AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1414780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414780 MtrunA17_Chr1g0178631 97.386 153 4 0 1 153 183 335 2.72e-108 311
Msa1414780 MtrunA17_Chr1g0178631 42.000 100 56 2 53 151 117 215 3.89e-18 79.3
Msa1414780 MtrunA17_Chr3g0077631 40.385 156 85 3 2 152 167 319 1.24e-30 112
Msa1414780 MtrunA17_Chr3g0077631 38.525 122 69 4 34 151 79 198 5.51e-16 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414780 AT5G03880.1 76.316 152 36 0 1 152 187 338 8.33e-85 252
Msa1414780 AT5G03880.1 42.708 96 54 1 57 151 124 219 5.49e-17 76.6
Msa1414780 AT4G10000.1 44.231 156 79 3 2 152 176 328 5.98e-34 121
Msa1414780 AT4G10000.1 39.506 81 48 1 72 151 127 207 4.97e-13 65.5
Msa1414780 AT4G10000.2 44.231 156 79 3 2 152 176 328 5.98e-34 121
Msa1414780 AT4G10000.2 39.506 81 48 1 72 151 127 207 4.97e-13 65.5

Find 58 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACCTTCGCACGAAAATT+TGG 0.131482 tig0024143:-10384 None:intergenic
AGACGAAATAATTAAGTATT+TGG 0.152096 tig0024143:+10766 Msa1414780:CDS
CTCTTTCTCATTTGTTTCTA+AGG 0.160569 tig0024143:+9086 Msa1414780:five_prime_UTR
CACCGAAGCCACTTAAATTA+TGG 0.171419 tig0024143:+11592 Msa1414780:CDS
CGAAAATTTGGGCCGTTTCT+TGG 0.207802 tig0024143:-10372 None:intergenic
ATTTAAATTGAGTATTAATT+AGG 0.227247 tig0024143:+12539 Msa1414780:three_prime_UTR
TAGAGAAATAGTTGCTGTTT+TGG 0.248195 tig0024143:+10323 Msa1414780:five_prime_UTR
GTCCATACCTTTCGACAAAA+TGG 0.270523 tig0024143:-10179 None:intergenic
AATTATGTTGTGTTGGCTTT+TGG 0.281439 tig0024143:-8974 None:intergenic
TGATATAGAATATTTCGTTT+TGG 0.299080 tig0024143:-12149 None:intergenic
AAGTATTTGGTTGGAACATA+TGG 0.302490 tig0024143:+10779 Msa1414780:CDS
TGGTTCACAGGTACCTTTCT+TGG 0.308769 tig0024143:+12290 Msa1414780:intron
CAACCTTCGCACGAAAATTT+GGG 0.318898 tig0024143:-10383 None:intergenic
GAAAATTTGGGCCGTTTCTT+GGG 0.320564 tig0024143:-10371 None:intergenic
TACATTGAAACGCCAGTGTT+TGG 0.321278 tig0024143:-10737 None:intergenic
AACATTTCTACACCAGTGTT+TGG 0.342818 tig0024143:-12318 None:intergenic
AATATTCTATATCAGAAAAC+TGG 0.378479 tig0024143:+12158 Msa1414780:CDS
TCAGAAAACTGGACATTTCC+AGG 0.380253 tig0024143:+12169 Msa1414780:CDS
ACATTGAAACGCCAGTGTTT+GGG 0.402036 tig0024143:-10736 None:intergenic
AGTTTAAAAGCATATTCATT+TGG 0.406017 tig0024143:-9120 None:intergenic
ACCGAAGCCACTTAAATTAT+GGG 0.408062 tig0024143:+11593 Msa1414780:CDS
TTCAAATTCATAGATCTCAA+TGG 0.411901 tig0024143:-9997 None:intergenic
ACGTGAAGTACTTGTGGAAT+TGG 0.413589 tig0024143:+11967 Msa1414780:CDS
GAAATAATTAAGTATTTGGT+TGG 0.416181 tig0024143:+10770 Msa1414780:CDS
GCCCATAATTTAAGTGGCTT+CGG 0.419173 tig0024143:-11594 None:intergenic
GGAGACAATCTTACCATGTA+AGG 0.426269 tig0024143:-10432 None:intergenic
TAGATCTCAATGGGCTTCTC+TGG 0.426617 tig0024143:-9987 None:intergenic
ATTCCTCTTACTTTATCGCT+TGG 0.434103 tig0024143:+11265 Msa1414780:CDS
TCAAATTCATAGATCTCAAT+GGG 0.434170 tig0024143:-9996 None:intergenic
GTAAAAGAAACATCAAAGAT+AGG 0.441714 tig0024143:+9957 Msa1414780:five_prime_UTR
TCATATGCCCATAATTTAAG+TGG 0.444995 tig0024143:-11600 None:intergenic
TTCTATCCTTGCCCAAGAAA+CGG 0.451827 tig0024143:+10360 Msa1414780:five_prime_UTR
AATCCAAGCGATAAAGTAAG+AGG 0.457533 tig0024143:-11268 None:intergenic
TTAAAAGCATATTCATTTGG+TGG 0.458779 tig0024143:-9117 None:intergenic
CGTGCGAAGGTTGTTGAGAT+GGG 0.462625 tig0024143:+10393 Msa1414780:exon
ACTTAAATTATGGGCATATG+AGG 0.464685 tig0024143:+11602 Msa1414780:CDS
TGTTATGTCTGTCTCTGTCT+TGG 0.477532 tig0024143:+12494 Msa1414780:three_prime_UTR
GCTTATAAATTATGTTGTGT+TGG 0.478959 tig0024143:-8981 None:intergenic
TCGTGCGAAGGTTGTTGAGA+TGG 0.480686 tig0024143:+10392 Msa1414780:exon
TAAAGTTACACAATGGTTTG+AGG 0.484867 tig0024143:+12622 Msa1414780:three_prime_UTR
GTGTTTGGATCTTCCAAGAA+AGG 0.490977 tig0024143:-12303 None:intergenic
GGCTTCGGTGGTAACTTCGC+TGG 0.508413 tig0024143:-11579 None:intergenic
TAAAACACAGTTCCCTTACA+TGG 0.513518 tig0024143:+10419 Msa1414780:CDS
TTTGGGCCGTTTCTTGGGCA+AGG 0.527655 tig0024143:-10366 None:intergenic
TTGAGATCTATGAATTTGAA+AGG 0.546792 tig0024143:+10000 Msa1414780:five_prime_UTR
AATCGTACGTGAAGTACTTG+TGG 0.549531 tig0024143:+11961 Msa1414780:CDS
CATAATTTAAGTGGCTTCGG+TGG 0.555497 tig0024143:-11591 None:intergenic
AAAATGATATTGACATGCAA+AGG 0.556582 tig0024143:-12395 None:intergenic
AAGGATAGAAAAGAATATCA+AGG 0.558191 tig0024143:-10347 None:intergenic
TTTCATTGTAGTTGTGCTAG+GGG 0.574387 tig0024143:+12122 Msa1414780:intron
TTCTTGGAAGATCCAAACAC+TGG 0.612315 tig0024143:+12306 Msa1414780:CDS
ACTTACTTGACAAGCAAATG+TGG 0.620078 tig0024143:-11995 None:intergenic
GAGACAATCTTACCATGTAA+GGG 0.623184 tig0024143:-10431 None:intergenic
TATGCTTGGTCGCATTACAA+AGG 0.624227 tig0024143:+11409 Msa1414780:CDS
TATTAGGTTGACCCAAACAC+TGG 0.638176 tig0024143:+10725 Msa1414780:intron
ATGAGAAAGAGTACCTGCAA+AGG 0.647700 tig0024143:-9074 None:intergenic
TCAACAATAAAGTTACACAA+TGG 0.664926 tig0024143:+12615 Msa1414780:three_prime_UTR
GCGAAGGTTGTTGAGATGGG+TGG 0.681372 tig0024143:+10396 Msa1414780:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATAAATTAAAAAAACT+CGG - tig0024143:9006-9025 None:intergenic 10.0%
!! AAAAAATTAAAATTTATGTC+AGG - tig0024143:9037-9056 None:intergenic 10.0%
!! AAAATACAAATTGTATATAA+CGG - tig0024143:9799-9818 None:intergenic 10.0%
!! TATACATTAATTTCAATATT+TGG + tig0024143:11477-11496 Msa1414780:intron 10.0%
!! ATTTAAATTGAGTATTAATT+AGG + tig0024143:12539-12558 Msa1414780:three_prime_UTR 10.0%
!! TCAAATAGTTATTAAATAAC+TGG + tig0024143:9351-9370 Msa1414780:intron 15.0%
!! TACAAAAAATAAATATTGAG+CGG - tig0024143:10039-10058 None:intergenic 15.0%
!!! GTAATTTTACATTAACAATA+TGG + tig0024143:10056-10075 Msa1414780:intron 15.0%
!!! ATTAAGAAATAACAATTTTC+TGG + tig0024143:10702-10721 Msa1414780:intron 15.0%
!! TATAACTTATAATCTAGTAA+TGG - tig0024143:11685-11704 None:intergenic 15.0%
!! ACTAAATTAAGAAATACATA+TGG - tig0024143:12039-12058 None:intergenic 15.0%
!!! ATTTCTTAATTTAGTCTTAT+TGG + tig0024143:12044-12063 Msa1414780:intron 15.0%
!!! AGTTTAAAAGCATATTCATT+TGG - tig0024143:9123-9142 None:intergenic 20.0%
!!! ACTTTTTGTACTTATGTTAA+TGG + tig0024143:9217-9236 Msa1414780:intron 20.0%
!! ACATCTATTGTATGTTAATT+AGG + tig0024143:9321-9340 Msa1414780:intron 20.0%
!! TTAATCAAAAAGCTAACAAA+AGG - tig0024143:9467-9486 None:intergenic 20.0%
!! TATAGCTAGTAATTTCATTT+GGG - tig0024143:9636-9655 None:intergenic 20.0%
!! AAATGAAAAATGAAATACAG+AGG - tig0024143:9881-9900 None:intergenic 20.0%
!! ACAAAAAATAAATATTGAGC+GGG - tig0024143:10038-10057 None:intergenic 20.0%
!! CTATTCTTTAATCTTCATAA+TGG - tig0024143:10099-10118 None:intergenic 20.0%
!!! TTGTTTTGTTGATTTTTTTG+AGG - tig0024143:10456-10475 None:intergenic 20.0%
!! AAAAATCAACAAAACAAAGT+TGG + tig0024143:10459-10478 Msa1414780:intron 20.0%
!!! AGTTTCTTGTTATGATTTTT+TGG + tig0024143:10483-10502 Msa1414780:intron 20.0%
!!! GTTTCTTGTTATGATTTTTT+GGG + tig0024143:10484-10503 Msa1414780:intron 20.0%
!! AATATTAAATAACCATCACA+AGG - tig0024143:10671-10690 None:intergenic 20.0%
!! TGTGATGGTTATTTAATATT+TGG + tig0024143:10671-10690 Msa1414780:intron 20.0%
!!! AATAACAATTTTCTGGTATT+AGG + tig0024143:10709-10728 Msa1414780:intron 20.0%
!! AGACGAAATAATTAAGTATT+TGG + tig0024143:10766-10785 Msa1414780:CDS 20.0%
!! GAAATAATTAAGTATTTGGT+TGG + tig0024143:10770-10789 Msa1414780:CDS 20.0%
!!! AATAACATGTGTTAGATTTT+AGG + tig0024143:10862-10881 Msa1414780:intron 20.0%
!!! AAGTTTTATAAGCTCTATTT+AGG + tig0024143:10930-10949 Msa1414780:intron 20.0%
!!! TTCATTGTTTTTGAAATTTC+AGG + tig0024143:11542-11561 Msa1414780:intron 20.0%
!!! TCATTGTTTTTGAAATTTCA+GGG + tig0024143:11543-11562 Msa1414780:intron 20.0%
!! CTAGATTATAAGTTATAGAT+TGG + tig0024143:11688-11707 Msa1414780:intron 20.0%
!!! GATATAGAATATTTCGTTTT+GGG - tig0024143:12151-12170 None:intergenic 20.0%
!!! TGATATAGAATATTTCGTTT+TGG - tig0024143:12152-12171 None:intergenic 20.0%
!! AATATTCTATATCAGAAAAC+TGG + tig0024143:12158-12177 Msa1414780:CDS 20.0%
!! ATGTGTATATTTGCATAAAA+TGG - tig0024143:12208-12227 None:intergenic 20.0%
!!! CTCAATTTAAATTTTACAAG+AGG - tig0024143:12531-12550 None:intergenic 20.0%
!! AGAAAAAAATGATCAAATAG+AGG + tig0024143:12581-12600 Msa1414780:three_prime_UTR 20.0%
! GCTTATAAATTATGTTGTGT+TGG - tig0024143:8984-9003 None:intergenic 25.0%
!! TTAAAAGCATATTCATTTGG+TGG - tig0024143:9120-9139 None:intergenic 25.0%
!! GAATATGCTTTTAAACTTTC+TGG + tig0024143:9126-9145 Msa1414780:five_prime_UTR 25.0%
! TGAGCATCAAAATAAAAGAA+TGG - tig0024143:9160-9179 None:intergenic 25.0%
!! ATGTTAATGGATAGATTACT+AGG + tig0024143:9230-9249 Msa1414780:intron 25.0%
!! TGTTAATGGATAGATTACTA+GGG + tig0024143:9231-9250 Msa1414780:intron 25.0%
!! TTAACAACTGTTGCTTATTA+TGG + tig0024143:9427-9446 Msa1414780:intron 25.0%
!! TAACAACTGTTGCTTATTAT+GGG + tig0024143:9428-9447 Msa1414780:intron 25.0%
! CTATAGCTAGTAATTTCATT+TGG - tig0024143:9637-9656 None:intergenic 25.0%
! CAAATGAAATTACTAGCTAT+AGG + tig0024143:9635-9654 Msa1414780:intron 25.0%
! AAAGCACAAAGTGATTAAAA+TGG - tig0024143:9666-9685 None:intergenic 25.0%
! GTAAAAGAAACATCAAAGAT+AGG + tig0024143:9957-9976 Msa1414780:five_prime_UTR 25.0%
! TCAAATTCATAGATCTCAAT+GGG - tig0024143:9999-10018 None:intergenic 25.0%
! TTCAAATTCATAGATCTCAA+TGG - tig0024143:10000-10019 None:intergenic 25.0%
! TTGAGATCTATGAATTTGAA+AGG + tig0024143:10000-10019 Msa1414780:five_prime_UTR 25.0%
! TTCTTTAATAATGTTCTTCG+TGG + tig0024143:10141-10160 Msa1414780:intron 25.0%
! AAGGATAGAAAAGAATATCA+AGG - tig0024143:10350-10369 None:intergenic 25.0%
!! ATACTCAATTCTGAAAAGTA+TGG - tig0024143:11031-11050 None:intergenic 25.0%
!! AGTATTTTACCACATACAAA+GGG + tig0024143:11046-11065 Msa1414780:intron 25.0%
!! GTATTTTTCTCACAATGTTA+TGG - tig0024143:11120-11139 None:intergenic 25.0%
!!! AGTAATTTCTAGAACCAATA+GGG - tig0024143:11167-11186 None:intergenic 25.0%
!! TTTATCGCTTGGATTTTTAA+CGG + tig0024143:11276-11295 Msa1414780:CDS 25.0%
!!! ATTAGTTTTTATCACCAGAA+AGG + tig0024143:11320-11339 Msa1414780:intron 25.0%
! ACTTATAATCTAGTAATGGT+TGG - tig0024143:11681-11700 None:intergenic 25.0%
! ATTTGACATACTTGAAAACA+TGG + tig0024143:11754-11773 Msa1414780:intron 25.0%
! ATTACAAAGTGGTTATATCA+AGG + tig0024143:11844-11863 Msa1414780:intron 25.0%
!! GTTATATCAAGGCTTTTTAT+AGG + tig0024143:11855-11874 Msa1414780:intron 25.0%
! AATGGAATCAATAAAATACC+TGG - tig0024143:12190-12209 None:intergenic 25.0%
! TTAATTCCGATGGTTAATTA+TGG + tig0024143:12270-12289 Msa1414780:intron 25.0%
! AAAATGATATTGACATGCAA+AGG - tig0024143:12398-12417 None:intergenic 25.0%
!!! TTCAGTAATTGATTTTTGTG+AGG + tig0024143:12444-12463 Msa1414780:three_prime_UTR 25.0%
!! TTTTACAAGAGGAAAAATGA+AGG - tig0024143:12520-12539 None:intergenic 25.0%
! TCAACAATAAAGTTACACAA+TGG + tig0024143:12615-12634 Msa1414780:three_prime_UTR 25.0%
!!! AATTATGTTGTGTTGGCTTT+TGG - tig0024143:8977-8996 None:intergenic 30.0%
!! CTCTTTCTCATTTGTTTCTA+AGG + tig0024143:9086-9105 Msa1414780:five_prime_UTR 30.0%
GCATCAAAATAAAAGAATGG+AGG - tig0024143:9157-9176 None:intergenic 30.0%
TTGAAAATACTGAACATCGA+TGG + tig0024143:9684-9703 Msa1414780:intron 30.0%
CCTTCTTAACATTAGTAATG+CGG + tig0024143:9920-9939 Msa1414780:intron 30.0%
TTTAATCTTCATAATGGCTG+TGG - tig0024143:10093-10112 None:intergenic 30.0%
TAATAATGTTCTTCGTGGAT+CGG + tig0024143:10146-10165 Msa1414780:intron 30.0%
! AGCAAACATTCTTTTTGTTG+TGG + tig0024143:10277-10296 Msa1414780:intron 30.0%
!!! GCTTAATATTTTGACTGTAC+AGG + tig0024143:10299-10318 Msa1414780:intron 30.0%
!!! TAGAGAAATAGTTGCTGTTT+TGG + tig0024143:10323-10342 Msa1414780:five_prime_UTR 30.0%
AAGTTAATGCAAAAACTAGC+CGG + tig0024143:10557-10576 Msa1414780:intron 30.0%
ATGGATTCATAAACAACAAC+CGG - tig0024143:10579-10598 None:intergenic 30.0%
AAGTATTTGGTTGGAACATA+TGG + tig0024143:10779-10798 Msa1414780:CDS 30.0%
CTATTTAGGTGATATCTTCT+AGG + tig0024143:10944-10963 Msa1414780:intron 30.0%
! CTCATACACATGTTGTTTAT+TGG - tig0024143:10993-11012 None:intergenic 30.0%
! GAGTATTTTACCACATACAA+AGG + tig0024143:11045-11064 Msa1414780:intron 30.0%
! GTATTTTACCACATACAAAG+GGG + tig0024143:11047-11066 Msa1414780:intron 30.0%
! TATTTTACCACATACAAAGG+GGG + tig0024143:11048-11067 Msa1414780:intron 30.0%
!! CAGTAATTTCTAGAACCAAT+AGG - tig0024143:11168-11187 None:intergenic 30.0%
!! CTATTGGTTCTAGAAATTAC+TGG + tig0024143:11166-11185 Msa1414780:intron 30.0%
! ACTCGCAATAGGATTATTTT+TGG - tig0024143:11206-11225 None:intergenic 30.0%
! AAACTAATGATAGTGATGTC+AGG - tig0024143:11308-11327 None:intergenic 30.0%
! TATTTCCCTTTGCTATGTAA+TGG + tig0024143:11444-11463 Msa1414780:intron 30.0%
TCATATGCCCATAATTTAAG+TGG - tig0024143:11603-11622 None:intergenic 30.0%
ACTTAAATTATGGGCATATG+AGG + tig0024143:11602-11621 Msa1414780:CDS 30.0%
GAATTCGTTCATTAAGCATT+AGG - tig0024143:11655-11674 None:intergenic 30.0%
TGAGTAAAGTGATTACAAAG+TGG + tig0024143:11833-11852 Msa1414780:intron 30.0%
ATCGATGATACGATTTATTC+AGG + tig0024143:11922-11941 Msa1414780:intron 30.0%
TCGATGATACGATTTATTCA+GGG + tig0024143:11923-11942 Msa1414780:intron 30.0%
! ATTTTCATTGTAGTTGTGCT+AGG + tig0024143:12120-12139 Msa1414780:intron 30.0%
! TTTTCATTGTAGTTGTGCTA+GGG + tig0024143:12121-12140 Msa1414780:intron 30.0%
TGTGAACCATAATTAACCAT+CGG - tig0024143:12279-12298 None:intergenic 30.0%
TAAAGTTACACAATGGTTTG+AGG + tig0024143:12622-12641 Msa1414780:three_prime_UTR 30.0%
! ATAATGTGCTACTGTGCTTT+GGG - tig0024143:9300-9319 None:intergenic 35.0%
CATGTTGTCTATGCATGAAA+AGG + tig0024143:9531-9550 Msa1414780:intron 35.0%
GGTTCCAAAGAAAATCTCTT+TGG + tig0024143:9552-9571 Msa1414780:intron 35.0%
! ACAGCCAAAGAGATTTTCTT+TGG - tig0024143:9559-9578 None:intergenic 35.0%
! ATCTCTTTGGCTGTCTTATT+TGG + tig0024143:9565-9584 Msa1414780:intron 35.0%
AATACTGAACATCGATGGTT+TGG + tig0024143:9689-9708 Msa1414780:intron 35.0%
!!! GTATTTCTGCTGTTTTAGTG+TGG + tig0024143:9755-9774 Msa1414780:intron 35.0%
CCGCATTACTAATGTTAAGA+AGG - tig0024143:9923-9942 None:intergenic 35.0%
AACATTAGTAATGCGGTTTC+AGG + tig0024143:9927-9946 Msa1414780:intron 35.0%
AATAATGTTCTTCGTGGATC+GGG + tig0024143:10147-10166 Msa1414780:intron 35.0%
!! GGTATGGACTATTGTTTTGT+AGG + tig0024143:10193-10212 Msa1414780:intron 35.0%
TAAAACACAGTTCCCTTACA+TGG + tig0024143:10419-10438 Msa1414780:CDS 35.0%
GAGACAATCTTACCATGTAA+GGG - tig0024143:10434-10453 None:intergenic 35.0%
TTTGGGCATCTTGAAATAGA+TGG + tig0024143:10501-10520 Msa1414780:intron 35.0%
TTGGGCATCTTGAAATAGAT+GGG + tig0024143:10502-10521 Msa1414780:intron 35.0%
TTGCTTATTACACCTTGTGA+TGG + tig0024143:10656-10675 Msa1414780:intron 35.0%
CTAACTCAACCCTACAAAAT+CGG + tig0024143:10886-10905 Msa1414780:intron 35.0%
!! TCTTACGAACCGATTTTGTA+GGG - tig0024143:10898-10917 None:intergenic 35.0%
!! ATCTTACGAACCGATTTTGT+AGG - tig0024143:10899-10918 None:intergenic 35.0%
!! CAAAATCGGTTCGTAAGATT+AGG + tig0024143:10900-10919 Msa1414780:intron 35.0%
! AGAGCATTAGTAATCCCTAT+TGG + tig0024143:11150-11169 Msa1414780:intron 35.0%
AATGTCAAAACACTCGCAAT+AGG - tig0024143:11217-11236 None:intergenic 35.0%
ACATTCATTATGTGTTCTGC+AGG + tig0024143:11232-11251 Msa1414780:intron 35.0%
ATTCCTCTTACTTTATCGCT+TGG + tig0024143:11265-11284 Msa1414780:CDS 35.0%
AATCCAAGCGATAAAGTAAG+AGG - tig0024143:11271-11290 None:intergenic 35.0%
AATGATACAGTTCACCTTTC+TGG - tig0024143:11337-11356 None:intergenic 35.0%
!!! TTTTTGCAGTCATTGACTTG+CGG + tig0024143:11380-11399 Msa1414780:intron 35.0%
ACCGAAGCCACTTAAATTAT+GGG + tig0024143:11593-11612 Msa1414780:CDS 35.0%
AAATTATGGGCATATGAGGT+TGG + tig0024143:11606-11625 Msa1414780:intron 35.0%
ATAATCTAGTAATGGTTGGC+TGG - tig0024143:11677-11696 None:intergenic 35.0%
ACTTACTTGACAAGCAAATG+TGG - tig0024143:11998-12017 None:intergenic 35.0%
TTTCATTGTAGTTGTGCTAG+GGG + tig0024143:12122-12141 Msa1414780:intron 35.0%
! CACGACATGGTATTTGTTAA+TGG + tig0024143:12241-12260 Msa1414780:intron 35.0%
ATGGATGATGTTAATTCCGA+TGG + tig0024143:12260-12279 Msa1414780:intron 35.0%
GATGGTTAATTATGGTTCAC+AGG + tig0024143:12278-12297 Msa1414780:intron 35.0%
AACATTTCTACACCAGTGTT+TGG - tig0024143:12321-12340 None:intergenic 35.0%
! TGATTTTTGTGAGGCTTATG+AGG + tig0024143:12453-12472 Msa1414780:three_prime_UTR 35.0%
! GATTTTTGTGAGGCTTATGA+GGG + tig0024143:12454-12473 Msa1414780:three_prime_UTR 35.0%
!!! TGTTGTGTTGGCTTTTGGAT+GGG - tig0024143:8972-8991 None:intergenic 40.0%
!!! ATGTTGTGTTGGCTTTTGGA+TGG - tig0024143:8973-8992 None:intergenic 40.0%
!! ATGAGAAAGAGTACCTGCAA+AGG - tig0024143:9077-9096 None:intergenic 40.0%
! TAATGTGCTACTGTGCTTTG+GGG - tig0024143:9299-9318 None:intergenic 40.0%
! GATAATGTGCTACTGTGCTT+TGG - tig0024143:9301-9320 None:intergenic 40.0%
TCGCATAACAGTGACTTAGA+CGG + tig0024143:9377-9396 Msa1414780:intron 40.0%
! GTCCATTTTGTCGAAAGGTA+TGG + tig0024143:10177-10196 Msa1414780:intron 40.0%
GTCCATACCTTTCGACAAAA+TGG - tig0024143:10182-10201 None:intergenic 40.0%
TTCTATCCTTGCCCAAGAAA+CGG + tig0024143:10360-10379 Msa1414780:five_prime_UTR 40.0%
GAAAATTTGGGCCGTTTCTT+GGG - tig0024143:10374-10393 None:intergenic 40.0%
CAACCTTCGCACGAAAATTT+GGG - tig0024143:10386-10405 None:intergenic 40.0%
ACAACCTTCGCACGAAAATT+TGG - tig0024143:10387-10406 None:intergenic 40.0%
GGAGACAATCTTACCATGTA+AGG - tig0024143:10435-10454 None:intergenic 40.0%
! AAGCAGTTTAGCTTAGTGAC+TGG - tig0024143:10532-10551 None:intergenic 40.0%
AATCGTTGTAAGATGCGAGA+TGG - tig0024143:10598-10617 None:intergenic 40.0%
!! TATTAGGTTGACCCAAACAC+TGG + tig0024143:10725-10744 Msa1414780:intron 40.0%
ACATTGAAACGCCAGTGTTT+GGG - tig0024143:10739-10758 None:intergenic 40.0%
TACATTGAAACGCCAGTGTT+TGG - tig0024143:10740-10759 None:intergenic 40.0%
AATGATTCCCCCTTTGTATG+TGG - tig0024143:11058-11077 None:intergenic 40.0%
TATGCTTGGTCGCATTACAA+AGG + tig0024143:11409-11428 Msa1414780:CDS 40.0%
! TCCCTTTGCTATGTAATGGA+AGG + tig0024143:11448-11467 Msa1414780:intron 40.0%
CCCTTCCATTACATAGCAAA+GGG - tig0024143:11452-11471 None:intergenic 40.0%
! CCCTTTGCTATGTAATGGAA+GGG + tig0024143:11449-11468 Msa1414780:intron 40.0%
TCCCTTCCATTACATAGCAA+AGG - tig0024143:11453-11472 None:intergenic 40.0%
CATAATTTAAGTGGCTTCGG+TGG - tig0024143:11594-11613 None:intergenic 40.0%
CACCGAAGCCACTTAAATTA+TGG + tig0024143:11592-11611 Msa1414780:CDS 40.0%
GCCCATAATTTAAGTGGCTT+CGG - tig0024143:11597-11616 None:intergenic 40.0%
TCATTAAGCATTAGGATGCG+TGG - tig0024143:11647-11666 None:intergenic 40.0%
CGATACAGTCAGTTACTTAC+TGG - tig0024143:11906-11925 None:intergenic 40.0%
! TCACGTACGATTTTGCAGAA+AGG - tig0024143:11953-11972 None:intergenic 40.0%
! AATCGTACGTGAAGTACTTG+TGG + tig0024143:11961-11980 Msa1414780:CDS 40.0%
! ACGTGAAGTACTTGTGGAAT+TGG + tig0024143:11967-11986 Msa1414780:CDS 40.0%
TCAGAAAACTGGACATTTCC+AGG + tig0024143:12169-12188 Msa1414780:CDS 40.0%
TCTTTACAAGCTTCACGACA+TGG + tig0024143:12228-12247 Msa1414780:intron 40.0%
GTGTTTGGATCTTCCAAGAA+AGG - tig0024143:12306-12325 None:intergenic 40.0%
TTCTTGGAAGATCCAAACAC+TGG + tig0024143:12306-12325 Msa1414780:CDS 40.0%
TGTTATGTCTGTCTCTGTCT+TGG + tig0024143:12494-12513 Msa1414780:three_prime_UTR 40.0%
!! GCTTTTTGTTGTGCCTTTGC+AGG + tig0024143:9061-9080 Msa1414780:five_prime_UTR 45.0%
TTTGGGGAAGTAACAGGGAT+TGG - tig0024143:9283-9302 None:intergenic 45.0%
!! TGTGCTTTGGGGAAGTAACA+GGG - tig0024143:9288-9307 None:intergenic 45.0%
CATAACAGTGACTTAGACGG+TGG + tig0024143:9380-9399 Msa1414780:intron 45.0%
! TAGATCTCAATGGGCTTCTC+TGG - tig0024143:9990-10009 None:intergenic 45.0%
! CAGCTGTCCATTTTGTCGAA+AGG + tig0024143:10172-10191 Msa1414780:intron 45.0%
CGAAAATTTGGGCCGTTTCT+TGG - tig0024143:10375-10394 None:intergenic 45.0%
ATTATGTGTTCTGCAGGCGA+TGG + tig0024143:11238-11257 Msa1414780:intron 45.0%
!! ACTTGCGGTTTTGCTATGCT+TGG + tig0024143:11395-11414 Msa1414780:CDS 45.0%
TGGTTCACAGGTACCTTTCT+TGG + tig0024143:12290-12309 Msa1414780:intron 45.0%
!! CTGTGCTTTGGGGAAGTAAC+AGG - tig0024143:9289-9308 None:intergenic 50.0%
TCGTGCGAAGGTTGTTGAGA+TGG + tig0024143:10392-10411 Msa1414780:exon 50.0%
CGTGCGAAGGTTGTTGAGAT+GGG + tig0024143:10393-10412 Msa1414780:exon 50.0%
! GATGCGTGGTTTGCATGTTG+TGG - tig0024143:11633-11652 None:intergenic 50.0%
TTTGGGCCGTTTCTTGGGCA+AGG - tig0024143:10369-10388 None:intergenic 55.0%
! CGGCCCAAATTTTCGTGCGA+AGG + tig0024143:10380-10399 Msa1414780:five_prime_UTR 55.0%
GCGAAGGTTGTTGAGATGGG+TGG + tig0024143:10396-10415 Msa1414780:exon 55.0%
GGCTTCGGTGGTAACTTCGC+TGG - tig0024143:11582-11601 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0024143 gene 8951 12661 8951 ID=Msa1414780;Name=Msa1414780
tig0024143 mRNA 8951 12661 8951 ID=Msa1414780-mRNA-1;Parent=Msa1414780;Name=Msa1414780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=379|1|1|1|1|1|11|272|153
tig0024143 exon 8951 9147 8951 ID=Msa1414780-mRNA-1:exon:21974;Parent=Msa1414780-mRNA-1
tig0024143 exon 9949 10021 9949 ID=Msa1414780-mRNA-1:exon:21975;Parent=Msa1414780-mRNA-1
tig0024143 exon 10175 10193 10175 ID=Msa1414780-mRNA-1:exon:21976;Parent=Msa1414780-mRNA-1
tig0024143 exon 10321 10440 10321 ID=Msa1414780-mRNA-1:exon:21977;Parent=Msa1414780-mRNA-1
tig0024143 exon 10731 10800 10731 ID=Msa1414780-mRNA-1:exon:21978;Parent=Msa1414780-mRNA-1
tig0024143 exon 11254 11297 11254 ID=Msa1414780-mRNA-1:exon:21979;Parent=Msa1414780-mRNA-1
tig0024143 exon 11389 11430 11389 ID=Msa1414780-mRNA-1:exon:21980;Parent=Msa1414780-mRNA-1
tig0024143 exon 11564 11623 11564 ID=Msa1414780-mRNA-1:exon:21981;Parent=Msa1414780-mRNA-1
tig0024143 exon 11944 12011 11944 ID=Msa1414780-mRNA-1:exon:21982;Parent=Msa1414780-mRNA-1
tig0024143 exon 12133 12190 12133 ID=Msa1414780-mRNA-1:exon:21983;Parent=Msa1414780-mRNA-1
tig0024143 exon 12300 12661 12300 ID=Msa1414780-mRNA-1:exon:21984;Parent=Msa1414780-mRNA-1
tig0024143 five_prime_UTR 8951 9147 8951 ID=Msa1414780-mRNA-1:five_prime_utr;Parent=Msa1414780-mRNA-1
tig0024143 five_prime_UTR 9949 10021 9949 ID=Msa1414780-mRNA-1:five_prime_utr;Parent=Msa1414780-mRNA-1
tig0024143 five_prime_UTR 10175 10193 10175 ID=Msa1414780-mRNA-1:five_prime_utr;Parent=Msa1414780-mRNA-1
tig0024143 five_prime_UTR 10321 10410 10321 ID=Msa1414780-mRNA-1:five_prime_utr;Parent=Msa1414780-mRNA-1
tig0024143 CDS 10411 10440 10411 ID=Msa1414780-mRNA-1:cds;Parent=Msa1414780-mRNA-1
tig0024143 CDS 10731 10800 10731 ID=Msa1414780-mRNA-1:cds;Parent=Msa1414780-mRNA-1
tig0024143 CDS 11254 11297 11254 ID=Msa1414780-mRNA-1:cds;Parent=Msa1414780-mRNA-1
tig0024143 CDS 11389 11430 11389 ID=Msa1414780-mRNA-1:cds;Parent=Msa1414780-mRNA-1
tig0024143 CDS 11564 11623 11564 ID=Msa1414780-mRNA-1:cds;Parent=Msa1414780-mRNA-1
tig0024143 CDS 11944 12011 11944 ID=Msa1414780-mRNA-1:cds;Parent=Msa1414780-mRNA-1
tig0024143 CDS 12133 12190 12133 ID=Msa1414780-mRNA-1:cds;Parent=Msa1414780-mRNA-1
tig0024143 CDS 12300 12389 12300 ID=Msa1414780-mRNA-1:cds;Parent=Msa1414780-mRNA-1
tig0024143 three_prime_UTR 12390 12661 12390 ID=Msa1414780-mRNA-1:three_prime_utr;Parent=Msa1414780-mRNA-1
Gene Sequence

>Msa1414780

ATGGGTGGTAAAACACAGTTCCCTTACATGGTTGACCCAAACACTGGCGTTTCAATGTATGAATCAGACGAAATAATTAAGTATTTGGTTGGAACATATGGCGATGGAAACATTCCTCTTACTTTATCGCTTGGATTTTTAACGTCATTGACTTGCGGTTTTGCTATGCTTGGTCGCATTACAAAGGGAACATCATATACTCCAGCGAAGTTACCACCGAAGCCACTTAAATTATGGGCATATGAGGGATCTCCTTTCTGCAAAATCGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACATTTGCTTGTCAATTGTGCTAGGGGTAGCCCAAAACGAAATATTCTATATCAGAAAACTGGACATTTCCAGGTACCTTTCTTGGAAGATCCAAACACTGGTGTAGAAATGTTTGAGAGTGCAGAAATTATAGAGTACATTAGAGCAACTTACACTCTTTAG

Protein sequence

>Msa1414780

MGGKTQFPYMVDPNTGVSMYESDEIIKYLVGTYGDGNIPLTLSLGFLTSLTCGFAMLGRITKGTSYTPAKLPPKPLKLWAYEGSPFCKIVREVLVELELPHLLVNCARGSPKRNILYQKTGHFQVPFLEDPNTGVEMFESAEIIEYIRATYTL*