Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0332760 | XP_024632249.1 | 92.922 | 438 | 29 | 1 | 1 | 438 | 1 | 436 | 0.0 | 847 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0332760 | sp|Q9ZVA4|EP1L3_ARATH | 48.174 | 438 | 205 | 7 | 12 | 437 | 7 | 434 | 1.48e-140 | 412 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0037180 | Msa0332760 | 0.805822 | 1.108661e-49 | -8.615850e-47 |
Msa0173950 | Msa0332760 | -0.800382 | 1.479255e-48 | -8.615850e-47 |
Msa0177320 | Msa0332760 | 0.806967 | 6.359001e-50 | -8.615850e-47 |
Msa0216150 | Msa0332760 | -0.806833 | 6.790190e-50 | -8.615850e-47 |
Msa0294200 | Msa0332760 | 0.833940 | 3.995097e-56 | -8.615850e-47 |
Msa0332760 | Msa0332780 | 0.800015 | 1.757299e-48 | -8.615850e-47 |
Msa0332760 | Msa0334450 | -0.812767 | 3.592444e-51 | -8.615850e-47 |
Msa0332760 | Msa0805390 | 0.822964 | 1.787352e-53 | -8.615850e-47 |
Msa0332760 | Msa0969380 | 0.813161 | 2.943705e-51 | -8.615850e-47 |
Msa0332760 | Msa0969720 | 0.811583 | 6.510760e-51 | -8.615850e-47 |
Msa0332760 | Msa0971780 | -0.801377 | 9.265485e-49 | -8.615850e-47 |
Msa0332760 | Msa0975960 | 0.809877 | 1.522573e-50 | -8.615850e-47 |
Msa0332760 | Msa1156120 | -0.811058 | 8.463200e-51 | -8.615850e-47 |
Msa0332760 | Msa1356100 | -0.800656 | 1.300756e-48 | -8.615850e-47 |
Msa0332760 | Msa1414780 | -0.801121 | 1.045330e-48 | -8.615850e-47 |
Msa0332760 | Msa1453430 | 0.840253 | 9.717066e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0332760 | MtrunA17_Chr2g0315841 | 92.922 | 438 | 29 | 1 | 1 | 438 | 1 | 436 | 0.0 | 847 |
Msa0332760 | MtrunA17_Chr2g0315851 | 92.466 | 438 | 33 | 0 | 1 | 438 | 1 | 438 | 0.0 | 821 |
Msa0332760 | MtrunA17_Chr2g0315871 | 69.318 | 264 | 61 | 4 | 33 | 294 | 2 | 247 | 6.83e-122 | 355 |
Msa0332760 | MtrunA17_Chr2g0315861 | 83.041 | 171 | 26 | 2 | 217 | 387 | 2 | 169 | 4.70e-98 | 291 |
Msa0332760 | MtrunA17_Chr1g0149381 | 27.792 | 385 | 231 | 14 | 63 | 435 | 65 | 414 | 3.12e-24 | 105 |
Msa0332760 | MtrunA17_Chr7g0244431 | 27.003 | 337 | 207 | 12 | 108 | 436 | 99 | 404 | 5.67e-22 | 97.8 |
Msa0332760 | MtrunA17_Chr7g0257821 | 28.378 | 370 | 212 | 19 | 60 | 412 | 48 | 381 | 1.00e-21 | 98.2 |
Msa0332760 | MtrunA17_Chr3g0106121 | 28.177 | 362 | 219 | 13 | 63 | 406 | 42 | 380 | 1.18e-20 | 95.1 |
Msa0332760 | MtrunA17_Chr3g0137741 | 23.958 | 384 | 242 | 11 | 63 | 433 | 60 | 406 | 1.92e-20 | 94.4 |
Msa0332760 | MtrunA17_Chr4g0023071 | 26.790 | 433 | 228 | 24 | 51 | 435 | 38 | 429 | 8.94e-20 | 92.4 |
Msa0332760 | MtrunA17_Chr7g0237331 | 27.456 | 397 | 243 | 14 | 60 | 436 | 48 | 419 | 9.23e-20 | 92.0 |
Msa0332760 | MtrunA17_Chr2g0323301 | 28.198 | 383 | 203 | 19 | 93 | 435 | 77 | 427 | 1.54e-19 | 91.7 |
Msa0332760 | MtrunA17_Chr3g0106131 | 26.276 | 392 | 254 | 14 | 63 | 438 | 42 | 414 | 2.14e-19 | 91.3 |
Msa0332760 | MtrunA17_Chr3g0106151 | 26.366 | 421 | 261 | 19 | 34 | 436 | 18 | 407 | 3.26e-19 | 90.5 |
Msa0332760 | MtrunA17_Chr3g0134291 | 28.022 | 364 | 217 | 19 | 60 | 402 | 45 | 384 | 4.24e-19 | 90.1 |
Msa0332760 | MtrunA17_Chr0c04g0492001 | 28.022 | 364 | 217 | 19 | 60 | 402 | 45 | 384 | 6.13e-19 | 89.7 |
Msa0332760 | MtrunA17_Chr2g0333091 | 25.000 | 384 | 253 | 12 | 60 | 435 | 55 | 411 | 6.25e-19 | 89.7 |
Msa0332760 | MtrunA17_Chr3g0134321 | 42.553 | 141 | 76 | 4 | 60 | 198 | 42 | 179 | 6.29e-19 | 89.4 |
Msa0332760 | MtrunA17_Chr0c04g0492031 | 28.022 | 364 | 217 | 19 | 60 | 402 | 45 | 384 | 7.20e-19 | 89.4 |
Msa0332760 | MtrunA17_Chr3g0106211 | 26.392 | 413 | 244 | 17 | 15 | 405 | 9 | 383 | 1.30e-18 | 88.6 |
Msa0332760 | MtrunA17_Chr3g0106141 | 26.281 | 449 | 270 | 18 | 14 | 438 | 5 | 416 | 5.99e-18 | 86.7 |
Msa0332760 | MtrunA17_Chr2g0280681 | 28.142 | 366 | 209 | 19 | 63 | 403 | 50 | 386 | 2.57e-17 | 84.7 |
Msa0332760 | MtrunA17_Chr2g0280701 | 26.190 | 336 | 199 | 13 | 93 | 403 | 73 | 384 | 5.00e-17 | 84.0 |
Msa0332760 | MtrunA17_Chr7g0237351 | 26.065 | 399 | 247 | 18 | 60 | 436 | 47 | 419 | 6.74e-17 | 83.2 |
Msa0332760 | MtrunA17_Chr2g0318171 | 24.022 | 358 | 220 | 14 | 93 | 435 | 90 | 410 | 9.06e-17 | 82.8 |
Msa0332760 | MtrunA17_Chr8g0361281 | 24.235 | 425 | 253 | 15 | 10 | 403 | 2 | 388 | 1.16e-16 | 82.8 |
Msa0332760 | MtrunA17_Chr7g0236231 | 25.362 | 414 | 249 | 19 | 52 | 436 | 47 | 429 | 1.34e-16 | 82.4 |
Msa0332760 | MtrunA17_Chr1g0202331 | 24.350 | 423 | 253 | 19 | 60 | 435 | 44 | 446 | 5.00e-16 | 80.9 |
Msa0332760 | MtrunA17_Chr3g0106191 | 27.451 | 357 | 213 | 15 | 96 | 436 | 2 | 328 | 5.13e-16 | 80.5 |
Msa0332760 | MtrunA17_Chr3g0106221 | 27.340 | 406 | 239 | 18 | 63 | 436 | 44 | 425 | 5.19e-16 | 80.5 |
Msa0332760 | MtrunA17_Chr3g0106201 | 25.490 | 408 | 248 | 16 | 15 | 403 | 6 | 376 | 5.39e-16 | 80.5 |
Msa0332760 | MtrunA17_Chr2g0280691 | 25.806 | 372 | 210 | 17 | 63 | 403 | 48 | 384 | 9.68e-16 | 79.7 |
Msa0332760 | MtrunA17_Chr8g0348661 | 25.679 | 405 | 247 | 19 | 60 | 436 | 31 | 409 | 1.04e-15 | 79.7 |
Msa0332760 | MtrunA17_Chr4g0042351 | 24.178 | 426 | 244 | 18 | 10 | 403 | 2 | 380 | 1.07e-15 | 79.7 |
Msa0332760 | MtrunA17_Chr7g0236521 | 24.928 | 345 | 201 | 14 | 93 | 406 | 55 | 372 | 2.57e-15 | 77.4 |
Msa0332760 | MtrunA17_Chr5g0428111 | 27.467 | 375 | 217 | 18 | 91 | 435 | 78 | 427 | 3.53e-15 | 78.2 |
Msa0332760 | MtrunA17_Chr5g0428101 | 26.331 | 357 | 188 | 17 | 91 | 409 | 77 | 396 | 1.24e-14 | 76.3 |
Msa0332760 | MtrunA17_Chr2g0318181 | 23.316 | 386 | 215 | 14 | 60 | 435 | 61 | 375 | 1.36e-14 | 75.5 |
Msa0332760 | MtrunA17_Chr3g0078541 | 25.061 | 411 | 252 | 16 | 60 | 435 | 56 | 445 | 2.26e-14 | 75.5 |
Msa0332760 | MtrunA17_Chr3g0078551 | 24.893 | 466 | 272 | 21 | 11 | 435 | 7 | 435 | 2.32e-14 | 75.5 |
Msa0332760 | MtrunA17_Chr8g0361311 | 25.495 | 404 | 252 | 19 | 60 | 437 | 43 | 423 | 2.74e-14 | 74.7 |
Msa0332760 | MtrunA17_Chr2g0280711 | 26.100 | 341 | 197 | 17 | 93 | 403 | 76 | 391 | 5.59e-14 | 74.3 |
Msa0332760 | MtrunA17_Chr8g0340061 | 26.393 | 341 | 198 | 14 | 93 | 405 | 77 | 392 | 9.45e-14 | 73.2 |
Msa0332760 | MtrunA17_Chr6g0467281 | 27.799 | 259 | 147 | 10 | 93 | 341 | 72 | 300 | 1.00e-13 | 73.6 |
Msa0332760 | MtrunA17_Chr8g0340081 | 22.777 | 461 | 284 | 18 | 5 | 436 | 8 | 425 | 1.41e-13 | 73.2 |
Msa0332760 | MtrunA17_Chr2g0318831 | 38.017 | 121 | 67 | 5 | 93 | 205 | 76 | 196 | 2.19e-13 | 72.4 |
Msa0332760 | MtrunA17_Chr8g0340091 | 24.119 | 369 | 208 | 14 | 93 | 436 | 130 | 451 | 2.89e-13 | 72.0 |
Msa0332760 | MtrunA17_Chr2g0323241 | 48.780 | 82 | 34 | 4 | 93 | 169 | 81 | 159 | 3.00e-13 | 71.2 |
Msa0332760 | MtrunA17_Chr3g0084621 | 26.269 | 335 | 198 | 16 | 93 | 403 | 79 | 388 | 6.13e-13 | 70.9 |
Msa0332760 | MtrunA17_Chr8g0361441 | 23.936 | 376 | 226 | 16 | 93 | 435 | 77 | 425 | 9.34e-13 | 70.5 |
Msa0332760 | MtrunA17_Chr7g0236121 | 24.789 | 355 | 204 | 17 | 90 | 408 | 74 | 401 | 1.04e-12 | 70.1 |
Msa0332760 | MtrunA17_Chr4g0042421 | 29.155 | 343 | 184 | 19 | 93 | 403 | 73 | 388 | 1.04e-12 | 70.1 |
Msa0332760 | MtrunA17_Chr7g0236161 | 24.789 | 355 | 204 | 17 | 90 | 408 | 74 | 401 | 1.17e-12 | 70.1 |
Msa0332760 | MtrunA17_Chr5g0394381 | 23.577 | 369 | 234 | 15 | 63 | 412 | 45 | 384 | 1.19e-12 | 70.1 |
Msa0332760 | MtrunA17_Chr7g0236201 | 24.789 | 355 | 204 | 17 | 90 | 408 | 74 | 401 | 1.24e-12 | 70.1 |
Msa0332760 | MtrunA17_Chr5g0399561 | 24.682 | 393 | 226 | 17 | 63 | 413 | 47 | 411 | 2.23e-12 | 69.3 |
Msa0332760 | MtrunA17_Chr8g0361251 | 25.062 | 403 | 255 | 17 | 60 | 437 | 43 | 423 | 3.08e-12 | 68.9 |
Msa0332760 | MtrunA17_Chr8g0338501 | 24.269 | 342 | 222 | 14 | 93 | 413 | 109 | 434 | 4.85e-12 | 68.2 |
Msa0332760 | MtrunA17_Chr8g0361301 | 24.084 | 382 | 220 | 17 | 93 | 437 | 75 | 423 | 6.55e-12 | 67.8 |
Msa0332760 | MtrunA17_Chr4g0042441 | 24.468 | 376 | 221 | 15 | 60 | 403 | 43 | 387 | 6.80e-12 | 67.8 |
Msa0332760 | MtrunA17_Chr2g0311511 | 28.646 | 192 | 124 | 5 | 39 | 223 | 35 | 220 | 1.04e-11 | 67.0 |
Msa0332760 | MtrunA17_Chr3g0078521 | 24.088 | 411 | 257 | 16 | 60 | 435 | 44 | 434 | 1.10e-11 | 67.0 |
Msa0332760 | MtrunA17_Chr4g0048691 | 25.714 | 350 | 190 | 16 | 93 | 403 | 96 | 414 | 1.20e-11 | 66.6 |
Msa0332760 | MtrunA17_Chr4g0023221 | 24.194 | 434 | 220 | 22 | 46 | 417 | 53 | 439 | 1.98e-11 | 66.2 |
Msa0332760 | MtrunA17_Chr8g0338471 | 23.596 | 356 | 207 | 13 | 93 | 413 | 80 | 405 | 2.67e-11 | 65.9 |
Msa0332760 | MtrunA17_Chr8g0340071 | 24.668 | 377 | 222 | 18 | 93 | 436 | 77 | 424 | 4.37e-11 | 65.1 |
Msa0332760 | MtrunA17_Chr7g0236551 | 24.702 | 336 | 208 | 15 | 93 | 406 | 75 | 387 | 4.61e-11 | 65.1 |
Msa0332760 | MtrunA17_Chr4g0063691 | 24.384 | 365 | 243 | 13 | 63 | 405 | 59 | 412 | 4.95e-11 | 65.1 |
Msa0332760 | MtrunA17_Chr4g0042381 | 33.133 | 166 | 89 | 9 | 63 | 210 | 46 | 207 | 5.39e-11 | 64.7 |
Msa0332760 | MtrunA17_Chr2g0311541 | 23.919 | 393 | 270 | 13 | 39 | 413 | 18 | 399 | 5.88e-11 | 64.7 |
Msa0332760 | MtrunA17_Chr6g0467301 | 26.641 | 259 | 150 | 10 | 93 | 341 | 77 | 305 | 5.89e-11 | 64.7 |
Msa0332760 | MtrunA17_Chr8g0361261 | 34.167 | 120 | 71 | 4 | 93 | 204 | 106 | 225 | 7.75e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0332760 | AT1G78850.1 | 48.174 | 438 | 205 | 7 | 12 | 437 | 7 | 434 | 1.50e-141 | 412 |
Msa0332760 | AT1G78860.1 | 47.796 | 431 | 217 | 6 | 12 | 437 | 7 | 434 | 2.30e-141 | 412 |
Msa0332760 | AT1G78830.1 | 42.291 | 454 | 226 | 8 | 11 | 434 | 7 | 454 | 6.43e-119 | 355 |
Msa0332760 | AT1G16905.1 | 42.453 | 424 | 205 | 7 | 28 | 437 | 24 | 422 | 3.21e-115 | 344 |
Msa0332760 | AT1G78820.1 | 40.749 | 454 | 232 | 9 | 11 | 434 | 8 | 454 | 4.06e-110 | 332 |
Msa0332760 | AT5G35370.1 | 27.224 | 371 | 208 | 19 | 93 | 435 | 86 | 422 | 8.91e-24 | 105 |
Msa0332760 | AT4G00340.1 | 26.733 | 404 | 255 | 14 | 54 | 438 | 31 | 412 | 2.65e-20 | 94.4 |
Msa0332760 | AT4G00340.2 | 28.184 | 369 | 232 | 13 | 54 | 410 | 31 | 378 | 5.47e-20 | 93.2 |
Msa0332760 | AT4G32300.1 | 23.711 | 388 | 259 | 13 | 60 | 437 | 52 | 412 | 8.75e-20 | 92.8 |
Msa0332760 | AT4G21390.1 | 25.526 | 333 | 209 | 12 | 93 | 403 | 79 | 394 | 4.55e-19 | 90.5 |
Msa0332760 | AT4G21390.2 | 25.526 | 333 | 209 | 12 | 93 | 403 | 79 | 394 | 4.96e-19 | 90.5 |
Msa0332760 | AT1G65790.3 | 27.654 | 358 | 219 | 14 | 63 | 403 | 51 | 385 | 6.36e-19 | 89.7 |
Msa0332760 | AT1G65790.2 | 27.654 | 358 | 219 | 14 | 63 | 403 | 51 | 385 | 6.36e-19 | 89.7 |
Msa0332760 | AT1G65790.1 | 28.354 | 328 | 199 | 12 | 92 | 403 | 78 | 385 | 9.21e-19 | 89.7 |
Msa0332760 | AT4G11900.6 | 26.067 | 445 | 214 | 22 | 63 | 437 | 49 | 448 | 1.12e-18 | 89.4 |
Msa0332760 | AT4G11900.4 | 26.067 | 445 | 214 | 22 | 63 | 437 | 49 | 448 | 1.12e-18 | 89.4 |
Msa0332760 | AT4G11900.7 | 26.067 | 445 | 214 | 22 | 63 | 437 | 49 | 448 | 1.41e-18 | 89.0 |
Msa0332760 | AT4G11900.2 | 26.067 | 445 | 214 | 22 | 63 | 437 | 49 | 448 | 1.47e-18 | 89.0 |
Msa0332760 | AT4G11900.3 | 26.067 | 445 | 214 | 22 | 63 | 437 | 49 | 448 | 1.47e-18 | 89.0 |
Msa0332760 | AT4G11900.1 | 26.067 | 445 | 214 | 22 | 63 | 437 | 49 | 448 | 1.54e-18 | 89.0 |
Msa0332760 | AT4G11900.10 | 26.185 | 443 | 212 | 22 | 63 | 435 | 49 | 446 | 2.08e-18 | 88.2 |
Msa0332760 | AT4G11900.5 | 26.185 | 443 | 212 | 22 | 63 | 435 | 49 | 446 | 2.08e-18 | 88.2 |
Msa0332760 | AT4G11900.8 | 27.094 | 406 | 197 | 20 | 93 | 437 | 12 | 379 | 6.63e-18 | 86.7 |
Msa0332760 | AT3G12000.1 | 27.778 | 378 | 212 | 18 | 63 | 408 | 56 | 404 | 9.17e-18 | 85.5 |
Msa0332760 | AT4G11900.9 | 27.094 | 406 | 197 | 20 | 93 | 437 | 12 | 379 | 1.03e-17 | 86.3 |
Msa0332760 | AT1G11330.2 | 25.507 | 345 | 205 | 13 | 93 | 407 | 84 | 406 | 3.03e-16 | 81.6 |
Msa0332760 | AT1G11330.1 | 25.507 | 345 | 205 | 13 | 93 | 407 | 84 | 406 | 3.39e-16 | 81.6 |
Msa0332760 | AT1G11330.3 | 25.507 | 345 | 205 | 13 | 93 | 407 | 84 | 406 | 3.48e-16 | 81.6 |
Msa0332760 | AT1G11303.1 | 24.927 | 341 | 205 | 17 | 93 | 405 | 77 | 394 | 2.55e-15 | 79.0 |
Msa0332760 | AT2G19130.1 | 23.362 | 458 | 275 | 20 | 9 | 433 | 2 | 416 | 2.98e-15 | 78.6 |
Msa0332760 | AT1G65800.2 | 26.593 | 361 | 223 | 15 | 63 | 403 | 51 | 389 | 3.99e-15 | 78.2 |
Msa0332760 | AT1G65800.1 | 26.593 | 361 | 223 | 15 | 63 | 403 | 51 | 389 | 4.77e-15 | 78.2 |
Msa0332760 | AT1G11300.2 | 24.927 | 341 | 199 | 16 | 93 | 402 | 77 | 391 | 6.13e-15 | 77.8 |
Msa0332760 | AT4G27290.1 | 23.843 | 432 | 244 | 19 | 9 | 403 | 4 | 387 | 7.95e-15 | 77.4 |
Msa0332760 | AT4G27290.2 | 23.843 | 432 | 244 | 19 | 9 | 403 | 4 | 387 | 8.79e-15 | 77.4 |
Msa0332760 | AT1G11300.1 | 24.927 | 341 | 199 | 16 | 93 | 402 | 77 | 391 | 9.22e-15 | 77.0 |
Msa0332760 | AT4G21380.2 | 25.373 | 335 | 204 | 11 | 92 | 403 | 80 | 391 | 2.13e-14 | 75.9 |
Msa0332760 | AT4G21380.1 | 25.373 | 335 | 204 | 11 | 92 | 403 | 80 | 391 | 2.76e-14 | 75.9 |
Msa0332760 | AT2G41890.1 | 27.937 | 315 | 186 | 14 | 108 | 408 | 96 | 383 | 4.11e-14 | 75.1 |
Msa0332760 | AT1G61390.1 | 26.437 | 348 | 190 | 20 | 93 | 405 | 91 | 407 | 2.53e-13 | 72.8 |
Msa0332760 | AT1G61380.1 | 25.364 | 343 | 200 | 17 | 93 | 405 | 70 | 386 | 4.69e-12 | 68.6 |
Msa0332760 | AT4G03230.5 | 25.836 | 329 | 189 | 16 | 113 | 414 | 30 | 330 | 7.15e-12 | 68.2 |
Find 84 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCTGAATTTACAAATTTAA+AGG | 0.159770 | 2_4:-50031481 | None:intergenic |
CCAGAGAGATGTGGAAAATT+TGG | 0.163981 | 2_4:+50032341 | Msa0332760:CDS |
GATGAAAACCAATATTTAAT+TGG | 0.217057 | 2_4:-50032032 | None:intergenic |
CCATTAGAGAATGGAATATT+TGG | 0.219627 | 2_4:+50032395 | Msa0332760:CDS |
AAAGGCAACAACGCCTTTAT+TGG | 0.229321 | 2_4:-50031778 | None:intergenic |
GTTATCTTTGTGGTAGAAAT+AGG | 0.244063 | 2_4:-50032588 | None:intergenic |
GGCAACCCAGTTGGTGAAAA+TGG | 0.249330 | 2_4:+50031678 | Msa0332760:CDS |
CTCCTAGGCCAATTAAATAT+TGG | 0.250764 | 2_4:+50032024 | Msa0332760:CDS |
TTTGTAAATTCAGGTGAAAT+TGG | 0.251028 | 2_4:+50031489 | Msa0332760:CDS |
ACCTTTAAATTTGTAAATTC+AGG | 0.259009 | 2_4:+50031480 | Msa0332760:CDS |
GGAGACTTCATTGTAGAATA+TGG | 0.271305 | 2_4:+50031510 | Msa0332760:CDS |
AATCCAAACTCAAAAGATTC+TGG | 0.288160 | 2_4:-50032110 | None:intergenic |
TGGTCCTTATAGTTTGGTTT+TGG | 0.289630 | 2_4:+50031962 | Msa0332760:CDS |
CAGAGAGATGTGGAAAATTT+GGG | 0.298081 | 2_4:+50032342 | Msa0332760:CDS |
CACACACGTGGGTTATATTA+AGG | 0.310672 | 2_4:+50032664 | Msa0332760:CDS |
CCAAATATTCCATTCTCTAA+TGG | 0.320122 | 2_4:-50032395 | None:intergenic |
ATTCTAAAGGTAAATTTGTT+TGG | 0.320757 | 2_4:+50031835 | Msa0332760:CDS |
AAATGTAGTCCTAAGCCTTT+AGG | 0.329988 | 2_4:+50032428 | Msa0332760:CDS |
GAGCTAAAGTGAAGGCATTT+GGG | 0.330818 | 2_4:-50031596 | None:intergenic |
GTTGCCAATTCTACCACTTT+TGG | 0.332677 | 2_4:+50032143 | Msa0332760:CDS |
TAATATAAAGCCAAACCTTT+AGG | 0.338248 | 2_4:-50031987 | None:intergenic |
AACTTATCTTGTTACTTATT+AGG | 0.341926 | 2_4:-50032689 | None:intergenic |
ATGATCTTCAAACTCTTACT+AGG | 0.347522 | 2_4:+50032630 | Msa0332760:CDS |
ATAAAGGCGTTGTTGCCTTT+AGG | 0.347561 | 2_4:+50031781 | Msa0332760:CDS |
AGAGCTAAAGTGAAGGCATT+TGG | 0.351732 | 2_4:-50031597 | None:intergenic |
CAAACAAACACCTCCAATAA+AGG | 0.357643 | 2_4:+50031765 | Msa0332760:CDS |
TGTTGATGGTCCTTATAGTT+TGG | 0.357941 | 2_4:+50031956 | Msa0332760:CDS |
GGCTCCAAAACCAAACTATA+AGG | 0.363469 | 2_4:-50031966 | None:intergenic |
ATTGCCAAAAGTGGTAGAAT+TGG | 0.375193 | 2_4:-50032147 | None:intergenic |
TTAAATATTGATCTACCAAA+AGG | 0.385064 | 2_4:-50031884 | None:intergenic |
TATCTTAGGCTTGGAATAGA+TGG | 0.393916 | 2_4:+50032209 | Msa0332760:CDS |
GAACAATTGCATGAGCAATT+AGG | 0.399722 | 2_4:-50031446 | None:intergenic |
ATAGTACCTTAACATATCTT+AGG | 0.400121 | 2_4:+50032195 | Msa0332760:CDS |
CCATCCAACAGATACCCTTT+TGG | 0.407418 | 2_4:+50031869 | Msa0332760:CDS |
GCCTTTAGGTTACTCTCAAA+TGG | 0.414987 | 2_4:+50031795 | Msa0332760:CDS |
GATCAATATTTAAAACCTAA+TGG | 0.423070 | 2_4:+50031894 | Msa0332760:CDS |
TTTCATTACTACAAAATTGA+AGG | 0.426055 | 2_4:+50032473 | Msa0332760:CDS |
ACCTTAACATATCTTAGGCT+TGG | 0.444137 | 2_4:+50032200 | Msa0332760:CDS |
TAGATGTGCGTAGTGGTGTT+TGG | 0.444607 | 2_4:+50032258 | Msa0332760:CDS |
GGCAACACACTTACAATCCT+TGG | 0.454150 | 2_4:-50032567 | None:intergenic |
TCCAAGCCTAAGATATGTTA+AGG | 0.454584 | 2_4:-50032201 | None:intergenic |
TTCACTTTAGCTCTTCGAAT+GGG | 0.460119 | 2_4:+50031606 | Msa0332760:CDS |
GTTAAGGTACTATTATTCTC+TGG | 0.479837 | 2_4:-50032185 | None:intergenic |
TGATCTTCAAACTCTTACTA+GGG | 0.488038 | 2_4:+50032631 | Msa0332760:CDS |
CATACTCCTCCTAAAGGCTT+AGG | 0.506091 | 2_4:-50032437 | None:intergenic |
TAGAGAATGGAATATTTGGT+TGG | 0.506562 | 2_4:+50032399 | Msa0332760:CDS |
AACACCTTGAGTTATCTTTG+TGG | 0.506678 | 2_4:-50032598 | None:intergenic |
AATGATACTATTGCCAAAAG+TGG | 0.507158 | 2_4:-50032156 | None:intergenic |
TAAATATTGATCTACCAAAA+GGG | 0.508323 | 2_4:-50031883 | None:intergenic |
AAACACCACTACGCACATCT+AGG | 0.508804 | 2_4:-50032256 | None:intergenic |
AACCAATATTTAATTGGCCT+AGG | 0.509751 | 2_4:-50032026 | None:intergenic |
ACCATTTGAGAGTAACCTAA+AGG | 0.511899 | 2_4:-50031796 | None:intergenic |
TTCAATGCTCCATTTCAAGT+TGG | 0.513788 | 2_4:+50031558 | Msa0332760:CDS |
ATAAGAGTCAAAATTCTCCT+AGG | 0.518462 | 2_4:+50032009 | Msa0332760:CDS |
GGCAACAACGCCTTTATTGG+AGG | 0.528094 | 2_4:-50031775 | None:intergenic |
ATGCTGATGGAAGAATTGTT+TGG | 0.528512 | 2_4:+50031742 | Msa0332760:CDS |
CTTGTGTTGGCTAATGCTGA+TGG | 0.532407 | 2_4:+50031729 | Msa0332760:CDS |
TACATGAGCAAATACACTAC+TGG | 0.549173 | 2_4:+50032506 | Msa0332760:CDS |
GCATTGCATACTCCTCCTAA+AGG | 0.549299 | 2_4:-50032443 | None:intergenic |
TGTGAGAATAATCAATGTGT+TGG | 0.555696 | 2_4:+50032368 | Msa0332760:CDS |
TTCTGATGGAAATCTTGTGT+TGG | 0.561938 | 2_4:+50031716 | Msa0332760:CDS |
ACAAAGATAACTCAAGGTGT+TGG | 0.569098 | 2_4:+50032600 | Msa0332760:CDS |
CTTCACTTTAGCTCTTCGAA+TGG | 0.572337 | 2_4:+50031605 | Msa0332760:CDS |
TTGGCAATAGTATCATTGGT+AGG | 0.574498 | 2_4:+50032162 | Msa0332760:CDS |
GAACAATAAAGTGAGAAATG+AGG | 0.575777 | 2_4:-50031409 | None:intergenic |
TCTACCAAAAGGGTATCTGT+TGG | 0.577829 | 2_4:-50031873 | None:intergenic |
GTTGGTTGTCCATTAGAGAA+TGG | 0.582754 | 2_4:+50032386 | Msa0332760:CDS |
AGCTAAAGTGAAGGCATTTG+GGG | 0.589808 | 2_4:-50031595 | None:intergenic |
CCAAAAGGGTATCTGTTGGA+TGG | 0.591595 | 2_4:-50031869 | None:intergenic |
GTTACTCTCAAATGGTAACA+TGG | 0.602406 | 2_4:+50031803 | Msa0332760:CDS |
GCAAATAGAGGCAACCCAGT+TGG | 0.604835 | 2_4:+50031669 | Msa0332760:CDS |
TATTTGCTTCCCATACCCAC+CGG | 0.610134 | 2_4:-50031653 | None:intergenic |
TGTAGTCCTAAGCCTTTAGG+AGG | 0.617462 | 2_4:+50032431 | Msa0332760:CDS |
TGGGTATGGGAAGCAAATAG+AGG | 0.619163 | 2_4:+50031657 | Msa0332760:CDS |
TCTACCACAAAGATAACTCA+AGG | 0.628662 | 2_4:+50032594 | Msa0332760:CDS |
TCGAATGGGACTTCAACGAT+CGG | 0.632353 | 2_4:+50031620 | Msa0332760:CDS |
CTTAATATAACCCACGTGTG+TGG | 0.638489 | 2_4:-50032663 | None:intergenic |
TGTCAATTGCCAGAGAGATG+TGG | 0.651671 | 2_4:+50032332 | Msa0332760:CDS |
GACTTCATTGTAGAATATGG+AGG | 0.660683 | 2_4:+50031513 | Msa0332760:CDS |
TTGTGCAAATAAATGTACCA+AGG | 0.661724 | 2_4:+50032550 | Msa0332760:CDS |
TACTTCCTAGATGTGCGTAG+TGG | 0.664500 | 2_4:+50032251 | Msa0332760:CDS |
GGTTGAAAATACCACACACG+TGG | 0.666812 | 2_4:+50032652 | Msa0332760:CDS |
CATTCGAAGAGCTAAAGTGA+AGG | 0.676387 | 2_4:-50031604 | None:intergenic |
GTTGAAAATACCACACACGT+GGG | 0.761624 | 2_4:+50032653 | Msa0332760:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTAAAGGTTTCATTTTG+TGG | - | chr2_4:50031471-50031490 | None:intergenic | 20.0% |
!! | ACCTTTAAATTTGTAAATTC+AGG | + | chr2_4:50031480-50031499 | Msa0332760:CDS | 20.0% |
!! | ACCTGAATTTACAAATTTAA+AGG | - | chr2_4:50031484-50031503 | None:intergenic | 20.0% |
!!! | ATGGTTTTAATTGATTCTAA+AGG | + | chr2_4:50031822-50031841 | Msa0332760:CDS | 20.0% |
!!! | ATTCTAAAGGTAAATTTGTT+TGG | + | chr2_4:50031835-50031854 | Msa0332760:CDS | 20.0% |
!! | TAAATATTGATCTACCAAAA+GGG | - | chr2_4:50031886-50031905 | None:intergenic | 20.0% |
!! | TTAAATATTGATCTACCAAA+AGG | - | chr2_4:50031887-50031906 | None:intergenic | 20.0% |
!!! | GATCAATATTTAAAACCTAA+TGG | + | chr2_4:50031894-50031913 | Msa0332760:CDS | 20.0% |
!! | GATGAAAACCAATATTTAAT+TGG | - | chr2_4:50032035-50032054 | None:intergenic | 20.0% |
!! | TTTCATTACTACAAAATTGA+AGG | + | chr2_4:50032473-50032492 | Msa0332760:CDS | 20.0% |
!!! | AATTTAAAGGTTTCATTTTG+TGG | - | chr2_4:50031471-50031490 | None:intergenic | 20.0% |
!! | ACCTTTAAATTTGTAAATTC+AGG | + | chr2_4:50031480-50031499 | Msa0332760:CDS | 20.0% |
!! | ACCTGAATTTACAAATTTAA+AGG | - | chr2_4:50031484-50031503 | None:intergenic | 20.0% |
!!! | ATGGTTTTAATTGATTCTAA+AGG | + | chr2_4:50031822-50031841 | Msa0332760:CDS | 20.0% |
!!! | ATTCTAAAGGTAAATTTGTT+TGG | + | chr2_4:50031835-50031854 | Msa0332760:CDS | 20.0% |
!! | TAAATATTGATCTACCAAAA+GGG | - | chr2_4:50031886-50031905 | None:intergenic | 20.0% |
!! | TTAAATATTGATCTACCAAA+AGG | - | chr2_4:50031887-50031906 | None:intergenic | 20.0% |
!!! | GATCAATATTTAAAACCTAA+TGG | + | chr2_4:50031894-50031913 | Msa0332760:CDS | 20.0% |
!! | GATGAAAACCAATATTTAAT+TGG | - | chr2_4:50032035-50032054 | None:intergenic | 20.0% |
!! | TTTCATTACTACAAAATTGA+AGG | + | chr2_4:50032473-50032492 | Msa0332760:CDS | 20.0% |
! | TTTGTAAATTCAGGTGAAAT+TGG | + | chr2_4:50031489-50031508 | Msa0332760:CDS | 25.0% |
! | TTGTAAAAACCAACTTGAAA+TGG | - | chr2_4:50031570-50031589 | None:intergenic | 25.0% |
!!! | GAAAATGGAACTTTTTCATT+AGG | + | chr2_4:50031693-50031712 | Msa0332760:CDS | 25.0% |
! | TCAGAAAAAGAAAATGTTGA+TGG | + | chr2_4:50031942-50031961 | Msa0332760:CDS | 25.0% |
! | TAATATAAAGCCAAACCTTT+AGG | - | chr2_4:50031990-50032009 | None:intergenic | 25.0% |
!!! | AATATTGGTTTTCATCTTCT+TGG | + | chr2_4:50032039-50032058 | Msa0332760:CDS | 25.0% |
! | ATAGTACCTTAACATATCTT+AGG | + | chr2_4:50032195-50032214 | Msa0332760:CDS | 25.0% |
! | TTTGTAAATTCAGGTGAAAT+TGG | + | chr2_4:50031489-50031508 | Msa0332760:CDS | 25.0% |
! | TTGTAAAAACCAACTTGAAA+TGG | - | chr2_4:50031570-50031589 | None:intergenic | 25.0% |
!!! | GAAAATGGAACTTTTTCATT+AGG | + | chr2_4:50031693-50031712 | Msa0332760:CDS | 25.0% |
! | TCAGAAAAAGAAAATGTTGA+TGG | + | chr2_4:50031942-50031961 | Msa0332760:CDS | 25.0% |
! | TAATATAAAGCCAAACCTTT+AGG | - | chr2_4:50031990-50032009 | None:intergenic | 25.0% |
!!! | AATATTGGTTTTCATCTTCT+TGG | + | chr2_4:50032039-50032058 | Msa0332760:CDS | 25.0% |
! | ATAGTACCTTAACATATCTT+AGG | + | chr2_4:50032195-50032214 | Msa0332760:CDS | 25.0% |
! | AAGTGAGAAATGAGGTTTTA+GGG | - | chr2_4:50031404-50031423 | None:intergenic | 30.0% |
! | AAAGTGAGAAATGAGGTTTT+AGG | - | chr2_4:50031405-50031424 | None:intergenic | 30.0% |
GAACAATAAAGTGAGAAATG+AGG | - | chr2_4:50031412-50031431 | None:intergenic | 30.0% | |
!!! | ACTTTTTCATTAGGTTCTGA+TGG | + | chr2_4:50031702-50031721 | Msa0332760:CDS | 30.0% |
!! | AGTCTACTAACAAGTTTTGA+AGG | - | chr2_4:50031921-50031940 | None:intergenic | 30.0% |
ATAAGAGTCAAAATTCTCCT+AGG | + | chr2_4:50032009-50032028 | Msa0332760:CDS | 30.0% | |
! | AACCAATATTTAATTGGCCT+AGG | - | chr2_4:50032029-50032048 | None:intergenic | 30.0% |
!! | TCTTGGTTTTCATTTGAAGA+AGG | + | chr2_4:50032056-50032075 | Msa0332760:CDS | 30.0% |
AATCCAAACTCAAAAGATTC+TGG | - | chr2_4:50032113-50032132 | None:intergenic | 30.0% | |
AATGATACTATTGCCAAAAG+TGG | - | chr2_4:50032159-50032178 | None:intergenic | 30.0% | |
! | ACTTTTGGCAATAGTATCAT+TGG | + | chr2_4:50032158-50032177 | Msa0332760:CDS | 30.0% |
! | GTTAAGGTACTATTATTCTC+TGG | - | chr2_4:50032188-50032207 | None:intergenic | 30.0% |
TGTGAGAATAATCAATGTGT+TGG | + | chr2_4:50032368-50032387 | Msa0332760:CDS | 30.0% | |
CCAAATATTCCATTCTCTAA+TGG | - | chr2_4:50032398-50032417 | None:intergenic | 30.0% | |
CCATTAGAGAATGGAATATT+TGG | + | chr2_4:50032395-50032414 | Msa0332760:CDS | 30.0% | |
TAGAGAATGGAATATTTGGT+TGG | + | chr2_4:50032399-50032418 | Msa0332760:CDS | 30.0% | |
TTGTGCAAATAAATGTACCA+AGG | + | chr2_4:50032550-50032569 | Msa0332760:CDS | 30.0% | |
GTTATCTTTGTGGTAGAAAT+AGG | - | chr2_4:50032591-50032610 | None:intergenic | 30.0% | |
ATGATCTTCAAACTCTTACT+AGG | + | chr2_4:50032630-50032649 | Msa0332760:CDS | 30.0% | |
TGATCTTCAAACTCTTACTA+GGG | + | chr2_4:50032631-50032650 | Msa0332760:CDS | 30.0% | |
! | AAGTGAGAAATGAGGTTTTA+GGG | - | chr2_4:50031404-50031423 | None:intergenic | 30.0% |
! | AAAGTGAGAAATGAGGTTTT+AGG | - | chr2_4:50031405-50031424 | None:intergenic | 30.0% |
GAACAATAAAGTGAGAAATG+AGG | - | chr2_4:50031412-50031431 | None:intergenic | 30.0% | |
!!! | ACTTTTTCATTAGGTTCTGA+TGG | + | chr2_4:50031702-50031721 | Msa0332760:CDS | 30.0% |
!! | AGTCTACTAACAAGTTTTGA+AGG | - | chr2_4:50031921-50031940 | None:intergenic | 30.0% |
ATAAGAGTCAAAATTCTCCT+AGG | + | chr2_4:50032009-50032028 | Msa0332760:CDS | 30.0% | |
! | AACCAATATTTAATTGGCCT+AGG | - | chr2_4:50032029-50032048 | None:intergenic | 30.0% |
!! | TCTTGGTTTTCATTTGAAGA+AGG | + | chr2_4:50032056-50032075 | Msa0332760:CDS | 30.0% |
AATCCAAACTCAAAAGATTC+TGG | - | chr2_4:50032113-50032132 | None:intergenic | 30.0% | |
AATGATACTATTGCCAAAAG+TGG | - | chr2_4:50032159-50032178 | None:intergenic | 30.0% | |
! | ACTTTTGGCAATAGTATCAT+TGG | + | chr2_4:50032158-50032177 | Msa0332760:CDS | 30.0% |
! | GTTAAGGTACTATTATTCTC+TGG | - | chr2_4:50032188-50032207 | None:intergenic | 30.0% |
TGTGAGAATAATCAATGTGT+TGG | + | chr2_4:50032368-50032387 | Msa0332760:CDS | 30.0% | |
CCAAATATTCCATTCTCTAA+TGG | - | chr2_4:50032398-50032417 | None:intergenic | 30.0% | |
CCATTAGAGAATGGAATATT+TGG | + | chr2_4:50032395-50032414 | Msa0332760:CDS | 30.0% | |
TAGAGAATGGAATATTTGGT+TGG | + | chr2_4:50032399-50032418 | Msa0332760:CDS | 30.0% | |
TTGTGCAAATAAATGTACCA+AGG | + | chr2_4:50032550-50032569 | Msa0332760:CDS | 30.0% | |
GTTATCTTTGTGGTAGAAAT+AGG | - | chr2_4:50032591-50032610 | None:intergenic | 30.0% | |
ATGATCTTCAAACTCTTACT+AGG | + | chr2_4:50032630-50032649 | Msa0332760:CDS | 30.0% | |
TGATCTTCAAACTCTTACTA+GGG | + | chr2_4:50032631-50032650 | Msa0332760:CDS | 30.0% | |
GAACAATTGCATGAGCAATT+AGG | - | chr2_4:50031449-50031468 | None:intergenic | 35.0% | |
GGAGACTTCATTGTAGAATA+TGG | + | chr2_4:50031510-50031529 | Msa0332760:CDS | 35.0% | |
GACTTCATTGTAGAATATGG+AGG | + | chr2_4:50031513-50031532 | Msa0332760:CDS | 35.0% | |
! | TTCAATGCTCCATTTCAAGT+TGG | + | chr2_4:50031558-50031577 | Msa0332760:CDS | 35.0% |
!! | TTCACTTTAGCTCTTCGAAT+GGG | + | chr2_4:50031606-50031625 | Msa0332760:CDS | 35.0% |
! | AAGTTCCATTTTCACCAACT+GGG | - | chr2_4:50031686-50031705 | None:intergenic | 35.0% |
! | AAAGTTCCATTTTCACCAAC+TGG | - | chr2_4:50031687-50031706 | None:intergenic | 35.0% |
TTCTGATGGAAATCTTGTGT+TGG | + | chr2_4:50031716-50031735 | Msa0332760:CDS | 35.0% | |
ATGCTGATGGAAGAATTGTT+TGG | + | chr2_4:50031742-50031761 | Msa0332760:CDS | 35.0% | |
CAAACAAACACCTCCAATAA+AGG | + | chr2_4:50031765-50031784 | Msa0332760:CDS | 35.0% | |
ACCATTTGAGAGTAACCTAA+AGG | - | chr2_4:50031799-50031818 | None:intergenic | 35.0% | |
GTTACTCTCAAATGGTAACA+TGG | + | chr2_4:50031803-50031822 | Msa0332760:CDS | 35.0% | |
!!! | ACAAGTTTTGAAGGACCATT+AGG | - | chr2_4:50031912-50031931 | None:intergenic | 35.0% |
!! | TGTTGATGGTCCTTATAGTT+TGG | + | chr2_4:50031956-50031975 | Msa0332760:CDS | 35.0% |
!! | TGGTCCTTATAGTTTGGTTT+TGG | + | chr2_4:50031962-50031981 | Msa0332760:CDS | 35.0% |
CTCCTAGGCCAATTAAATAT+TGG | + | chr2_4:50032024-50032043 | Msa0332760:CDS | 35.0% | |
!!! | GATCCAGAATCTTTTGAGTT+TGG | + | chr2_4:50032107-50032126 | Msa0332760:CDS | 35.0% |
ATTGCCAAAAGTGGTAGAAT+TGG | - | chr2_4:50032150-50032169 | None:intergenic | 35.0% | |
TTGGCAATAGTATCATTGGT+AGG | + | chr2_4:50032162-50032181 | Msa0332760:CDS | 35.0% | |
ACCTTAACATATCTTAGGCT+TGG | + | chr2_4:50032200-50032219 | Msa0332760:CDS | 35.0% | |
TCCAAGCCTAAGATATGTTA+AGG | - | chr2_4:50032204-50032223 | None:intergenic | 35.0% | |
TATCTTAGGCTTGGAATAGA+TGG | + | chr2_4:50032209-50032228 | Msa0332760:CDS | 35.0% | |
CAGAGAGATGTGGAAAATTT+GGG | + | chr2_4:50032342-50032361 | Msa0332760:CDS | 35.0% | |
AAATGTAGTCCTAAGCCTTT+AGG | + | chr2_4:50032428-50032447 | Msa0332760:CDS | 35.0% | |
TACATGAGCAAATACACTAC+TGG | + | chr2_4:50032506-50032525 | Msa0332760:CDS | 35.0% | |
TCTACCACAAAGATAACTCA+AGG | + | chr2_4:50032594-50032613 | Msa0332760:CDS | 35.0% | |
AACACCTTGAGTTATCTTTG+TGG | - | chr2_4:50032601-50032620 | None:intergenic | 35.0% | |
ACAAAGATAACTCAAGGTGT+TGG | + | chr2_4:50032600-50032619 | Msa0332760:CDS | 35.0% | |
GAACAATTGCATGAGCAATT+AGG | - | chr2_4:50031449-50031468 | None:intergenic | 35.0% | |
GGAGACTTCATTGTAGAATA+TGG | + | chr2_4:50031510-50031529 | Msa0332760:CDS | 35.0% | |
GACTTCATTGTAGAATATGG+AGG | + | chr2_4:50031513-50031532 | Msa0332760:CDS | 35.0% | |
! | TTCAATGCTCCATTTCAAGT+TGG | + | chr2_4:50031558-50031577 | Msa0332760:CDS | 35.0% |
!! | TTCACTTTAGCTCTTCGAAT+GGG | + | chr2_4:50031606-50031625 | Msa0332760:CDS | 35.0% |
! | AAGTTCCATTTTCACCAACT+GGG | - | chr2_4:50031686-50031705 | None:intergenic | 35.0% |
! | AAAGTTCCATTTTCACCAAC+TGG | - | chr2_4:50031687-50031706 | None:intergenic | 35.0% |
TTCTGATGGAAATCTTGTGT+TGG | + | chr2_4:50031716-50031735 | Msa0332760:CDS | 35.0% | |
ATGCTGATGGAAGAATTGTT+TGG | + | chr2_4:50031742-50031761 | Msa0332760:CDS | 35.0% | |
CAAACAAACACCTCCAATAA+AGG | + | chr2_4:50031765-50031784 | Msa0332760:CDS | 35.0% | |
ACCATTTGAGAGTAACCTAA+AGG | - | chr2_4:50031799-50031818 | None:intergenic | 35.0% | |
GTTACTCTCAAATGGTAACA+TGG | + | chr2_4:50031803-50031822 | Msa0332760:CDS | 35.0% | |
!!! | ACAAGTTTTGAAGGACCATT+AGG | - | chr2_4:50031912-50031931 | None:intergenic | 35.0% |
!! | TGTTGATGGTCCTTATAGTT+TGG | + | chr2_4:50031956-50031975 | Msa0332760:CDS | 35.0% |
!! | TGGTCCTTATAGTTTGGTTT+TGG | + | chr2_4:50031962-50031981 | Msa0332760:CDS | 35.0% |
CTCCTAGGCCAATTAAATAT+TGG | + | chr2_4:50032024-50032043 | Msa0332760:CDS | 35.0% | |
!!! | GATCCAGAATCTTTTGAGTT+TGG | + | chr2_4:50032107-50032126 | Msa0332760:CDS | 35.0% |
ATTGCCAAAAGTGGTAGAAT+TGG | - | chr2_4:50032150-50032169 | None:intergenic | 35.0% | |
TTGGCAATAGTATCATTGGT+AGG | + | chr2_4:50032162-50032181 | Msa0332760:CDS | 35.0% | |
ACCTTAACATATCTTAGGCT+TGG | + | chr2_4:50032200-50032219 | Msa0332760:CDS | 35.0% | |
TCCAAGCCTAAGATATGTTA+AGG | - | chr2_4:50032204-50032223 | None:intergenic | 35.0% | |
TATCTTAGGCTTGGAATAGA+TGG | + | chr2_4:50032209-50032228 | Msa0332760:CDS | 35.0% | |
CAGAGAGATGTGGAAAATTT+GGG | + | chr2_4:50032342-50032361 | Msa0332760:CDS | 35.0% | |
AAATGTAGTCCTAAGCCTTT+AGG | + | chr2_4:50032428-50032447 | Msa0332760:CDS | 35.0% | |
TACATGAGCAAATACACTAC+TGG | + | chr2_4:50032506-50032525 | Msa0332760:CDS | 35.0% | |
TCTACCACAAAGATAACTCA+AGG | + | chr2_4:50032594-50032613 | Msa0332760:CDS | 35.0% | |
AACACCTTGAGTTATCTTTG+TGG | - | chr2_4:50032601-50032620 | None:intergenic | 35.0% | |
ACAAAGATAACTCAAGGTGT+TGG | + | chr2_4:50032600-50032619 | Msa0332760:CDS | 35.0% | |
!! | AGCTAAAGTGAAGGCATTTG+GGG | - | chr2_4:50031598-50031617 | None:intergenic | 40.0% |
!! | GAGCTAAAGTGAAGGCATTT+GGG | - | chr2_4:50031599-50031618 | None:intergenic | 40.0% |
!! | AGAGCTAAAGTGAAGGCATT+TGG | - | chr2_4:50031600-50031619 | None:intergenic | 40.0% |
CATTCGAAGAGCTAAAGTGA+AGG | - | chr2_4:50031607-50031626 | None:intergenic | 40.0% | |
!! | CTTCACTTTAGCTCTTCGAA+TGG | + | chr2_4:50031605-50031624 | Msa0332760:CDS | 40.0% |
AAAGGCAACAACGCCTTTAT+TGG | - | chr2_4:50031781-50031800 | None:intergenic | 40.0% | |
!! | ATAAAGGCGTTGTTGCCTTT+AGG | + | chr2_4:50031781-50031800 | Msa0332760:CDS | 40.0% |
! | GCCTTTAGGTTACTCTCAAA+TGG | + | chr2_4:50031795-50031814 | Msa0332760:CDS | 40.0% |
!! | TCTACCAAAAGGGTATCTGT+TGG | - | chr2_4:50031876-50031895 | None:intergenic | 40.0% |
GGCTCCAAAACCAAACTATA+AGG | - | chr2_4:50031969-50031988 | None:intergenic | 40.0% | |
!!! | AGTTTGGTTTTGGAGCCTAA+AGG | + | chr2_4:50031972-50031991 | Msa0332760:CDS | 40.0% |
! | GTTGCCAATTCTACCACTTT+TGG | + | chr2_4:50032143-50032162 | Msa0332760:CDS | 40.0% |
! | CCAAATTTTCCACATCTCTC+TGG | - | chr2_4:50032344-50032363 | None:intergenic | 40.0% |
CCAGAGAGATGTGGAAAATT+TGG | + | chr2_4:50032341-50032360 | Msa0332760:CDS | 40.0% | |
GTTGGTTGTCCATTAGAGAA+TGG | + | chr2_4:50032386-50032405 | Msa0332760:CDS | 40.0% | |
GTTGAAAATACCACACACGT+GGG | + | chr2_4:50032653-50032672 | Msa0332760:CDS | 40.0% | |
CTTAATATAACCCACGTGTG+TGG | - | chr2_4:50032666-50032685 | None:intergenic | 40.0% | |
! | CACACACGTGGGTTATATTA+AGG | + | chr2_4:50032664-50032683 | Msa0332760:CDS | 40.0% |
!! | AGCTAAAGTGAAGGCATTTG+GGG | - | chr2_4:50031598-50031617 | None:intergenic | 40.0% |
!! | GAGCTAAAGTGAAGGCATTT+GGG | - | chr2_4:50031599-50031618 | None:intergenic | 40.0% |
!! | AGAGCTAAAGTGAAGGCATT+TGG | - | chr2_4:50031600-50031619 | None:intergenic | 40.0% |
CATTCGAAGAGCTAAAGTGA+AGG | - | chr2_4:50031607-50031626 | None:intergenic | 40.0% | |
!! | CTTCACTTTAGCTCTTCGAA+TGG | + | chr2_4:50031605-50031624 | Msa0332760:CDS | 40.0% |
AAAGGCAACAACGCCTTTAT+TGG | - | chr2_4:50031781-50031800 | None:intergenic | 40.0% | |
!! | ATAAAGGCGTTGTTGCCTTT+AGG | + | chr2_4:50031781-50031800 | Msa0332760:CDS | 40.0% |
! | GCCTTTAGGTTACTCTCAAA+TGG | + | chr2_4:50031795-50031814 | Msa0332760:CDS | 40.0% |
!! | TCTACCAAAAGGGTATCTGT+TGG | - | chr2_4:50031876-50031895 | None:intergenic | 40.0% |
GGCTCCAAAACCAAACTATA+AGG | - | chr2_4:50031969-50031988 | None:intergenic | 40.0% | |
!!! | AGTTTGGTTTTGGAGCCTAA+AGG | + | chr2_4:50031972-50031991 | Msa0332760:CDS | 40.0% |
! | GTTGCCAATTCTACCACTTT+TGG | + | chr2_4:50032143-50032162 | Msa0332760:CDS | 40.0% |
! | CCAAATTTTCCACATCTCTC+TGG | - | chr2_4:50032344-50032363 | None:intergenic | 40.0% |
CCAGAGAGATGTGGAAAATT+TGG | + | chr2_4:50032341-50032360 | Msa0332760:CDS | 40.0% | |
GTTGGTTGTCCATTAGAGAA+TGG | + | chr2_4:50032386-50032405 | Msa0332760:CDS | 40.0% | |
GTTGAAAATACCACACACGT+GGG | + | chr2_4:50032653-50032672 | Msa0332760:CDS | 40.0% | |
CTTAATATAACCCACGTGTG+TGG | - | chr2_4:50032666-50032685 | None:intergenic | 40.0% | |
! | CACACACGTGGGTTATATTA+AGG | + | chr2_4:50032664-50032683 | Msa0332760:CDS | 40.0% |
TCGAATGGGACTTCAACGAT+CGG | + | chr2_4:50031620-50031639 | Msa0332760:CDS | 45.0% | |
TATTTGCTTCCCATACCCAC+CGG | - | chr2_4:50031656-50031675 | None:intergenic | 45.0% | |
TGGGTATGGGAAGCAAATAG+AGG | + | chr2_4:50031657-50031676 | Msa0332760:CDS | 45.0% | |
!! | CTTGTGTTGGCTAATGCTGA+TGG | + | chr2_4:50031729-50031748 | Msa0332760:CDS | 45.0% |
!! | CCAAAAGGGTATCTGTTGGA+TGG | - | chr2_4:50031872-50031891 | None:intergenic | 45.0% |
! | CCATCCAACAGATACCCTTT+TGG | + | chr2_4:50031869-50031888 | Msa0332760:CDS | 45.0% |
!!! | GGTTTTGGAGCCTAAAGGTT+TGG | + | chr2_4:50031977-50031996 | Msa0332760:CDS | 45.0% |
TACTTCCTAGATGTGCGTAG+TGG | + | chr2_4:50032251-50032270 | Msa0332760:CDS | 45.0% | |
AAACACCACTACGCACATCT+AGG | - | chr2_4:50032259-50032278 | None:intergenic | 45.0% | |
TAGATGTGCGTAGTGGTGTT+TGG | + | chr2_4:50032258-50032277 | Msa0332760:CDS | 45.0% | |
TGTCAATTGCCAGAGAGATG+TGG | + | chr2_4:50032332-50032351 | Msa0332760:CDS | 45.0% | |
TGTAGTCCTAAGCCTTTAGG+AGG | + | chr2_4:50032431-50032450 | Msa0332760:CDS | 45.0% | |
CATACTCCTCCTAAAGGCTT+AGG | - | chr2_4:50032440-50032459 | None:intergenic | 45.0% | |
GCATTGCATACTCCTCCTAA+AGG | - | chr2_4:50032446-50032465 | None:intergenic | 45.0% | |
GGCAACACACTTACAATCCT+TGG | - | chr2_4:50032570-50032589 | None:intergenic | 45.0% | |
GGTTGAAAATACCACACACG+TGG | + | chr2_4:50032652-50032671 | Msa0332760:CDS | 45.0% | |
TCGAATGGGACTTCAACGAT+CGG | + | chr2_4:50031620-50031639 | Msa0332760:CDS | 45.0% | |
TATTTGCTTCCCATACCCAC+CGG | - | chr2_4:50031656-50031675 | None:intergenic | 45.0% | |
TGGGTATGGGAAGCAAATAG+AGG | + | chr2_4:50031657-50031676 | Msa0332760:CDS | 45.0% | |
!! | CTTGTGTTGGCTAATGCTGA+TGG | + | chr2_4:50031729-50031748 | Msa0332760:CDS | 45.0% |
!! | CCAAAAGGGTATCTGTTGGA+TGG | - | chr2_4:50031872-50031891 | None:intergenic | 45.0% |
! | CCATCCAACAGATACCCTTT+TGG | + | chr2_4:50031869-50031888 | Msa0332760:CDS | 45.0% |
!!! | GGTTTTGGAGCCTAAAGGTT+TGG | + | chr2_4:50031977-50031996 | Msa0332760:CDS | 45.0% |
TACTTCCTAGATGTGCGTAG+TGG | + | chr2_4:50032251-50032270 | Msa0332760:CDS | 45.0% | |
AAACACCACTACGCACATCT+AGG | - | chr2_4:50032259-50032278 | None:intergenic | 45.0% | |
TAGATGTGCGTAGTGGTGTT+TGG | + | chr2_4:50032258-50032277 | Msa0332760:CDS | 45.0% | |
TGTCAATTGCCAGAGAGATG+TGG | + | chr2_4:50032332-50032351 | Msa0332760:CDS | 45.0% | |
TGTAGTCCTAAGCCTTTAGG+AGG | + | chr2_4:50032431-50032450 | Msa0332760:CDS | 45.0% | |
CATACTCCTCCTAAAGGCTT+AGG | - | chr2_4:50032440-50032459 | None:intergenic | 45.0% | |
GCATTGCATACTCCTCCTAA+AGG | - | chr2_4:50032446-50032465 | None:intergenic | 45.0% | |
GGCAACACACTTACAATCCT+TGG | - | chr2_4:50032570-50032589 | None:intergenic | 45.0% | |
GGTTGAAAATACCACACACG+TGG | + | chr2_4:50032652-50032671 | Msa0332760:CDS | 45.0% | |
! | AACGATCGGAGCAGCTTTTC+CGG | + | chr2_4:50031634-50031653 | Msa0332760:CDS | 50.0% |
GCAAATAGAGGCAACCCAGT+TGG | + | chr2_4:50031669-50031688 | Msa0332760:CDS | 50.0% | |
!! | GGCAACCCAGTTGGTGAAAA+TGG | + | chr2_4:50031678-50031697 | Msa0332760:CDS | 50.0% |
GGCAACAACGCCTTTATTGG+AGG | - | chr2_4:50031778-50031797 | None:intergenic | 50.0% | |
! | AACGATCGGAGCAGCTTTTC+CGG | + | chr2_4:50031634-50031653 | Msa0332760:CDS | 50.0% |
GCAAATAGAGGCAACCCAGT+TGG | + | chr2_4:50031669-50031688 | Msa0332760:CDS | 50.0% | |
!! | GGCAACCCAGTTGGTGAAAA+TGG | + | chr2_4:50031678-50031697 | Msa0332760:CDS | 50.0% |
GGCAACAACGCCTTTATTGG+AGG | - | chr2_4:50031778-50031797 | None:intergenic | 50.0% | |
! | ATCGGAGCAGCTTTTCCGGT+GGG | + | chr2_4:50031638-50031657 | Msa0332760:CDS | 55.0% |
! | AGCAGCTTTTCCGGTGGGTA+TGG | + | chr2_4:50031643-50031662 | Msa0332760:CDS | 55.0% |
! | GCAGCTTTTCCGGTGGGTAT+GGG | + | chr2_4:50031644-50031663 | Msa0332760:CDS | 55.0% |
! | ATCGGAGCAGCTTTTCCGGT+GGG | + | chr2_4:50031638-50031657 | Msa0332760:CDS | 55.0% |
! | AGCAGCTTTTCCGGTGGGTA+TGG | + | chr2_4:50031643-50031662 | Msa0332760:CDS | 55.0% |
! | GCAGCTTTTCCGGTGGGTAT+GGG | + | chr2_4:50031644-50031663 | Msa0332760:CDS | 55.0% |
! | GATCGGAGCAGCTTTTCCGG+TGG | + | chr2_4:50031637-50031656 | Msa0332760:CDS | 60.0% |
! | GATCGGAGCAGCTTTTCCGG+TGG | + | chr2_4:50031637-50031656 | Msa0332760:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 50031384 | 50032700 | 50031384 | ID=Msa0332760;Name=Msa0332760 |
chr2_4 | mRNA | 50031384 | 50032700 | 50031384 | ID=Msa0332760-mRNA-1;Parent=Msa0332760;Name=Msa0332760-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|438 |
chr2_4 | exon | 50031384 | 50032700 | 50031384 | ID=Msa0332760-mRNA-1:exon:14945;Parent=Msa0332760-mRNA-1 |
chr2_4 | CDS | 50031384 | 50032700 | 50031384 | ID=Msa0332760-mRNA-1:cds;Parent=Msa0332760-mRNA-1 |
Gene Sequence |
Protein sequence |