AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0049670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049670 MtrunA17_Chr4g0000041 97.470 593 6 4 1 588 1 589 0.0 1169
Msa0049670 MtrunA17_Chr8g0379501 51.351 74 35 1 477 550 81 153 7.08e-14 70.9
Msa0049670 MtrunA17_Chr8g0379511 28.028 289 170 13 155 416 126 403 1.96e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049670 AT1G16720.1 83.034 501 85 0 88 588 98 598 0.0 872
Msa0049670 AT1G16720.2 77.903 534 85 1 88 588 98 631 0.0 855
Msa0049670 AT1G16720.3 82.289 463 82 0 88 550 98 560 0.0 798
Msa0049670 AT4G18810.1 29.694 458 255 23 139 550 113 549 2.62e-25 110
Msa0049670 AT4G18810.2 29.694 458 255 23 139 550 113 549 2.76e-25 110

Find 177 sgRNAs with CRISPR-Local

Find 478 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACAACACTTTCACTTTC+AGG 0.166841 1_2:-3080370 Msa0049670:CDS
CGTTGTTGTCGTCGTCGTTT+TGG 0.174964 1_2:+3080215 None:intergenic
TAATCTATCTAAAGCATTTC+AGG 0.177804 1_2:-3079350 Msa0049670:CDS
ATTCTCAGTGAACTCAAATT+TGG 0.188350 1_2:+3079165 None:intergenic
CGTGCTTCCACGTACTAAAT+AGG 0.210340 1_2:+3080664 None:intergenic
TTTGTCTTAGTTTCATGTTC+TGG 0.244048 1_2:-3076717 Msa0049670:CDS
TTGGACATTACCTGTCTTCT+AGG 0.270556 1_2:+3078496 None:intergenic
CTATCACTGGTGATCTCTTC+AGG 0.274699 1_2:-3079393 Msa0049670:CDS
GAGAAGCTTTCAGCTAATAT+TGG 0.279017 1_2:-3077699 Msa0049670:CDS
ATTCTAGAAGCTGGTCCTTC+AGG 0.280246 1_2:-3078813 Msa0049670:CDS
GCCTTGGTATTGAGCCTTCC+AGG 0.286621 1_2:-3076695 Msa0049670:CDS
ACAGCAGCCTTGACTGTGTT+TGG 0.292381 1_2:+3079460 None:intergenic
TGTCAACTTCAAATCTGAAT+TGG 0.300935 1_2:+3080562 None:intergenic
ACCGGACGAAATGATGAAAA+TGG 0.315241 1_2:+3078580 None:intergenic
AGATATTACAGGGGACTAAT+TGG 0.315769 1_2:-3074485 Msa0049670:three_prime_UTR
TCTTTGCCATCCCTGGTGTT+TGG 0.318685 1_2:+3080253 None:intergenic
AAAGAAAATGTAGATATTAC+AGG 0.331116 1_2:-3074496 Msa0049670:three_prime_UTR
AACCCCTGAGCATGAGTTTA+CGG 0.337945 1_2:+3079930 None:intergenic
TTAGTTTCATGTTCTGGCCT+TGG 0.337954 1_2:-3076711 Msa0049670:CDS
GAAGATTCCTTGAGAAGATC+TGG 0.343993 1_2:-3076531 Msa0049670:CDS
CTTGCTGTCTTTGCCATCCC+TGG 0.353209 1_2:+3080246 None:intergenic
TCTCCAGGCCAGGGATGTTC+AGG 0.370394 1_2:+3075290 None:intergenic
TGCAAGAATTAGTACAAAAG+TGG 0.371055 1_2:-3078763 Msa0049670:CDS
GTTCTCTCTGTTGGCGGCAA+TGG 0.376433 1_2:-3078852 Msa0049670:CDS
AGTTCGTCCGGGTCCATTGC+AGG 0.386123 1_2:-3076493 Msa0049670:intron
GTTAATGTATGTACAAGAAA+AGG 0.389677 1_2:+3078532 None:intergenic
AAATTTGAGTTCACTGAGAA+TGG 0.390202 1_2:-3079163 Msa0049670:CDS
TAATCAGGTTGCCCACTTGC+CGG 0.392057 1_2:-3075364 Msa0049670:intron
ACAAGAAAAGGGTCTAAAAC+TGG 0.404655 1_2:+3078544 None:intergenic
GGACAACAATTCGACCTATA+CGG 0.404869 1_2:+3079951 None:intergenic
TTCTAGAAGCTGGTCCTTCA+GGG 0.411008 1_2:-3078812 Msa0049670:CDS
GGGTCTAAAACTGGATGATC+TGG 0.417511 1_2:+3078553 None:intergenic
TCATGATAGGTATGAGGGCT+TGG 0.424833 1_2:-3078874 Msa0049670:intron
AATACTACTGTACTTGTTGT+TGG 0.426072 1_2:-3079983 Msa0049670:CDS
CTGAATCTTCACTGGATGGA+TGG 0.426462 1_2:-3079252 Msa0049670:CDS
TTGGAGAAAATTCTCTGGAC+TGG 0.426876 1_2:-3080107 Msa0049670:CDS
CTGGACTGGGTCAGATCTCT+AGG 0.427807 1_2:-3080093 Msa0049670:CDS
GACTGACAACTGACAGGAAT+CGG 0.427951 1_2:+3080584 None:intergenic
GTTGGTGCTACTAGCCGTAT+AGG 0.435219 1_2:-3079965 Msa0049670:CDS
TGTTTCTTGCAGTTGAATCA+TGG 0.435790 1_2:+3075599 None:intergenic
GAGTGCCTTCACACATATAT+CGG 0.436679 1_2:+3075621 None:intergenic
TGGATACACAATAGTTCGTC+CGG 0.437257 1_2:-3076505 Msa0049670:CDS
AGATAGTTATTTGCTTTGTC+CGG 0.438211 1_2:+3075345 None:intergenic
ATTTAAATCTGAATCTTCAC+TGG 0.438895 1_2:-3079260 Msa0049670:CDS
TTAGGGTATGTCTTCAATAG+AGG 0.440898 1_2:-3079029 Msa0049670:intron
TTGTCCGTAAACTCATGCTC+AGG 0.442258 1_2:-3079934 Msa0049670:CDS
GGCAGATATTCGATGAGGTT+TGG 0.442586 1_2:-3080126 Msa0049670:CDS
TCAGGATCACAACAATCAAT+TGG 0.444558 1_2:-3079332 Msa0049670:CDS
GTGCTTCCACGTACTAAATA+GGG 0.444643 1_2:+3080665 None:intergenic
GCTGAAAGCTTCTCGAATCC+TGG 0.446728 1_2:+3077708 None:intergenic
GAGATAGTGATTGGGGATGT+TGG 0.447831 1_2:-3079487 Msa0049670:CDS
AACAAATGAACCTACCCTCT+TGG 0.448430 1_2:+3076653 None:intergenic
AATTGGCTCAGTTGCGCGCT+GGG 0.448540 1_2:-3079315 Msa0049670:CDS
GTGTTTGGAGCAGCGGCTAT+AGG 0.454033 1_2:+3080268 None:intergenic
ACAGTCAAGGCTGCTGTAGA+AGG 0.459186 1_2:-3079454 Msa0049670:CDS
GAGGTTTGGAGAAAATTCTC+TGG 0.460565 1_2:-3080112 Msa0049670:CDS
TCCTTGAGAAGATCTGGGCT+TGG 0.460859 1_2:-3076525 Msa0049670:CDS
ATGTGTGAGTTTGCCATCCC+TGG 0.462288 1_2:-3080013 Msa0049670:CDS
AGGTCAGTAGAGATAGTGAT+TGG 0.469344 1_2:-3079496 Msa0049670:CDS
TTGTACATACATTAACAATA+CGG 0.470364 1_2:-3078525 Msa0049670:CDS
TTGTAGGAGGTATGTTCTCC+AGG 0.472948 1_2:+3075275 None:intergenic
AAATACAATTTACTCTGACT+TGG 0.474303 1_2:+3078786 None:intergenic
GGAGGTATGTTCTCCAGGCC+AGG 0.475726 1_2:+3075280 None:intergenic
TTTAAGAACTTGCTCCCGCC+TGG 0.479129 1_2:+3076677 None:intergenic
CATCTGTCATGATAGGTATG+AGG 0.480362 1_2:-3078880 Msa0049670:intron
GACGTCAACCCTGTGGGACT+TGG 0.481549 1_2:-3080160 Msa0049670:CDS
GACACCAGCTCTCTCTGTCT+TGG 0.482972 1_2:-3075322 Msa0049670:CDS
ACATGAAACTAAGACAAAAT+CGG 0.484449 1_2:+3076722 None:intergenic
TATGTATTAATTCTAGAAGC+TGG 0.484676 1_2:-3078822 Msa0049670:CDS
ATTAGAGCACGCTGCCCACC+AGG 0.489698 1_2:+3075887 None:intergenic
TGGAGAAAATTCTCTGGACT+GGG 0.490104 1_2:-3080106 Msa0049670:CDS
CAATTGGCTCAGTTGCGCGC+TGG 0.490703 1_2:-3079316 Msa0049670:CDS
ATCCCTGGTGTTTGGAGCAG+CGG 0.491895 1_2:+3080261 None:intergenic
TACGAGTACGTTGCTGAGGA+TGG 0.493701 1_2:-3075482 Msa0049670:CDS
GAGGGCTTGGTTCTCTCTGT+TGG 0.494157 1_2:-3078861 Msa0049670:CDS
ATACCTGAACATCCCTGGCC+TGG 0.496705 1_2:-3075293 Msa0049670:exon
TGAATCTTCACTGGATGGAT+GGG 0.497784 1_2:-3079251 Msa0049670:CDS
GGTCAGTAGAGATAGTGATT+GGG 0.500030 1_2:-3079495 Msa0049670:CDS
GCAAGAATTAGTACAAAAGT+GGG 0.501200 1_2:-3078762 Msa0049670:CDS
TTAATGTATGTACAAGAAAA+GGG 0.503140 1_2:+3078533 None:intergenic
GATCGCTCGCAATTGCCAAT+TGG 0.504803 1_2:+3080531 None:intergenic
TGGTATTGAGCCTTCCAGGC+GGG 0.505603 1_2:-3076691 Msa0049670:CDS
ATCACCAGTGATAGTTGAGC+GGG 0.506989 1_2:+3079402 None:intergenic
TAGCCGCTGCTCCAAACACC+AGG 0.507877 1_2:-3080264 Msa0049670:CDS
CGCTCGCAATTGCCAATTGG+AGG 0.507964 1_2:+3080534 None:intergenic
AAATCATAGTAATTACACTT+TGG 0.508911 1_2:-3074402 Msa0049670:three_prime_UTR
ATCACTATCTCTACTGACCT+TGG 0.510201 1_2:+3079499 None:intergenic
GCTTCTAGAATTAATACATA+AGG 0.513253 1_2:+3078825 None:intergenic
CTGCAATGAAGGCTTTGGTA+AGG 0.516682 1_2:-3079552 Msa0049670:intron
CTTTGGGTAGTACTCTTGAC+AGG 0.517774 1_2:-3078971 Msa0049670:intron
TATCACTGGTGATCTCTTCA+GGG 0.525143 1_2:-3079392 Msa0049670:CDS
CAGTCGTTGTACAGAGGAGC+GGG 0.528087 1_2:+3080294 None:intergenic
AAGATTCCTTGAGAAGATCT+GGG 0.529508 1_2:-3076530 Msa0049670:CDS
GATCTTCGACCAAGTCCCAC+AGG 0.531721 1_2:+3080151 None:intergenic
GTAGTTACCTCAAAATATGA+TGG 0.532512 1_2:-3079199 Msa0049670:CDS
AAAAGAAACTGTACCTGCAA+TGG 0.533749 1_2:+3076480 None:intergenic
AACTGTACCTGCAATGGACC+CGG 0.533940 1_2:+3076486 None:intergenic
ATCAAGGAGACAGAATATCT+CGG 0.538498 1_2:-3075859 Msa0049670:CDS
GTTGACACAAGTCCTCCAAT+TGG 0.538762 1_2:-3080546 Msa0049670:five_prime_UTR
ACTGGATGATCTGGTTTCAC+CGG 0.539360 1_2:+3078562 None:intergenic
TGTCCGTAAACTCATGCTCA+GGG 0.540648 1_2:-3079933 Msa0049670:CDS
ACAGTAGTATTCTGAGCACC+AGG 0.541242 1_2:+3079995 None:intergenic
CTCTGACTTGGATCCCCTGA+AGG 0.545090 1_2:+3078798 None:intergenic
GAATTGGACTGACAACTGAC+AGG 0.546532 1_2:+3080578 None:intergenic
AAGGAAGGCAGATGAAGAGG+TGG 0.546607 1_2:-3079533 Msa0049670:CDS
GTCAGTAGAGATAGTGATTG+GGG 0.546856 1_2:-3079494 Msa0049670:CDS
GAAAGTAGTGTTGATTTGTG+AGG 0.548084 1_2:+3080342 None:intergenic
TATTTGCTTTGTCCGGCAAG+TGG 0.553339 1_2:+3075352 None:intergenic
TGGGAATGAGCTTTATGAGC+TGG 0.553677 1_2:-3075462 Msa0049670:intron
AGTGATAGTTGAGCGGGCAG+TGG 0.554082 1_2:+3079408 None:intergenic
GGCTTGGTTCTCTCTGTTGG+CGG 0.554436 1_2:-3078858 Msa0049670:CDS
AGGTGGTAGAGCTGCTTCCA+AGG 0.555546 1_2:-3079516 Msa0049670:CDS
GACTATACGTACTGATGATG+TGG 0.555620 1_2:-3080071 Msa0049670:CDS
AAATCTGAATCTTCACTGGA+TGG 0.556032 1_2:-3079256 Msa0049670:CDS
ACGAGTACGTTGCTGAGGAT+GGG 0.556225 1_2:-3075481 Msa0049670:CDS
AGAACTTGCTCCCGCCTGGA+AGG 0.556592 1_2:+3076681 None:intergenic
TCAAGGAGACAGAATATCTC+GGG 0.556593 1_2:-3075858 Msa0049670:intron
GAAGAATACCTGAACATCCC+TGG 0.556642 1_2:-3075298 Msa0049670:exon
ATCTGTCATGATAGGTATGA+GGG 0.558247 1_2:-3078879 Msa0049670:intron
AGTAAATGCGTCAAAGAACC+AGG 0.559462 1_2:-3077726 Msa0049670:CDS
GACGGAACCTTACTTGTAGG+AGG 0.563579 1_2:+3075262 None:intergenic
GCTCAGGGGTTACTCTGTCA+AGG 0.566034 1_2:-3079918 Msa0049670:intron
ACGGTTTGAGCCTAGAAGAC+AGG 0.567499 1_2:-3078506 Msa0049670:intron
GATGCTCTTCTTGTTCGTGA+AGG 0.569216 1_2:-3080040 Msa0049670:CDS
ACTGCCCGCTCAACTATCAC+TGG 0.569404 1_2:-3079406 Msa0049670:CDS
CTCAAAATATGATGGAGGGA+TGG 0.571128 1_2:-3079191 Msa0049670:CDS
TTCTCCAAGACAGAGAGAGC+TGG 0.571260 1_2:+3075318 None:intergenic
GCTGCTCCAAACACCAGGGA+TGG 0.572532 1_2:-3080259 Msa0049670:CDS
GCCTGGAAGGCTCAATACCA+AGG 0.575877 1_2:+3076694 None:intergenic
AGCAAGTTCTTAAAGCCAAG+AGG 0.576792 1_2:-3076668 Msa0049670:CDS
CGTGCTCTAATATTTGATCA+AGG 0.579384 1_2:-3075875 Msa0049670:CDS
AAGAAAATGTAGATATTACA+GGG 0.581726 1_2:-3074495 Msa0049670:three_prime_UTR
TTTGGAGCAGCGGCTATAGG+AGG 0.582108 1_2:+3080271 None:intergenic
CTATTTAGTACGTGGAAGCA+CGG 0.584626 1_2:-3080663 Msa0049670:five_prime_UTR
ATTTGCTTTGTCCGGCAAGT+GGG 0.589515 1_2:+3075353 None:intergenic
GGGTATGTCTTCAATAGAGG+TGG 0.590645 1_2:-3079026 Msa0049670:CDS
GTTACCTCAAAATATGATGG+AGG 0.594354 1_2:-3079196 Msa0049670:CDS
GGTAAGGAAGGCAGATGAAG+AGG 0.596194 1_2:-3079536 Msa0049670:CDS
AATGAAGGCTTTGGTAAGGA+AGG 0.596671 1_2:-3079548 Msa0049670:intron
GGGATGGCAAACTCACACAT+AGG 0.598239 1_2:+3080016 None:intergenic
GAGGTATGTTCTCCAGGCCA+GGG 0.602858 1_2:+3075281 None:intergenic
GCAAGTTCTTAAAGCCAAGA+GGG 0.604143 1_2:-3076667 Msa0049670:intron
GACAACTGACAGGAATCGGA+TGG 0.607102 1_2:+3080588 None:intergenic
AGTAGTGTTGATTTGTGAGG+AGG 0.608720 1_2:+3080345 None:intergenic
GGATACACAATAGTTCGTCC+GGG 0.610507 1_2:-3076504 Msa0049670:CDS
GCAGCAATTGTTGTTGCTGA+AGG 0.611171 1_2:+3080424 None:intergenic
GGGCATCAGTTGTGCTGATG+TGG 0.616066 1_2:-3075644 Msa0049670:CDS
TGGGACTTGGTCGAAGATCG+CGG 0.620126 1_2:-3080147 Msa0049670:CDS
CTCTTCAGGGTTGATCAGCA+AGG 0.623616 1_2:-3079379 Msa0049670:CDS
AGTATTCTGAGCACCAGGGA+TGG 0.632012 1_2:+3080000 None:intergenic
TATGAAAACACCTACAGGCA+AGG 0.632269 1_2:+3077664 None:intergenic
TTACCTCAAAATATGATGGA+GGG 0.640633 1_2:-3079195 Msa0049670:CDS
TCCAAGCCCAGATCTTCTCA+AGG 0.642912 1_2:+3076524 None:intergenic
CTCGACGACGTCAACCCTGT+GGG 0.648664 1_2:-3080166 Msa0049670:CDS
AGGAGGCAGTCGTTGTACAG+AGG 0.649342 1_2:+3080288 None:intergenic
TCTAGAAGCTGGTCCTTCAG+GGG 0.650111 1_2:-3078811 Msa0049670:CDS
ATCTTCGACCAAGTCCCACA+GGG 0.651382 1_2:+3080152 None:intergenic
TGGTGATCCAAACACAGTCA+AGG 0.654891 1_2:-3079467 Msa0049670:CDS
ATGTTACGAGTACGTTGCTG+AGG 0.656759 1_2:-3075486 Msa0049670:CDS
ATAATGAATTGAAAATGCAG+TGG 0.657643 1_2:+3080499 None:intergenic
AACACTCCCTATTTAGTACG+TGG 0.661051 1_2:-3080671 Msa0049670:five_prime_UTR
GATCACCAGTGATAGTTGAG+CGG 0.662278 1_2:+3079401 None:intergenic
GCAGTCGTTGTACAGAGGAG+CGG 0.662658 1_2:+3080293 None:intergenic
TCTCGACGACGTCAACCCTG+TGG 0.668504 1_2:-3080167 Msa0049670:CDS
GCTGACAGGAAGAACCTGGT+GGG 0.669326 1_2:-3075901 Msa0049670:intron
TATACGTACTGATGATGTGG+AGG 0.669817 1_2:-3080068 Msa0049670:CDS
TTGGTATTGAGCCTTCCAGG+CGG 0.672929 1_2:-3076692 Msa0049670:CDS
TGCTGACAGGAAGAACCTGG+TGG 0.676407 1_2:-3075902 Msa0049670:intron
AATTGTTGTTGCTGAAGGTG+AGG 0.678588 1_2:+3080429 None:intergenic
CTGTCAAGAGTACTACCCAA+AGG 0.683886 1_2:+3078972 None:intergenic
GATGGATGGGAAGTTCGTCA+AGG 0.684473 1_2:-3079238 Msa0049670:CDS
ATCGCGGCAGATATTCGATG+AGG 0.685359 1_2:-3080131 Msa0049670:CDS
GTCCGTAAACTCATGCTCAG+GGG 0.688942 1_2:-3079932 Msa0049670:CDS
AGCCGCTGCTCCAAACACCA+GGG 0.697507 1_2:-3080263 Msa0049670:CDS
CAGTAGTATTCTGAGCACCA+GGG 0.701255 1_2:+3079996 None:intergenic
TGTGGCCGATATATGTGTGA+AGG 0.705155 1_2:-3075626 Msa0049670:CDS
AGAAAATGTAGATATTACAG+GGG 0.712636 1_2:-3074494 Msa0049670:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAAATAAAATATA+GGG + chr1_2:3076051-3076070 None:intergenic 0.0%
!! TAAAATTAAAAATAAAATAT+AGG + chr1_2:3076052-3076071 None:intergenic 0.0%
!!! TATATTTTATTTTTAATTTT+AGG - chr1_2:3076051-3076070 Msa0049670:intron 0.0%
!!! ATATTTTATTTTTAATTTTA+GGG - chr1_2:3076052-3076071 Msa0049670:intron 0.0%
!! TATGTATGTATAAAATAAAA+TGG - chr1_2:3075380-3075399 Msa0049670:intron 10.0%
!! ATTTAATAAATTACATTAGA+AGG - chr1_2:3076746-3076765 Msa0049670:intron 10.0%
!!! ATTATTTATCTTTATTGATT+TGG - chr1_2:3077879-3077898 Msa0049670:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr1_2:3079066-3079085 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr1_2:3079067-3079086 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_2:3077239-3077258 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_2:3077239-3077258 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_2:3077239-3077258 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_2:3077239-3077258 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_2:3077239-3077258 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_2:3077239-3077258 None:intergenic 100.0%
!! AATATCCAATAACATAATTA+AGG + chr1_2:3075436-3075455 None:intergenic 15.0%
!! ACAAATTTAAGTAAAAGATT+CGG + chr1_2:3076641-3076660 None:intergenic 15.0%
!!! TTTTTATCTTTTATACTATG+AGG + chr1_2:3076898-3076917 None:intergenic 15.0%
!!! AGATAAAAAAATGTTGTTTT+AGG - chr1_2:3076909-3076928 Msa0049670:intron 15.0%
!!! TTTTCTTATAATAAAATGCA+AGG - chr1_2:3077612-3077631 Msa0049670:intron 15.0%
!!! AGTTTTCAATTTAAAATACT+TGG - chr1_2:3077932-3077951 Msa0049670:intron 15.0%
!!! GTTTTCAATTTAAAATACTT+GGG - chr1_2:3077933-3077952 Msa0049670:intron 15.0%
!! TTTAAATACATTCACAAAAT+TGG + chr1_2:3078748-3078767 None:intergenic 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr1_2:3079001-3079020 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr1_2:3079002-3079021 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr1_2:3079065-3079084 None:intergenic 15.0%
!!! TTCAATTTTTCAAAAATCAA+AGG + chr1_2:3079976-3079995 None:intergenic 15.0%
!! ATCAATAAATAAATTGCATT+AGG - chr1_2:3080015-3080034 Msa0049670:CDS 15.0%
!! ACATATATCAAAATATAATG+TGG - chr1_2:3080304-3080323 Msa0049670:CDS 15.0%
!! TTAAGTATTCATTTAAATTG+TGG - chr1_2:3080459-3080478 Msa0049670:five_prime_UTR 15.0%
!!! AATATCTACATTTTCTTTTT+TGG + chr1_2:3080600-3080619 None:intergenic 15.0%
!!! ATAAAATGGTTAATTTTCCT+TGG - chr1_2:3075394-3075413 Msa0049670:intron 20.0%
!! ATTCACCTTAATTATGTTAT+TGG - chr1_2:3075428-3075447 Msa0049670:intron 20.0%
!! AATAATCTTGCAAAAAATGT+TGG + chr1_2:3076004-3076023 None:intergenic 20.0%
!! TTAATGTATGTACAAGAAAA+GGG + chr1_2:3076568-3076587 None:intergenic 20.0%
!! TTGTACATACATTAACAATA+CGG - chr1_2:3076573-3076592 Msa0049670:intron 20.0%
!!! TTAAATTTGTCTTCTGTTTT+TGG - chr1_2:3076651-3076670 Msa0049670:intron 20.0%
!! ACTTGTAAGGAAAAATAAAA+GGG + chr1_2:3077008-3077027 None:intergenic 20.0%
!! TACTTGTAAGGAAAAATAAA+AGG + chr1_2:3077009-3077028 None:intergenic 20.0%
!! TTCTATAATTCTGTTACTAA+TGG + chr1_2:3077063-3077082 None:intergenic 20.0%
!!! AGGTATATTGATTGATATTT+TGG - chr1_2:3078065-3078084 Msa0049670:intron 20.0%
!! TGCATTGGATTAATTATTAA+TGG - chr1_2:3078672-3078691 Msa0049670:intron 20.0%
!! AATTATTAATGGCTTAAGAT+TGG - chr1_2:3078683-3078702 Msa0049670:intron 20.0%
!!! GACACTTTTTTTTAGTAAAT+GGG + chr1_2:3078932-3078951 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr1_2:3078969-3078988 None:intergenic 20.0%
!! AAAGTGGAATATATTGAATT+GGG + chr1_2:3079042-3079061 None:intergenic 20.0%
!! CAATAATCAAAATTGTTTAC+GGG + chr1_2:3079392-3079411 None:intergenic 20.0%
!! CCAATAATCAAAATTGTTTA+CGG + chr1_2:3079393-3079412 None:intergenic 20.0%
!!! ATTTTGATTATTGGAATAAC+TGG - chr1_2:3079399-3079418 Msa0049670:CDS 20.0%
!!! TGAAAATGTTAAGTTTCTTT+TGG + chr1_2:3079579-3079598 None:intergenic 20.0%
!!! ATTTTTCTGTATATATTCAC+AGG - chr1_2:3079904-3079923 Msa0049670:intron 20.0%
!! CAAATTGAATGGAAATAATA+CGG + chr1_2:3080388-3080407 None:intergenic 20.0%
!! AAAGAAAATGTAGATATTAC+AGG - chr1_2:3080602-3080621 Msa0049670:five_prime_UTR 20.0%
!! AAGAAAATGTAGATATTACA+GGG - chr1_2:3080603-3080622 Msa0049670:five_prime_UTR 20.0%
! ATAATGAATTGAAAATGCAG+TGG + chr1_2:3074602-3074621 None:intergenic 25.0%
!! AGATTGATTTAGAAACTAAC+TGG + chr1_2:3075269-3075288 None:intergenic 25.0%
!! AGTTAGTTTCTAAATCAATC+TGG - chr1_2:3075268-3075287 Msa0049670:intron 25.0%
!! GTTAGTTTCTAAATCAATCT+GGG - chr1_2:3075269-3075288 Msa0049670:intron 25.0%
! TTAGTTTCTAAATCAATCTG+GGG - chr1_2:3075270-3075289 Msa0049670:intron 25.0%
!! TTTGATTGGCTAAAAAACAT+GGG + chr1_2:3075316-3075335 None:intergenic 25.0%
! GAATGTGAAATTGCTAAATA+TGG + chr1_2:3075344-3075363 None:intergenic 25.0%
! TCAAATCATTTCTGACAAAT+CGG + chr1_2:3075481-3075500 None:intergenic 25.0%
!! TAATCTATCTAAAGCATTTC+AGG - chr1_2:3075748-3075767 Msa0049670:intron 25.0%
! ATTTAAATCTGAATCTTCAC+TGG - chr1_2:3075838-3075857 Msa0049670:intron 25.0%
!!! GCTTCTAGAATTAATACATA+AGG + chr1_2:3076276-3076295 None:intergenic 25.0%
!! TATGTATTAATTCTAGAAGC+TGG - chr1_2:3076276-3076295 Msa0049670:intron 25.0%
! AAATACAATTTACTCTGACT+TGG + chr1_2:3076315-3076334 None:intergenic 25.0%
!! AAGAATCATTCTCATTTTAG+TGG - chr1_2:3076371-3076390 Msa0049670:intron 25.0%
! GTTAATGTATGTACAAGAAA+AGG + chr1_2:3076569-3076588 None:intergenic 25.0%
! TAAAAGATTCGGAAACAATA+AGG + chr1_2:3076630-3076649 None:intergenic 25.0%
! AAATAGTATTTAATCACCAC+TGG - chr1_2:3076774-3076793 Msa0049670:intron 25.0%
! TTGTAAGGAAAAATAAAAGG+GGG + chr1_2:3077006-3077025 None:intergenic 25.0%
! CTTGTAAGGAAAAATAAAAG+GGG + chr1_2:3077007-3077026 None:intergenic 25.0%
! TAACAAAAGCAAGTAAATAG+GGG + chr1_2:3077211-3077230 None:intergenic 25.0%
! GTAACAAAAGCAAGTAAATA+GGG + chr1_2:3077212-3077231 None:intergenic 25.0%
! TGTAACAAAAGCAAGTAAAT+AGG + chr1_2:3077213-3077232 None:intergenic 25.0%
!!! TTTCGTATGACTTTTTTCTT+TGG - chr1_2:3077834-3077853 Msa0049670:intron 25.0%
! TTAAATTGAAAACTATCAGC+AGG + chr1_2:3077926-3077945 None:intergenic 25.0%
! TTATTGACACTCTTTCATTT+AGG - chr1_2:3078045-3078064 Msa0049670:intron 25.0%
!!! TATTTTGGAGAAAATCATGA+AGG - chr1_2:3078080-3078099 Msa0049670:intron 25.0%
!!! ATTTTGGAGAAAATCATGAA+GGG - chr1_2:3078081-3078100 Msa0049670:intron 25.0%
! ACATGAAACTAAGACAAAAT+CGG + chr1_2:3078379-3078398 None:intergenic 25.0%
!!! ATGTTCCTTTTTGTTATGTT+TGG - chr1_2:3078514-3078533 Msa0049670:CDS 25.0%
! CATTCAAAAACATATTCTAC+CGG + chr1_2:3078652-3078671 None:intergenic 25.0%
!!! ATATGTTTTTGAATGTGCAT+TGG - chr1_2:3078657-3078676 Msa0049670:intron 25.0%
!! TAATATTGAGTGGATTTAGA+GGG + chr1_2:3078822-3078841 None:intergenic 25.0%
! TAAATCCACTCAATATTAGA+GGG - chr1_2:3078824-3078843 Msa0049670:CDS 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG + chr1_2:3078933-3078952 None:intergenic 25.0%
! GAAAGTGGAATATATTGAAT+TGG + chr1_2:3079043-3079062 None:intergenic 25.0%
!!! TTCTTGTTTTTAGGTTTCTT+CGG - chr1_2:3079332-3079351 Msa0049670:CDS 25.0%
!!! CCGTAAACAATTTTGATTAT+TGG - chr1_2:3079390-3079409 Msa0049670:CDS 25.0%
! TGCCAAATGTCATAATTTAT+AGG - chr1_2:3079433-3079452 Msa0049670:CDS 25.0%
! GCCAAATGTCATAATTTATA+GGG - chr1_2:3079434-3079453 Msa0049670:CDS 25.0%
!!! GATTATTTTTGTGTCTAATC+AGG - chr1_2:3079719-3079738 Msa0049670:intron 25.0%
!! AATTTAACTGTGCAGATTTT+AGG + chr1_2:3079933-3079952 None:intergenic 25.0%
!! AGTGTAAAAATACCGAATTT+TGG - chr1_2:3080066-3080085 Msa0049670:CDS 25.0%
!! TGTTTCTCTAAAAATACCTT+TGG - chr1_2:3080091-3080110 Msa0049670:CDS 25.0%
! AGTAGTATACACAAATTGAA+TGG + chr1_2:3080399-3080418 None:intergenic 25.0%
! AGTATTCATTTAAATTGTGG+TGG - chr1_2:3080462-3080481 Msa0049670:five_prime_UTR 25.0%
! AGAAAATGTAGATATTACAG+GGG - chr1_2:3080604-3080623 Msa0049670:five_prime_UTR 25.0%
! GGAATTCATCATATTTTGTG+TGG - chr1_2:3074456-3074475 Msa0049670:three_prime_UTR 30.0%
TGTCAACTTCAAATCTGAAT+TGG + chr1_2:3074539-3074558 None:intergenic 30.0%
AATACAACACTTTCACTTTC+AGG - chr1_2:3074728-3074747 Msa0049670:intron 30.0%
!! AATACTACTGTACTTGTTGT+TGG - chr1_2:3075115-3075134 Msa0049670:intron 30.0%
AACTAACTGGTCATCAATTA+TGG + chr1_2:3075256-3075275 None:intergenic 30.0%
! GTTTGATTGGCTAAAAAACA+TGG + chr1_2:3075317-3075336 None:intergenic 30.0%
! TAAATATGGTGGTGTTTGAT+TGG + chr1_2:3075330-3075349 None:intergenic 30.0%
TGTGAAATTGCTAAATATGG+TGG + chr1_2:3075341-3075360 None:intergenic 30.0%
GACAGTTTCAAAACATAAAC+TGG - chr1_2:3075499-3075518 Msa0049670:intron 30.0%
!! ATCAACTTTTTCTGCAATGA+AGG - chr1_2:3075535-3075554 Msa0049670:intron 30.0%
GTAGTTACCTCAAAATATGA+TGG - chr1_2:3075899-3075918 Msa0049670:intron 30.0%
! TTACCTCAAAATATGATGGA+GGG - chr1_2:3075903-3075922 Msa0049670:intron 30.0%
ATTCTCAGTGAACTCAAATT+TGG + chr1_2:3075936-3075955 None:intergenic 30.0%
! AAATTTGAGTTCACTGAGAA+TGG - chr1_2:3075935-3075954 Msa0049670:intron 30.0%
AAAAAAGCTTTCTCTACCTT+TGG - chr1_2:3076110-3076129 Msa0049670:intron 30.0%
AAAAAGCTTTCTCTACCTTT+GGG - chr1_2:3076111-3076130 Msa0049670:intron 30.0%
TGCAAGAATTAGTACAAAAG+TGG - chr1_2:3076335-3076354 Msa0049670:intron 30.0%
GCAAGAATTAGTACAAAAGT+GGG - chr1_2:3076336-3076355 Msa0049670:intron 30.0%
! TACAAAAGTGGGATTTTGTA+GGG - chr1_2:3076347-3076366 Msa0049670:intron 30.0%
ATTCGGAAACAATAAGGTAT+TGG + chr1_2:3076624-3076643 None:intergenic 30.0%
AAAGCCAGTTATTGAACTAA+TGG + chr1_2:3076851-3076870 None:intergenic 30.0%
!!! ATGTTGTTTTAGGACATTCA+AGG - chr1_2:3076919-3076938 Msa0049670:intron 30.0%
TAAAAGTTGTTACTAGACAG+AGG + chr1_2:3076961-3076980 None:intergenic 30.0%
TGTAAGGAAAAATAAAAGGG+GGG + chr1_2:3077005-3077024 None:intergenic 30.0%
TTAGAAACCAAGCAATAGTT+AGG - chr1_2:3077166-3077185 Msa0049670:intron 30.0%
AACAAAAGCAAGTAAATAGG+GGG + chr1_2:3077210-3077229 None:intergenic 30.0%
! TCTGAAACAAGAGTGAATAT+AGG + chr1_2:3077342-3077361 None:intergenic 30.0%
! TATATTCACTCTTGTTTCAG+AGG - chr1_2:3077341-3077360 Msa0049670:intron 30.0%
AAATGTATGAAAACACCTAC+AGG + chr1_2:3077442-3077461 None:intergenic 30.0%
ATATGCTTGTCTAATGTTCA+TGG - chr1_2:3077499-3077518 Msa0049670:intron 30.0%
TTTCTATCTTCTTGAAGATG+TGG - chr1_2:3077707-3077726 Msa0049670:CDS 30.0%
GAGTTGAAGTTTATAAGACA+TGG + chr1_2:3077751-3077770 None:intergenic 30.0%
ATGTAACATAACAGCATCAA+AGG + chr1_2:3077791-3077810 None:intergenic 30.0%
! CAATTTAAAATACTTGGGTC+TGG - chr1_2:3077938-3077957 Msa0049670:intron 30.0%
GTGTCAATAAGTGATTATTG+CGG + chr1_2:3078035-3078054 None:intergenic 30.0%
GAAAAGAAGAATGCATAACT+AGG - chr1_2:3078251-3078270 Msa0049670:intron 30.0%
CAATAGAATATACATCTTCC+AGG + chr1_2:3078279-3078298 None:intergenic 30.0%
TCACATGCAAAACTTACATT+AGG + chr1_2:3078332-3078351 None:intergenic 30.0%
! CTAATATTGAGTGGATTTAG+AGG + chr1_2:3078823-3078842 None:intergenic 30.0%
CTAAATCCACTCAATATTAG+AGG - chr1_2:3078823-3078842 Msa0049670:CDS 30.0%
AAATCCACTCAATATTAGAG+GGG - chr1_2:3078825-3078844 Msa0049670:CDS 30.0%
! AGTATTTGGTTTAGGGTATA+TGG + chr1_2:3078887-3078906 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr1_2:3079058-3079077 None:intergenic 30.0%
!!! CATACACGTTTCTTGTTTTT+AGG - chr1_2:3079323-3079342 Msa0049670:CDS 30.0%
GCCCTATAAATTATGACATT+TGG + chr1_2:3079438-3079457 None:intergenic 30.0%
! TAACATTTTCAACCTTGTCT+AGG - chr1_2:3079588-3079607 Msa0049670:intron 30.0%
TGAATGCAGATTAGATCAAA+AGG + chr1_2:3079691-3079710 None:intergenic 30.0%
! TTTTGATCTAATCTGCATTC+AGG - chr1_2:3079690-3079709 Msa0049670:intron 30.0%
TTTGATCTAATCTGCATTCA+GGG - chr1_2:3079691-3079710 Msa0049670:intron 30.0%
AGATAGTTATTTGCTTTGTC+CGG + chr1_2:3079756-3079775 None:intergenic 30.0%
TAGAAGTAGAAGCAATTTGA+CGG + chr1_2:3079857-3079876 None:intergenic 30.0%
TAGAGAAACAAGCCAAAATT+CGG + chr1_2:3080081-3080100 None:intergenic 30.0%
TTGATATATGTATCATCCCT+TGG + chr1_2:3080295-3080314 None:intergenic 30.0%
!! TTGAACATTGACTCATTTAC+AGG - chr1_2:3080498-3080517 Msa0049670:five_prime_UTR 30.0%
! TCATCATATTTTGTGTGGCT+TGG - chr1_2:3074461-3074480 Msa0049670:three_prime_UTR 35.0%
!! GAAAGTAGTGTTGATTTGTG+AGG + chr1_2:3074759-3074778 None:intergenic 35.0%
! ATCAATCTGGGGTACAAAAA+AGG - chr1_2:3075281-3075300 Msa0049670:three_prime_UTR 35.0%
GTGAATTGTCTTCTAAACCA+AGG + chr1_2:3075414-3075433 None:intergenic 35.0%
! TTTTTCTGCAATGAAGGCTT+TGG - chr1_2:3075541-3075560 Msa0049670:intron 35.0%
TCAGGATCACAACAATCAAT+TGG - chr1_2:3075766-3075785 Msa0049670:intron 35.0%
AAATCTGAATCTTCACTGGA+TGG - chr1_2:3075842-3075861 Msa0049670:intron 35.0%
GTTACCTCAAAATATGATGG+AGG - chr1_2:3075902-3075921 Msa0049670:intron 35.0%
AGGGGTAAAATCAGAATTTC+AGG + chr1_2:3076032-3076051 None:intergenic 35.0%
TTAGGGTATGTCTTCAATAG+AGG - chr1_2:3076069-3076088 Msa0049670:intron 35.0%
ATGAGTTCATCTGTCATGAT+AGG - chr1_2:3076211-3076230 Msa0049670:intron 35.0%
ATCTGTCATGATAGGTATGA+GGG - chr1_2:3076219-3076238 Msa0049670:intron 35.0%
! GTACAAAAGTGGGATTTTGT+AGG - chr1_2:3076346-3076365 Msa0049670:intron 35.0%
!! TTCTCATTTTAGTGGCTCTA+TGG - chr1_2:3076379-3076398 Msa0049670:intron 35.0%
! ACAAGAAAAGGGTCTAAAAC+TGG + chr1_2:3076557-3076576 None:intergenic 35.0%
CTTTCCGAACCTTTGTAATA+GGG - chr1_2:3076872-3076891 Msa0049670:intron 35.0%
GACTCTAAGTGATACTTGTA+AGG + chr1_2:3077021-3077040 None:intergenic 35.0%
! TCTGTTACTAATGGACGTAA+TGG + chr1_2:3077054-3077073 None:intergenic 35.0%
AAGTAAAACAGGTTTGTGGT+GGG + chr1_2:3077123-3077142 None:intergenic 35.0%
TAAGTAAAACAGGTTTGTGG+TGG + chr1_2:3077124-3077143 None:intergenic 35.0%
! ACCACAAACCTGTTTTACTT+AGG - chr1_2:3077123-3077142 Msa0049670:intron 35.0%
TCCTAAGTAAAACAGGTTTG+TGG + chr1_2:3077127-3077146 None:intergenic 35.0%
AGAATGGTCCTAAGTAAAAC+AGG + chr1_2:3077134-3077153 None:intergenic 35.0%
CTTATTGCCTAACTATTGCT+TGG + chr1_2:3077176-3077195 None:intergenic 35.0%
ACAAAAGCAAGTAAATAGGG+GGG + chr1_2:3077209-3077228 None:intergenic 35.0%
GAGAAGCTTTCAGCTAATAT+TGG - chr1_2:3077399-3077418 Msa0049670:intron 35.0%
TATATAAAAGCCTTGCCTGT+AGG - chr1_2:3077424-3077443 Msa0049670:intron 35.0%
AAATGTTCAGAGCGATGATA+AGG - chr1_2:3077569-3077588 Msa0049670:intron 35.0%
AAAATGCAAGGATACCAACA+AGG - chr1_2:3077624-3077643 Msa0049670:intron 35.0%
! GGACAAGCTTTTAGTAAAAC+TGG - chr1_2:3078005-3078024 Msa0049670:intron 35.0%
TCAGATTACTAGAATCAAGC+AGG + chr1_2:3078226-3078245 None:intergenic 35.0%
GGTGACCAAACATAACAAAA+AGG + chr1_2:3078522-3078541 None:intergenic 35.0%
AAGATTCCTTGAGAAGATCT+GGG - chr1_2:3078568-3078587 Msa0049670:CDS 35.0%
AAAAGAAACTGTACCTGCAA+TGG + chr1_2:3078621-3078640 None:intergenic 35.0%
GATTTAGAGGGAAAGAAGAT+GGG + chr1_2:3078781-3078800 None:intergenic 35.0%
GATTTAGAGGGAAAGAAGAT+GGG + chr1_2:3078781-3078800 None:intergenic 35.0%
! TTTGGTTTAGGGTATATGGA+GGG + chr1_2:3078883-3078902 None:intergenic 35.0%
! ATTTGGTTTAGGGTATATGG+AGG + chr1_2:3078884-3078903 None:intergenic 35.0%
AGTAAATGGGTCAGATATTC+CGG + chr1_2:3078919-3078938 None:intergenic 35.0%
!! TGAAATGGCTCAGCTATTTT+GGG + chr1_2:3078954-3078973 None:intergenic 35.0%
! TTGAAATGGCTCAGCTATTT+TGG + chr1_2:3078955-3078974 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr1_2:3079087-3079106 Msa0049670:intron 35.0%
CGTGCTCTAATATTTGATCA+AGG - chr1_2:3079223-3079242 Msa0049670:CDS 35.0%
ATCAAGGAGACAGAATATCT+CGG - chr1_2:3079239-3079258 Msa0049670:CDS 35.0%
TCTATTCTTTACTGTCACTG+AGG - chr1_2:3079272-3079291 Msa0049670:CDS 35.0%
TGTATGATAGCAAATGTTGG+GGG + chr1_2:3079309-3079328 None:intergenic 35.0%
GTGTATGATAGCAAATGTTG+GGG + chr1_2:3079310-3079329 None:intergenic 35.0%
CGTGTATGATAGCAAATGTT+GGG + chr1_2:3079311-3079330 None:intergenic 35.0%
ACGTGTATGATAGCAAATGT+TGG + chr1_2:3079312-3079331 None:intergenic 35.0%
TGTTTCTTGCAGTTGAATCA+TGG + chr1_2:3079502-3079521 None:intergenic 35.0%
TTTGATGTGAGTAAACTGCT+TGG - chr1_2:3079527-3079546 Msa0049670:CDS 35.0%
TTCTACATAGCTGCATCAAA+TGG - chr1_2:3079872-3079891 Msa0049670:intron 35.0%
TTTCTTCCAGTTGTTGAAGT+AGG - chr1_2:3080194-3080213 Msa0049670:CDS 35.0%
ATGTTTCCTACTTCAACAAC+TGG + chr1_2:3080203-3080222 None:intergenic 35.0%
TTGACTACGTCAATCTCTTT+AGG - chr1_2:3080222-3080241 Msa0049670:CDS 35.0%
!! TCAATCTCTTTAGGACTGAT+CGG - chr1_2:3080231-3080250 Msa0049670:CDS 35.0%
GTGCAGTCAATAATACTCTA+TGG - chr1_2:3080261-3080280 Msa0049670:CDS 35.0%
ATATGTATCATCCCTTGGTT+GGG + chr1_2:3080290-3080309 None:intergenic 35.0%
TATATGTATCATCCCTTGGT+TGG + chr1_2:3080291-3080310 None:intergenic 35.0%
TAAGAGGGATAAATGGATCA+TGG + chr1_2:3080330-3080349 None:intergenic 35.0%
TTGTGTATACTACTGTCACT+TGG - chr1_2:3080405-3080424 Msa0049670:CDS 35.0%
! CTCATTTACAGGTCTTTTCA+AGG - chr1_2:3080509-3080528 Msa0049670:five_prime_UTR 35.0%
!! TTTACAGGTCTTTTCAAGGA+TGG - chr1_2:3080513-3080532 Msa0049670:five_prime_UTR 35.0%
AGATATTACAGGGGACTAAT+TGG - chr1_2:3080613-3080632 Msa0049670:five_prime_UTR 35.0%
AACACTCCCTATTTAGTACG+TGG - chr1_2:3074427-3074446 Msa0049670:three_prime_UTR 40.0%
GTGCTTCCACGTACTAAATA+GGG + chr1_2:3074436-3074455 None:intergenic 40.0%
CTATTTAGTACGTGGAAGCA+CGG - chr1_2:3074435-3074454 Msa0049670:three_prime_UTR 40.0%
! AATTGTTGTTGCTGAAGGTG+AGG + chr1_2:3074672-3074691 None:intergenic 40.0%
!! AGTAGTGTTGATTTGTGAGG+AGG + chr1_2:3074756-3074775 None:intergenic 40.0%
GAGGTTTGGAGAAAATTCTC+TGG - chr1_2:3074986-3075005 Msa0049670:intron 40.0%
TTGGAGAAAATTCTCTGGAC+TGG - chr1_2:3074991-3075010 Msa0049670:intron 40.0%
TGGAGAAAATTCTCTGGACT+GGG - chr1_2:3074992-3075011 Msa0049670:intron 40.0%
! GACTATACGTACTGATGATG+TGG - chr1_2:3075027-3075046 Msa0049670:intron 40.0%
! TATACGTACTGATGATGTGG+AGG - chr1_2:3075030-3075049 Msa0049670:intron 40.0%
GGACAACAATTCGACCTATA+CGG + chr1_2:3075150-3075169 None:intergenic 40.0%
TTGGCTAAAAAACATGGGAC+TGG + chr1_2:3075311-3075330 None:intergenic 40.0%
! AATGAAGGCTTTGGTAAGGA+AGG - chr1_2:3075550-3075569 Msa0049670:intron 40.0%
ATCACTATCTCTACTGACCT+TGG + chr1_2:3075602-3075621 None:intergenic 40.0%
AGGTCAGTAGAGATAGTGAT+TGG - chr1_2:3075602-3075621 Msa0049670:CDS 40.0%
GGTCAGTAGAGATAGTGATT+GGG - chr1_2:3075603-3075622 Msa0049670:CDS 40.0%
GTCAGTAGAGATAGTGATTG+GGG - chr1_2:3075604-3075623 Msa0049670:CDS 40.0%
TATCACTGGTGATCTCTTCA+GGG - chr1_2:3075706-3075725 Msa0049670:intron 40.0%
TGAATCTTCACTGGATGGAT+GGG - chr1_2:3075847-3075866 Msa0049670:intron 40.0%
! CATCCCTCCATCATATTTTG+AGG + chr1_2:3075909-3075928 None:intergenic 40.0%
! CTCAAAATATGATGGAGGGA+TGG - chr1_2:3075907-3075926 Msa0049670:intron 40.0%
!!! CTGCTGTTTTCTCAGGTATA+TGG - chr1_2:3075960-3075979 Msa0049670:intron 40.0%
! GTTTTCTCAGGTATATGGAG+AGG - chr1_2:3075965-3075984 Msa0049670:intron 40.0%
CATCTGTCATGATAGGTATG+AGG - chr1_2:3076218-3076237 Msa0049670:intron 40.0%
CCTGTCATGGTAATACAGAT+AGG + chr1_2:3076490-3076509 None:intergenic 40.0%
CCTATCTGTATTACCATGAC+AGG - chr1_2:3076487-3076506 Msa0049670:intron 40.0%
!! GCCATTTTCATCATTTCGTC+CGG - chr1_2:3076517-3076536 Msa0049670:CDS 40.0%
ACCGGACGAAATGATGAAAA+TGG + chr1_2:3076521-3076540 None:intergenic 40.0%
TTGGACATTACCTGTCTTCT+AGG + chr1_2:3076605-3076624 None:intergenic 40.0%
TCAGAGACAAGACAAATGCA+AGG + chr1_2:3076678-3076697 None:intergenic 40.0%
TCGAGGTTCAAATGTTCAAC+CGG + chr1_2:3076818-3076837 None:intergenic 40.0%
GGCTCCATTAGTTCAATAAC+TGG - chr1_2:3076844-3076863 Msa0049670:intron 40.0%
GCTTTCCGAACCTTTGTAAT+AGG - chr1_2:3076871-3076890 Msa0049670:intron 40.0%
ACTATGAGGCCCTATTACAA+AGG + chr1_2:3076884-3076903 None:intergenic 40.0%
GAAAAATAAAAGGGGGGAAG+GGG + chr1_2:3076999-3077018 None:intergenic 40.0%
GGAAAAATAAAAGGGGGGAA+GGG + chr1_2:3077000-3077019 None:intergenic 40.0%
AGGAAAAATAAAAGGGGGGA+AGG + chr1_2:3077001-3077020 None:intergenic 40.0%
! AAGAATAGACGGGGTTAGTA+AGG + chr1_2:3077100-3077119 None:intergenic 40.0%
! TTTGTGGTGGGAAGAATAGA+CGG + chr1_2:3077111-3077130 None:intergenic 40.0%
CTATTGCTTGGTTTCTAAGC+AGG + chr1_2:3077164-3077183 None:intergenic 40.0%
AGTCTGCGCAGAAAAAAAGA+GGG + chr1_2:3077267-3077286 None:intergenic 40.0%
AAGTCTGCGCAGAAAAAAAG+AGG + chr1_2:3077268-3077287 None:intergenic 40.0%
AGTAAATGCGTCAAAGAACC+AGG - chr1_2:3077372-3077391 Msa0049670:intron 40.0%
TATGAAAACACCTACAGGCA+AGG + chr1_2:3077437-3077456 None:intergenic 40.0%
CAACAAGGCAACTATAGTGT+GGG - chr1_2:3077639-3077658 Msa0049670:intron 40.0%
TTGTCCAATTGCTGACAACT+TGG - chr1_2:3077984-3078003 Msa0049670:intron 40.0%
TTGTCCAAGTTGTCAGCAAT+TGG + chr1_2:3077991-3078010 None:intergenic 40.0%
AGCAAGTTCTTAAAGCCAAG+AGG - chr1_2:3078430-3078449 Msa0049670:intron 40.0%
GCAAGTTCTTAAAGCCAAGA+GGG - chr1_2:3078431-3078450 Msa0049670:intron 40.0%
AACAAATGAACCTACCCTCT+TGG + chr1_2:3078448-3078467 None:intergenic 40.0%
GAAGATTCCTTGAGAAGATC+TGG - chr1_2:3078567-3078586 Msa0049670:CDS 40.0%
TGGATACACAATAGTTCGTC+CGG - chr1_2:3078593-3078612 Msa0049670:intron 40.0%
! CAGTTTCTTTTGTAGTGTGC+CGG - chr1_2:3078630-3078649 Msa0049670:intron 40.0%
GGATTTAGAGGGAAAGAAGA+TGG + chr1_2:3078782-3078801 None:intergenic 40.0%
GGATTTAGAGGGAAAGAAGA+TGG + chr1_2:3078782-3078801 None:intergenic 40.0%
! TTGGTTTAGGGTATATGGAG+GGG + chr1_2:3078882-3078901 None:intergenic 40.0%
GTAAATGGGTCAGATATTCC+GGG + chr1_2:3078918-3078937 None:intergenic 40.0%
! GACTTGAATGTTTTGCTGAC+AGG - chr1_2:3079183-3079202 Msa0049670:CDS 40.0%
TCAAGGAGACAGAATATCTC+GGG - chr1_2:3079240-3079259 Msa0049670:CDS 40.0%
TAGCAAATGTTGGGGGAAAT+AGG + chr1_2:3079302-3079321 None:intergenic 40.0%
GAGTGCCTTCACACATATAT+CGG + chr1_2:3079480-3079499 None:intergenic 40.0%
ACTCGTAACATACCTAGACA+AGG + chr1_2:3079603-3079622 None:intergenic 40.0%
GAACATACCTCCTACAAGTA+AGG - chr1_2:3079829-3079848 Msa0049670:intron 40.0%
TTTGACGGAACCTTACTTGT+AGG + chr1_2:3079842-3079861 None:intergenic 40.0%
GATCCATTTATCCCTCTTAG+AGG - chr1_2:3080331-3080350 Msa0049670:CDS 40.0%
CGTGCTTCCACGTACTAAAT+AGG + chr1_2:3074437-3074456 None:intergenic 45.0%
GACTGACAACTGACAGGAAT+CGG + chr1_2:3074517-3074536 None:intergenic 45.0%
GAATTGGACTGACAACTGAC+AGG + chr1_2:3074523-3074542 None:intergenic 45.0%
GTTGACACAAGTCCTCCAAT+TGG - chr1_2:3074552-3074571 Msa0049670:three_prime_UTR 45.0%
! GCAGCAATTGTTGTTGCTGA+AGG + chr1_2:3074677-3074696 None:intergenic 45.0%
!!! GCTGCTTTTTGGTGTATGAG+AGG + chr1_2:3074781-3074800 None:intergenic 45.0%
!! GTTGTTGTCGTCGTCGTTTT+GGG + chr1_2:3074885-3074904 None:intergenic 45.0%
GGCAGATATTCGATGAGGTT+TGG - chr1_2:3074972-3074991 Msa0049670:intron 45.0%
GATGCTCTTCTTGTTCGTGA+AGG - chr1_2:3075058-3075077 Msa0049670:intron 45.0%
CAGTAGTATTCTGAGCACCA+GGG + chr1_2:3075105-3075124 None:intergenic 45.0%
ACAGTAGTATTCTGAGCACC+AGG + chr1_2:3075106-3075125 None:intergenic 45.0%
TTGTCCGTAAACTCATGCTC+AGG - chr1_2:3075164-3075183 Msa0049670:intron 45.0%
TGTCCGTAAACTCATGCTCA+GGG - chr1_2:3075165-3075184 Msa0049670:intron 45.0%
AACCCCTGAGCATGAGTTTA+CGG + chr1_2:3075171-3075190 None:intergenic 45.0%
! CTGCAATGAAGGCTTTGGTA+AGG - chr1_2:3075546-3075565 Msa0049670:intron 45.0%
GAGATAGTGATTGGGGATGT+TGG - chr1_2:3075611-3075630 Msa0049670:CDS 45.0%
TGGTGATCCAAACACAGTCA+AGG - chr1_2:3075631-3075650 Msa0049670:CDS 45.0%
ATCACCAGTGATAGTTGAGC+GGG + chr1_2:3075699-3075718 None:intergenic 45.0%
GATCACCAGTGATAGTTGAG+CGG + chr1_2:3075700-3075719 None:intergenic 45.0%
CTATCACTGGTGATCTCTTC+AGG - chr1_2:3075705-3075724 Msa0049670:intron 45.0%
CTGAATCTTCACTGGATGGA+TGG - chr1_2:3075846-3075865 Msa0049670:intron 45.0%
!!! AATGGAGCTGCTGTTTTCTC+AGG - chr1_2:3075953-3075972 Msa0049670:intron 45.0%
GGGTATGTCTTCAATAGAGG+TGG - chr1_2:3076072-3076091 Msa0049670:intron 45.0%
!! CTGTCAAGAGTACTACCCAA+AGG + chr1_2:3076129-3076148 None:intergenic 45.0%
CTTTGGGTAGTACTCTTGAC+AGG - chr1_2:3076127-3076146 Msa0049670:intron 45.0%
TCATGATAGGTATGAGGGCT+TGG - chr1_2:3076224-3076243 Msa0049670:intron 45.0%
! ATTCTAGAAGCTGGTCCTTC+AGG - chr1_2:3076285-3076304 Msa0049670:intron 45.0%
! TTCTAGAAGCTGGTCCTTCA+GGG - chr1_2:3076286-3076305 Msa0049670:intron 45.0%
AATGGCACTCTAACCTGTCA+TGG + chr1_2:3076503-3076522 None:intergenic 45.0%
! ACTGGATGATCTGGTTTCAC+CGG + chr1_2:3076539-3076558 None:intergenic 45.0%
! GGGTCTAAAACTGGATGATC+TGG + chr1_2:3076548-3076567 None:intergenic 45.0%
TTCAACTGCGATCTTACCAG+TGG + chr1_2:3076793-3076812 None:intergenic 45.0%
GTAAGATCGCAGTTGAACTC+CGG - chr1_2:3076796-3076815 Msa0049670:intron 45.0%
GGTTGAACATTTGAACCTCG+AGG - chr1_2:3076817-3076836 Msa0049670:intron 45.0%
GAGGCCCTATTACAAAGGTT+CGG + chr1_2:3076879-3076898 None:intergenic 45.0%
TGTTACTAGACAGAGGAGCA+AGG + chr1_2:3076954-3076973 None:intergenic 45.0%
TATCACTTAGAGTCCTCCAG+TGG - chr1_2:3077027-3077046 Msa0049670:intron 45.0%
! TAATGGACGTAATGGTCCAC+TGG + chr1_2:3077046-3077065 None:intergenic 45.0%
! TTGTGGTGGGAAGAATAGAC+GGG + chr1_2:3077110-3077129 None:intergenic 45.0%
CTAAGCAGGAGCAGTTAGAA+TGG + chr1_2:3077150-3077169 None:intergenic 45.0%
TCTGCGCAGAAAAAAAGAGG+GGG + chr1_2:3077265-3077284 None:intergenic 45.0%
GTCTGCGCAGAAAAAAAGAG+GGG + chr1_2:3077266-3077285 None:intergenic 45.0%
CCACACTATAGTTGCCTTGT+TGG + chr1_2:3077641-3077660 None:intergenic 45.0%
CCAACAAGGCAACTATAGTG+TGG - chr1_2:3077638-3077657 Msa0049670:intron 45.0%
AGAATGCATAACTAGGCACC+TGG - chr1_2:3078258-3078277 Msa0049670:intron 45.0%
GTTCTTAAAGCCAAGAGGGT+AGG - chr1_2:3078435-3078454 Msa0049670:intron 45.0%
ACCTTAATCCCGAATTCTCC+AGG - chr1_2:3078539-3078558 Msa0049670:CDS 45.0%
GGATACACAATAGTTCGTCC+GGG - chr1_2:3078594-3078613 Msa0049670:intron 45.0%
! GATGGGTGAGTGGATTTAGA+GGG + chr1_2:3078793-3078812 None:intergenic 45.0%
! AGATGGGTGAGTGGATTTAG+AGG + chr1_2:3078794-3078813 None:intergenic 45.0%
TGCTCCCCTCTAATATTGAG+TGG + chr1_2:3078832-3078851 None:intergenic 45.0%
! TTTAGGGTATATGGAGGGGA+AGG + chr1_2:3078878-3078897 None:intergenic 45.0%
!! CGGAGGGAGTATTTGGTTTA+GGG + chr1_2:3078894-3078913 None:intergenic 45.0%
!! ACGGAGGGAGTATTTGGTTT+AGG + chr1_2:3078895-3078914 None:intergenic 45.0%
! CCAAACTGGCTCAGATATAC+CGG - chr1_2:3079101-3079120 Msa0049670:intron 45.0%
! CAAACTGGCTCAGATATACC+GGG - chr1_2:3079102-3079121 Msa0049670:intron 45.0%
! TTTTGCTGACAGGAAGAACC+TGG - chr1_2:3079193-3079212 Msa0049670:CDS 45.0%
TGTGGCCGATATATGTGTGA+AGG - chr1_2:3079472-3079491 Msa0049670:CDS 45.0%
ATGTTACGAGTACGTTGCTG+AGG - chr1_2:3079612-3079631 Msa0049670:intron 45.0%
! TGGGAATGAGCTTTATGAGC+TGG - chr1_2:3079636-3079655 Msa0049670:intron 45.0%
ATTTGCTTTGTCCGGCAAGT+GGG + chr1_2:3079748-3079767 None:intergenic 45.0%
TATTTGCTTTGTCCGGCAAG+TGG + chr1_2:3079749-3079768 None:intergenic 45.0%
GAAGAATACCTGAACATCCC+TGG - chr1_2:3079800-3079819 Msa0049670:intron 45.0%
! TTGTAGGAGGTATGTTCTCC+AGG + chr1_2:3079826-3079845 None:intergenic 45.0%
!! ATACCTTTGGAGTTGCATGC+TGG - chr1_2:3080104-3080123 Msa0049670:CDS 45.0%
ATTCCAGCATGCAACTCCAA+AGG + chr1_2:3080110-3080129 None:intergenic 45.0%
TGGAATCACTCTTCTTGAGC+CGG - chr1_2:3080124-3080143 Msa0049670:CDS 45.0%
! CCACCTCTAAGAGGGATAAA+TGG + chr1_2:3080337-3080356 None:intergenic 45.0%
CCATTTATCCCTCTTAGAGG+TGG - chr1_2:3080334-3080353 Msa0049670:CDS 45.0%
! TAGACAGACCACCTCTAAGA+GGG + chr1_2:3080345-3080364 None:intergenic 45.0%
ATAGACAGACCACCTCTAAG+AGG + chr1_2:3080346-3080365 None:intergenic 45.0%
!! AAATTAAAAATAAAATATAG+GGG + chr1_2:3076050-3076069 None:intergenic 5.0%
GACAACTGACAGGAATCGGA+TGG + chr1_2:3074513-3074532 None:intergenic 50.0%
GATCGCTCGCAATTGCCAAT+TGG + chr1_2:3074570-3074589 None:intergenic 50.0%
TCTTTGCCATCCCTGGTGTT+TGG + chr1_2:3074848-3074867 None:intergenic 50.0%
! CGTTGTTGTCGTCGTCGTTT+TGG + chr1_2:3074886-3074905 None:intergenic 50.0%
ATCTTCGACCAAGTCCCACA+GGG + chr1_2:3074949-3074968 None:intergenic 50.0%
ATCGCGGCAGATATTCGATG+AGG - chr1_2:3074967-3074986 Msa0049670:intron 50.0%
GGGATGGCAAACTCACACAT+AGG + chr1_2:3075085-3075104 None:intergenic 50.0%
ATGTGTGAGTTTGCCATCCC+TGG - chr1_2:3075085-3075104 Msa0049670:intron 50.0%
AGTATTCTGAGCACCAGGGA+TGG + chr1_2:3075101-3075120 None:intergenic 50.0%
!! GTTGGTGCTACTAGCCGTAT+AGG - chr1_2:3075133-3075152 Msa0049670:intron 50.0%
GTCCGTAAACTCATGCTCAG+GGG - chr1_2:3075166-3075185 Msa0049670:intron 50.0%
GGTAAGGAAGGCAGATGAAG+AGG - chr1_2:3075562-3075581 Msa0049670:intron 50.0%
AAGGAAGGCAGATGAAGAGG+TGG - chr1_2:3075565-3075584 Msa0049670:intron 50.0%
ACAGCAGCCTTGACTGTGTT+TGG + chr1_2:3075641-3075660 None:intergenic 50.0%
ACAGTCAAGGCTGCTGTAGA+AGG - chr1_2:3075644-3075663 Msa0049670:CDS 50.0%
! CTCTTCAGGGTTGATCAGCA+AGG - chr1_2:3075719-3075738 Msa0049670:intron 50.0%
GATGGATGGGAAGTTCGTCA+AGG - chr1_2:3075860-3075879 Msa0049670:CDS 50.0%
TCTAGAAGCTGGTCCTTCAG+GGG - chr1_2:3076287-3076306 Msa0049670:intron 50.0%
ACGGTTTGAGCCTAGAAGAC+AGG - chr1_2:3076592-3076611 Msa0049670:intron 50.0%
ACATTTGAACCTCGAGGCAG+TGG - chr1_2:3076823-3076842 Msa0049670:intron 50.0%
GACAGAGGAGCAAGGAATCA+GGG + chr1_2:3076946-3076965 None:intergenic 50.0%
AGACAGAGGAGCAAGGAATC+AGG + chr1_2:3076947-3076966 None:intergenic 50.0%
! TGTGGTGGGAAGAATAGACG+GGG + chr1_2:3077109-3077128 None:intergenic 50.0%
TGCGCAGAAAAAAAGAGGGG+GGG + chr1_2:3077263-3077282 None:intergenic 50.0%
CTGCGCAGAAAAAAAGAGGG+GGG + chr1_2:3077264-3077283 None:intergenic 50.0%
GCTGAAAGCTTCTCGAATCC+TGG + chr1_2:3077393-3077412 None:intergenic 50.0%
CATGTGAATATGCCGCAGAC+TGG - chr1_2:3078345-3078364 Msa0049670:intron 50.0%
TCGGTTTCTTGTCCAGTCTG+CGG + chr1_2:3078360-3078379 None:intergenic 50.0%
! TTGGTATTGAGCCTTCCAGG+CGG - chr1_2:3078406-3078425 Msa0049670:intron 50.0%
! TTTAAGAACTTGCTCCCGCC+TGG + chr1_2:3078424-3078443 None:intergenic 50.0%
GCCTGGAGAATTCGGGATTA+AGG + chr1_2:3078543-3078562 None:intergenic 50.0%
TAATCCCGAATTCTCCAGGC+AGG - chr1_2:3078543-3078562 Msa0049670:CDS 50.0%
TTCACCTGCCTGGAGAATTC+GGG + chr1_2:3078550-3078569 None:intergenic 50.0%
CTTCACCTGCCTGGAGAATT+CGG + chr1_2:3078551-3078570 None:intergenic 50.0%
TCAAGGAATCTTCACCTGCC+TGG + chr1_2:3078560-3078579 None:intergenic 50.0%
TCCTTGAGAAGATCTGGGCT+TGG - chr1_2:3078573-3078592 Msa0049670:CDS 50.0%
TCCAAGCCCAGATCTTCTCA+AGG + chr1_2:3078577-3078596 None:intergenic 50.0%
AACTGTACCTGCAATGGACC+CGG + chr1_2:3078615-3078634 None:intergenic 50.0%
AGGGAAAGAAGATGGGTGAG+TGG + chr1_2:3078803-3078822 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr1_2:3078914-3078933 None:intergenic 50.0%
CCGGTATATCTGAGCCAGTT+TGG + chr1_2:3079104-3079123 None:intergenic 50.0%
TACGAGTACGTTGCTGAGGA+TGG - chr1_2:3079616-3079635 Msa0049670:intron 50.0%
ACGAGTACGTTGCTGAGGAT+GGG - chr1_2:3079617-3079636 Msa0049670:intron 50.0%
! TAATCAGGTTGCCCACTTGC+CGG - chr1_2:3079734-3079753 Msa0049670:intron 50.0%
TTCTCCAAGACAGAGAGAGC+TGG + chr1_2:3079783-3079802 None:intergenic 50.0%
GACGGAACCTTACTTGTAGG+AGG + chr1_2:3079839-3079858 None:intergenic 50.0%
ATCACTCTTCTTGAGCCGGA+AGG - chr1_2:3080128-3080147 Msa0049670:CDS 50.0%
TCTTCTTGAGCCGGAAGGAT+AGG - chr1_2:3080133-3080152 Msa0049670:CDS 50.0%
CTTCTTGAGCCGGAAGGATA+GGG - chr1_2:3080134-3080153 Msa0049670:CDS 50.0%
TTCTTGAGCCGGAAGGATAG+GGG - chr1_2:3080135-3080154 Msa0049670:CDS 50.0%
TCTACCATCCCCTATCCTTC+CGG + chr1_2:3080146-3080165 None:intergenic 50.0%
ACTCTATGGAGACCCAACCA+AGG - chr1_2:3080275-3080294 Msa0049670:CDS 50.0%
CTCTATGGAGACCCAACCAA+GGG - chr1_2:3080276-3080295 Msa0049670:CDS 50.0%
CGCTCGCAATTGCCAATTGG+AGG + chr1_2:3074567-3074586 None:intergenic 55.0%
!!! GGAGCGGGTATGCTGCTTTT+TGG + chr1_2:3074792-3074811 None:intergenic 55.0%
CAGTCGTTGTACAGAGGAGC+GGG + chr1_2:3074807-3074826 None:intergenic 55.0%
GCAGTCGTTGTACAGAGGAG+CGG + chr1_2:3074808-3074827 None:intergenic 55.0%
AGGAGGCAGTCGTTGTACAG+AGG + chr1_2:3074813-3074832 None:intergenic 55.0%
! TTTGGAGCAGCGGCTATAGG+AGG + chr1_2:3074830-3074849 None:intergenic 55.0%
! GTGTTTGGAGCAGCGGCTAT+AGG + chr1_2:3074833-3074852 None:intergenic 55.0%
! ATCCCTGGTGTTTGGAGCAG+CGG + chr1_2:3074840-3074859 None:intergenic 55.0%
! CTTGCTGTCTTTGCCATCCC+TGG + chr1_2:3074855-3074874 None:intergenic 55.0%
GATCTTCGACCAAGTCCCAC+AGG + chr1_2:3074950-3074969 None:intergenic 55.0%
! TGGGACTTGGTCGAAGATCG+CGG - chr1_2:3074951-3074970 Msa0049670:intron 55.0%
! CTGGACTGGGTCAGATCTCT+AGG - chr1_2:3075005-3075024 Msa0049670:intron 55.0%
GCTCAGGGGTTACTCTGTCA+AGG - chr1_2:3075180-3075199 Msa0049670:intron 55.0%
AGGTGGTAGAGCTGCTTCCA+AGG - chr1_2:3075582-3075601 Msa0049670:intron 55.0%
AGTGATAGTTGAGCGGGCAG+TGG + chr1_2:3075693-3075712 None:intergenic 55.0%
ACTGCCCGCTCAACTATCAC+TGG - chr1_2:3075692-3075711 Msa0049670:intron 55.0%
! AATTGGCTCAGTTGCGCGCT+GGG - chr1_2:3075783-3075802 Msa0049670:intron 55.0%
! GAGGGCTTGGTTCTCTCTGT+TGG - chr1_2:3076237-3076256 Msa0049670:intron 55.0%
! GGCTTGGTTCTCTCTGTTGG+CGG - chr1_2:3076240-3076259 Msa0049670:intron 55.0%
GTTCTCTCTGTTGGCGGCAA+TGG - chr1_2:3076246-3076265 Msa0049670:intron 55.0%
!! CTCTGACTTGGATCCCCTGA+AGG + chr1_2:3076303-3076322 None:intergenic 55.0%
!! GGGGGGAAGGGGTATTATGT+AGG + chr1_2:3076988-3077007 None:intergenic 55.0%
TGGACGTAATGGTCCACTGG+AGG + chr1_2:3077043-3077062 None:intergenic 55.0%
AGAAAAAAAGAGGGGGGGGG+GGG + chr1_2:3077258-3077277 None:intergenic 55.0%
CAGAAAAAAAGAGGGGGGGG+GGG + chr1_2:3077259-3077278 None:intergenic 55.0%
GCAGAAAAAAAGAGGGGGGG+GGG + chr1_2:3077260-3077279 None:intergenic 55.0%
CGCAGAAAAAAAGAGGGGGG+GGG + chr1_2:3077261-3077280 None:intergenic 55.0%
GCGCAGAAAAAAAGAGGGGG+GGG + chr1_2:3077262-3077281 None:intergenic 55.0%
! GCCTTGGTATTGAGCCTTCC+AGG - chr1_2:3078403-3078422 Msa0049670:intron 55.0%
GCCTGGAAGGCTCAATACCA+AGG + chr1_2:3078407-3078426 None:intergenic 55.0%
! TGGTATTGAGCCTTCCAGGC+GGG - chr1_2:3078407-3078426 Msa0049670:intron 55.0%
GGGTATATGGAGGGGAAGGA+AGG + chr1_2:3078874-3078893 None:intergenic 55.0%
ACCAAATACTCCCTCCGTCC+CGG - chr1_2:3078897-3078916 Msa0049670:intron 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr1_2:3078910-3078929 None:intergenic 55.0%
CTGGCTCAGATATACCGGGA+CGG - chr1_2:3079106-3079125 Msa0049670:intron 55.0%
CTCAGATATACCGGGACGGA+GGG - chr1_2:3079110-3079129 Msa0049670:intron 55.0%
ACATAGTACTCCCTCCGTCC+CGG + chr1_2:3079123-3079142 None:intergenic 55.0%
TGCTGACAGGAAGAACCTGG+TGG - chr1_2:3079196-3079215 Msa0049670:CDS 55.0%
GCTGACAGGAAGAACCTGGT+GGG - chr1_2:3079197-3079216 Msa0049670:CDS 55.0%
! GGGCATCAGTTGTGCTGATG+TGG - chr1_2:3079454-3079473 Msa0049670:CDS 55.0%
GACACCAGCTCTCTCTGTCT+TGG - chr1_2:3079776-3079795 Msa0049670:intron 55.0%
ATACCTGAACATCCCTGGCC+TGG - chr1_2:3079805-3079824 Msa0049670:intron 55.0%
GAGGTATGTTCTCCAGGCCA+GGG + chr1_2:3079820-3079839 None:intergenic 55.0%
TAGCCGCTGCTCCAAACACC+AGG - chr1_2:3074834-3074853 Msa0049670:intron 60.0%
AGCCGCTGCTCCAAACACCA+GGG - chr1_2:3074835-3074854 Msa0049670:intron 60.0%
GCTGCTCCAAACACCAGGGA+TGG - chr1_2:3074839-3074858 Msa0049670:intron 60.0%
TCTCGACGACGTCAACCCTG+TGG - chr1_2:3074931-3074950 Msa0049670:intron 60.0%
CTCGACGACGTCAACCCTGT+GGG - chr1_2:3074932-3074951 Msa0049670:intron 60.0%
GACGTCAACCCTGTGGGACT+TGG - chr1_2:3074938-3074957 Msa0049670:intron 60.0%
! CAATTGGCTCAGTTGCGCGC+TGG - chr1_2:3075782-3075801 Msa0049670:intron 60.0%
CTAATGGAGCCACTGCCTCG+AGG + chr1_2:3076835-3076854 None:intergenic 60.0%
AAAAAAAGAGGGGGGGGGGG+GGG + chr1_2:3077256-3077275 None:intergenic 60.0%
GAAAAAAAGAGGGGGGGGGG+GGG + chr1_2:3077257-3077276 None:intergenic 60.0%
! AGAACTTGCTCCCGCCTGGA+AGG + chr1_2:3078420-3078439 None:intergenic 60.0%
AGTTCGTCCGGGTCCATTGC+AGG - chr1_2:3078605-3078624 Msa0049670:intron 60.0%
!! TCCGGGACGGAGGGAGTATT+TGG + chr1_2:3078901-3078920 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr1_2:3078911-3078930 None:intergenic 60.0%
GCTCAGATATACCGGGACGG+AGG - chr1_2:3079109-3079128 Msa0049670:intron 60.0%
ATTAGAGCACGCTGCCCACC+AGG + chr1_2:3079214-3079233 None:intergenic 60.0%
TCTCCAGGCCAGGGATGTTC+AGG + chr1_2:3079811-3079830 None:intergenic 60.0%
! GGAGGTATGTTCTCCAGGCC+AGG + chr1_2:3079821-3079840 None:intergenic 60.0%
TGAGCCGGAAGGATAGGGGA+TGG - chr1_2:3080139-3080158 Msa0049670:CDS 60.0%
AAAAAAGAGGGGGGGGGGGG+GGG + chr1_2:3077255-3077274 None:intergenic 65.0%
AAAAAGAGGGGGGGGGGGGG+GGG + chr1_2:3077254-3077273 None:intergenic 70.0%
AAAAGAGGGGGGGGGGGGGG+GGG + chr1_2:3077253-3077272 None:intergenic 75.0%
! AAAGAGGGGGGGGGGGGGGG+GGG + chr1_2:3077252-3077271 None:intergenic 80.0%
! AAGAGGGGGGGGGGGGGGGG+GGG + chr1_2:3077251-3077270 None:intergenic 85.0%
! AGAGGGGGGGGGGGGGGGGG+GGG + chr1_2:3077250-3077269 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG + chr1_2:3077248-3077267 None:intergenic 95.0%
! GAGGGGGGGGGGGGGGGGGG+GGG + chr1_2:3077249-3077268 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 3074402 3080718 3074402 ID=Msa0049670;Name=Msa0049670
chr1_2 mRNA 3074402 3080718 3074402 ID=Msa0049670-mRNA-1;Parent=Msa0049670;Name=Msa0049670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=260|1|1|1|0.91|0.84|13|232|588
chr1_2 exon 3074402 3074600 3074402 ID=Msa0049670-mRNA-1:exon:722;Parent=Msa0049670-mRNA-1
chr1_2 exon 3075275 3075379 3075275 ID=Msa0049670-mRNA-1:exon:721;Parent=Msa0049670-mRNA-1
chr1_2 exon 3075463 3075510 3075463 ID=Msa0049670-mRNA-1:exon:720;Parent=Msa0049670-mRNA-1
chr1_2 exon 3075588 3075665 3075588 ID=Msa0049670-mRNA-1:exon:719;Parent=Msa0049670-mRNA-1
chr1_2 exon 3075859 3075915 3075859 ID=Msa0049670-mRNA-1:exon:718;Parent=Msa0049670-mRNA-1
chr1_2 exon 3076494 3076559 3076494 ID=Msa0049670-mRNA-1:exon:717;Parent=Msa0049670-mRNA-1
chr1_2 exon 3076668 3076757 3076668 ID=Msa0049670-mRNA-1:exon:716;Parent=Msa0049670-mRNA-1
chr1_2 exon 3077679 3077759 3077679 ID=Msa0049670-mRNA-1:exon:715;Parent=Msa0049670-mRNA-1
chr1_2 exon 3078507 3078611 3078507 ID=Msa0049670-mRNA-1:exon:714;Parent=Msa0049670-mRNA-1
chr1_2 exon 3078752 3078887 3078752 ID=Msa0049670-mRNA-1:exon:713;Parent=Msa0049670-mRNA-1
chr1_2 exon 3078972 3079047 3078972 ID=Msa0049670-mRNA-1:exon:712;Parent=Msa0049670-mRNA-1
chr1_2 exon 3079146 3079563 3079146 ID=Msa0049670-mRNA-1:exon:711;Parent=Msa0049670-mRNA-1
chr1_2 exon 3079919 3080718 3079919 ID=Msa0049670-mRNA-1:exon:710;Parent=Msa0049670-mRNA-1
chr1_2 five_prime_UTR 3080459 3080718 3080459 ID=Msa0049670-mRNA-1:five_prime_utr;Parent=Msa0049670-mRNA-1
chr1_2 CDS 3079919 3080458 3079919 ID=Msa0049670-mRNA-1:cds;Parent=Msa0049670-mRNA-1
chr1_2 CDS 3079146 3079563 3079146 ID=Msa0049670-mRNA-1:cds;Parent=Msa0049670-mRNA-1
chr1_2 CDS 3078972 3079047 3078972 ID=Msa0049670-mRNA-1:cds;Parent=Msa0049670-mRNA-1
chr1_2 CDS 3078752 3078887 3078752 ID=Msa0049670-mRNA-1:cds;Parent=Msa0049670-mRNA-1
chr1_2 CDS 3078507 3078611 3078507 ID=Msa0049670-mRNA-1:cds;Parent=Msa0049670-mRNA-1
chr1_2 CDS 3077679 3077759 3077679 ID=Msa0049670-mRNA-1:cds;Parent=Msa0049670-mRNA-1
chr1_2 CDS 3076668 3076757 3076668 ID=Msa0049670-mRNA-1:cds;Parent=Msa0049670-mRNA-1
chr1_2 CDS 3076494 3076559 3076494 ID=Msa0049670-mRNA-1:cds;Parent=Msa0049670-mRNA-1
chr1_2 CDS 3075859 3075915 3075859 ID=Msa0049670-mRNA-1:cds;Parent=Msa0049670-mRNA-1
chr1_2 CDS 3075588 3075665 3075588 ID=Msa0049670-mRNA-1:cds;Parent=Msa0049670-mRNA-1
chr1_2 CDS 3075463 3075510 3075463 ID=Msa0049670-mRNA-1:cds;Parent=Msa0049670-mRNA-1
chr1_2 CDS 3075308 3075379 3075308 ID=Msa0049670-mRNA-1:cds;Parent=Msa0049670-mRNA-1
chr1_2 three_prime_UTR 3075275 3075307 3075275 ID=Msa0049670-mRNA-1:three_prime_utr;Parent=Msa0049670-mRNA-1
chr1_2 three_prime_UTR 3074402 3074600 3074402 ID=Msa0049670-mRNA-1:three_prime_utr;Parent=Msa0049670-mRNA-1
Gene Sequence

>Msa0049670

ATGAGTACCTCACCTTCAGCAACAACAATTGCTGCTGCTGCTGTGTACTCAAAGTATCATAATATTAATACAACACTTTCACTTTCAGGAGCCTCCTCACAAATCAACACTACTTTCCTCTCATACACCAAAAAGCAGCATACCCGCTCCTCTGTACAACGACTGCCTCCTATAGCCGCTGCTCCAAACACCAGGGATGGCAAAGACAGCAAGAACAACACCCAAAACGACGACGACAACAACGATGACAAACAATCTGTTTCTCTTAGTCTCGACGACGTCAACCCTGTGGGACTTGGTCGAAGATCGCGGCAGATATTCGATGAGGTTTGGAGAAAATTCTCTGGACTGGGTCAGATCTCTAGGACTATACGTACTGATGATGTGGAGGCACTAGATGCTCTTCTTGTTCGTGAAGGTCCTATGTGTGAGTTTGCCATCCCTGGTGCTCAGAATACTACTGTACTTGTTGTTGGTGCTACTAGCCGTATAGGTCGAATTGTTGTCCGTAAACTCATGCTCAGGGGTTACTCTGTCAAGGCTTTGGTAAGGAAGGCAGATGAAGAGGTGGTAGAGCTGCTTCCAAGGTCAGTAGAGATAGTGATTGGGGATGTTGGTGATCCAAACACAGTCAAGGCTGCTGTAGAAGGCTGCAATAAAATCATATATTGTGCCACTGCCCGCTCAACTATCACTGGTGATCTCTTCAGGGTTGATCAGCAAGGAGTTTATAATCTATCTAAAGCATTTCAGGATCACAACAATCAATTGGCTCAGTTGCGCGCTGGGAAAAGCAGCAAAAGTAAGCTTACAATTGCTAAATTTAAATCTGAATCTTCACTGGATGGATGGGAAGTTCGTCAAGGAACTTACTTCGAAGATGTAGTTACCTCAAAATATGATGGAGGGATGGATGCCAAATTTGAGTTCACTGAGAATGGAGCTGCTGTTTTCTCAGGGTATGTCTTCAATAGAGGTGGCTATGTAGAACTGTCAAAAAAGCTTTCTCTACCTTTGGGTAGTACTCTTGACAGGTATGAGGGCTTGGTTCTCTCTGTTGGCGGCAATGGAAGACCTTATGTATTAATTCTAGAAGCTGGTCCTTCAGGGGATCCAAGTCAGAGTAAATTGTATTTTGCAAGAATTAGTACAAAAGTGGGATTTTGTAGGGTTAGAGTGCCATTTTCATCATTTCGTCCGGTGAAACCAGATCATCCAGTTTTAGACCCTTTTCTTGTACATACATTAACAATACGGTTTGAGCCTAGAAGACAGAGGTCTGATATAGTAAATGCGTCAAAGAACCAGGATTCGAGAAGCTTTCAGCTAATATTGGAATATATAAAAGCCTTGCCTACTGGACAAGAAACCGATTTTGTCTTAGTTTCATGTTCTGGCCTTGGTATTGAGCCTTCCAGGCGGGAGCAAGTTCTTAAAGCCAAGAGGGCAGGTGAAGATTCCTTGAGAAGATCTGGGCTTGGATACACAATAGTTCGTCCGGGTCCATTGCAGGAAGAACCTGGTGGGCAGCGTGCTCTAATATTTGATCAAGGAGACAGAATATCTCGGGGCATCAGTTGTGCTGATGTGGCCGATATATGTGTGAAGGCACTCCATGATTCAACTGCAAGAAACAAAAGCTTTGATGTATGTTACGAGTACGTTGCTGAGGATGGGAATGAGCTTTATGAGCTGGTTGCCCACTTGCCGGACAAAGCAAATAACTATCTGACACCAGCTCTCTCTGTCTTGGAGAAGAATACCTGA

Protein sequence

>Msa0049670

MSTSPSATTIAAAAVYSKYHNINTTLSLSGASSQINTTFLSYTKKQHTRSSVQRLPPIAAAPNTRDGKDSKNNTQNDDDNNDDKQSVSLSLDDVNPVGLGRRSRQIFDEVWRKFSGLGQISRTIRTDDVEALDALLVREGPMCEFAIPGAQNTTVLVVGATSRIGRIVVRKLMLRGYSVKALVRKADEEVVELLPRSVEIVIGDVGDPNTVKAAVEGCNKIIYCATARSTITGDLFRVDQQGVYNLSKAFQDHNNQLAQLRAGKSSKSKLTIAKFKSESSLDGWEVRQGTYFEDVVTSKYDGGMDAKFEFTENGAAVFSGYVFNRGGYVELSKKLSLPLGSTLDRYEGLVLSVGGNGRPYVLILEAGPSGDPSQSKLYFARISTKVGFCRVRVPFSSFRPVKPDHPVLDPFLVHTLTIRFEPRRQRSDIVNASKNQDSRSFQLILEYIKALPTGQETDFVLVSCSGLGIEPSRREQVLKAKRAGEDSLRRSGLGYTIVRPGPLQEEPGGQRALIFDQGDRISRGISCADVADICVKALHDSTARNKSFDVCYEYVAEDGNELYELVAHLPDKANNYLTPALSVLEKNT*