AlfalfaGEDB | Msa1071460

M. sativa cultivar zhongmu-4 / Msa1071460

KEGG: K00951
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008728 GO:0008893 GO:0009116 GO:0009117 GO:0009119 GO:0009150 GO:0009259 GO:0009605 GO:0009987 GO:0009991 GO:0015969 GO:0016020 GO:0016740 GO:0016772 GO:0016778 GO:0016787 GO:0016788 GO:0016794 GO:0019637 GO:0019693 GO:0030312 GO:0031667 GO:0033865 GO:0033875 GO:0034032 GO:0034035 GO:0034641 GO:0042278 GO:0042578 GO:0042594 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046128 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:1901068 GO:1901135 GO:1901360 GO:1901564 GO:1901657
PFAM: PF13328.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071460	XP_003610865.1	95.163	889	15	1	1	861	1	889	0.0	1721

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071460	sp\|Q9SYH1\|RSH3C_ARATH	47.761	201	93	3	121	321	207	395	1.82e-40	163
Msa1071460	sp\|Q9SYH1\|RSH3C_ARATH	42.857	161	75	3	413	573	404	547	4.40e-28	124

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071460	G7K6I5	95.163	889	15	1	1	861	1	889	0.0	1721

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1071460	0.813491	2.491449e-51	-8.615850e-47
Msa0000310	Msa1071460	0.816895	4.367775e-52	-8.615850e-47
Msa0000610	Msa1071460	0.801457	8.924916e-49	-8.615850e-47
Msa0001040	Msa1071460	0.802006	6.885145e-49	-8.615850e-47
Msa0003340	Msa1071460	0.818113	2.321979e-52	-8.615850e-47
Msa0005630	Msa1071460	0.812275	4.600661e-51	-8.615850e-47
Msa0005690	Msa1071460	0.814943	1.190544e-51	-8.615850e-47
Msa0008700	Msa1071460	0.805213	1.488109e-49	-8.615850e-47
Msa0009800	Msa1071460	0.803012	4.270480e-49	-8.615850e-47
Msa0011060	Msa1071460	0.808140	3.584225e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071460	MtrunA17_Chr5g0395711	95.163	889	15	1	1	861	1	889	0.0	1721
Msa1071460	MtrunA17_Chr8g0344131	44.498	209	104	3	121	329	215	411	1.72e-38	153
Msa1071460	MtrunA17_Chr8g0344131	48.819	127	56	2	446	572	437	554	6.22e-28	120
Msa1071460	MtrunA17_Chr7g0269591	37.500	224	128	5	108	329	126	339	1.10e-34	142
Msa1071460	MtrunA17_Chr7g0269591	36.364	121	71	2	451	565	377	497	1.35e-15	81.6
Msa1071460	MtrunA17_Chr4g0069291	35.659	129	74	3	443	564	307	433	7.35e-13	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071460	AT1G54130.1	47.761	201	93	3	121	321	207	395	1.85e-41	163
Msa1071460	AT1G54130.1	42.857	161	75	3	413	573	404	547	4.47e-29	124
Msa1071460	AT3G14050.1	46.766	201	95	3	121	321	203	391	8.62e-40	158
Msa1071460	AT3G14050.1	50.781	128	54	2	446	573	425	543	4.76e-30	127
Msa1071460	AT4G02260.3	36.239	218	127	4	129	344	150	357	9.20e-35	143
Msa1071460	AT4G02260.3	41.667	120	64	2	448	561	376	495	7.77e-16	82.8
Msa1071460	AT4G02260.4	36.239	218	127	4	129	344	150	357	1.47e-34	142
Msa1071460	AT4G02260.4	41.667	120	64	2	448	561	376	495	5.61e-16	83.2
Msa1071460	AT4G02260.2	36.239	218	127	4	129	344	150	357	1.72e-34	142
Msa1071460	AT4G02260.2	41.667	120	64	2	448	561	376	495	5.92e-16	83.2

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Find 219 sgRNAs with CRISPR-Local

Find 889 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGGGTTTGGATTCT+TGG	0.223822	7_2:-67985014	Msa1071460:three_prime_UTR
AAAATTGAGTGGTTGGAAAA+TGG	0.303632	7_2:+67997842	None:intergenic
AAACGGAATCTGCGAAGAAG+TGG	0.523820	7_2:+67997695	None:intergenic
AAATCCTTGGCATTCAATGA+GGG	0.609329	7_2:-67991381	Msa1071460:CDS
AACAGCAACATGATTAATAG+CGG	0.640532	7_2:+67997544	None:intergenic
AACATGGGCTGGCCGCACAT+TGG	0.455297	7_2:-67987979	Msa1071460:CDS
AACCTCATAATTTCACCATT+AGG	0.393428	7_2:+67985267	None:intergenic
AACCTGATAGCCACTAGGCT+TGG	0.450431	7_2:+67988275	None:intergenic
AACGGCACCGTGGACGGAAG+CGG	0.500716	7_2:+67997571	None:intergenic
AACTGGTTTGGAGGGAAAAC+TGG	0.315287	7_2:-67985208	Msa1071460:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGTGAGAAAAATGAGAA+AGG	+	chr7_2:67984921-67984940	None:intergenic	30.0%
AAAATTGAGTGGTTGGAAAA+TGG	+	chr7_2:67984952-67984971	None:intergenic	30.0%
AACAGCAACATGATTAATAG+CGG	+	chr7_2:67985250-67985269	None:intergenic	30.0%
TCACAAGAAAAGAAAGAATC+AGG	+	chr7_2:67985359-67985378	None:intergenic	30.0%
TGATTCTGTTACTACATGAT+AGG	-	chr7_2:67985751-67985770	Msa1071460:intron	30.0%
TAATGTTAATCGTCGTAACT+AGG	-	chr7_2:67985811-67985830	Msa1071460:intron	30.0%
TTTATTTAGACTCTCGAGTT+GGG	-	chr7_2:67985967-67985986	Msa1071460:intron	30.0%
TCATTCATAATGAAACCTCT+TGG	-	chr7_2:67986288-67986307	Msa1071460:intron	30.0%
CATTCATAATGAAACCTCTT+GGG	-	chr7_2:67986289-67986308	Msa1071460:intron	30.0%
TCCTATATTTACTGATGCAA+AGG	-	chr7_2:67986420-67986439	Msa1071460:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	67984895	67997918	67984895	ID=Msa1071460;Name=Msa1071460
chr7_2	mRNA	67984895	67997918	67984895	ID=Msa1071460-mRNA-1;Parent=Msa1071460;Name=Msa1071460-mRNA-1;_AED=0.10;_eAED=0.10;_QI=129\|0.88\|0.94\|0.94\|0.94\|0.94\|18\|239\|861
chr7_2	exon	67984895	67985427	67984895	ID=Msa1071460-mRNA-1:exon:14856;Parent=Msa1071460-mRNA-1
chr7_2	exon	67985972	67986157	67985972	ID=Msa1071460-mRNA-1:exon:14855;Parent=Msa1071460-mRNA-1
chr7_2	exon	67986394	67986402	67986394	ID=Msa1071460-mRNA-1:exon:14854;Parent=Msa1071460-mRNA-1
chr7_2	exon	67987482	67987611	67987482	ID=Msa1071460-mRNA-1:exon:14853;Parent=Msa1071460-mRNA-1
chr7_2	exon	67987695	67988020	67987695	ID=Msa1071460-mRNA-1:exon:14852;Parent=Msa1071460-mRNA-1
chr7_2	exon	67988104	67988166	67988104	ID=Msa1071460-mRNA-1:exon:14851;Parent=Msa1071460-mRNA-1
chr7_2	exon	67988278	67988344	67988278	ID=Msa1071460-mRNA-1:exon:14850;Parent=Msa1071460-mRNA-1
chr7_2	exon	67988733	67988866	67988733	ID=Msa1071460-mRNA-1:exon:14849;Parent=Msa1071460-mRNA-1
chr7_2	exon	67989594	67989660	67989594	ID=Msa1071460-mRNA-1:exon:14848;Parent=Msa1071460-mRNA-1
chr7_2	exon	67989835	67990025	67989835	ID=Msa1071460-mRNA-1:exon:14847;Parent=Msa1071460-mRNA-1
chr7_2	exon	67991365	67991541	67991365	ID=Msa1071460-mRNA-1:exon:14846;Parent=Msa1071460-mRNA-1
chr7_2	exon	67992666	67992798	67992666	ID=Msa1071460-mRNA-1:exon:14845;Parent=Msa1071460-mRNA-1
chr7_2	exon	67993109	67993203	67993109	ID=Msa1071460-mRNA-1:exon:14844;Parent=Msa1071460-mRNA-1
chr7_2	exon	67993801	67993857	67993801	ID=Msa1071460-mRNA-1:exon:14843;Parent=Msa1071460-mRNA-1
chr7_2	exon	67994779	67994919	67994779	ID=Msa1071460-mRNA-1:exon:14842;Parent=Msa1071460-mRNA-1
chr7_2	exon	67996159	67996290	67996159	ID=Msa1071460-mRNA-1:exon:14841;Parent=Msa1071460-mRNA-1
chr7_2	exon	67996372	67996430	67996372	ID=Msa1071460-mRNA-1:exon:14840;Parent=Msa1071460-mRNA-1
chr7_2	exon	67997465	67997918	67997465	ID=Msa1071460-mRNA-1:exon:14839;Parent=Msa1071460-mRNA-1
chr7_2	five_prime_UTR	67997790	67997918	67997790	ID=Msa1071460-mRNA-1:five_prime_utr;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67997465	67997789	67997465	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67996372	67996430	67996372	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67996159	67996290	67996159	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67994779	67994919	67994779	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67993801	67993857	67993801	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67993109	67993203	67993109	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67992666	67992798	67992666	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67991365	67991541	67991365	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67989835	67990025	67989835	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67989594	67989660	67989594	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67988733	67988866	67988733	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67988278	67988344	67988278	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67988104	67988166	67988104	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67987695	67988020	67987695	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67987482	67987611	67987482	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67986394	67986402	67986394	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67985972	67986157	67985972	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	CDS	67985134	67985427	67985134	ID=Msa1071460-mRNA-1:cds;Parent=Msa1071460-mRNA-1
chr7_2	three_prime_UTR	67984895	67985133	67984895	ID=Msa1071460-mRNA-1:three_prime_utr;Parent=Msa1071460-mRNA-1

Gene Sequence

>Msa1071460

ATGAGAATCACCATGAACACTCACTTTCTCTCATGCGAACGTTCTACAATGTTACTTCATCAAAATTCATCTCCACTTCTTCGCAGATTCCGTTTCCGTTACGTCAAATTCAAACCTCACCGTTCACTATTCCGATGCTTGCTTCCTCAAATCGCGGTTCAATCTTCCGCCAATGTAATCGCCGCCGCTGCTAAAGCCGCTTCCGTCCACGGTGCCGTTTATTCCGCTATTAATCATGTTGCTGTTACTGCTGTTGCTATTGCTTCCGGTGCTTGTCTTTCTACTAAGGTTGATTTCTTGTGGCCGAAACCTGACGAACAACCAGGTACCATTATGCAGGATGGAGTAGATGTTACTGGCTATCCTATATTTACTGATGCAAAGGTACAGAAGGCTATAGCTTTTGCAAGGAAGGCACACCTTGGCCAAATGCGGAAATCTGGCGATCCTTATTTAGCACATTGTATTCATACAGGGAGAATTTTGGCTGCATTGGTTCCATCAAGTGGTAAACGAGCTGTTGAAACAATTGTGGCTGGTATTTTGCATGACGTGGTTGACGACACCTGCCAAAGTTTACAGGACATCGAGGCAGAGTTTGGGGATGATGTGGCCGAGTTGGTAGCCGGTGTTTCTAGGTTGAGTTATATTAATCAGCTGTTACGCAGACATCGAAGGGTAAATGTGAACCAGGGTGTCCTTGGCCAAGAAGAGGCAAGTAATTTACGAGTCATGCTTTTGGGAATGATTGATGACCCGCGTGTTGTCCTCATCAAGCTTGCTGATCGTCTTCACAACATGAGAACAATTTATGCTCTGCCAATGCATAAGGCTCAAGCTGTTGCAGAGGAGACATTAATTATTTGGTGTTCACTTGCTTCGAGATTGGGTCTGTGGGCATTGAAAGCTGAACTTGAAGATCTATGCTTTGCTGTTCTGCAGCCTCAAATATTTCAAAGCATGAGAGCTGATCTGGCTTCCATGTGGAGCCCTTCGGCCAGAATAGGAAGCTCAGGAAGATTATATGTGAAAGGCAACTTGATACCTTTGGCTGAGAAAAGTTCAACTTCTTTTTACAACAAATCCTTGGCATTCAATGAGGGTCTCTGCAGTATGAAGGATCTGTTGGAAGCTGTAGTCCCATTTGATGTATTATTGGATCGGAGAAAGCGGGCTAACTTTCTCTATAGTATTGCTAATAATGTGGAGACATGCACGAAACCGAAGGTTGTTCAGGATGCTGGGTTAGCTTTGGCATCGTTGGTAATTTGTGAGGAAGCACTTGAGCGAGAATTGATTATATCGGCTTCTTATGTTCCAGGAATGGAGGTTACATTATCAAGCCGACTAAAAAGCCTGTATAGCATATACAGTAAGATGAAACGAAAGGATACAAGCATTGATAAAGTATATGATGCACGTGCATTAAGAGTAGTTGTAGGAGACAAAAATGGAACTTTACATGGACCTGCAGTTCAGTGTTGCTATAGTCTTCTTGACATTGTACACAGACTTTGGACACCGATAGATGGTGAATTTGATGACTACATCCTTAATCCCAAGCCTAGTGGCTATCAGTCCTTGCACACTGCAGTTGAAGGTCCTGACAACTCACCTTTAGAAGTACAAATAAGAACACAGAGGATGCATGAGTATGCTGAACATGGGCTGGCCGCACATTGGCTTTATAAGGAAACCGGAAATCCTTTTTCATCCATAGACAGAATGGATACACCTGAAACAGATGCATCCTCATCCATAGACAGAATGGATGCACCTGAAACAGAAGCATCCTCGTCTATAGACAGAATGGATACACCTGAAACAGAAGCATCCTCCTATTTTTCCAAAGACACAGAAGAGGAAAATTCTTCAGATATTTTACTGAGCAAGAATAAGTCATTGAAGGCTGGACACCCAGTCCTTAGAGTAGAAGGAAGTCACCTACTTGCTGCTGTTATCATCAGTGTAGAAAATGAAGCAAGAGAATTGCTAGTTGCTGTAAGCTTTCAGCTAGCAGCTTCTGATGCAGTAGCTGATAGAAGATCATTTTTCCAGGATAAGCGATGGGAAGCTTATGCACGGCTATACAAAAAGATTAATGGTCAAGACCAATTTGGGCGCCTTCTACCAACATTCGTCCAGGTTATCAATTTTACCGAGCAAGAAGAATCTGAATATTGGGACGTTGTATCTGCCGTGTTCGAGGGCAAGCAAGTGGATTGTATTGCATCGCAATCAAAATTAGACTTGGTTCCGTCAACTTCTATGGATGCTAGCATCAATAATAAGGTGCATCTTTTGAGAACAATGCTGTCCTGGGAAGAGCAATTGCGTTCTGAAGCAAATATCAACCAAACAAAGCACGACGCAAAGTTTGATGGTCCACGTGGTCCTCTTAACCTTGGAGAAGTGGTAGTTATATGTTGGCCTAATGGTGAAATTATGAGGTTAAAAGCTGGTAGCAGTGCTGTTGATGCTGCACAAAGAACTGGTTTGGAGGGAAAACTGGTTTTGATCAACGGACATTTAGCATTGCCTAATACAAAACTCAAAGATGGCGATGTTCTTGAAGTAAGAATCTAA

Protein sequence

>Msa1071460

MRITMNTHFLSCERSTMLLHQNSSPLLRRFRFRYVKFKPHRSLFRCLLPQIAVQSSANVIAAAAKAASVHGAVYSAINHVAVTAVAIASGACLSTKVDFLWPKPDEQPGTIMQDGVDVTGYPIFTDAKVQKAIAFARKAHLGQMRKSGDPYLAHCIHTGRILAALVPSSGKRAVETIVAGILHDVVDDTCQSLQDIEAEFGDDVAELVAGVSRLSYINQLLRRHRRVNVNQGVLGQEEASNLRVMLLGMIDDPRVVLIKLADRLHNMRTIYALPMHKAQAVAEETLIIWCSLASRLGLWALKAELEDLCFAVLQPQIFQSMRADLASMWSPSARIGSSGRLYVKGNLIPLAEKSSTSFYNKSLAFNEGLCSMKDLLEAVVPFDVLLDRRKRANFLYSIANNVETCTKPKVVQDAGLALASLVICEEALERELIISASYVPGMEVTLSSRLKSLYSIYSKMKRKDTSIDKVYDARALRVVVGDKNGTLHGPAVQCCYSLLDIVHRLWTPIDGEFDDYILNPKPSGYQSLHTAVEGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKETGNPFSSIDRMDTPETDASSSIDRMDAPETEASSSIDRMDTPETEASSYFSKDTEEENSSDILLSKNKSLKAGHPVLRVEGSHLLAAVIISVENEARELLVAVSFQLAASDAVADRRSFFQDKRWEAYARLYKKINGQDQFGRLLPTFVQVINFTEQEESEYWDVVSAVFEGKQVDCIASQSKLDLVPSTSMDASINNKVHLLRTMLSWEEQLRSEANINQTKHDAKFDGPRGPLNLGEVVVICWPNGEIMRLKAGSSAVDAAQRTGLEGKLVLINGHLALPNTKLKDGDVLEVRI*