGG + chr4_3:4634567-4634586 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr4_3:4634577-4634596 None:intergenic 60.0%
GCTCAGATATACCGGGACGG+AGG - chr4_3:4634775-4634794 Msa0625550:intron 60.0%
ATTAGAGCACGCTGCCCACC+AGG + chr4_3:4634880-4634899 None:intergenic 60.0%
TCTCCAGGCCAGGGATGTTC+AGG + chr4_3:4635477-4635496 None:intergenic 60.0%
! GGAGGTATGTTCTCCAGGCC+AGG + chr4_3:4635487-4635506 None:intergenic 60.0%
TGAGCCGGAAGGATAGGGGA+TGG - chr4_3:4635805-4635824 Msa0625550:CDS 60.0%
AAAAAAGAGGGGGGGGGGGG+GGG + chr4_3:4632921-4632940 None:intergenic 65.0%
AAAAAGAGGGGGGGGGGGGG+GGG + chr4_3:4632920-4632939 None:intergenic 70.0%
AAAAGAGGGGGGGGGGGGGG+GGG + chr4_3:4632919-4632938 None:intergenic 75.0%
! AAAGAGGGGGGGGGGGGGGG+GGG + chr4_3:4632918-4632937 None:intergenic 80.0%
! AAGAGGGGGGGGGGGGGGGG+GGG + chr4_3:4632917-4632936 None:intergenic 85.0%
! AGAGGGGGGGGGGGGGGGGG+GGG + chr4_3:4632916-4632935 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:4632914-4632933 None:intergenic 95.0%
! GAGGGGGGGGGGGGGGGGGG+GGG + chr4_3:4632915-4632934 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 4630077 4636384 4630077 ID=Msa0625550;Name=Msa0625550
chr4_3 mRNA 4630077 4636384 4630077 ID=Msa0625550-mRNA-1;Parent=Msa0625550;Name=Msa0625550-mRNA-1;_AED=0.10;_eAED=0.10;_QI=260|1|1|1|0.91|0.84|13|232|588
chr4_3 exon 4630077 4630275 4630077 ID=Msa0625550-mRNA-1:exon:1295;Parent=Msa0625550-mRNA-1
chr4_3 exon 4630950 4631054 4630950 ID=Msa0625550-mRNA-1:exon:1294;Parent=Msa0625550-mRNA-1
chr4_3 exon 4631138 4631185 4631138 ID=Msa0625550-mRNA-1:exon:1293;Parent=Msa0625550-mRNA-1
chr4_3 exon 4631263 4631340 4631263 ID=Msa0625550-mRNA-1:exon:1292;Parent=Msa0625550-mRNA-1
chr4_3 exon 4631534 4631590 4631534 ID=Msa0625550-mRNA-1:exon:1291;Parent=Msa0625550-mRNA-1
chr4_3 exon 4632169 4632234 4632169 ID=Msa0625550-mRNA-1:exon:1290;Parent=Msa0625550-mRNA-1
chr4_3 exon 4632343 4632432 4632343 ID=Msa0625550-mRNA-1:exon:1289;Parent=Msa0625550-mRNA-1
chr4_3 exon 4633354 4633434 4633354 ID=Msa0625550-mRNA-1:exon:1288;Parent=Msa0625550-mRNA-1
chr4_3 exon 4634178 4634282 4634178 ID=Msa0625550-mRNA-1:exon:1287;Parent=Msa0625550-mRNA-1
chr4_3 exon 4634423 4634558 4634423 ID=Msa0625550-mRNA-1:exon:1286;Parent=Msa0625550-mRNA-1
chr4_3 exon 4634643 4634718 4634643 ID=Msa0625550-mRNA-1:exon:1285;Parent=Msa0625550-mRNA-1
chr4_3 exon 4634817 4635234 4634817 ID=Msa0625550-mRNA-1:exon:1284;Parent=Msa0625550-mRNA-1
chr4_3 exon 4635585 4636384 4635585 ID=Msa0625550-mRNA-1:exon:1283;Parent=Msa0625550-mRNA-1
chr4_3 five_prime_UTR 4636125 4636384 4636125 ID=Msa0625550-mRNA-1:five_prime_utr;Parent=Msa0625550-mRNA-1
chr4_3 CDS 4635585 4636124 4635585 ID=Msa0625550-mRNA-1:cds;Parent=Msa0625550-mRNA-1
chr4_3 CDS 4634817 4635234 4634817 ID=Msa0625550-mRNA-1:cds;Parent=Msa0625550-mRNA-1
chr4_3 CDS 4634643 4634718 4634643 ID=Msa0625550-mRNA-1:cds;Parent=Msa0625550-mRNA-1
chr4_3 CDS 4634423 4634558 4634423 ID=Msa0625550-mRNA-1:cds;Parent=Msa0625550-mRNA-1
chr4_3 CDS 4634178 4634282 4634178 ID=Msa0625550-mRNA-1:cds;Parent=Msa0625550-mRNA-1
chr4_3 CDS 4633354 4633434 4633354 ID=Msa0625550-mRNA-1:cds;Parent=Msa0625550-mRNA-1
chr4_3 CDS 4632343 4632432 4632343 ID=Msa0625550-mRNA-1:cds;Parent=Msa0625550-mRNA-1
chr4_3 CDS 4632169 4632234 4632169 ID=Msa0625550-mRNA-1:cds;Parent=Msa0625550-mRNA-1
chr4_3 CDS 4631534 4631590 4631534 ID=Msa0625550-mRNA-1:cds;Parent=Msa0625550-mRNA-1
chr4_3 CDS 4631263 4631340 4631263 ID=Msa0625550-mRNA-1:cds;Parent=Msa0625550-mRNA-1
chr4_3 CDS 4631138 4631185 4631138 ID=Msa0625550-mRNA-1:cds;Parent=Msa0625550-mRNA-1
chr4_3 CDS 4630983 4631054 4630983 ID=Msa0625550-mRNA-1:cds;Parent=Msa0625550-mRNA-1
chr4_3 three_prime_UTR 4630950 4630982 4630950 ID=Msa0625550-mRNA-1:three_prime_utr;Parent=Msa0625550-mRNA-1
chr4_3 three_prime_UTR 4630077 4630275 4630077 ID=Msa0625550-mRNA-1:three_prime_utr;Parent=Msa0625550-mRNA-1
Gene Sequence

>Msa0625550

ATGAGTACCTCACCTTCAGCAACAACAATTGCTGCTGCTGCTGTGTACTCAAAGTATCATAATATTAATACAACACTTTCACTTTCAGGAGCCTCCTCACAAATCAACACTACTTTCCTCTCATACACCAAAAAGCAGCATACCCGCTCCTCTGTACAACGACTGCCTCCTATAGCCGCTGCTCCAAACACCAGGGATGGCAAAGACAGCAAGAACAACACCCAAAACGACGACGACAACAACGATGACAAACAATCTGTTTCTCTTAGTCTCGACGACGTCAACCCTGTGGGACTTGGTCGAAGATCGCGGCAGATATTCGATGAGGTTTGGAGAAAATTCTCTGGACTGGGTCAGATCTCTAGGACTATACGTACTGATGATGTGGAGGCACTAGATGCTCTTCTTGTTCGTGAAGGTCCTATGTGTGAGTTTGCCATCCCTGGTGCTCAGAATACTACTGTACTTGTTGTTGGTGCTACTAGCCGTATAGGTCGAATTGTTGTCCGTAAACTCATGCTCAGGGGTTACTCTGTCAAGGCTTTGGTAAGGAAGGCAGATGAAGAGGTGGTAGAGCTGCTTCCAAGGTCAGTAGAGATAGTGATTGGGGATGTTGGTGATCCAAACACAGTCAAGGCTGCTGTAGAAGGCTGCAATAAAATCATATATTGTGCCACTGCCCGCTCAACTATCACTGGTGATCTCTTCAGGGTTGATCAGCAAGGAGTTTATAATCTATCTAAAGCATTTCAGGATCACAACAATCAATTGGCTCAGTTGCGCGCTGGGAAAAGCAGCAAAAGTAAGCTTACAATTGCTAAATTTAAATCTGAATCTTCACTGGATGGATGGGAAGTTCGTCAAGGAACTTACTTCGAAGATGTAGTTACCTCAAAATATGATGGAGGGATGGATGCCAAATTTGAGTTCACTGAGAATGGAGCTGCTGTTTTCTCAGGGTATGTCTTCAATAGAGGTGGCTATGTAGAACTGTCAAAAAAGCTTTCTCTACCTTTGGGTAGTACTCTTGACAGGTATGAGGGCTTGGTTCTCTCTGTTGGCGGCAATGGAAGACCTTATGTATTAATTCTAGAAGCTGGTCCTTCAGGGGATCCAAGTCAGAGTAAATTGTATTTTGCAAGAATTAGTACAAAAGTGGGATTTTGTAGGGTTAGAGTGCCATTTTCATCATTTCGTCCGGTGAAACCAGATCATCCAGTTTTAGACCCTTTTCTTGTACATACATTAACAATACGGTTTGAGCCTAGAAGACAGAGGTCTGATATAGTAAATGCGTCAAAGAACCAGGATTCGAGAAGCTTTCAGCTAATATTGGAATATATAAAAGCCTTGCCTACTGGACAAGAAACCGATTTTGTCTTAGTTTCATGTTCTGGCCTTGGTATTGAGCCTTCCAGGCGGGAGCAAGTTCTTAAAGCCAAGAGGGCAGGTGAAGATTCCTTGAGAAGATCTGGGCTTGGATACACAATAGTTCGTCCGGGTCCATTGCAGGAAGAACCTGGTGGGCAGCGTGCTCTAATATTTGATCAAGGAGACAGAATATCTCGGGGCATCAGTTGTGCTGATGTGGCCGATATATGTGTGAAGGCACTCCATGATTCAACTGCAAGAAACAAAAGCTTTGATGTATGTTACGAGTACGTTGCTGAGGATGGGAATGAGCTTTATGAGCTGGTTGCCCACTTGCCGGACAAAGCAAATAACTATCTGACACCAGCTCTCTCTGTCTTGGAGAAGAATACCTGA

Protein sequence

>Msa0625550

MSTSPSATTIAAAAVYSKYHNINTTLSLSGASSQINTTFLSYTKKQHTRSSVQRLPPIAAAPNTRDGKDSKNNTQNDDDNNDDKQSVSLSLDDVNPVGLGRRSRQIFDEVWRKFSGLGQISRTIRTDDVEALDALLVREGPMCEFAIPGAQNTTVLVVGATSRIGRIVVRKLMLRGYSVKALVRKADEEVVELLPRSVEIVIGDVGDPNTVKAAVEGCNKIIYCATARSTITGDLFRVDQQGVYNLSKAFQDHNNQLAQLRAGKSSKSKLTIAKFKSESSLDGWEVRQGTYFEDVVTSKYDGGMDAKFEFTENGAAVFSGYVFNRGGYVELSKKLSLPLGSTLDRYEGLVLSVGGNGRPYVLILEAGPSGDPSQSKLYFARISTKVGFCRVRVPFSSFRPVKPDHPVLDPFLVHTLTIRFEPRRQRSDIVNASKNQDSRSFQLILEYIKALPTGQETDFVLVSCSGLGIEPSRREQVLKAKRAGEDSLRRSGLGYTIVRPGPLQEEPGGQRALIFDQGDRISRGISCADVADICVKALHDSTARNKSFDVCYEYVAEDGNELYELVAHLPDKANNYLTPALSVLEKNT*