AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0971780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0971780 MtrunA17_Chr6g0450671 98.148 432 8 0 1 432 1 432 0.0 847
Msa0971780 MtrunA17_Chr6g0453121 50.152 329 149 5 115 429 130 457 6.04e-96 295
Msa0971780 MtrunA17_Chr2g0285791 47.391 230 99 5 115 323 90 318 8.23e-57 190
Msa0971780 MtrunA17_Chr7g0272621 30.351 313 174 10 128 418 128 418 7.39e-33 128
Msa0971780 MtrunA17_Chr1g0196111 30.035 283 172 11 161 428 13 284 6.90e-16 79.3
Msa0971780 MtrunA17_Chr6g0448981 29.934 304 168 16 147 427 106 387 5.77e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0971780 AT3G27925.1 88.556 367 40 1 68 432 73 439 0.0 650
Msa0971780 AT3G27925.2 88.556 367 40 1 68 432 73 439 0.0 650
Msa0971780 AT5G39830.1 50.760 329 147 3 115 429 120 447 2.86e-96 296
Msa0971780 AT5G39830.2 48.328 329 141 4 115 429 120 433 2.43e-86 270
Msa0971780 AT4G18370.1 49.130 230 99 5 115 327 92 320 2.78e-59 197
Msa0971780 AT4G18370.2 46.857 175 77 4 114 273 91 264 5.62e-40 144
Msa0971780 AT5G27660.2 32.166 314 168 9 143 428 133 429 2.27e-33 130
Msa0971780 AT5G27660.1 32.166 314 162 10 143 428 128 418 2.81e-31 124
Msa0971780 AT4G18370.3 45.139 144 64 3 115 243 92 235 2.27e-30 117
Msa0971780 AT2G47940.1 28.297 364 199 14 103 428 86 425 4.11e-18 87.0
Msa0971780 AT2G47940.2 28.297 364 199 14 103 428 85 424 4.29e-18 87.0
Msa0971780 AT5G40200.1 28.889 270 165 13 161 414 164 422 5.61e-11 65.1

Find 111 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGGTTCCTCAGGGATC+TGG 0.232760 6_4:+3853749 Msa0971780:CDS
TCACCAATTATCATGTTATC+AGG 0.249166 6_4:+3853807 Msa0971780:CDS
TAGTATCAATTAGATTTATT+TGG 0.253150 6_4:+3857594 Msa0971780:three_prime_UTR
ACCCCTGATAACATGATAAT+TGG 0.283190 6_4:-3853810 None:intergenic
AACATCTGTGAATGGTAATA+AGG 0.295684 6_4:+3856347 Msa0971780:CDS
GTTGATCAATTGGTGAAGTT+TGG 0.310545 6_4:+3855648 Msa0971780:CDS
GCTCCTGCCACTGGTCCAGC+TGG 0.312294 6_4:+3855759 Msa0971780:CDS
AAGATCTAAAACAGCAATAA+TGG 0.315278 6_4:+3857558 Msa0971780:three_prime_UTR
AGCTGTTTATGTGTATTCTA+AGG 0.332636 6_4:+3857319 Msa0971780:three_prime_UTR
GTCAGAAAGTGTTTGCTATT+GGG 0.343361 6_4:+3854894 Msa0971780:CDS
CGCTTACAACTGGAGTTATC+AGG 0.345355 6_4:+3855063 Msa0971780:CDS
ATCTGGGTCAGGTTTCGTTT+GGG 0.345654 6_4:+3853766 Msa0971780:CDS
AGATCAATCTGTGGAGCAAT+TGG 0.346124 6_4:+3855710 Msa0971780:CDS
GTCTCTGCTGACTTGCTTGT+TGG 0.352804 6_4:+3854872 Msa0971780:CDS
GTTCCTCAGGGATCTGGGTC+AGG 0.354730 6_4:+3853755 Msa0971780:CDS
GGATGTGTTGGAGGTTCCTC+AGG 0.362434 6_4:+3853742 Msa0971780:CDS
ATTGGCCTGAGCTTGTCTTT+AGG 0.367903 6_4:-3854839 None:intergenic
GTCAGGTTTCGTTTGGGATA+AGG 0.380706 6_4:+3853772 Msa0971780:CDS
GATCTGGGTCAGGTTTCGTT+TGG 0.381779 6_4:+3853765 Msa0971780:CDS
GGGCCACTCCTAGATAGTTC+TGG 0.384530 6_4:+3855276 Msa0971780:CDS
GAAATTAGTTCGGCTGCAAC+TGG 0.387158 6_4:+3855195 Msa0971780:CDS
GCAAACTTGATTCCTAATAT+AGG 0.388647 6_4:-3855684 None:intergenic
AATGGTAATAAGGTTTCTAA+TGG 0.407424 6_4:+3856357 Msa0971780:CDS
GATAGTTCTGGAAACCTCAT+TGG 0.407887 6_4:+3855288 Msa0971780:CDS
ACCTACGATGCAAAAGTTGT+TGG 0.408508 6_4:+3854773 Msa0971780:CDS
GGTCAGAAAGTGTTTGCTAT+TGG 0.408657 6_4:+3854893 Msa0971780:CDS
GTCTTGGATGCTCCTGCCAC+TGG 0.408824 6_4:+3855750 Msa0971780:CDS
TCATCAGACTGCAGCTTCCT+AGG 0.412956 6_4:-3852381 None:intergenic
CTAGATCACACGCTTACAAC+TGG 0.413765 6_4:+3855053 Msa0971780:CDS
CATCATGTTTCGTCGGCCTT+CGG 0.417029 6_4:-3857239 None:intergenic
TTCCCAGCTGGACCAGTGGC+AGG 0.417611 6_4:-3855762 None:intergenic
TGATGAAGATGAAGAGATTT+CGG 0.420175 6_4:-3852156 None:intergenic
TTGATCAATTGGTGAAGTTT+GGG 0.427297 6_4:+3855649 Msa0971780:CDS
TTATTATCACTGTGAAGAAT+AGG 0.429178 6_4:+3857453 Msa0971780:three_prime_UTR
TAGTATATATCTACACTGTT+TGG 0.430778 6_4:-3857348 None:intergenic
TCTCCATCTGGTGCATCCTC+TGG 0.434161 6_4:+3855330 Msa0971780:CDS
TCAGGGGTGCTTCGGATCTC+AGG 0.437066 6_4:+3853825 Msa0971780:CDS
TGAGGTTTCCAGAACTATCT+AGG 0.437219 6_4:-3855284 None:intergenic
GCCTTCGGCTCGAGAATGAC+GGG 0.437571 6_4:-3857224 None:intergenic
CAATGGCATTGTTGATCAAT+TGG 0.442333 6_4:+3855638 Msa0971780:CDS
TCATGTTATCAGGGGTGCTT+CGG 0.445830 6_4:+3853817 Msa0971780:CDS
AAACTTACTGCTTTCCCAGC+TGG 0.448518 6_4:-3855774 None:intergenic
CATCAGTCTGTATAACATCT+TGG 0.450735 6_4:-3855227 None:intergenic
TGGAGGTTCCTCAGGGATCT+GGG 0.453594 6_4:+3853750 Msa0971780:CDS
GATTGAAGAGCGAGGGAATG+AGG 0.454350 6_4:-3852127 None:intergenic
GGGGTGTAGGAGGAAAAGGG+TGG 0.455201 6_4:-3852205 None:intergenic
AAGGTTACTAGACCTATATT+AGG 0.456851 6_4:+3855672 Msa0971780:CDS
TGCGTTTACTTTGGATGTGT+TGG 0.458605 6_4:+3853730 Msa0971780:CDS
TCTGGTGCATCCTCTGGTGT+TGG 0.464380 6_4:+3855336 Msa0971780:CDS
GGTGTAGGAGGAAAAGGGTG+GGG 0.464956 6_4:-3852203 None:intergenic
AATAGGTTCATTCACTTACA+TGG 0.465613 6_4:+3857470 Msa0971780:three_prime_UTR
ATTCTTGACCAATGTAAAGT+TGG 0.472847 6_4:+3856396 Msa0971780:CDS
CACCAATTATCATGTTATCA+GGG 0.476557 6_4:+3853808 Msa0971780:CDS
TGAAGAGGAAGAAGAAGCTA+TGG 0.476692 6_4:-3852076 None:intergenic
CCAATGTAAAGTTGGTGATA+AGG 0.479540 6_4:+3856404 Msa0971780:CDS
TAGGCAGGATGCGTTTACTT+TGG 0.485183 6_4:+3853721 Msa0971780:intron
GCAGAGACACCAACAGGTAT+TGG 0.491987 6_4:-3854857 None:intergenic
AATTGCTCCACAGATTGATC+TGG 0.493425 6_4:-3855708 None:intergenic
AATAAATCTAATTGATACTA+CGG 0.497260 6_4:-3857591 None:intergenic
AAACCTCATTGGGATAAATA+CGG 0.500616 6_4:+3855299 Msa0971780:CDS
AGTGGCCCTCCGCTGTTACC+AGG 0.502512 6_4:-3855261 None:intergenic
ATAGTTCTGGAAACCTCATT+GGG 0.505914 6_4:+3855289 Msa0971780:CDS
GTGGAGCAATTGGGAGTAAG+TGG 0.506145 6_4:+3855720 Msa0971780:CDS
ACAGTGTAGATATATACTAT+AGG 0.508685 6_4:+3857352 Msa0971780:three_prime_UTR
GATCAATCTGTGGAGCAATT+GGG 0.509374 6_4:+3855711 Msa0971780:CDS
ACGGCTATATACTCTCCATC+TGG 0.514727 6_4:+3855318 Msa0971780:CDS
AAGTCAGCAGAGACACCAAC+AGG 0.516720 6_4:-3854863 None:intergenic
TGCTTTCCCAGCTGGACCAG+TGG 0.520522 6_4:-3855766 None:intergenic
GGCCTTCGGCTCGAGAATGA+CGG 0.522075 6_4:-3857225 None:intergenic
AGTAAGTGGAGTGCTTGTCT+TGG 0.523157 6_4:+3855734 Msa0971780:CDS
TGTTGATATTCAGGTGATTG+TGG 0.527659 6_4:+3857169 Msa0971780:intron
TCAACAAAGCGTGATTCCTA+TGG 0.532445 6_4:+3856300 Msa0971780:CDS
GCACAGCAACATCCTTGTCT+TGG 0.543843 6_4:-3854802 None:intergenic
CCTTATCACCAACTTTACAT+TGG 0.546658 6_4:-3856404 None:intergenic
GTTTACTTTGGATGTGTTGG+AGG 0.547964 6_4:+3853733 Msa0971780:CDS
GACATCATAACATCTGTGAA+TGG 0.547970 6_4:+3856339 Msa0971780:CDS
GAATGTGGAAATGAGTGAAG+AGG 0.548178 6_4:-3852091 None:intergenic
GGGTGTAGGAGGAAAAGGGT+GGG 0.555938 6_4:-3852204 None:intergenic
CTCCTGCCACTGGTCCAGCT+GGG 0.560697 6_4:+3855760 Msa0971780:CDS
TCAGAGCTCACAGTATCGAC+AGG 0.563331 6_4:-3855369 None:intergenic
ACTGATGCAGCAATTAATCC+TGG 0.563387 6_4:+3855243 Msa0971780:CDS
GATGTGTTGGAGGTTCCTCA+GGG 0.571176 6_4:+3853743 Msa0971780:CDS
GGAAGAGTTGAAGAAGAATG+TGG 0.571372 6_4:-3852106 None:intergenic
TAGCCGTATTTATCCCAATG+AGG 0.585080 6_4:-3855302 None:intergenic
TCAATTGGTGAAGTTTGGGA+AGG 0.586725 6_4:+3855653 Msa0971780:CDS
AGTGTTTGCTATTGGGAACC+CGG 0.591432 6_4:+3854901 Msa0971780:CDS
TTTCTCAAAATAGTGGACTT+CGG 0.593026 6_4:+3855169 Msa0971780:intron
ACACCAGAGGATGCACCAGA+TGG 0.595755 6_4:-3855333 None:intergenic
AAGAAACTTACTTAACAGCA+AGG 0.597017 6_4:-3852461 None:intergenic
TTAGTTATATAAACAACAGA+AGG 0.597978 6_4:-3852438 None:intergenic
ACTTCGGCGAGAAATTAGTT+CGG 0.598072 6_4:+3855185 Msa0971780:CDS
AGTTGCACATCATGTTTCGT+CGG 0.599114 6_4:-3857246 None:intergenic
ATTAATCCTGGTAACAGCGG+AGG 0.605722 6_4:+3855255 Msa0971780:CDS
GCTTGGTGATTGAAGAGCGA+GGG 0.606296 6_4:-3852134 None:intergenic
TTAATCCTGGTAACAGCGGA+GGG 0.614211 6_4:+3855256 Msa0971780:CDS
GGTTTCGTTTGGGATAAGGA+TGG 0.615453 6_4:+3853776 Msa0971780:CDS
AAGATGAAGAGATTTCGGCT+TGG 0.616332 6_4:-3852151 None:intergenic
ACCAATTATCATGTTATCAG+GGG 0.625604 6_4:+3853809 Msa0971780:CDS
GTCTGTATAACATCTTGGAT+AGG 0.626706 6_4:-3855222 None:intergenic
TTGTGTTGGAGCAAATAGTA+CGG 0.627290 6_4:-3857376 None:intergenic
ACCTAAAATGAGTCTACCAT+AGG 0.641419 6_4:-3856316 None:intergenic
AAGCTCAGGCCAATACCTGT+TGG 0.645438 6_4:+3854848 Msa0971780:CDS
CCTTCGGCTCGAGAATGACG+GGG 0.652759 6_4:-3857223 None:intergenic
GGGTGAGAAAGTAAGTGAGT+TGG 0.670662 6_4:-3852183 None:intergenic
AATAGAAAATCCAACACCAG+AGG 0.677123 6_4:-3855346 None:intergenic
GGCTTGGTGATTGAAGAGCG+AGG 0.677391 6_4:-3852135 None:intergenic
TTTCCAGAACTATCTAGGAG+TGG 0.677655 6_4:-3855279 None:intergenic
GCAATTAATCCTGGTAACAG+CGG 0.687109 6_4:+3855252 Msa0971780:CDS
GTTTGCTCCAGATCAATCTG+TGG 0.693801 6_4:+3855701 Msa0971780:CDS
GTGATTGTGGAAGTGTTGCG+AGG 0.708457 6_4:+3857182 Msa0971780:CDS
AAACCTGACCCAGATCCCTG+AGG 0.760209 6_4:-3853758 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTTTATATATTT+AGG + chr6_4:3855614-3855633 Msa0971780:intron 0.0%
!!! TGTTAATTTGAATATAAATA+TGG + chr6_4:3856480-3856499 Msa0971780:intron 10.0%
!! TATAACAAAAATCATAAAAA+TGG - chr6_4:3856706-3856725 None:intergenic 10.0%
!! AAACATTAAATAAAGTTAAA+CGG + chr6_4:3856896-3856915 Msa0971780:intron 10.0%
!!! ATTTTCTTTTTTAACTTTTT+GGG - chr6_4:3857079-3857098 None:intergenic 10.0%
!!! TATTTTCTTTTTTAACTTTT+TGG - chr6_4:3857080-3857099 None:intergenic 10.0%
!!! CAATTTTACTAAATCAAATT+TGG - chr6_4:3852734-3852753 None:intergenic 15.0%
!!! TGAAGATTTAAAATTGATTT+TGG + chr6_4:3852776-3852795 Msa0971780:intron 15.0%
!! TATTAGTAAAAGTAAGATTA+AGG - chr6_4:3852956-3852975 None:intergenic 15.0%
!! AAAAAATAAACGATTTACTT+TGG + chr6_4:3853287-3853306 Msa0971780:intron 15.0%
!! AAAAATAAACGATTTACTTT+GGG + chr6_4:3853288-3853307 Msa0971780:intron 15.0%
!!! AAAATTGATTTTGTTATGTT+TGG + chr6_4:3853450-3853469 Msa0971780:intron 15.0%
!!! ACTATTTTTATAAGCTATTA+TGG + chr6_4:3854030-3854049 Msa0971780:intron 15.0%
!!! CTATTTTTATAAGCTATTAT+GGG + chr6_4:3854031-3854050 Msa0971780:intron 15.0%
!!! TATTTTTATAAGCTATTATG+GGG + chr6_4:3854032-3854051 Msa0971780:intron 15.0%
!! TAAACTTAAAATCAAGAAAT+TGG + chr6_4:3854235-3854254 Msa0971780:intron 15.0%
!!! ATTTTATATATTTAGGTCAA+TGG + chr6_4:3855621-3855640 Msa0971780:intron 15.0%
!! AAATTTATTCTTATAGAGTT+AGG + chr6_4:3855830-3855849 Msa0971780:intron 15.0%
!!! TTTGATTACAAATTTTTCAA+GGG + chr6_4:3856221-3856240 Msa0971780:intron 15.0%
!! TTAAATTTCTATTATGTTGT+AGG + chr6_4:3856269-3856288 Msa0971780:intron 15.0%
!! TAAATTTCTATTATGTTGTA+GGG + chr6_4:3856270-3856289 Msa0971780:intron 15.0%
!!! TTATGATTTTTGTTATATCT+CGG + chr6_4:3856709-3856728 Msa0971780:intron 15.0%
!!! ATTTTAGTTTGAGTTTATAA+GGG - chr6_4:3857112-3857131 None:intergenic 15.0%
!!! AATTTTAGTTTGAGTTTATA+AGG - chr6_4:3857113-3857132 None:intergenic 15.0%
!! AATAAATCTAATTGATACTA+CGG - chr6_4:3857594-3857613 None:intergenic 15.0%
!! TTAGTTATATAAACAACAGA+AGG - chr6_4:3852441-3852460 None:intergenic 20.0%
!! AACATTCATAAAAACCAAAA+GGG - chr6_4:3852529-3852548 None:intergenic 20.0%
!! CTTTCTTAATAGTTACAAAA+GGG - chr6_4:3852591-3852610 None:intergenic 20.0%
!! TCTTTCTTAATAGTTACAAA+AGG - chr6_4:3852592-3852611 None:intergenic 20.0%
!! AGATTTAGAGATTAATGATT+TGG + chr6_4:3852609-3852628 Msa0971780:intron 20.0%
!!! GATTTAGTAAAATTGATTCT+AGG + chr6_4:3852739-3852758 Msa0971780:intron 20.0%
!!! AAAATTGATTTTGGTATGTT+TGG + chr6_4:3852785-3852804 Msa0971780:intron 20.0%
!! AAGGTAAAATGATTTACTTT+GGG - chr6_4:3852937-3852956 None:intergenic 20.0%
!! TAAGGTAAAATGATTTACTT+TGG - chr6_4:3852938-3852957 None:intergenic 20.0%
!!! CAATTGTACTAAATCAATTT+TGG - chr6_4:3853100-3853119 None:intergenic 20.0%
!!! TGATTTTGTAACATTTATTC+TGG + chr6_4:3853203-3853222 Msa0971780:intron 20.0%
!! AACATGTCAAAAATCAAATT+TGG - chr6_4:3853375-3853394 None:intergenic 20.0%
!!! GATTTTGAATAAATTGATTC+AGG - chr6_4:3853653-3853672 None:intergenic 20.0%
!! AACTTAAATTTGTATGTATC+TGG + chr6_4:3853883-3853902 Msa0971780:intron 20.0%
!! ACTTAAATTTGTATGTATCT+GGG + chr6_4:3853884-3853903 Msa0971780:intron 20.0%
!! AATTAATCAAACAACTTATC+AGG + chr6_4:3853917-3853936 Msa0971780:intron 20.0%
!! ATTAATCAAACAACTTATCA+GGG + chr6_4:3853918-3853937 Msa0971780:intron 20.0%
!! ATGATAAAAACTTATGCTAT+AGG - chr6_4:3853994-3854013 None:intergenic 20.0%
!! ATTATAACTTACAAGTACTT+AGG - chr6_4:3854179-3854198 None:intergenic 20.0%
!!! TTTGTTGTATACTTAATCAA+AGG + chr6_4:3854198-3854217 Msa0971780:intron 20.0%
!!! CAAGAAATTGGATATTTTAT+TGG + chr6_4:3854247-3854266 Msa0971780:intron 20.0%
!! TATCAGTGCATTAAATTAAA+TGG - chr6_4:3854281-3854300 None:intergenic 20.0%
!! TTAGGCAATATTATAGATTA+AGG - chr6_4:3854344-3854363 None:intergenic 20.0%
!!! TATCATCTTCTTTTTGTTTT+AGG - chr6_4:3854362-3854381 None:intergenic 20.0%
!! AAACAAAAAGAAGATGATAA+TGG + chr6_4:3854363-3854382 Msa0971780:intron 20.0%
!!! ATTATTTGATTTTTGCAGTT+TGG + chr6_4:3855029-3855048 Msa0971780:intron 20.0%
!!! AAAAATTTGACTCTTTTCTT+AGG - chr6_4:3855137-3855156 None:intergenic 20.0%
!! TAAAACATTTGTATAAAGAG+AGG - chr6_4:3855401-3855420 None:intergenic 20.0%
!!! AAATGTTTTAAAAACTGAAC+CGG + chr6_4:3855411-3855430 Msa0971780:intron 20.0%
!!! GTTTGATTACAAATTTTTCA+AGG + chr6_4:3856220-3856239 Msa0971780:intron 20.0%
!!! TATGATTTTTGTTATATCTC+GGG + chr6_4:3856710-3856729 Msa0971780:intron 20.0%
! CAACATTCATAAAAACCAAA+AGG - chr6_4:3852530-3852549 None:intergenic 25.0%
!!! CTTTTGGTTTTTATGAATGT+TGG + chr6_4:3852528-3852547 Msa0971780:intron 25.0%
!!! TTTTTATGAATGTTGGTAGT+AGG + chr6_4:3852535-3852554 Msa0971780:intron 25.0%
!!! TTTTATGAATGTTGGTAGTA+GGG + chr6_4:3852536-3852555 Msa0971780:intron 25.0%
! CAAATTTATCTCACTAAGTA+GGG - chr6_4:3852690-3852709 None:intergenic 25.0%
! TCAAATTTATCTCACTAAGT+AGG - chr6_4:3852691-3852710 None:intergenic 25.0%
!! TTTGATTGTTGTTGTATGTT+TGG + chr6_4:3852706-3852725 Msa0971780:intron 25.0%
! AAGCATTAAGAAAAACAAGA+GGG - chr6_4:3853070-3853089 None:intergenic 25.0%
!!! TTGTTTTTCTTAATGCTTGT+TGG + chr6_4:3853072-3853091 Msa0971780:intron 25.0%
! AAGGTAAAGTGATTTATGTT+AGG + chr6_4:3853241-3853260 Msa0971780:intron 25.0%
! CACATTAGAATTGATTATAG+AGG - chr6_4:3853345-3853364 None:intergenic 25.0%
!!! GAATTTTTAGATTACCCTTT+TGG + chr6_4:3853558-3853577 Msa0971780:intron 25.0%
!! TTGATTCTTTTGATCGAAAA+AGG + chr6_4:3853615-3853634 Msa0971780:intron 25.0%
! TTTAATGTGTGTATGTGTTT+AGG + chr6_4:3853702-3853721 Msa0971780:intron 25.0%
! TTAATCAAACAACTTATCAG+GGG + chr6_4:3853919-3853938 Msa0971780:intron 25.0%
!! TTATTGAATAAAGGCATGTT+TGG + chr6_4:3853948-3853967 Msa0971780:intron 25.0%
!! GTTTTTATCATTCAAGTGTT+TGG + chr6_4:3854003-3854022 Msa0971780:intron 25.0%
! GACTTATTTGAACTTAACTA+TGG - chr6_4:3854132-3854151 None:intergenic 25.0%
!!! ATCTATCTACTGTCTTTTTT+TGG - chr6_4:3854578-3854597 None:intergenic 25.0%
! ATATGGTTAGGAAATATTAC+CGG - chr6_4:3854923-3854942 None:intergenic 25.0%
! GTAATATTTCCTAACCATAT+TGG + chr6_4:3854923-3854942 Msa0971780:intron 25.0%
! TATTCTCTATGAAATTTCCA+TGG + chr6_4:3854968-3854987 Msa0971780:intron 25.0%
! ATACATGTTTCTCAAAATAG+TGG + chr6_4:3855162-3855181 Msa0971780:intron 25.0%
! TTCAAGAGAATAAAGAAAGA+CGG - chr6_4:3855587-3855606 None:intergenic 25.0%
! GAAAACAGCTTATATCAAAA+TGG - chr6_4:3855947-3855966 None:intergenic 25.0%
!! TCAAAGTAAAGAGACTTTTT+GGG - chr6_4:3856111-3856130 None:intergenic 25.0%
!! ATCAAAGTAAAGAGACTTTT+TGG - chr6_4:3856112-3856131 None:intergenic 25.0%
! AATGGTAATAAGGTTTCTAA+TGG + chr6_4:3856357-3856376 Msa0971780:CDS 25.0%
!! TTTTTACGATTTGACGATTA+TGG - chr6_4:3856557-3856576 None:intergenic 25.0%
!! GCAATTTTCATAAGTTATCA+TGG + chr6_4:3856937-3856956 Msa0971780:intron 25.0%
! TGTTAACCTAGTTTCATAAT+TGG + chr6_4:3857143-3857162 Msa0971780:intron 25.0%
! ACATAACCAATTATGAAACT+AGG - chr6_4:3857152-3857171 None:intergenic 25.0%
! AATTGGTTATGTTGATATTC+AGG + chr6_4:3857160-3857179 Msa0971780:intron 25.0%
!! ATATACACATTTCATTTTGC+AGG + chr6_4:3857290-3857309 Msa0971780:three_prime_UTR 25.0%
!! TATACACATTTCATTTTGCA+GGG + chr6_4:3857291-3857310 Msa0971780:three_prime_UTR 25.0%
! TAGTATATATCTACACTGTT+TGG - chr6_4:3857351-3857370 None:intergenic 25.0%
! ACAGTGTAGATATATACTAT+AGG + chr6_4:3857352-3857371 Msa0971780:three_prime_UTR 25.0%
! TTATTATCACTGTGAAGAAT+AGG + chr6_4:3857453-3857472 Msa0971780:three_prime_UTR 25.0%
!! AAGATCTAAAACAGCAATAA+TGG + chr6_4:3857558-3857577 Msa0971780:three_prime_UTR 25.0%
TGATGAAGATGAAGAGATTT+CGG - chr6_4:3852159-3852178 None:intergenic 30.0%
!!! GTTTTTGGTATAGTGAGTTT+TGG - chr6_4:3852261-3852280 None:intergenic 30.0%
! ACAGAATCAAAGCATGTTTT+TGG - chr6_4:3852276-3852295 None:intergenic 30.0%
AAGAAACTTACTTAACAGCA+AGG - chr6_4:3852464-3852483 None:intergenic 30.0%
!! ATTGATTTTGGTATGTTTGG+AGG + chr6_4:3852788-3852807 Msa0971780:intron 30.0%
ATTATCAATGACAATTCTCG+AGG - chr6_4:3852836-3852855 None:intergenic 30.0%
CAAGCATTAAGAAAAACAAG+AGG - chr6_4:3853071-3853090 None:intergenic 30.0%
!! TTGCCTCTAGAATTGATTAT+AGG + chr6_4:3853123-3853142 Msa0971780:intron 30.0%
CAACCTATAATCAATTCTAG+AGG - chr6_4:3853129-3853148 None:intergenic 30.0%
TTGGTTATATAGACAACAGA+GGG - chr6_4:3853483-3853502 None:intergenic 30.0%
TCACCAATTATCATGTTATC+AGG + chr6_4:3853807-3853826 Msa0971780:CDS 30.0%
CACCAATTATCATGTTATCA+GGG + chr6_4:3853808-3853827 Msa0971780:CDS 30.0%
ACCAATTATCATGTTATCAG+GGG + chr6_4:3853809-3853828 Msa0971780:CDS 30.0%
TAACTATGGACATAAGCATT+TGG - chr6_4:3854118-3854137 None:intergenic 30.0%
ACTTTGTGCTTTCTTTAGTA+TGG + chr6_4:3854392-3854411 Msa0971780:intron 30.0%
CGATGTGTTAAGTTAGATAT+CGG + chr6_4:3854425-3854444 Msa0971780:intron 30.0%
GACAACACATAATATATGCA+AGG + chr6_4:3854527-3854546 Msa0971780:intron 30.0%
!!! TATCTACTGTCTTTTTTTGG+TGG - chr6_4:3854575-3854594 None:intergenic 30.0%
TTATGAGTAGAAATCGAACT+CGG - chr6_4:3854682-3854701 None:intergenic 30.0%
AACTAGCATCTCTATTAACA+GGG - chr6_4:3854723-3854742 None:intergenic 30.0%
TAACTAGCATCTCTATTAAC+AGG - chr6_4:3854724-3854743 None:intergenic 30.0%
TATGGTTAGGAAATATTACC+GGG - chr6_4:3854922-3854941 None:intergenic 30.0%
ATATTTCCTAACCATATTGG+TGG + chr6_4:3854926-3854945 Msa0971780:intron 30.0%
CAATACAATATCCACCAATA+TGG - chr6_4:3854940-3854959 None:intergenic 30.0%
TGAAATTTCCATGGAAATCT+CGG + chr6_4:3854977-3854996 Msa0971780:intron 30.0%
!! TTTCTCAAAATAGTGGACTT+CGG + chr6_4:3855169-3855188 Msa0971780:intron 30.0%
AAACCTCATTGGGATAAATA+CGG + chr6_4:3855299-3855318 Msa0971780:CDS 30.0%
TTGATCAATTGGTGAAGTTT+GGG + chr6_4:3855649-3855668 Msa0971780:CDS 30.0%
AAGGTTACTAGACCTATATT+AGG + chr6_4:3855672-3855691 Msa0971780:CDS 30.0%
GCAAACTTGATTCCTAATAT+AGG - chr6_4:3855687-3855706 None:intergenic 30.0%
GATTAAGTAGTTTATCCAGA+CGG - chr6_4:3855858-3855877 None:intergenic 30.0%
!! GCTGTTTTCATAAGTTATCT+TGG + chr6_4:3855958-3855977 Msa0971780:intron 30.0%
AACATCTGTGAATGGTAATA+AGG + chr6_4:3856347-3856366 Msa0971780:CDS 30.0%
ATTCTTGACCAATGTAAAGT+TGG + chr6_4:3856396-3856415 Msa0971780:CDS 30.0%
AGCTGTTTATGTGTATTCTA+AGG + chr6_4:3857319-3857338 Msa0971780:three_prime_UTR 30.0%
! TTTTCAATCTCAACTTGTGT+TGG - chr6_4:3857393-3857412 None:intergenic 30.0%
AATAGGTTCATTCACTTACA+TGG + chr6_4:3857470-3857489 Msa0971780:three_prime_UTR 30.0%
GTCCACTCAAAAAACATCAA+TGG + chr6_4:3852053-3852072 Msa0971780:exon 35.0%
!! CTTTTGTTGTAAATGCTCCT+AGG + chr6_4:3852364-3852383 Msa0971780:CDS 35.0%
!! GAGTTTTGTAATGACCCTTT+TGG + chr6_4:3852512-3852531 Msa0971780:intron 35.0%
TTTATCTCACTAAGTAGGGT+CGG - chr6_4:3852686-3852705 None:intergenic 35.0%
! CACTTGTTCAACTACCTTTT+AGG + chr6_4:3852902-3852921 Msa0971780:intron 35.0%
TTGGGATACATCTACCTAAA+AGG - chr6_4:3852919-3852938 None:intergenic 35.0%
TTGATTATAGGTTGCACGTT+TGG + chr6_4:3853135-3853154 Msa0971780:intron 35.0%
! TTGATTCTAACTTGCATGCT+TGG + chr6_4:3853414-3853433 Msa0971780:intron 35.0%
GTTGGTTATATAGACAACAG+AGG - chr6_4:3853484-3853503 None:intergenic 35.0%
!!! ACCCTTTTGGTTTTTGAATG+TGG + chr6_4:3853571-3853590 Msa0971780:intron 35.0%
CCCACATTCAAAAACCAAAA+GGG - chr6_4:3853575-3853594 None:intergenic 35.0%
!!! CCCTTTTGGTTTTTGAATGT+GGG + chr6_4:3853572-3853591 Msa0971780:intron 35.0%
ACCCACATTCAAAAACCAAA+AGG - chr6_4:3853576-3853595 None:intergenic 35.0%
! GAATGTGGGTATTTCTGTTT+AGG + chr6_4:3853586-3853605 Msa0971780:intron 35.0%
! TGGGTATTTCTGTTTAGGAA+GGG + chr6_4:3853591-3853610 Msa0971780:intron 35.0%
ATATGTGTTCAATTCAGCAG+TGG - chr6_4:3853683-3853702 None:intergenic 35.0%
ACCCCTGATAACATGATAAT+TGG - chr6_4:3853813-3853832 None:intergenic 35.0%
GGGTGCTTCTTATTGAATAA+AGG + chr6_4:3853939-3853958 Msa0971780:intron 35.0%
CACATAATATATGCAAGGTC+CGG + chr6_4:3854532-3854551 Msa0971780:intron 35.0%
ACATAATATATGCAAGGTCC+GGG + chr6_4:3854533-3854552 Msa0971780:intron 35.0%
CAGTAGATAGATACACTTGT+TGG + chr6_4:3854586-3854605 Msa0971780:intron 35.0%
AACTGATTACTCCTGTTCAA+TGG + chr6_4:3854654-3854673 Msa0971780:intron 35.0%
ACTAGCATCTCTATTAACAG+GGG - chr6_4:3854722-3854741 None:intergenic 35.0%
TAGAGATGCTAGTTATTTGC+AGG + chr6_4:3854729-3854748 Msa0971780:intron 35.0%
AGAGATGCTAGTTATTTGCA+GGG + chr6_4:3854730-3854749 Msa0971780:intron 35.0%
!! GTCAGAAAGTGTTTGCTATT+GGG + chr6_4:3854894-3854913 Msa0971780:CDS 35.0%
CAATATCCACCAATATGGTT+AGG - chr6_4:3854935-3854954 None:intergenic 35.0%
! GACTCTTTTCTTAGGAATTG+TGG - chr6_4:3855129-3855148 None:intergenic 35.0%
GTCTGTATAACATCTTGGAT+AGG - chr6_4:3855225-3855244 None:intergenic 35.0%
CATCAGTCTGTATAACATCT+TGG - chr6_4:3855230-3855249 None:intergenic 35.0%
!! ATAGTTCTGGAAACCTCATT+GGG + chr6_4:3855289-3855308 Msa0971780:CDS 35.0%
AATAGAAAATCCAACACCAG+AGG - chr6_4:3855349-3855368 None:intergenic 35.0%
!!! GTTTTAAAAACTGAACCGGA+TGG + chr6_4:3855415-3855434 Msa0971780:intron 35.0%
TGTCTCCTTAAAAACTGAAC+TGG - chr6_4:3855542-3855561 None:intergenic 35.0%
AGAAAGACGGTATTAATCTG+CGG - chr6_4:3855574-3855593 None:intergenic 35.0%
CAATGGCATTGTTGATCAAT+TGG + chr6_4:3855638-3855657 Msa0971780:CDS 35.0%
GTTGATCAATTGGTGAAGTT+TGG + chr6_4:3855648-3855667 Msa0971780:CDS 35.0%
! GTTTATCGCGTCTTCTTTTA+AGG + chr6_4:3856165-3856184 Msa0971780:intron 35.0%
! TCCTATGGTAGACTCATTTT+AGG + chr6_4:3856315-3856334 Msa0971780:CDS 35.0%
ACCTAAAATGAGTCTACCAT+AGG - chr6_4:3856319-3856338 None:intergenic 35.0%
GACATCATAACATCTGTGAA+TGG + chr6_4:3856339-3856358 Msa0971780:CDS 35.0%
CCTTATCACCAACTTTACAT+TGG - chr6_4:3856407-3856426 None:intergenic 35.0%
!! CCAATGTAAAGTTGGTGATA+AGG + chr6_4:3856404-3856423 Msa0971780:CDS 35.0%
!! GTAAAGTTGGTGATAAGGTA+CGG + chr6_4:3856409-3856428 Msa0971780:intron 35.0%
GTTACTACAACTTTGCTTTC+AGG - chr6_4:3856740-3856759 None:intergenic 35.0%
!! TTTAACTTTTTGGGCCTGTT+TGG - chr6_4:3857070-3857089 None:intergenic 35.0%
TGTTGATATTCAGGTGATTG+TGG + chr6_4:3857169-3857188 Msa0971780:intron 35.0%
TTGTGTTGGAGCAAATAGTA+CGG - chr6_4:3857379-3857398 None:intergenic 35.0%
!!! GATGTTTTTTGAGTGGACTG+AGG - chr6_4:3852051-3852070 None:intergenic 40.0%
!!! GGCCATTGATGTTTTTTGAG+TGG - chr6_4:3852058-3852077 None:intergenic 40.0%
TGAAGAGGAAGAAGAAGCTA+TGG - chr6_4:3852079-3852098 None:intergenic 40.0%
GAATGTGGAAATGAGTGAAG+AGG - chr6_4:3852094-3852113 None:intergenic 40.0%
GGAAGAGTTGAAGAAGAATG+TGG - chr6_4:3852109-3852128 None:intergenic 40.0%
AAGATGAAGAGATTTCGGCT+TGG - chr6_4:3852154-3852173 None:intergenic 40.0%
!!! TGGTGGTTTTGATGATGAAG+GGG - chr6_4:3852229-3852248 None:intergenic 40.0%
!!! GTGGTGGTTTTGATGATGAA+GGG - chr6_4:3852230-3852249 None:intergenic 40.0%
!!! AGTGGTGGTTTTGATGATGA+AGG - chr6_4:3852231-3852250 None:intergenic 40.0%
!!! AGTTTTGGAAGTGAAAGTGG+TGG - chr6_4:3852246-3852265 None:intergenic 40.0%
!!! GTGAGTTTTGGAAGTGAAAG+TGG - chr6_4:3852249-3852268 None:intergenic 40.0%
TGGAGGTTCTCGATTAGAAT+TGG + chr6_4:3852805-3852824 Msa0971780:intron 40.0%
! CTGGCTAAATAGTGAGTTGA+AGG + chr6_4:3853222-3853241 Msa0971780:intron 40.0%
CACTTACTTCACAGCAATGT+TGG - chr6_4:3853502-3853521 None:intergenic 40.0%
! GTGGGTATTTCTGTTTAGGA+AGG + chr6_4:3853590-3853609 Msa0971780:intron 40.0%
ATGTGTGTATGTGTTTAGGC+AGG + chr6_4:3853706-3853725 Msa0971780:intron 40.0%
TGCGTTTACTTTGGATGTGT+TGG + chr6_4:3853730-3853749 Msa0971780:CDS 40.0%
GTTTACTTTGGATGTGTTGG+AGG + chr6_4:3853733-3853752 Msa0971780:CDS 40.0%
ACAAGTACTTAGGCTGCATT+TGG - chr6_4:3854169-3854188 None:intergenic 40.0%
CATAATATATGCAAGGTCCG+GGG + chr6_4:3854534-3854553 Msa0971780:intron 40.0%
!!! CTACTGTCTTTTTTTGGTGG+TGG - chr6_4:3854572-3854591 None:intergenic 40.0%
! TAGATACACTTGTTGGCACT+TGG + chr6_4:3854593-3854612 Msa0971780:intron 40.0%
!!! CTTTTGCATCGTAGGTTGAT+TGG - chr6_4:3854769-3854788 None:intergenic 40.0%
ACCTACGATGCAAAAGTTGT+TGG + chr6_4:3854773-3854792 Msa0971780:CDS 40.0%
! ACCAACAACTTTTGCATCGT+AGG - chr6_4:3854777-3854796 None:intergenic 40.0%
!!! TGTTGGTTTTGACCAAGACA+AGG + chr6_4:3854790-3854809 Msa0971780:CDS 40.0%
!! GGTCAGAAAGTGTTTGCTAT+TGG + chr6_4:3854893-3854912 Msa0971780:CDS 40.0%
ACTTCGGCGAGAAATTAGTT+CGG + chr6_4:3855185-3855204 Msa0971780:CDS 40.0%
ACTGATGCAGCAATTAATCC+TGG + chr6_4:3855243-3855262 Msa0971780:CDS 40.0%
GCAATTAATCCTGGTAACAG+CGG + chr6_4:3855252-3855271 Msa0971780:CDS 40.0%
TTTCCAGAACTATCTAGGAG+TGG - chr6_4:3855282-3855301 None:intergenic 40.0%
TGAGGTTTCCAGAACTATCT+AGG - chr6_4:3855287-3855306 None:intergenic 40.0%
!! GATAGTTCTGGAAACCTCAT+TGG + chr6_4:3855288-3855307 Msa0971780:CDS 40.0%
TAGCCGTATTTATCCCAATG+AGG - chr6_4:3855305-3855324 None:intergenic 40.0%
GTTCAACTGATTGTACCATC+CGG - chr6_4:3855433-3855452 None:intergenic 40.0%
! GTCGTCCAGTTCAGTTTTTA+AGG + chr6_4:3855534-3855553 Msa0971780:intron 40.0%
TCAATTGGTGAAGTTTGGGA+AGG + chr6_4:3855653-3855672 Msa0971780:CDS 40.0%
AATTGCTCCACAGATTGATC+TGG - chr6_4:3855711-3855730 None:intergenic 40.0%
AGATCAATCTGTGGAGCAAT+TGG + chr6_4:3855710-3855729 Msa0971780:CDS 40.0%
GATCAATCTGTGGAGCAATT+GGG + chr6_4:3855711-3855730 Msa0971780:CDS 40.0%
AGGGTGACGAATTTGATTGA+TGG + chr6_4:3856240-3856259 Msa0971780:intron 40.0%
ACGAATTTGATTGATGGAGC+TGG + chr6_4:3856246-3856265 Msa0971780:intron 40.0%
TCAACAAAGCGTGATTCCTA+TGG + chr6_4:3856300-3856319 Msa0971780:CDS 40.0%
AAGTGAATGCCTCAATGTGT+TGG + chr6_4:3856861-3856880 Msa0971780:intron 40.0%
ATGTCATGTCCAACACATTG+AGG - chr6_4:3856873-3856892 None:intergenic 40.0%
TAAGCTCAGTCAATCCAAAC+AGG + chr6_4:3857053-3857072 Msa0971780:intron 40.0%
AGTTGCACATCATGTTTCGT+CGG - chr6_4:3857249-3857268 None:intergenic 40.0%
GGGTGAGAAAGTAAGTGAGT+TGG - chr6_4:3852186-3852205 None:intergenic 45.0%
!!! GTGGTTTTGATGATGAAGGG+GGG - chr6_4:3852227-3852246 None:intergenic 45.0%
!!! GGTGGTTTTGATGATGAAGG+GGG - chr6_4:3852228-3852247 None:intergenic 45.0%
TTGCACGTTTGGTCTGTGAT+TGG + chr6_4:3853146-3853165 Msa0971780:intron 45.0%
TAGGCAGGATGCGTTTACTT+TGG + chr6_4:3853721-3853740 Msa0971780:intron 45.0%
ATCTGGGTCAGGTTTCGTTT+GGG + chr6_4:3853766-3853785 Msa0971780:CDS 45.0%
! GTCAGGTTTCGTTTGGGATA+AGG + chr6_4:3853772-3853791 Msa0971780:CDS 45.0%
! GGTTTCGTTTGGGATAAGGA+TGG + chr6_4:3853776-3853795 Msa0971780:CDS 45.0%
!! TCATGTTATCAGGGGTGCTT+CGG + chr6_4:3853817-3853836 Msa0971780:CDS 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr6_4:3854505-3854524 Msa0971780:intron 45.0%
!!! TGTCTTTTTTTGGTGGTGGC+CGG - chr6_4:3854568-3854587 None:intergenic 45.0%
! ATTGGCCTGAGCTTGTCTTT+AGG - chr6_4:3854842-3854861 None:intergenic 45.0%
!! AGTGTTTGCTATTGGGAACC+CGG + chr6_4:3854901-3854920 Msa0971780:CDS 45.0%
GTGTTCAACCGAGATTTCCA+TGG - chr6_4:3854988-3855007 None:intergenic 45.0%
CTAGATCACACGCTTACAAC+TGG + chr6_4:3855053-3855072 Msa0971780:CDS 45.0%
CGCTTACAACTGGAGTTATC+AGG + chr6_4:3855063-3855082 Msa0971780:CDS 45.0%
GAAATTAGTTCGGCTGCAAC+TGG + chr6_4:3855195-3855214 Msa0971780:CDS 45.0%
ATTAATCCTGGTAACAGCGG+AGG + chr6_4:3855255-3855274 Msa0971780:CDS 45.0%
TTAATCCTGGTAACAGCGGA+GGG + chr6_4:3855256-3855275 Msa0971780:CDS 45.0%
ACGGCTATATACTCTCCATC+TGG + chr6_4:3855318-3855337 Msa0971780:CDS 45.0%
AACCAGCACTGTCTACAGTA+TGG + chr6_4:3855457-3855476 Msa0971780:intron 45.0%
AACCATACTGTAGACAGTGC+TGG - chr6_4:3855462-3855481 None:intergenic 45.0%
GTTTGCTCCAGATCAATCTG+TGG + chr6_4:3855701-3855720 Msa0971780:CDS 45.0%
! AGTAAGTGGAGTGCTTGTCT+TGG + chr6_4:3855734-3855753 Msa0971780:CDS 45.0%
AAACTTACTGCTTTCCCAGC+TGG - chr6_4:3855777-3855796 None:intergenic 45.0%
! TGACGGGGATCTTTTCTTTG+TGG - chr6_4:3857211-3857230 None:intergenic 45.0%
!!! AATAAAAAATAATTCAATTT+TGG + chr6_4:3852991-3853010 Msa0971780:intron 5.0%
GATTGAAGAGCGAGGGAATG+AGG - chr6_4:3852130-3852149 None:intergenic 50.0%
! GCTTGGTGATTGAAGAGCGA+GGG - chr6_4:3852137-3852156 None:intergenic 50.0%
!! TTGATGATGAAGGGGGGTGT+AGG - chr6_4:3852221-3852240 None:intergenic 50.0%
TCATCAGACTGCAGCTTCCT+AGG - chr6_4:3852384-3852403 None:intergenic 50.0%
ACTAAGTAGGGTCGGCTACT+TGG - chr6_4:3852678-3852697 None:intergenic 50.0%
GATGTGTTGGAGGTTCCTCA+GGG + chr6_4:3853743-3853762 Msa0971780:CDS 50.0%
GATCTGGGTCAGGTTTCGTT+TGG + chr6_4:3853765-3853784 Msa0971780:CDS 50.0%
!!! TCTTTTTTTGGTGGTGGCCG+GGG - chr6_4:3854566-3854585 None:intergenic 50.0%
!!! GTCTTTTTTTGGTGGTGGCC+GGG - chr6_4:3854567-3854586 None:intergenic 50.0%
GCACAGCAACATCCTTGTCT+TGG - chr6_4:3854805-3854824 None:intergenic 50.0%
AAGCTCAGGCCAATACCTGT+TGG + chr6_4:3854848-3854867 Msa0971780:CDS 50.0%
GCAGAGACACCAACAGGTAT+TGG - chr6_4:3854860-3854879 None:intergenic 50.0%
AAGTCAGCAGAGACACCAAC+AGG - chr6_4:3854866-3854885 None:intergenic 50.0%
!! GTCTCTGCTGACTTGCTTGT+TGG + chr6_4:3854872-3854891 Msa0971780:CDS 50.0%
!! TCAGAGCTCACAGTATCGAC+AGG - chr6_4:3855372-3855391 None:intergenic 50.0%
ATCCACAGTTGAACCATGCC+TGG + chr6_4:3855496-3855515 Msa0971780:intron 50.0%
GTGGAGCAATTGGGAGTAAG+TGG + chr6_4:3855720-3855739 Msa0971780:CDS 50.0%
! TTATAGAGTTAGGCGCCGTC+TGG + chr6_4:3855840-3855859 Msa0971780:intron 50.0%
! TTGGTGATAAGGTACGGTGC+TGG + chr6_4:3856415-3856434 Msa0971780:intron 50.0%
!! GTGATTGTGGAAGTGTTGCG+AGG + chr6_4:3857182-3857201 Msa0971780:CDS 50.0%
CATCATGTTTCGTCGGCCTT+CGG - chr6_4:3857242-3857261 None:intergenic 50.0%
!! GGCTTGGTGATTGAAGAGCG+AGG - chr6_4:3852138-3852157 None:intergenic 55.0%
GGTGTAGGAGGAAAAGGGTG+GGG - chr6_4:3852206-3852225 None:intergenic 55.0%
GGGTGTAGGAGGAAAAGGGT+GGG - chr6_4:3852207-3852226 None:intergenic 55.0%
! AGGGGGGTGTAGGAGGAAAA+GGG - chr6_4:3852211-3852230 None:intergenic 55.0%
! AAGGGGGGTGTAGGAGGAAA+AGG - chr6_4:3852212-3852231 None:intergenic 55.0%
! ATGATGAAGGGGGGTGTAGG+AGG - chr6_4:3852218-3852237 None:intergenic 55.0%
GGATGTGTTGGAGGTTCCTC+AGG + chr6_4:3853742-3853761 Msa0971780:CDS 55.0%
TTGGAGGTTCCTCAGGGATC+TGG + chr6_4:3853749-3853768 Msa0971780:CDS 55.0%
TGGAGGTTCCTCAGGGATCT+GGG + chr6_4:3853750-3853769 Msa0971780:CDS 55.0%
AAACCTGACCCAGATCCCTG+AGG - chr6_4:3853761-3853780 None:intergenic 55.0%
!! GCTTCGGATCTCAGGTTGGT+AGG + chr6_4:3853833-3853852 Msa0971780:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr6_4:3854503-3854522 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr6_4:3854500-3854519 Msa0971780:intron 55.0%
!! CGAACTCGGTGCCATTGAAC+AGG - chr6_4:3854668-3854687 None:intergenic 55.0%
ACGCGCCTAAAGACAAGCTC+AGG + chr6_4:3854834-3854853 Msa0971780:CDS 55.0%
GGGCCACTCCTAGATAGTTC+TGG + chr6_4:3855276-3855295 Msa0971780:CDS 55.0%
TCTCCATCTGGTGCATCCTC+TGG + chr6_4:3855330-3855349 Msa0971780:CDS 55.0%
ACACCAGAGGATGCACCAGA+TGG - chr6_4:3855336-3855355 None:intergenic 55.0%
TCTGGTGCATCCTCTGGTGT+TGG + chr6_4:3855336-3855355 Msa0971780:CDS 55.0%
CACCAGGCATGGTTCAACTG+TGG - chr6_4:3855501-3855520 None:intergenic 55.0%
CACAGTTGAACCATGCCTGG+TGG + chr6_4:3855499-3855518 Msa0971780:intron 55.0%
GGGGTGTAGGAGGAAAAGGG+TGG - chr6_4:3852208-3852227 None:intergenic 60.0%
GTTCCTCAGGGATCTGGGTC+AGG + chr6_4:3853755-3853774 Msa0971780:CDS 60.0%
!! TCAGGGGTGCTTCGGATCTC+AGG + chr6_4:3853825-3853844 Msa0971780:CDS 60.0%
GGGTGCTTCGGATCTCAGGT+TGG + chr6_4:3853829-3853848 Msa0971780:intron 60.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr6_4:3854546-3854565 Msa0971780:intron 60.0%
! ACCATGCCTGGTGGTCTTGC+TGG + chr6_4:3855508-3855527 Msa0971780:intron 60.0%
ACCAGCAAGACCACCAGGCA+TGG - chr6_4:3855512-3855531 None:intergenic 60.0%
GACGAACCAGCAAGACCACC+AGG - chr6_4:3855517-3855536 None:intergenic 60.0%
GTCTTGGATGCTCCTGCCAC+TGG + chr6_4:3855750-3855769 Msa0971780:CDS 60.0%
TGCTTTCCCAGCTGGACCAG+TGG - chr6_4:3855769-3855788 None:intergenic 60.0%
! CCTTCGGCTCGAGAATGACG+GGG - chr6_4:3857226-3857245 None:intergenic 60.0%
! GCCTTCGGCTCGAGAATGAC+GGG - chr6_4:3857227-3857246 None:intergenic 60.0%
! GGCCTTCGGCTCGAGAATGA+CGG - chr6_4:3857228-3857247 None:intergenic 60.0%
AGTGGCCCTCCGCTGTTACC+AGG - chr6_4:3855264-3855283 None:intergenic 65.0%
CTCCTGCCACTGGTCCAGCT+GGG + chr6_4:3855760-3855779 Msa0971780:CDS 65.0%
TTCCCAGCTGGACCAGTGGC+AGG - chr6_4:3855765-3855784 None:intergenic 65.0%
CCCCGTCATTCTCGAGCCGA+AGG + chr6_4:3857223-3857242 Msa0971780:CDS 65.0%
GGTGGCCGGGGTTTGAACCC+CGG - chr6_4:3854554-3854573 None:intergenic 70.0%
GCTCCTGCCACTGGTCCAGC+TGG + chr6_4:3855759-3855778 Msa0971780:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 3852039 3857614 3852039 ID=Msa0971780;Name=Msa0971780
chr6_4 mRNA 3852039 3857614 3852039 ID=Msa0971780-mRNA-1;Parent=Msa0971780;Name=Msa0971780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=33|1|1|1|1|1|8|355|432
chr6_4 exon 3852039 3852472 3852039 ID=Msa0971780-mRNA-1:exon:1666;Parent=Msa0971780-mRNA-1
chr6_4 exon 3853724 3853846 3853724 ID=Msa0971780-mRNA-1:exon:1667;Parent=Msa0971780-mRNA-1
chr6_4 exon 3854751 3854922 3854751 ID=Msa0971780-mRNA-1:exon:1668;Parent=Msa0971780-mRNA-1
chr6_4 exon 3855047 3855084 3855047 ID=Msa0971780-mRNA-1:exon:1669;Parent=Msa0971780-mRNA-1
chr6_4 exon 3855182 3855380 3855182 ID=Msa0971780-mRNA-1:exon:1670;Parent=Msa0971780-mRNA-1
chr6_4 exon 3855636 3855788 3855636 ID=Msa0971780-mRNA-1:exon:1671;Parent=Msa0971780-mRNA-1
chr6_4 exon 3856291 3856425 3856291 ID=Msa0971780-mRNA-1:exon:1672;Parent=Msa0971780-mRNA-1
chr6_4 exon 3857182 3857614 3857182 ID=Msa0971780-mRNA-1:exon:1673;Parent=Msa0971780-mRNA-1
chr6_4 five_prime_UTR 3852039 3852071 3852039 ID=Msa0971780-mRNA-1:five_prime_utr;Parent=Msa0971780-mRNA-1
chr6_4 CDS 3852072 3852472 3852072 ID=Msa0971780-mRNA-1:cds;Parent=Msa0971780-mRNA-1
chr6_4 CDS 3853724 3853846 3853724 ID=Msa0971780-mRNA-1:cds;Parent=Msa0971780-mRNA-1
chr6_4 CDS 3854751 3854922 3854751 ID=Msa0971780-mRNA-1:cds;Parent=Msa0971780-mRNA-1
chr6_4 CDS 3855047 3855084 3855047 ID=Msa0971780-mRNA-1:cds;Parent=Msa0971780-mRNA-1
chr6_4 CDS 3855182 3855380 3855182 ID=Msa0971780-mRNA-1:cds;Parent=Msa0971780-mRNA-1
chr6_4 CDS 3855636 3855788 3855636 ID=Msa0971780-mRNA-1:cds;Parent=Msa0971780-mRNA-1
chr6_4 CDS 3856291 3856425 3856291 ID=Msa0971780-mRNA-1:cds;Parent=Msa0971780-mRNA-1
chr6_4 CDS 3857182 3857259 3857182 ID=Msa0971780-mRNA-1:cds;Parent=Msa0971780-mRNA-1
chr6_4 three_prime_UTR 3857260 3857614 3857260 ID=Msa0971780-mRNA-1:three_prime_utr;Parent=Msa0971780-mRNA-1
Gene Sequence

>Msa0971780

ATGGCCATAGCTTCTTCTTCCTCTTCACTCATTTCCACATTCTTCTTCAACTCTTCCTCATTCCCTCGCTCTTCAATCACCAAGCCGAAATCTCTTCATCTTCATCACACACCAACTCACTTACTTTCTCACCCCACCCTTTTCCTCCTACACCCCCCTTCATCATCAAAACCACCACTTTCACTTCCAAAACTCACTATACCAAAAACATGCTTTGATTCTGTACTCATTCTATGTACTTCACTTGCACTATCTTTGACTCTCTTCATTTCAAATGTTGATTCAGCTTCTGCTTTTGTTGTAAATGCTCCTAGGAAGCTGCAGTCTGATGAACTTGCTACTGTTCGTTTGTTTCAAGAGAATACTCCTTCTGTTGTTTATATAACTAACCTTGCTGTTAAGCAGGATGCGTTTACTTTGGATGTGTTGGAGGTTCCTCAGGGATCTGGGTCAGGTTTCGTTTGGGATAAGGATGGTCATATAGTCACCAATTATCATGTTATCAGGGGTGCTTCGGATCTCAGGGTCACTCTTGCTGACCAATCAACCTACGATGCAAAAGTTGTTGGTTTTGACCAAGACAAGGATGTTGCTGTGCTGCGTGTTGACGCGCCTAAAGACAAGCTCAGGCCAATACCTGTTGGTGTCTCTGCTGACTTGCTTGTTGGTCAGAAAGTGTTTGCTATTGGGAACCCGTTTGGACTAGATCACACGCTTACAACTGGAGTTATCAGTGGACTTCGGCGAGAAATTAGTTCGGCTGCAACTGGTCGTCCTATCCAAGATGTTATACAGACTGATGCAGCAATTAATCCTGGTAACAGCGGAGGGCCACTCCTAGATAGTTCTGGAAACCTCATTGGGATAAATACGGCTATATACTCTCCATCTGGTGCATCCTCTGGTGTTGGATTTTCTATTCCTGTCGATACTGTCAATGGCATTGTTGATCAATTGGTGAAGTTTGGGAAGGTTACTAGACCTATATTAGGAATCAAGTTTGCTCCAGATCAATCTGTGGAGCAATTGGGAGTAAGTGGAGTGCTTGTCTTGGATGCTCCTGCCACTGGTCCAGCTGGGAAAGCAGGCTTACAATCAACAAAGCGTGATTCCTATGGTAGACTCATTTTAGGTGACATCATAACATCTGTGAATGGTAATAAGGTTTCTAATGGAAGTGATTTGTACAGAATTCTTGACCAATGTAAAGTTGGTGATAAGGTGATTGTGGAAGTGTTGCGAGGCGACCACAAAGAAAAGATCCCCGTCATTCTCGAGCCGAAGGCCGACGAAACATGA

Protein sequence

>Msa0971780

MAIASSSSSLISTFFFNSSSFPRSSITKPKSLHLHHTPTHLLSHPTLFLLHPPSSSKPPLSLPKLTIPKTCFDSVLILCTSLALSLTLFISNVDSASAFVVNAPRKLQSDELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEVPQGSGSGFVWDKDGHIVTNYHVIRGASDLRVTLADQSTYDAKVVGFDQDKDVAVLRVDAPKDKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPATGPAGKAGLQSTKRDSYGRLILGDIITSVNGNKVSNGSDLYRILDQCKVGDKVIVEVLRGDHKEKIPVILEPKADET*