AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1156120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156120 MtrunA17_Chr7g0249461 97.312 186 5 0 1 186 1 186 2.20e-130 363
Msa1156120 MtrunA17_Chr5g0404831 37.736 106 62 2 79 181 8 112 2.32e-18 76.6
Msa1156120 MtrunA17_Chr1g0155721 40.000 105 59 2 79 180 6 109 3.90e-17 73.6
Msa1156120 MtrunA17_Chr3g0142051 42.683 82 46 1 99 180 29 109 6.45e-16 70.5
Msa1156120 MtrunA17_Chr7g0216481 39.744 78 46 1 99 176 49 125 2.88e-15 68.9
Msa1156120 MtrunA17_Chr3g0125821 32.867 143 77 6 34 171 31 159 1.75e-13 65.5
Msa1156120 MtrunA17_Chr8g0334481 36.905 84 51 2 94 176 43 125 3.05e-13 63.9
Msa1156120 MtrunA17_Chr7g0245141 39.744 78 46 1 99 176 47 123 7.52e-12 60.1
Msa1156120 MtrunA17_Chr6g0488561 33.824 68 44 1 93 160 90 156 3.17e-11 60.1
Msa1156120 MtrunA17_Chr8g0393201 43.836 73 40 1 99 171 250 321 4.91e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156120 AT5G16400.1 81.679 131 22 1 56 186 57 185 7.69e-73 218
Msa1156120 AT3G02730.1 63.587 184 56 3 4 186 2 175 5.39e-72 215
Msa1156120 AT3G51030.1 44.737 76 41 1 101 176 31 105 7.17e-17 73.2
Msa1156120 AT5G42980.1 37.975 79 48 1 99 177 28 105 4.25e-16 71.2
Msa1156120 AT5G39950.1 38.202 89 52 2 98 185 47 133 8.66e-16 70.9
Msa1156120 AT1G45145.1 35.897 78 49 1 99 176 28 104 1.74e-15 69.7
Msa1156120 AT1G19730.1 34.314 102 62 4 79 176 6 106 3.95e-15 68.6
Msa1156120 AT1G59730.1 31.707 123 76 3 65 184 11 128 7.13e-13 63.2
Msa1156120 AT4G26160.1 33.673 98 61 3 87 181 102 198 3.05e-12 63.2
Msa1156120 AT4G29670.2 32.432 74 49 1 87 160 112 184 2.66e-11 60.8
Msa1156120 AT1G69880.1 37.209 86 51 2 93 176 52 136 3.39e-11 58.9
Msa1156120 AT4G29670.1 32.432 74 49 1 87 160 112 184 3.52e-11 60.5
Msa1156120 AT3G08710.2 35.897 78 49 1 99 176 46 122 4.30e-11 58.5
Msa1156120 AT3G08710.3 35.897 78 49 1 99 176 46 122 4.30e-11 58.5
Msa1156120 AT3G08710.1 35.897 78 49 1 99 176 46 122 4.30e-11 58.5

Find 98 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTAATTCTTTGTATTT+TGG 0.153277 7_4:-44349873 None:intergenic
GCCATCCCAAAGTGTATTTC+TGG 0.177064 7_4:+44350586 Msa1156120:three_prime_UTR
AGAATTAGCTGAGAAGTATT+TGG 0.241894 7_4:+44349884 Msa1156120:CDS
AACACTCTTGGAATTCAAAA+TGG 0.249767 7_4:-44347656 None:intergenic
ATCTCTGCACCTCCCCTAAA+TGG 0.258474 7_4:+44347551 Msa1156120:CDS
CCTAATGTACATGGGTATTA+TGG 0.259369 7_4:+44350467 Msa1156120:three_prime_UTR
CACCTTAATTCCTAGCTCTT+TGG 0.269465 7_4:-44350044 None:intergenic
ACGGTTGTGCCAATCCATTT+AGG 0.300563 7_4:-44347565 None:intergenic
TAATCCATACCTTGTTATCT+TGG 0.303298 7_4:-44349935 None:intergenic
TCATTAAGTGTATGGTGTTT+TGG 0.304234 7_4:-44350496 None:intergenic
CGGTTGTGCCAATCCATTTA+GGG 0.330646 7_4:-44347564 None:intergenic
TGGAGCTAAATATGATGATT+TGG 0.335332 7_4:+44350117 Msa1156120:CDS
GGCCAAAGAGCTAGGAATTA+AGG 0.347175 7_4:+44350042 Msa1156120:CDS
TGATCATGGTCTATCTATAA+AGG 0.357562 7_4:+44350361 Msa1156120:three_prime_UTR
CGTTAATATGAGGGTGGAAT+TGG 0.376541 7_4:-44347377 None:intergenic
CCATAATACCCATGTACATT+AGG 0.379105 7_4:-44350467 None:intergenic
GATTGTGTATGATATTCTTT+TGG 0.384247 7_4:-44347319 None:intergenic
TTGTCCAGCCGGAATGATCT+TGG 0.396843 7_4:-44350549 None:intergenic
TTGCCCTTGGAGTTTGTGTA+TGG 0.405123 7_4:-44347412 None:intergenic
TTCTGTTATCAACTTGATCA+TGG 0.406946 7_4:+44350347 Msa1156120:three_prime_UTR
AAGGTTGTAAAAGAAGTAAC+TGG 0.408021 7_4:+44350097 Msa1156120:CDS
GCTCTTGAGATTAACACTCT+TGG 0.426875 7_4:-44347668 None:intergenic
TGTCCAGCCGGAATGATCTT+GGG 0.431711 7_4:-44350548 None:intergenic
AATTCCTAGCTCTTTGGCCA+AGG 0.431968 7_4:-44350038 None:intergenic
TCTCGCACCCAAGATCATTC+CGG 0.433558 7_4:+44350541 Msa1156120:three_prime_UTR
GATGTGAAGAGGAGGAAGAG+TGG 0.442221 7_4:-44347458 None:intergenic
GCATGTGGAGAGTGAAGAAT+TGG 0.443078 7_4:-44347510 None:intergenic
ATTGGTAAATTTGAATGAAA+CGG 0.444192 7_4:-44347359 None:intergenic
CAAGGGATACCTAATGTACA+TGG 0.446648 7_4:+44350458 Msa1156120:three_prime_UTR
GAATTGGACTCTCTGAGATA+TGG 0.447692 7_4:-44347494 None:intergenic
TTGTTGCGGTCGTTAATATG+AGG 0.450430 7_4:-44347387 None:intergenic
TTCGTCCAGAAATACACTTT+GGG 0.462223 7_4:-44350591 None:intergenic
AGATCAAGCTTGGAAACTAC+TGG 0.466349 7_4:+44347724 Msa1156120:CDS
GCATCCAATTATGTAAAAGA+AGG 0.469447 7_4:+44347280 Msa1156120:five_prime_UTR
TTTCGTCCAGAAATACACTT+TGG 0.473177 7_4:-44350592 None:intergenic
ATGTGAAGAGGAGGAAGAGT+GGG 0.484769 7_4:-44347457 None:intergenic
ATTCCTAGCTCTTTGGCCAA+GGG 0.487064 7_4:-44350037 None:intergenic
AGATTAAGAGCCATTGGTGT+TGG 0.490679 7_4:-44347532 None:intergenic
GCTAGACGTCATTAAGTGTA+TGG 0.499786 7_4:-44350504 None:intergenic
TTTCTGTGTAAGATCAAGCT+TGG 0.505371 7_4:+44347714 Msa1156120:CDS
CAGCCCTTGGCCAAAGAGCT+AGG 0.508539 7_4:+44350034 Msa1156120:intron
GCTAGAACGAACTGTGTCAA+TGG 0.511358 7_4:-44350146 None:intergenic
ATTGATTATTCCCTATGCAT+AGG 0.511444 7_4:+44350304 Msa1156120:three_prime_UTR
TTTGGAGCTATCACTTTGCA+AGG 0.518801 7_4:-44349855 None:intergenic
TTGATTATTCCCTATGCATA+GGG 0.522813 7_4:+44350305 Msa1156120:three_prime_UTR
ACTGGACCCACCGTGACGGT+TGG 0.528971 7_4:+44347742 Msa1156120:CDS
GAGATATGGTCGTGTGGTGG+TGG 0.529036 7_4:-44347480 None:intergenic
AGCTTAAGCTTGAGGAAGAG+TGG 0.529887 7_4:+44347688 Msa1156120:CDS
ATCTCAAGAGCTTAAGCTTG+AGG 0.533549 7_4:+44347680 Msa1156120:CDS
TGAAATGACGGTGTTGCCCT+TGG 0.535828 7_4:-44347425 None:intergenic
TGCACCTCCCCTAAATGGAT+TGG 0.536322 7_4:+44347556 Msa1156120:CDS
GTGCAGAGATTAAGAGCCAT+TGG 0.539401 7_4:-44347538 None:intergenic
GTGTGGTGGTGGATGTGAAG+AGG 0.557719 7_4:-44347469 None:intergenic
TCACCGGCGGCATTAACGAT+GGG 0.558656 7_4:-44347799 None:intergenic
ATCACCGGCGGCATTAACGA+TGG 0.564737 7_4:-44347800 None:intergenic
GCTTAAGCTTGAGGAAGAGT+GGG 0.565601 7_4:+44347689 Msa1156120:CDS
GCACCCAAGATCATTCCGGC+TGG 0.567036 7_4:+44350545 Msa1156120:three_prime_UTR
CATCCAATTATGTAAAAGAA+GGG 0.571110 7_4:+44347281 Msa1156120:five_prime_UTR
TGCATTAGAAATACTTACAG+AGG 0.576470 7_4:-44350222 None:intergenic
AAGTTAACAAGGATACGTTC+TGG 0.581922 7_4:+44347776 Msa1156120:CDS
TCTCCACATGCCAACACCAA+TGG 0.584573 7_4:+44347522 Msa1156120:exon
TCCAGAAATACACTTTGGGA+TGG 0.585187 7_4:-44350587 None:intergenic
CACTTAATGACGTCTAGCAA+CGG 0.587444 7_4:+44350509 Msa1156120:three_prime_UTR
TCTTCATCGAAGCTATCACT+TGG 0.591272 7_4:+44347601 Msa1156120:CDS
GAGCCATTGGTGTTGGCATG+TGG 0.594989 7_4:-44347525 None:intergenic
TGTTGCGGTCGTTAATATGA+GGG 0.597154 7_4:-44347386 None:intergenic
AACTACTGGACCCACCGTGA+CGG 0.599683 7_4:+44347738 Msa1156120:CDS
AAATTGAGTCAGTGCTGTCA+AGG 0.600393 7_4:+44350440 Msa1156120:three_prime_UTR
CTCTCTGAGATATGGTCGTG+TGG 0.615715 7_4:-44347486 None:intergenic
TCCTCGACATGTACACCCAA+TGG 0.618148 7_4:+44347833 Msa1156120:CDS
GGTGTACATGTCGAGGACGA+CGG 0.623867 7_4:-44347827 None:intergenic
GCATTAGAAATACTTACAGA+GGG 0.629622 7_4:-44350221 None:intergenic
AATTGAGTCAGTGCTGTCAA+GGG 0.630402 7_4:+44350441 Msa1156120:three_prime_UTR
TGCGGTCGTTAATATGAGGG+TGG 0.630527 7_4:-44347383 None:intergenic
TAAAATTCTGAAAGACAACA+AGG 0.632667 7_4:+44350078 Msa1156120:CDS
GGGAGTTATGAATGAAATGA+CGG 0.633006 7_4:-44347437 None:intergenic
ACCATTGGGTGTACATGTCG+AGG 0.633123 7_4:-44347834 None:intergenic
GTTTGTGTATGGTATTGTTG+CGG 0.634269 7_4:-44347401 None:intergenic
ACAAGTTACTGAAGTTAACA+AGG 0.643513 7_4:+44347765 Msa1156120:CDS
TGTGCCAATCCATTTAGGGG+AGG 0.643551 7_4:-44347560 None:intergenic
TGAAGAAGTACTATCGAAGA+CGG 0.645716 7_4:-44347584 None:intergenic
GGTTGTGCCAATCCATTTAG+GGG 0.646061 7_4:-44347563 None:intergenic
AATACCATACACAAACTCCA+AGG 0.658663 7_4:+44347408 Msa1156120:five_prime_UTR
AGTAACTTGTCCAACCGTCA+CGG 0.658820 7_4:-44347752 None:intergenic
AACTTGTCCAACCGTCACGG+TGG 0.660548 7_4:-44347749 None:intergenic
ACTTGTCCAACCGTCACGGT+GGG 0.662430 7_4:-44347748 None:intergenic
TCTGAGATATGGTCGTGTGG+TGG 0.667266 7_4:-44347483 None:intergenic
ATACCATACACAAACTCCAA+GGG 0.668173 7_4:+44347409 Msa1156120:five_prime_UTR
TGGTGGTGGATGTGAAGAGG+AGG 0.669679 7_4:-44347466 None:intergenic
CAAAGAGCTAGGAATTAAGG+TGG 0.670646 7_4:+44350045 Msa1156120:CDS
TGATTGCAACCAAGATAACA+AGG 0.674067 7_4:+44349926 Msa1156120:CDS
AAGGGATACCTAATGTACAT+GGG 0.679919 7_4:+44350459 Msa1156120:three_prime_UTR
TGCAATTGTAAGCTGCTGAG+TGG 0.681997 7_4:+44350241 Msa1156120:three_prime_UTR
TCATGGTCTATCTATAAAGG+TGG 0.684533 7_4:+44350364 Msa1156120:three_prime_UTR
TACAGCTTACAACAACAACA+TGG 0.685248 7_4:-44350281 None:intergenic
ATTCCGGCTGGACAAAACAC+AGG 0.688292 7_4:+44350557 Msa1156120:three_prime_UTR
TTAATGACGTCTAGCAACGG+AGG 0.698236 7_4:+44350512 Msa1156120:three_prime_UTR
AAGCTGCTGAGTGGAAGATG+AGG 0.731291 7_4:+44350250 Msa1156120:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCATTAGTTTTTTAAAA+AGG + chr7_4:44349532-44349551 Msa1156120:intron 10.0%
!!! TTTCATTAGTTTTTTAAAAA+GGG + chr7_4:44349533-44349552 Msa1156120:intron 10.0%
!! ATGAAATAAAATATACCATT+GGG - chr7_4:44347851-44347870 None:intergenic 15.0%
!! AATGAAATAAAATATACCAT+TGG - chr7_4:44347852-44347871 None:intergenic 15.0%
!! GCATTGTATATTAAAATATA+AGG - chr7_4:44349048-44349067 None:intergenic 15.0%
!! GATAAAAAGATTAATTGATT+TGG + chr7_4:44349595-44349614 Msa1156120:intron 15.0%
!! ATTGGTAAATTTGAATGAAA+CGG - chr7_4:44347362-44347381 None:intergenic 20.0%
!! TTCATGATAAGAATAGTTAA+TGG - chr7_4:44347900-44347919 None:intergenic 20.0%
!! ATCATTAATTTACCTAAGTT+TGG - chr7_4:44348225-44348244 None:intergenic 20.0%
!!! ATGATTTGGTAAACTATAAT+TGG + chr7_4:44348420-44348439 Msa1156120:intron 20.0%
!!! AAAAGGTTTTTTCTAAACTA+AGG + chr7_4:44348840-44348859 Msa1156120:intron 20.0%
!!! AAAGGTTTTTTCTAAACTAA+GGG + chr7_4:44348841-44348860 Msa1156120:intron 20.0%
!!! TTTTAATTGTGAAACAATCA+AGG + chr7_4:44348889-44348908 Msa1156120:intron 20.0%
!! TTTAATTGTGAAACAATCAA+GGG + chr7_4:44348890-44348909 Msa1156120:intron 20.0%
!!! TACTAAAGTACTTATTTTGT+AGG + chr7_4:44349145-44349164 Msa1156120:intron 20.0%
!! CAATTAAACATCATACTTAT+CGG + chr7_4:44349243-44349262 Msa1156120:intron 20.0%
!! CTAAATATAAAGTGTAGATT+TGG + chr7_4:44349790-44349809 Msa1156120:intron 20.0%
!!! TCTTTCAGAATTTTAAAAGT+GGG - chr7_4:44350073-44350092 None:intergenic 20.0%
!!! TGATATTTTTACATAGCAAA+GGG - chr7_4:44350192-44350211 None:intergenic 20.0%
!!! ATGATATTTTTACATAGCAA+AGG - chr7_4:44350193-44350212 None:intergenic 20.0%
! CATCCAATTATGTAAAAGAA+GGG + chr7_4:44347281-44347300 Msa1156120:five_prime_UTR 25.0%
!! GATTGTGTATGATATTCTTT+TGG - chr7_4:44347322-44347341 None:intergenic 25.0%
! AGCTTATGCTAATATCATTA+AGG + chr7_4:44348288-44348307 Msa1156120:intron 25.0%
!! CGTTCTCTAAATATGTTTTA+TGG + chr7_4:44348371-44348390 Msa1156120:intron 25.0%
!! TTTTAGCAAGCAATATGATT+TGG + chr7_4:44348406-44348425 Msa1156120:intron 25.0%
! TCATAAAGCACAATTGAAAA+CGG - chr7_4:44348671-44348690 None:intergenic 25.0%
! TACATTATATGATGAAGAGT+GGG + chr7_4:44348817-44348836 Msa1156120:intron 25.0%
!!! AAGGTTTTTTCTAAACTAAG+GGG + chr7_4:44348842-44348861 Msa1156120:intron 25.0%
!! GATATATGCATAAAAGGTTT+TGG - chr7_4:44348933-44348952 None:intergenic 25.0%
!!! GTGTTATTGACTTATGTTTT+AGG + chr7_4:44349318-44349337 Msa1156120:intron 25.0%
! TAAACTCAAAAATCAATCTC+TGG + chr7_4:44349693-44349712 Msa1156120:intron 25.0%
! TTCATTGTAAATCATATCCA+AGG - chr7_4:44349820-44349839 None:intergenic 25.0%
!! TGATTTACAATGAATTTTGC+AGG + chr7_4:44349826-44349845 Msa1156120:intron 25.0%
!! TCAGCTAATTCTTTGTATTT+TGG - chr7_4:44349876-44349895 None:intergenic 25.0%
! ACATAGTGTTTAATGGTTAT+TGG + chr7_4:44350011-44350030 Msa1156120:intron 25.0%
!!! GTCTTTCAGAATTTTAAAAG+TGG - chr7_4:44350074-44350093 None:intergenic 25.0%
!! TAAAATTCTGAAAGACAACA+AGG + chr7_4:44350078-44350097 Msa1156120:CDS 25.0%
GCATCCAATTATGTAAAAGA+AGG + chr7_4:44347280-44347299 Msa1156120:five_prime_UTR 30.0%
! TGACCCTTCTTTTACATAAT+TGG - chr7_4:44347287-44347306 None:intergenic 30.0%
AACACTCTTGGAATTCAAAA+TGG - chr7_4:44347659-44347678 None:intergenic 30.0%
ACAAGTTACTGAAGTTAACA+AGG + chr7_4:44347765-44347784 Msa1156120:CDS 30.0%
TAAGATGCTAATAGACTCTA+AGG + chr7_4:44348026-44348045 Msa1156120:intron 30.0%
GATATCGATGTATCTTTATC+AGG - chr7_4:44348195-44348214 None:intergenic 30.0%
ATATCTATTCGACCAAACTT+AGG + chr7_4:44348210-44348229 Msa1156120:intron 30.0%
GTTGAGTAAAACAGAAAACA+GGG - chr7_4:44348508-44348527 None:intergenic 30.0%
!!! CGTTACTAGTTACTTTTACT+TGG + chr7_4:44348537-44348556 Msa1156120:intron 30.0%
!!! TAGTTTTGTGACTTGATTGT+TGG + chr7_4:44348609-44348628 Msa1156120:intron 30.0%
ATAAAGCACAATTGAAAACG+GGG - chr7_4:44348669-44348688 None:intergenic 30.0%
CATAAAGCACAATTGAAAAC+GGG - chr7_4:44348670-44348689 None:intergenic 30.0%
ATCGTATCTCTATATAAGTG+AGG + chr7_4:44348762-44348781 Msa1156120:intron 30.0%
! GTTTAAGACAAATCTCTTCA+AGG + chr7_4:44348784-44348803 Msa1156120:intron 30.0%
GTACATTATATGATGAAGAG+TGG + chr7_4:44348816-44348835 Msa1156120:intron 30.0%
TTCTAAACTAAGGGGTTTAT+TGG + chr7_4:44348850-44348869 Msa1156120:intron 30.0%
TGCATGGATATATGCATAAA+AGG - chr7_4:44348939-44348958 None:intergenic 30.0%
ATATACAATGCCTGAATTTG+AGG + chr7_4:44349057-44349076 Msa1156120:intron 30.0%
! CTTCTTTTTACCTCAAATTC+AGG - chr7_4:44349070-44349089 None:intergenic 30.0%
! GAATTTGAGGTAAAAAGAAG+AGG + chr7_4:44349070-44349089 Msa1156120:intron 30.0%
AAAAAGAAGAGGTAATTCAC+TGG + chr7_4:44349081-44349100 Msa1156120:intron 30.0%
TTTGTAGGCTGAATATCAAA+AGG + chr7_4:44349160-44349179 Msa1156120:intron 30.0%
GATGTTTAATTGTATGCCAA+AGG - chr7_4:44349235-44349254 None:intergenic 30.0%
AAACTAATGAAATGATCAGC+TGG - chr7_4:44349525-44349544 None:intergenic 30.0%
CATGATCCTTATAATAGTCA+TGG - chr7_4:44349732-44349751 None:intergenic 30.0%
ACACTTTATATTTAGCAGCA+GGG - chr7_4:44349785-44349804 None:intergenic 30.0%
TACACTTTATATTTAGCAGC+AGG - chr7_4:44349786-44349805 None:intergenic 30.0%
!! AGAATTAGCTGAGAAGTATT+TGG + chr7_4:44349884-44349903 Msa1156120:CDS 30.0%
! TAATCCATACCTTGTTATCT+TGG - chr7_4:44349938-44349957 None:intergenic 30.0%
ACTGAATAGTAGATAGTCTA+TGG + chr7_4:44349966-44349985 Msa1156120:intron 30.0%
TAACCATTAAACACTATGTC+AGG - chr7_4:44350010-44350029 None:intergenic 30.0%
AAGGTTGTAAAAGAAGTAAC+TGG + chr7_4:44350097-44350116 Msa1156120:CDS 30.0%
TGGAGCTAAATATGATGATT+TGG + chr7_4:44350117-44350136 Msa1156120:CDS 30.0%
GCATTAGAAATACTTACAGA+GGG - chr7_4:44350224-44350243 None:intergenic 30.0%
TGCATTAGAAATACTTACAG+AGG - chr7_4:44350225-44350244 None:intergenic 30.0%
ATTGATTATTCCCTATGCAT+AGG + chr7_4:44350304-44350323 Msa1156120:three_prime_UTR 30.0%
TTGATTATTCCCTATGCATA+GGG + chr7_4:44350305-44350324 Msa1156120:three_prime_UTR 30.0%
TTCTGTTATCAACTTGATCA+TGG + chr7_4:44350347-44350366 Msa1156120:three_prime_UTR 30.0%
TGATCATGGTCTATCTATAA+AGG + chr7_4:44350361-44350380 Msa1156120:three_prime_UTR 30.0%
! TCATTAAGTGTATGGTGTTT+TGG - chr7_4:44350499-44350518 None:intergenic 30.0%
GTTTGTGTATGGTATTGTTG+CGG - chr7_4:44347404-44347423 None:intergenic 35.0%
AATACCATACACAAACTCCA+AGG + chr7_4:44347408-44347427 Msa1156120:five_prime_UTR 35.0%
ATACCATACACAAACTCCAA+GGG + chr7_4:44347409-44347428 Msa1156120:five_prime_UTR 35.0%
GGGAGTTATGAATGAAATGA+CGG - chr7_4:44347440-44347459 None:intergenic 35.0%
!! TGAAGAAGTACTATCGAAGA+CGG - chr7_4:44347587-44347606 None:intergenic 35.0%
TTTCTGTGTAAGATCAAGCT+TGG + chr7_4:44347714-44347733 Msa1156120:CDS 35.0%
AAGTTAACAAGGATACGTTC+TGG + chr7_4:44347776-44347795 Msa1156120:CDS 35.0%
AAGGTAGATTCGATATGTTG+AGG + chr7_4:44348045-44348064 Msa1156120:intron 35.0%
GGTTGAGTAAAACAGAAAAC+AGG - chr7_4:44348509-44348528 None:intergenic 35.0%
! ATGTTGTTTAGTGACACGTT+GGG - chr7_4:44348731-44348750 None:intergenic 35.0%
ATATGATGAAGAGTGGGAAA+AGG + chr7_4:44348823-44348842 Msa1156120:intron 35.0%
TAAACTAAGGGGTTTATTGG+AGG + chr7_4:44348853-44348872 Msa1156120:intron 35.0%
AAACTAAGGGGTTTATTGGA+GGG + chr7_4:44348854-44348873 Msa1156120:intron 35.0%
TGCAGTTATGGTAAAATGCA+TGG - chr7_4:44348955-44348974 None:intergenic 35.0%
! TTTGAAGCTTTCAACCAGAT+TGG - chr7_4:44349207-44349226 None:intergenic 35.0%
GTTTAGCAAAGACCAATTCA+AGG + chr7_4:44349275-44349294 Msa1156120:intron 35.0%
ATGTACATGTAGCCAAATCA+GGG + chr7_4:44349346-44349365 Msa1156120:intron 35.0%
ATAATCCACTCTTATGCACA+TGG - chr7_4:44349451-44349470 None:intergenic 35.0%
TGGATTATTCATGACTCATG+AGG + chr7_4:44349463-44349482 Msa1156120:intron 35.0%
GGATTATTCATGACTCATGA+GGG + chr7_4:44349464-44349483 Msa1156120:intron 35.0%
TCAAAAATCAATCTCTGGTG+TGG + chr7_4:44349698-44349717 Msa1156120:intron 35.0%
TTGCAGCCATGACTATTATA+AGG + chr7_4:44349723-44349742 Msa1156120:intron 35.0%
!! CAGGGATAAAAGTGTCATAA+GGG - chr7_4:44349767-44349786 None:intergenic 35.0%
AGTGTAGATTTGGATAACCT+TGG + chr7_4:44349800-44349819 Msa1156120:intron 35.0%
! TACAATGAATTTTGCAGGTG+TGG + chr7_4:44349831-44349850 Msa1156120:intron 35.0%
TGATTGCAACCAAGATAACA+AGG + chr7_4:44349926-44349945 Msa1156120:CDS 35.0%
TACAGCTTACAACAACAACA+TGG - chr7_4:44350284-44350303 None:intergenic 35.0%
TCATGGTCTATCTATAAAGG+TGG + chr7_4:44350364-44350383 Msa1156120:three_prime_UTR 35.0%
AAGGGATACCTAATGTACAT+GGG + chr7_4:44350459-44350478 Msa1156120:three_prime_UTR 35.0%
CCATAATACCCATGTACATT+AGG - chr7_4:44350470-44350489 None:intergenic 35.0%
CCTAATGTACATGGGTATTA+TGG + chr7_4:44350467-44350486 Msa1156120:three_prime_UTR 35.0%
TTCGTCCAGAAATACACTTT+GGG - chr7_4:44350594-44350613 None:intergenic 35.0%
TTTCGTCCAGAAATACACTT+TGG - chr7_4:44350595-44350614 None:intergenic 35.0%
CGTTAATATGAGGGTGGAAT+TGG - chr7_4:44347380-44347399 None:intergenic 40.0%
TGTTGCGGTCGTTAATATGA+GGG - chr7_4:44347389-44347408 None:intergenic 40.0%
TTGTTGCGGTCGTTAATATG+AGG - chr7_4:44347390-44347409 None:intergenic 40.0%
!! GAATTGGACTCTCTGAGATA+TGG - chr7_4:44347497-44347516 None:intergenic 40.0%
AGATTAAGAGCCATTGGTGT+TGG - chr7_4:44347535-44347554 None:intergenic 40.0%
TCTTCATCGAAGCTATCACT+TGG + chr7_4:44347601-44347620 Msa1156120:CDS 40.0%
GCTCTTGAGATTAACACTCT+TGG - chr7_4:44347671-44347690 None:intergenic 40.0%
ATCTCAAGAGCTTAAGCTTG+AGG + chr7_4:44347680-44347699 Msa1156120:CDS 40.0%
AGATCAAGCTTGGAAACTAC+TGG + chr7_4:44347724-44347743 Msa1156120:CDS 40.0%
! AGCTCTAGCTGTATGAAACA+AGG - chr7_4:44347978-44347997 None:intergenic 40.0%
ATACAGCTAGAGCTAGCTAT+AGG + chr7_4:44347984-44348003 Msa1156120:intron 40.0%
TTTGTGTAAGAGAGTTTCGC+AGG + chr7_4:44348096-44348115 Msa1156120:intron 40.0%
TTGTGTAAGAGAGTTTCGCA+GGG + chr7_4:44348097-44348116 Msa1156120:intron 40.0%
GTCCATTGATCAGTACATCT+TGG + chr7_4:44348561-44348580 Msa1156120:intron 40.0%
! CACCAAGATGTACTGATCAA+TGG - chr7_4:44348566-44348585 None:intergenic 40.0%
! GATGTTGTTTAGTGACACGT+TGG - chr7_4:44348732-44348751 None:intergenic 40.0%
ACAGCTACTACTTGCAGTTA+TGG - chr7_4:44348967-44348986 None:intergenic 40.0%
! GAAGAGGTAATTCACTGGTT+TGG + chr7_4:44349086-44349105 Msa1156120:intron 40.0%
AGCATTCATGCTTTCCAATC+TGG + chr7_4:44349190-44349209 Msa1156120:intron 40.0%
CTGGTTGAAAGCTTCAAAGT+TGG + chr7_4:44349209-44349228 Msa1156120:intron 40.0%
!! AAAGCTTCAAAGTTGGCCTT+TGG + chr7_4:44349216-44349235 Msa1156120:intron 40.0%
GATGTACATGTAGCCAAATC+AGG + chr7_4:44349345-44349364 Msa1156120:intron 40.0%
TATACAAGCACACCCTGATT+TGG - chr7_4:44349361-44349380 None:intergenic 40.0%
TTTCTCCATGTGCATAAGAG+TGG + chr7_4:44349443-44349462 Msa1156120:intron 40.0%
TCAAACTCTGATGTACCACT+GGG + chr7_4:44349628-44349647 Msa1156120:intron 40.0%
!! GCAGGGATAAAAGTGTCATA+AGG - chr7_4:44349768-44349787 None:intergenic 40.0%
! TTTGGAGCTATCACTTTGCA+AGG - chr7_4:44349858-44349877 None:intergenic 40.0%
GCAACCAAGATAACAAGGTA+TGG + chr7_4:44349931-44349950 Msa1156120:intron 40.0%
TGGCCTGACATAGTGTTTAA+TGG + chr7_4:44350004-44350023 Msa1156120:intron 40.0%
! CACCTTAATTCCTAGCTCTT+TGG - chr7_4:44350047-44350066 None:intergenic 40.0%
CAAAGAGCTAGGAATTAAGG+TGG + chr7_4:44350045-44350064 Msa1156120:CDS 40.0%
! GCAACTTTTCCCTATGCATA+GGG - chr7_4:44350317-44350336 None:intergenic 40.0%
! AGCAACTTTTCCCTATGCAT+AGG - chr7_4:44350318-44350337 None:intergenic 40.0%
AAATTGAGTCAGTGCTGTCA+AGG + chr7_4:44350440-44350459 Msa1156120:three_prime_UTR 40.0%
AATTGAGTCAGTGCTGTCAA+GGG + chr7_4:44350441-44350460 Msa1156120:three_prime_UTR 40.0%
CAAGGGATACCTAATGTACA+TGG + chr7_4:44350458-44350477 Msa1156120:three_prime_UTR 40.0%
GCTAGACGTCATTAAGTGTA+TGG - chr7_4:44350507-44350526 None:intergenic 40.0%
CACTTAATGACGTCTAGCAA+CGG + chr7_4:44350509-44350528 Msa1156120:three_prime_UTR 40.0%
! TCCAGAAATACACTTTGGGA+TGG - chr7_4:44350590-44350609 None:intergenic 40.0%
TTGCCCTTGGAGTTTGTGTA+TGG - chr7_4:44347415-44347434 None:intergenic 45.0%
ATGTGAAGAGGAGGAAGAGT+GGG - chr7_4:44347460-44347479 None:intergenic 45.0%
GCATGTGGAGAGTGAAGAAT+TGG - chr7_4:44347513-44347532 None:intergenic 45.0%
GTGCAGAGATTAAGAGCCAT+TGG - chr7_4:44347541-44347560 None:intergenic 45.0%
GGTTGTGCCAATCCATTTAG+GGG - chr7_4:44347566-44347585 None:intergenic 45.0%
CGGTTGTGCCAATCCATTTA+GGG - chr7_4:44347567-44347586 None:intergenic 45.0%
ACGGTTGTGCCAATCCATTT+AGG - chr7_4:44347568-44347587 None:intergenic 45.0%
AGCTTAAGCTTGAGGAAGAG+TGG + chr7_4:44347688-44347707 Msa1156120:CDS 45.0%
GCTTAAGCTTGAGGAAGAGT+GGG + chr7_4:44347689-44347708 Msa1156120:CDS 45.0%
! AGTAACTTGTCCAACCGTCA+CGG - chr7_4:44347755-44347774 None:intergenic 45.0%
ATGATTAACGTCGCCACGTT+AGG + chr7_4:44348148-44348167 Msa1156120:intron 45.0%
CCATGAACTTCTACCTAACG+TGG - chr7_4:44348164-44348183 None:intergenic 45.0%
CCACGTTAGGTAGAAGTTCA+TGG + chr7_4:44348161-44348180 Msa1156120:intron 45.0%
GTAACTAGTAACGCTGTGCA+TGG - chr7_4:44348530-44348549 None:intergenic 45.0%
TTGTTTAGTGACACGTTGGG+AGG - chr7_4:44348728-44348747 None:intergenic 45.0%
TCATGACTCATGAGGGTTGT+TGG + chr7_4:44349471-44349490 Msa1156120:intron 45.0%
CATGACTCATGAGGGTTGTT+GGG + chr7_4:44349472-44349491 Msa1156120:intron 45.0%
CAGCTGGCTGATCACTATTT+AGG - chr7_4:44349509-44349528 None:intergenic 45.0%
CTCAAACTCTGATGTACCAC+TGG + chr7_4:44349627-44349646 Msa1156120:intron 45.0%
CAAACTCTGATGTACCACTG+GGG + chr7_4:44349629-44349648 Msa1156120:intron 45.0%
TATGGTTGCCCATGCTTTCT+TGG + chr7_4:44349984-44350003 Msa1156120:intron 45.0%
! ATGTCAGGCCAAGAAAGCAT+GGG - chr7_4:44349995-44350014 None:intergenic 45.0%
TATGTCAGGCCAAGAAAGCA+TGG - chr7_4:44349996-44350015 None:intergenic 45.0%
TAATGGTTATTGGCAGCCCT+TGG + chr7_4:44350021-44350040 Msa1156120:intron 45.0%
! ATTCCTAGCTCTTTGGCCAA+GGG - chr7_4:44350040-44350059 None:intergenic 45.0%
! AATTCCTAGCTCTTTGGCCA+AGG - chr7_4:44350041-44350060 None:intergenic 45.0%
GGCCAAAGAGCTAGGAATTA+AGG + chr7_4:44350042-44350061 Msa1156120:CDS 45.0%
GCTAGAACGAACTGTGTCAA+TGG - chr7_4:44350149-44350168 None:intergenic 45.0%
TGCAATTGTAAGCTGCTGAG+TGG + chr7_4:44350241-44350260 Msa1156120:three_prime_UTR 45.0%
TTAATGACGTCTAGCAACGG+AGG + chr7_4:44350512-44350531 Msa1156120:three_prime_UTR 45.0%
GCCATCCCAAAGTGTATTTC+TGG + chr7_4:44350586-44350605 Msa1156120:three_prime_UTR 45.0%
TGCGGTCGTTAATATGAGGG+TGG - chr7_4:44347386-44347405 None:intergenic 50.0%
!! TGAAATGACGGTGTTGCCCT+TGG - chr7_4:44347428-44347447 None:intergenic 50.0%
GATGTGAAGAGGAGGAAGAG+TGG - chr7_4:44347461-44347480 None:intergenic 50.0%
! TCTGAGATATGGTCGTGTGG+TGG - chr7_4:44347486-44347505 None:intergenic 50.0%
!! CTCTCTGAGATATGGTCGTG+TGG - chr7_4:44347489-44347508 None:intergenic 50.0%
TCTCCACATGCCAACACCAA+TGG + chr7_4:44347522-44347541 Msa1156120:exon 50.0%
ATCTCTGCACCTCCCCTAAA+TGG + chr7_4:44347551-44347570 Msa1156120:CDS 50.0%
TGCACCTCCCCTAAATGGAT+TGG + chr7_4:44347556-44347575 Msa1156120:CDS 50.0%
TGTGCCAATCCATTTAGGGG+AGG - chr7_4:44347563-44347582 None:intergenic 50.0%
!! GAGGACGACGGTTTTATCAC+CGG - chr7_4:44347818-44347837 None:intergenic 50.0%
TCCTCGACATGTACACCCAA+TGG + chr7_4:44347833-44347852 Msa1156120:CDS 50.0%
ACCATTGGGTGTACATGTCG+AGG - chr7_4:44347837-44347856 None:intergenic 50.0%
GAAAACGGGGAGATAGAGAG+AGG - chr7_4:44348656-44348675 None:intergenic 50.0%
GCAAAGACCAATTCAAGGCG+TGG + chr7_4:44349280-44349299 Msa1156120:intron 50.0%
CTGATGACCACGCCTTGAAT+TGG - chr7_4:44349290-44349309 None:intergenic 50.0%
AAGCTGCTGAGTGGAAGATG+AGG + chr7_4:44350250-44350269 Msa1156120:three_prime_UTR 50.0%
TCTCGCACCCAAGATCATTC+CGG + chr7_4:44350541-44350560 Msa1156120:three_prime_UTR 50.0%
TGTCCAGCCGGAATGATCTT+GGG - chr7_4:44350551-44350570 None:intergenic 50.0%
TTGTCCAGCCGGAATGATCT+TGG - chr7_4:44350552-44350571 None:intergenic 50.0%
ATTCCGGCTGGACAAAACAC+AGG + chr7_4:44350557-44350576 Msa1156120:three_prime_UTR 50.0%
! ACACCTGTGTTTTGTCCAGC+CGG - chr7_4:44350563-44350582 None:intergenic 50.0%
!! TGGTGGTGGATGTGAAGAGG+AGG - chr7_4:44347469-44347488 None:intergenic 55.0%
!! GTGTGGTGGTGGATGTGAAG+AGG - chr7_4:44347472-44347491 None:intergenic 55.0%
GAGATATGGTCGTGTGGTGG+TGG - chr7_4:44347483-44347502 None:intergenic 55.0%
!! GAGCCATTGGTGTTGGCATG+TGG - chr7_4:44347528-44347547 None:intergenic 55.0%
AACTACTGGACCCACCGTGA+CGG + chr7_4:44347738-44347757 Msa1156120:CDS 55.0%
ACTTGTCCAACCGTCACGGT+GGG - chr7_4:44347751-44347770 None:intergenic 55.0%
AACTTGTCCAACCGTCACGG+TGG - chr7_4:44347752-44347771 None:intergenic 55.0%
TCACCGGCGGCATTAACGAT+GGG - chr7_4:44347802-44347821 None:intergenic 55.0%
ATCACCGGCGGCATTAACGA+TGG - chr7_4:44347803-44347822 None:intergenic 55.0%
!! GACGACGGTTTTATCACCGG+CGG - chr7_4:44347815-44347834 None:intergenic 55.0%
GGTGTACATGTCGAGGACGA+CGG - chr7_4:44347830-44347849 None:intergenic 55.0%
TGGCCCATCGTTAATGCCGC+CGG + chr7_4:44347796-44347815 Msa1156120:CDS 60.0%
CAAGGCGTGGTCATCAGCTG+AGG + chr7_4:44349293-44349312 Msa1156120:intron 60.0%
CTACTAGCGCTAGACCCCAG+TGG - chr7_4:44349646-44349665 None:intergenic 60.0%
CAGCCCTTGGCCAAAGAGCT+AGG + chr7_4:44350034-44350053 Msa1156120:intron 60.0%
GCACCCAAGATCATTCCGGC+TGG + chr7_4:44350545-44350564 Msa1156120:three_prime_UTR 60.0%
ACTGGACCCACCGTGACGGT+TGG + chr7_4:44347742-44347761 Msa1156120:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 44347268 44350635 44347268 ID=Msa1156120;Name=Msa1156120
chr7_4 mRNA 44347268 44350635 44347268 ID=Msa1156120-mRNA-1;Parent=Msa1156120;Name=Msa1156120-mRNA-1;_AED=0.04;_eAED=0.04;_QI=261|1|1|1|1|1|3|464|186
chr7_4 exon 44347268 44347854 44347268 ID=Msa1156120-mRNA-1:exon:11279;Parent=Msa1156120-mRNA-1
chr7_4 exon 44349848 44349947 44349848 ID=Msa1156120-mRNA-1:exon:11280;Parent=Msa1156120-mRNA-1
chr7_4 exon 44350037 44350635 44350037 ID=Msa1156120-mRNA-1:exon:11281;Parent=Msa1156120-mRNA-1
chr7_4 five_prime_UTR 44347268 44347528 44347268 ID=Msa1156120-mRNA-1:five_prime_utr;Parent=Msa1156120-mRNA-1
chr7_4 CDS 44347529 44347854 44347529 ID=Msa1156120-mRNA-1:cds;Parent=Msa1156120-mRNA-1
chr7_4 CDS 44349848 44349947 44349848 ID=Msa1156120-mRNA-1:cds;Parent=Msa1156120-mRNA-1
chr7_4 CDS 44350037 44350171 44350037 ID=Msa1156120-mRNA-1:cds;Parent=Msa1156120-mRNA-1
chr7_4 three_prime_UTR 44350172 44350635 44350172 ID=Msa1156120-mRNA-1:three_prime_utr;Parent=Msa1156120-mRNA-1
Gene Sequence

>Msa1156120

ATGCCAACACCAATGGCTCTTAATCTCTGCACCTCCCCTAAATGGATTGGCACAACCGTCTTCGATAGTACTTCTTCATCGAAGCTATCACTTGGTTCTTCTTCTTCTACTACTTCATTTTCTTCTTCCATTTTGAATTCCAAGAGTGTTAATCTCAAGAGCTTAAGCTTGAGGAAGAGTGGGAGTTTCTGTGTAAGATCAAGCTTGGAAACTACTGGACCCACCGTGACGGTTGGACAAGTTACTGAAGTTAACAAGGATACGTTCTGGCCCATCGTTAATGCCGCCGGTGATAAAACCGTCGTCCTCGACATGTACACCCAATGGTGTGGTCCTTGCAAAGTGATAGCTCCAAAATACAAAGAATTAGCTGAGAAGTATTTGGATGTTGTCTTTCTAAAGCTTGATTGCAACCAAGATAACAAGCCCTTGGCCAAAGAGCTAGGAATTAAGGTGGTTCCCACTTTTAAAATTCTGAAAGACAACAAGGTTGTAAAAGAAGTAACTGGAGCTAAATATGATGATTTGGTCTTTGCCATTGACACAGTTCGTTCTAGCTAA

Protein sequence

>Msa1156120

MPTPMALNLCTSPKWIGTTVFDSTSSSKLSLGSSSSTTSFSSSILNSKSVNLKSLSLRKSGSFCVRSSLETTGPTVTVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKYKELAEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDNKVVKEVTGAKYDDLVFAIDTVRSS*