Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338700 | ACM50914.1 | 98.955 | 287 | 3 | 0 | 1 | 287 | 1 | 287 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338700 | sp|Q9ATM4|PIP27_MAIZE | 89.583 | 288 | 28 | 2 | 1 | 287 | 1 | 287 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003640 | Msa0338700 | -0.800941 | 1.137818e-48 | -8.615850e-47 |
| Msa0027770 | Msa0338700 | -0.809398 | 1.930400e-50 | -8.615850e-47 |
| Msa0075500 | Msa0338700 | -0.806584 | 7.663194e-50 | -8.615850e-47 |
| Msa0091250 | Msa0338700 | 0.827726 | 1.333894e-54 | -8.615850e-47 |
| Msa0105620 | Msa0338700 | -0.800401 | 1.466684e-48 | -8.615850e-47 |
| Msa0245310 | Msa0338700 | -0.844941 | 5.533621e-59 | -8.615850e-47 |
| Msa0338700 | Msa0387910 | -0.805166 | 1.522181e-49 | -8.615850e-47 |
| Msa0338700 | Msa0397540 | -0.808820 | 2.566417e-50 | -8.615850e-47 |
| Msa0338700 | Msa0467220 | -0.818662 | 1.743663e-52 | -8.615850e-47 |
| Msa0338700 | Msa0473830 | 0.820845 | 5.531208e-53 | -8.615850e-47 |
| Msa0338700 | Msa0518070 | 0.817379 | 3.400473e-52 | -8.615850e-47 |
| Msa0338700 | Msa0542090 | -0.814333 | 1.624892e-51 | -8.615850e-47 |
| Msa0338700 | Msa0542130 | -0.811167 | 8.015742e-51 | -8.615850e-47 |
| Msa0338700 | Msa0621080 | 0.801826 | 7.497435e-49 | -8.615850e-47 |
| Msa0338700 | Msa0671740 | -0.811117 | 8.219174e-51 | -8.615850e-47 |
| Msa0338700 | Msa0685140 | -0.808346 | 3.239951e-50 | -8.615850e-47 |
| Msa0338700 | Msa0722920 | -0.817291 | 3.559445e-52 | -8.615850e-47 |
| Msa0338700 | Msa0784860 | -0.851980 | 6.231130e-61 | -8.615850e-47 |
| Msa0338700 | Msa0870150 | -0.837135 | 6.215578e-57 | -8.615850e-47 |
| Msa0338700 | Msa0945440 | -0.801206 | 1.004434e-48 | -8.615850e-47 |
| Msa0338700 | Msa1009820 | -0.812745 | 3.631748e-51 | -8.615850e-47 |
| Msa0338700 | Msa1051200 | -0.817502 | 3.189317e-52 | -8.615850e-47 |
| Msa0338700 | Msa1088290 | -0.813297 | 2.749043e-51 | -8.615850e-47 |
| Msa0338700 | Msa1143930 | 0.813933 | 1.991723e-51 | -8.615850e-47 |
| Msa0338700 | Msa1224810 | -0.800066 | 1.715445e-48 | -8.615850e-47 |
| Msa0338700 | Msa1299180 | 0.800326 | 1.519136e-48 | -8.615850e-47 |
| Msa0338700 | Msa1302100 | -0.826110 | 3.246810e-54 | -8.615850e-47 |
| Msa0338700 | Msa1359630 | -0.804848 | 1.773536e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338700 | MtrunA17_Chr2g0326621 | 97.909 | 287 | 6 | 0 | 1 | 287 | 1 | 287 | 0.0 | 573 |
| Msa0338700 | MtrunA17_Chr4g0029071 | 85.366 | 287 | 40 | 2 | 1 | 287 | 1 | 285 | 3.20e-180 | 497 |
| Msa0338700 | MtrunA17_Chr7g0264111 | 80.488 | 287 | 54 | 2 | 1 | 287 | 1 | 285 | 3.62e-173 | 479 |
| Msa0338700 | MtrunA17_Chr1g0199731 | 77.273 | 286 | 63 | 2 | 1 | 286 | 1 | 284 | 5.45e-166 | 461 |
| Msa0338700 | MtrunA17_Chr3g0145671 | 77.037 | 270 | 55 | 1 | 17 | 286 | 14 | 276 | 4.93e-154 | 431 |
| Msa0338700 | MtrunA17_Chr8g0386961 | 67.384 | 279 | 81 | 3 | 3 | 278 | 13 | 284 | 4.55e-136 | 386 |
| Msa0338700 | MtrunA17_Chr5g0397391 | 68.519 | 270 | 77 | 2 | 11 | 279 | 23 | 285 | 1.89e-135 | 384 |
| Msa0338700 | MtrunA17_Chr5g0436701 | 69.318 | 264 | 73 | 2 | 17 | 279 | 32 | 288 | 6.43e-134 | 380 |
| Msa0338700 | MtrunA17_Chr4g0006001 | 67.037 | 270 | 82 | 1 | 10 | 279 | 26 | 288 | 7.25e-134 | 380 |
| Msa0338700 | MtrunA17_Chr3g0113211 | 68.182 | 264 | 76 | 2 | 17 | 279 | 32 | 288 | 1.31e-132 | 377 |
| Msa0338700 | MtrunA17_Chr2g0331261 | 36.800 | 250 | 133 | 6 | 31 | 275 | 11 | 240 | 3.37e-40 | 140 |
| Msa0338700 | MtrunA17_Chr1g0212671 | 39.024 | 246 | 125 | 7 | 32 | 272 | 13 | 238 | 1.61e-38 | 135 |
| Msa0338700 | MtrunA17_Chr8g0340161 | 37.449 | 243 | 127 | 6 | 31 | 268 | 10 | 232 | 5.93e-38 | 134 |
| Msa0338700 | MtrunA17_Chr1g0188771 | 37.860 | 243 | 134 | 6 | 31 | 272 | 12 | 238 | 3.38e-37 | 132 |
| Msa0338700 | MtrunA17_Chr5g0399341 | 40.161 | 249 | 129 | 9 | 28 | 275 | 9 | 238 | 2.92e-36 | 130 |
| Msa0338700 | MtrunA17_Chr4g0030861 | 36.777 | 242 | 127 | 8 | 45 | 280 | 26 | 247 | 5.92e-36 | 129 |
| Msa0338700 | MtrunA17_Chr7g0264961 | 35.060 | 251 | 145 | 6 | 31 | 280 | 12 | 245 | 4.45e-35 | 127 |
| Msa0338700 | MtrunA17_Chr7g0222791 | 37.917 | 240 | 124 | 7 | 40 | 274 | 21 | 240 | 1.58e-34 | 125 |
| Msa0338700 | MtrunA17_Chr6g0478191 | 37.705 | 244 | 135 | 6 | 30 | 272 | 11 | 238 | 3.00e-33 | 122 |
| Msa0338700 | MtrunA17_Chr1g0146171 | 34.884 | 258 | 136 | 11 | 30 | 280 | 9 | 241 | 1.68e-31 | 117 |
| Msa0338700 | MtrunA17_Chr1g0146161 | 35.341 | 249 | 133 | 9 | 30 | 273 | 9 | 234 | 4.11e-31 | 116 |
| Msa0338700 | MtrunA17_Chr5g0435051 | 28.996 | 269 | 167 | 7 | 3 | 271 | 4 | 248 | 2.67e-23 | 96.3 |
| Msa0338700 | MtrunA17_Chr5g0426131 | 32.474 | 194 | 118 | 4 | 80 | 271 | 65 | 247 | 1.32e-22 | 94.4 |
| Msa0338700 | MtrunA17_Chr4g0001221 | 29.225 | 284 | 159 | 7 | 9 | 284 | 55 | 304 | 1.41e-21 | 92.0 |
| Msa0338700 | MtrunA17_Chr2g0333771 | 30.667 | 225 | 131 | 6 | 38 | 261 | 78 | 278 | 1.58e-21 | 92.0 |
| Msa0338700 | MtrunA17_Chr4g0020781 | 35.000 | 200 | 101 | 6 | 80 | 272 | 18 | 195 | 3.61e-20 | 86.7 |
| Msa0338700 | MtrunA17_Chr3g0079421 | 32.812 | 192 | 109 | 5 | 84 | 271 | 59 | 234 | 5.27e-20 | 87.0 |
| Msa0338700 | MtrunA17_Chr8g0379901 | 29.956 | 227 | 135 | 5 | 40 | 265 | 39 | 242 | 5.59e-20 | 87.4 |
| Msa0338700 | MtrunA17_Chr2g0284631 | 28.870 | 239 | 138 | 6 | 38 | 271 | 89 | 300 | 1.27e-19 | 87.0 |
| Msa0338700 | MtrunA17_Chr1g0201331 | 30.279 | 251 | 140 | 7 | 37 | 286 | 71 | 287 | 2.15e-19 | 86.3 |
| Msa0338700 | MtrunA17_Chr8g0379911 | 26.749 | 243 | 156 | 5 | 29 | 271 | 27 | 247 | 1.37e-18 | 83.2 |
| Msa0338700 | MtrunA17_Chr2g0284591 | 29.778 | 225 | 134 | 5 | 38 | 261 | 34 | 235 | 2.57e-18 | 82.8 |
| Msa0338700 | MtrunA17_Chr4g0044201 | 31.250 | 192 | 99 | 5 | 84 | 271 | 71 | 233 | 1.72e-17 | 80.1 |
| Msa0338700 | MtrunA17_Chr7g0217331 | 29.150 | 247 | 140 | 8 | 30 | 265 | 17 | 239 | 2.20e-17 | 80.1 |
| Msa0338700 | MtrunA17_Chr2g0284611 | 32.275 | 189 | 115 | 4 | 74 | 261 | 61 | 237 | 8.89e-17 | 78.2 |
| Msa0338700 | MtrunA17_Chr2g0284601 | 31.844 | 179 | 108 | 4 | 84 | 261 | 24 | 189 | 4.04e-16 | 75.9 |
| Msa0338700 | MtrunA17_Chr2g0284581 | 30.337 | 178 | 112 | 3 | 84 | 261 | 72 | 237 | 6.87e-16 | 75.9 |
| Msa0338700 | MtrunA17_Chr1g0184541 | 27.155 | 232 | 146 | 5 | 40 | 271 | 62 | 270 | 3.49e-15 | 74.3 |
| Msa0338700 | MtrunA17_Chr4g0038591 | 27.778 | 180 | 116 | 6 | 94 | 261 | 95 | 272 | 2.36e-14 | 72.0 |
| Msa0338700 | MtrunA17_Chr4g0038611 | 26.923 | 182 | 119 | 6 | 94 | 263 | 32 | 211 | 1.82e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338700 | AT5G60660.1 | 77.544 | 285 | 62 | 2 | 1 | 285 | 1 | 283 | 4.75e-165 | 459 |
| Msa0338700 | AT2G37170.2 | 78.049 | 287 | 59 | 2 | 1 | 287 | 44 | 326 | 4.87e-165 | 461 |
| Msa0338700 | AT2G37170.1 | 78.049 | 287 | 59 | 2 | 1 | 287 | 1 | 283 | 7.88e-165 | 459 |
| Msa0338700 | AT3G53420.1 | 77.700 | 287 | 62 | 2 | 1 | 287 | 1 | 285 | 1.27e-162 | 453 |
| Msa0338700 | AT3G53420.2 | 77.700 | 287 | 62 | 2 | 1 | 287 | 1 | 285 | 1.27e-162 | 453 |
| Msa0338700 | AT2G37180.1 | 76.307 | 287 | 64 | 2 | 1 | 287 | 1 | 283 | 2.54e-161 | 450 |
| Msa0338700 | AT4G35100.1 | 76.596 | 282 | 59 | 1 | 6 | 287 | 4 | 278 | 6.91e-161 | 449 |
| Msa0338700 | AT4G35100.2 | 76.596 | 282 | 59 | 1 | 6 | 287 | 4 | 278 | 6.91e-161 | 449 |
| Msa0338700 | AT3G54820.1 | 74.021 | 281 | 72 | 1 | 6 | 286 | 4 | 283 | 6.93e-158 | 441 |
| Msa0338700 | AT2G39010.1 | 72.028 | 286 | 77 | 2 | 1 | 286 | 1 | 283 | 2.56e-155 | 435 |
| Msa0338700 | AT2G16850.1 | 75.801 | 281 | 59 | 2 | 6 | 286 | 4 | 275 | 5.90e-155 | 434 |
| Msa0338700 | AT4G00430.1 | 68.657 | 268 | 77 | 1 | 12 | 279 | 25 | 285 | 2.59e-136 | 387 |
| Msa0338700 | AT2G45960.1 | 68.821 | 263 | 75 | 1 | 17 | 279 | 29 | 284 | 1.51e-133 | 380 |
| Msa0338700 | AT4G23400.1 | 68.284 | 268 | 78 | 1 | 12 | 279 | 25 | 285 | 9.35e-128 | 365 |
| Msa0338700 | AT1G01620.1 | 69.811 | 265 | 73 | 1 | 15 | 279 | 27 | 284 | 1.41e-127 | 365 |
| Msa0338700 | AT3G61430.2 | 68.061 | 263 | 77 | 1 | 17 | 279 | 29 | 284 | 3.09e-124 | 356 |
| Msa0338700 | AT3G61430.1 | 68.061 | 263 | 77 | 1 | 17 | 279 | 29 | 284 | 3.09e-124 | 356 |
| Msa0338700 | AT2G45960.2 | 70.513 | 234 | 62 | 1 | 17 | 250 | 29 | 255 | 1.85e-119 | 343 |
| Msa0338700 | AT2G45960.3 | 70.513 | 234 | 62 | 1 | 17 | 250 | 29 | 255 | 2.44e-118 | 342 |
| Msa0338700 | AT1G01620.2 | 74.384 | 203 | 52 | 0 | 77 | 279 | 10 | 212 | 4.89e-110 | 317 |
| Msa0338700 | AT2G39010.2 | 69.118 | 204 | 60 | 2 | 1 | 204 | 1 | 201 | 9.03e-100 | 291 |
| Msa0338700 | AT4G00430.2 | 68.020 | 197 | 56 | 1 | 12 | 208 | 25 | 214 | 3.60e-92 | 272 |
| Msa0338700 | AT5G47450.1 | 39.837 | 246 | 130 | 8 | 31 | 275 | 11 | 239 | 8.05e-40 | 139 |
| Msa0338700 | AT3G26520.1 | 37.652 | 247 | 129 | 8 | 31 | 272 | 13 | 239 | 1.95e-38 | 136 |
| Msa0338700 | AT3G16240.1 | 38.189 | 254 | 130 | 8 | 28 | 276 | 9 | 240 | 4.75e-38 | 135 |
| Msa0338700 | AT4G01470.1 | 37.349 | 249 | 131 | 7 | 32 | 275 | 13 | 241 | 1.81e-37 | 133 |
| Msa0338700 | AT2G36830.1 | 36.066 | 244 | 131 | 8 | 31 | 269 | 12 | 235 | 2.33e-36 | 130 |
| Msa0338700 | AT1G17810.1 | 38.710 | 248 | 130 | 7 | 31 | 272 | 15 | 246 | 4.01e-36 | 130 |
| Msa0338700 | AT1G73190.1 | 39.344 | 244 | 134 | 7 | 31 | 272 | 15 | 246 | 5.76e-36 | 130 |
| Msa0338700 | AT4G17340.1 | 38.735 | 253 | 123 | 10 | 31 | 275 | 11 | 239 | 1.89e-35 | 128 |
| Msa0338700 | AT2G25810.1 | 37.705 | 244 | 129 | 9 | 31 | 272 | 10 | 232 | 1.77e-32 | 120 |
| Msa0338700 | AT3G47440.1 | 32.766 | 235 | 138 | 7 | 40 | 272 | 23 | 239 | 1.04e-23 | 97.4 |
| Msa0338700 | AT4G10380.1 | 30.830 | 253 | 146 | 8 | 37 | 284 | 75 | 303 | 2.00e-20 | 89.4 |
| Msa0338700 | AT1G80760.1 | 30.870 | 230 | 134 | 6 | 37 | 265 | 77 | 282 | 5.31e-19 | 85.5 |
| Msa0338700 | AT4G19030.1 | 27.206 | 272 | 164 | 7 | 1 | 265 | 21 | 265 | 1.59e-18 | 84.0 |
| Msa0338700 | AT5G37820.1 | 32.203 | 177 | 108 | 3 | 84 | 260 | 77 | 241 | 3.28e-18 | 82.8 |
| Msa0338700 | AT5G37820.2 | 32.203 | 177 | 108 | 3 | 84 | 260 | 113 | 277 | 5.14e-18 | 82.8 |
| Msa0338700 | AT1G31885.1 | 26.217 | 267 | 167 | 6 | 3 | 261 | 5 | 249 | 2.73e-17 | 80.9 |
| Msa0338700 | AT3G06100.1 | 29.278 | 263 | 146 | 10 | 24 | 271 | 18 | 255 | 1.84e-15 | 75.1 |
| Msa0338700 | AT1G31885.2 | 29.189 | 185 | 112 | 4 | 84 | 261 | 23 | 195 | 3.18e-15 | 74.3 |
| Msa0338700 | AT5G37810.1 | 28.814 | 177 | 114 | 3 | 84 | 260 | 77 | 241 | 9.74e-15 | 73.2 |
| Msa0338700 | AT4G18910.1 | 29.082 | 196 | 127 | 4 | 74 | 265 | 75 | 262 | 2.13e-14 | 72.4 |
| Msa0338700 | AT2G34390.1 | 29.648 | 199 | 120 | 5 | 80 | 271 | 78 | 263 | 7.41e-14 | 70.9 |
| Msa0338700 | AT2G34390.2 | 29.648 | 199 | 120 | 5 | 80 | 271 | 36 | 221 | 7.95e-14 | 70.1 |
| Msa0338700 | AT3G06100.2 | 29.870 | 231 | 136 | 8 | 43 | 271 | 1 | 207 | 5.52e-13 | 67.4 |
Find 118 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGGACCCCATGTAATTT+TGG | 0.167779 | 2_4:+59116318 | None:intergenic |
| TTGGGAATTGCTTGGGCTTT+TGG | 0.184687 | 2_4:-59118218 | Msa0338700:CDS |
| ATGATACTGTTATTCTTAAA+AGG | 0.198224 | 2_4:+59116445 | None:intergenic |
| GGCCCTATGTGTTTGGAATT+TGG | 0.200363 | 2_4:-59116355 | Msa0338700:three_prime_UTR |
| GCTTTAGGTGCTGAAATTAT+TGG | 0.205846 | 2_4:-59117238 | Msa0338700:CDS |
| GAGTAGAAATATGGTATTTA+AGG | 0.235268 | 2_4:+59118576 | None:intergenic |
| TATTGGGTTGGACCATTTAT+TGG | 0.240800 | 2_4:-59116605 | Msa0338700:CDS |
| CATTGGATTTGCTGTGTTCA+TGG | 0.263142 | 2_4:-59117010 | Msa0338700:CDS |
| TACATAGTTGCACAATGTTT+AGG | 0.263416 | 2_4:-59117364 | Msa0338700:CDS |
| GAATCCCTTGCACTTCTCTT+AGG | 0.275040 | 2_4:+59117175 | None:intergenic |
| AATTATTGGTACCTTTGTTT+TGG | 0.281067 | 2_4:-59117224 | Msa0338700:CDS |
| ATGTGATGGTGTTGGTGTTT+TGG | 0.290329 | 2_4:-59118237 | Msa0338700:CDS |
| ACATAGTTGCACAATGTTTA+GGG | 0.300531 | 2_4:-59117363 | Msa0338700:CDS |
| TTAATACCGGTTCCGGTAAC+GGG | 0.301515 | 2_4:+59116970 | None:intergenic |
| GCCACAGCAGCACCAATAAA+TGG | 0.305067 | 2_4:+59116593 | None:intergenic |
| ATTAATCCGGCTGTGACCTT+TGG | 0.317968 | 2_4:-59117430 | Msa0338700:CDS |
| TACAGCAAAGGCACTGCTTT+AGG | 0.327959 | 2_4:-59117253 | Msa0338700:CDS |
| CTTTAATTGCTGATCCTCTA+AGG | 0.336597 | 2_4:+59116549 | None:intergenic |
| AAATAAAGAAACAAGTAAAA+TGG | 0.337630 | 2_4:+59116140 | None:intergenic |
| GACGCAAGGTGTCTTTAATA+AGG | 0.346429 | 2_4:-59117396 | Msa0338700:CDS |
| TACCACCAATACATCCTTAG+AGG | 0.364277 | 2_4:-59116563 | Msa0338700:CDS |
| ATTAACCCTGCCAGGAGTTT+CGG | 0.367349 | 2_4:-59116952 | Msa0338700:CDS |
| TTAATCCGGCTGTGACCTTT+GGG | 0.374502 | 2_4:-59117429 | Msa0338700:CDS |
| TTAAAGCTCTTGGATCCTTC+AGG | 0.374939 | 2_4:-59116532 | Msa0338700:CDS |
| AATTATTATCTATGAGTTGT+TGG | 0.379580 | 2_4:-59116476 | Msa0338700:three_prime_UTR |
| TTGGCTACCATCCCCGTTAC+CGG | 0.382800 | 2_4:-59116982 | Msa0338700:CDS |
| TTGTCTACTATAACCAATAA+TGG | 0.395007 | 2_4:+59118289 | None:intergenic |
| CAAAGTGATACCACTATTGA+TGG | 0.396366 | 2_4:-59118269 | Msa0338700:CDS |
| TACTGCACCGCCGGTATCTC+TGG | 0.405894 | 2_4:-59118173 | Msa0338700:intron |
| GGCAGGGTTAATACCGGTTC+CGG | 0.411773 | 2_4:+59116963 | None:intergenic |
| ACCTGTTGTAGTATGATGTT+TGG | 0.416334 | 2_4:+59117308 | None:intergenic |
| TGCTGTGTTCATGGTTCACT+TGG | 0.419837 | 2_4:-59117001 | Msa0338700:CDS |
| GGATCAGCAATTAAAGCTCT+TGG | 0.421288 | 2_4:-59116542 | Msa0338700:CDS |
| GCTTAATGAATGAATATGTT+TGG | 0.422710 | 2_4:-59116503 | Msa0338700:exon |
| TTAGGGGCAATTTGTGGTGC+TGG | 0.425591 | 2_4:-59117346 | Msa0338700:CDS |
| ACCATCCCCGTTACCGGAAC+CGG | 0.431862 | 2_4:-59116976 | Msa0338700:CDS |
| TTGATGAATGAGTAGAAATA+TGG | 0.435022 | 2_4:+59118567 | None:intergenic |
| TCCAAACATCATACTACAAC+AGG | 0.436170 | 2_4:-59117309 | Msa0338700:CDS |
| GTGACCTTTGGGCTACTTGT+GGG | 0.444343 | 2_4:-59117418 | Msa0338700:CDS |
| TATCTATGAGTTGTTGGTGT+TGG | 0.447112 | 2_4:-59116470 | Msa0338700:three_prime_UTR |
| AACATTGTGCAACTATGTAT+AGG | 0.447752 | 2_4:+59117368 | None:intergenic |
| CTGATCCTCTAAGGATGTAT+TGG | 0.458362 | 2_4:+59116558 | None:intergenic |
| TCGTAATGGCCCTATGTGTT+TGG | 0.461650 | 2_4:-59116362 | Msa0338700:three_prime_UTR |
| TTTCTCGTTGTTGAAGATAA+CGG | 0.466959 | 2_4:+59116924 | None:intergenic |
| TCTTCAACAACGAGAAAGCC+TGG | 0.469896 | 2_4:-59116918 | Msa0338700:CDS |
| TATGTGTTTGGAATTTGGAT+TGG | 0.469993 | 2_4:-59116350 | Msa0338700:three_prime_UTR |
| ACGCAAGGTGTCTTTAATAA+GGG | 0.480415 | 2_4:-59117395 | Msa0338700:CDS |
| GTTCAGTGGATTTATTGGGT+TGG | 0.486574 | 2_4:-59116617 | Msa0338700:intron |
| CATATTGAGTAGTTGTCTAC+TGG | 0.487507 | 2_4:-59116425 | Msa0338700:three_prime_UTR |
| TTTCAATCCCATGTTCGTAA+TGG | 0.492704 | 2_4:-59116376 | Msa0338700:three_prime_UTR |
| GTTAATACCGGTTCCGGTAA+CGG | 0.493609 | 2_4:+59116969 | None:intergenic |
| ATCCTTGTTTACTGCACCGC+CGG | 0.493683 | 2_4:-59118182 | Msa0338700:CDS |
| ACCATTTATTGGTGCTGCTG+TGG | 0.499187 | 2_4:-59116594 | Msa0338700:CDS |
| CGAGAAAGCCTGGGATGACC+AGG | 0.500829 | 2_4:-59116908 | Msa0338700:intron |
| AAGGTGCTGGTGGTGGATCT+TGG | 0.504697 | 2_4:+59118408 | None:intergenic |
| TGGTCAAAACAGTGATGTAA+AGG | 0.506435 | 2_4:+59118309 | None:intergenic |
| GCTGGTCCGAAACTCCTGGC+AGG | 0.507858 | 2_4:+59116946 | None:intergenic |
| TGTGACCTTTGGGCTACTTG+TGG | 0.507890 | 2_4:-59117419 | Msa0338700:CDS |
| TTCAGTGTTACCATCAATAG+TGG | 0.507930 | 2_4:+59118259 | None:intergenic |
| AGTTGTCTACTGGTCCCTCA+TGG | 0.512268 | 2_4:-59116415 | Msa0338700:three_prime_UTR |
| ATCCTCTAAGGATGTATTGG+TGG | 0.516154 | 2_4:+59116561 | None:intergenic |
| AACGGCTGGTCCGAAACTCC+TGG | 0.517472 | 2_4:+59116942 | None:intergenic |
| TGTGGTGCTGGACTTGCAAA+GGG | 0.519215 | 2_4:-59117334 | Msa0338700:CDS |
| ACCGGTTCCGGTAACGGGGA+TGG | 0.524302 | 2_4:+59116975 | None:intergenic |
| TGAATTTACCTGGTCATCCC+AGG | 0.527070 | 2_4:+59116900 | None:intergenic |
| AGGTGCTGAATTTACAGCTA+AGG | 0.531268 | 2_4:-59118435 | Msa0338700:CDS |
| ATTTGATACTTACAGGAACA+TGG | 0.531612 | 2_4:+59117152 | None:intergenic |
| GGAGTTAACATGGTTTCTGA+TGG | 0.539576 | 2_4:-59117277 | Msa0338700:CDS |
| GTATTGGCACCACTTCCCAT+TGG | 0.539984 | 2_4:-59117027 | Msa0338700:CDS |
| AATCCAAATTCCAAACACAT+AGG | 0.540210 | 2_4:+59116352 | None:intergenic |
| TCTGTATCAAACAAAGGTGC+TGG | 0.540263 | 2_4:+59118395 | None:intergenic |
| ACATAGGGCCATTACGAACA+TGG | 0.540754 | 2_4:+59116368 | None:intergenic |
| TGTAGGAGGACACATTAATC+CGG | 0.545266 | 2_4:-59117443 | Msa0338700:intron |
| TGGGCTACTTGTGGGACGCA+AGG | 0.546015 | 2_4:-59117410 | Msa0338700:CDS |
| CAATGTTTAGGGGCAATTTG+TGG | 0.547275 | 2_4:-59117352 | Msa0338700:CDS |
| TCAAACAAAGGTGCTGGTGG+TGG | 0.551907 | 2_4:+59118401 | None:intergenic |
| TTGTGGTGCTGGACTTGCAA+AGG | 0.552913 | 2_4:-59117335 | Msa0338700:CDS |
| ATAAAGAAGCCAAAATTACA+TGG | 0.553497 | 2_4:-59116327 | Msa0338700:three_prime_UTR |
| TCATTAAGCATTGCTCCTGA+AGG | 0.558367 | 2_4:+59116517 | None:intergenic |
| ATCCAAATTCCAAACACATA+GGG | 0.562751 | 2_4:+59116353 | None:intergenic |
| CGGTAGCTTACCAGAGATAC+CGG | 0.562926 | 2_4:+59118163 | None:intergenic |
| GAACCGGTATTAACCCTGCC+AGG | 0.563096 | 2_4:-59116960 | Msa0338700:CDS |
| ATGAACACAGCAAATCCAAT+GGG | 0.564667 | 2_4:+59117012 | None:intergenic |
| AAACATGGGCAAAGATGTTG+AGG | 0.571019 | 2_4:-59118468 | Msa0338700:exon |
| GTTTCTGATGGTTACAGCAA+AGG | 0.571603 | 2_4:-59117265 | Msa0338700:CDS |
| ACAGCAAATCCAATGGGAAG+TGG | 0.575656 | 2_4:+59117018 | None:intergenic |
| TACCGGCGGTGCAGTAAACA+AGG | 0.576199 | 2_4:+59118180 | None:intergenic |
| TGTTCTTCTTGTGTTTGAGG+TGG | 0.581681 | 2_4:+59118493 | None:intergenic |
| TTTGATACTTACAGGAACAT+GGG | 0.583870 | 2_4:+59117153 | None:intergenic |
| TAAAGAAGCCAAAATTACAT+GGG | 0.586175 | 2_4:-59116326 | Msa0338700:three_prime_UTR |
| AGTAGCCCAAAGGTCACAGC+CGG | 0.588618 | 2_4:+59117424 | None:intergenic |
| AACTCATCTGTATCAAACAA+AGG | 0.595004 | 2_4:+59118389 | None:intergenic |
| CTGGTCCGAAACTCCTGGCA+GGG | 0.595669 | 2_4:+59116947 | None:intergenic |
| TCGTTGTTGAAGATAACGGC+TGG | 0.597000 | 2_4:+59116928 | None:intergenic |
| GATGTTGAGGTTCAAGAACA+AGG | 0.600555 | 2_4:-59118455 | Msa0338700:CDS |
| ACTCCTGGCAGGGTTAATAC+CGG | 0.603336 | 2_4:+59116957 | None:intergenic |
| TAATACCGGTTCCGGTAACG+GGG | 0.609405 | 2_4:+59116971 | None:intergenic |
| AACATGGGATTGAAAACAAG+AGG | 0.610197 | 2_4:+59116384 | None:intergenic |
| TCATACTACAACAGGTACAA+AGG | 0.611316 | 2_4:-59117301 | Msa0338700:CDS |
| CATAGGGCCATTACGAACAT+GGG | 0.613681 | 2_4:+59116369 | None:intergenic |
| CATAGTTGCACAATGTTTAG+GGG | 0.619524 | 2_4:-59117362 | Msa0338700:CDS |
| CATGAACACAGCAAATCCAA+TGG | 0.621267 | 2_4:+59117011 | None:intergenic |
| CTTCAACAACGAGAAAGCCT+GGG | 0.625023 | 2_4:-59116917 | Msa0338700:CDS |
| CTGATCCTAAGAGAAGTGCA+AGG | 0.626815 | 2_4:-59117180 | Msa0338700:CDS |
| AACACTGAATGTGATGGTGT+TGG | 0.639618 | 2_4:-59118245 | Msa0338700:CDS |
| TGATCCTAAGAGAAGTGCAA+GGG | 0.645454 | 2_4:-59117179 | Msa0338700:CDS |
| CAAGAGGACATGACTCCATG+AGG | 0.657538 | 2_4:+59116400 | None:intergenic |
| GCGTCCCACAAGTAGCCCAA+AGG | 0.660824 | 2_4:+59117414 | None:intergenic |
| GTACAAAGGAGGAGTTAACA+TGG | 0.665343 | 2_4:-59117287 | Msa0338700:CDS |
| GTATCAAACAAAGGTGCTGG+TGG | 0.669997 | 2_4:+59118398 | None:intergenic |
| AACAGTGTAGACCAAAACAA+AGG | 0.671173 | 2_4:+59117213 | None:intergenic |
| AAAGAAGCCAAAATTACATG+GGG | 0.678318 | 2_4:-59116325 | Msa0338700:three_prime_UTR |
| TACTACAACAGGTACAAAGG+AGG | 0.683670 | 2_4:-59117298 | Msa0338700:CDS |
| AAGAGGACATGACTCCATGA+GGG | 0.685063 | 2_4:+59116401 | None:intergenic |
| ATACAGATGAGTTAACAAAG+TGG | 0.693100 | 2_4:-59118379 | Msa0338700:CDS |
| GATGGTAACACTGAATGTGA+TGG | 0.695483 | 2_4:-59118251 | Msa0338700:CDS |
| GTGGTGCTGGACTTGCAAAG+GGG | 0.710090 | 2_4:-59117333 | Msa0338700:CDS |
| TAGCTTACCAGAGATACCGG+CGG | 0.818231 | 2_4:+59118166 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAACTACAATTTAAAAT+TGG | - | chr2_4:59117095-59117114 | Msa0338700:intron | 10.0% |
| !!! | TCTAAATTGTATATATTTTT+TGG | + | chr2_4:59117121-59117140 | None:intergenic | 10.0% |
| !! | TGTAATTGAAATTAATTAAT+TGG | - | chr2_4:59117352-59117371 | Msa0338700:CDS | 10.0% |
| !!! | TTTGAAATCATTAATTAAAT+AGG | - | chr2_4:59117783-59117802 | Msa0338700:intron | 10.0% |
| !! | TGAATATTATTAGAATTAGT+TGG | + | chr2_4:59116807-59116826 | None:intergenic | 15.0% |
| !! | TTAAATTAACCAAAAAATCA+AGG | + | chr2_4:59116856-59116875 | None:intergenic | 15.0% |
| !! | TGGTAATATTAAATAATTGT+AGG | - | chr2_4:59117372-59117391 | Msa0338700:CDS | 15.0% |
| !! | TAATATTAAATAATTGTAGG+AGG | - | chr2_4:59117375-59117394 | Msa0338700:CDS | 15.0% |
| !!! | TCAAATTAATCACATTTTTT+TGG | - | chr2_4:59117697-59117716 | Msa0338700:intron | 15.0% |
| !! | ATCATTAATTAAATAGGTAT+TGG | - | chr2_4:59117789-59117808 | Msa0338700:intron | 15.0% |
| !!! | TTTAAATAGAAAATTTTGAG+TGG | + | chr2_4:59118091-59118110 | None:intergenic | 15.0% |
| !! | AACTAAAAATAAAAAAGAGA+AGG | + | chr2_4:59118588-59118607 | None:intergenic | 15.0% |
| !! | TTACAAGTTAGTTATTTAGT+CGG | - | chr2_4:59116728-59116747 | Msa0338700:intron | 20.0% |
| !! | TGTATCATATACACTTTATA+AGG | - | chr2_4:59116755-59116774 | Msa0338700:intron | 20.0% |
| !!! | AATGATTTACCTTGATTTTT+TGG | - | chr2_4:59116844-59116863 | Msa0338700:intron | 20.0% |
| !!! | AATTTTTGTTTACTAACATG+TGG | - | chr2_4:59116955-59116974 | Msa0338700:CDS | 20.0% |
| !!! | AACTTTTAGTACAACTTAAA+AGG | - | chr2_4:59117222-59117241 | Msa0338700:CDS | 20.0% |
| !! | AATTATTATCTATGAGTTGT+TGG | - | chr2_4:59118356-59118375 | Msa0338700:CDS | 20.0% |
| !! | ATGATACTGTTATTCTTAAA+AGG | + | chr2_4:59118390-59118409 | None:intergenic | 20.0% |
| !! | AAAATAAAAAAGAGAAGGAA+GGG | + | chr2_4:59118583-59118602 | None:intergenic | 20.0% |
| !! | AAAAATAAAAAAGAGAAGGA+AGG | + | chr2_4:59118584-59118603 | None:intergenic | 20.0% |
| ! | GAGTAGAAATATGGTATTTA+AGG | + | chr2_4:59116259-59116278 | None:intergenic | 25.0% |
| ! | TTGATGAATGAGTAGAAATA+TGG | + | chr2_4:59116268-59116287 | None:intergenic | 25.0% |
| ! | ACAAGAAGAACAAAAAACAT+GGG | - | chr2_4:59116350-59116369 | Msa0338700:three_prime_UTR | 25.0% |
| ! | TTGTCTACTATAACCAATAA+TGG | + | chr2_4:59116546-59116565 | None:intergenic | 25.0% |
| !! | ATTTCGTTGAATGTTGTTTA+AGG | - | chr2_4:59116702-59116721 | Msa0338700:intron | 25.0% |
| ! | TATGTAAAAACACATAACCA+TGG | + | chr2_4:59117000-59117019 | None:intergenic | 25.0% |
| ! | TTGGTTACATAAGTCAAAAT+TGG | - | chr2_4:59117279-59117298 | Msa0338700:CDS | 25.0% |
| !!! | AATTATTGGTACCTTTGTTT+TGG | - | chr2_4:59117608-59117627 | Msa0338700:intron | 25.0% |
| !! | GTGATTAATTTGATACTTAC+AGG | + | chr2_4:59117690-59117709 | None:intergenic | 25.0% |
| !!! | AAATAGAAAATTTTGAGTGG+TGG | + | chr2_4:59118088-59118107 | None:intergenic | 25.0% |
| !!! | TTTTTGTTCAGTGGATTTAT+TGG | - | chr2_4:59118210-59118229 | Msa0338700:CDS | 25.0% |
| !!! | TTTTGTTCAGTGGATTTATT+GGG | - | chr2_4:59118211-59118230 | Msa0338700:CDS | 25.0% |
| ! | GCTTAATGAATGAATATGTT+TGG | - | chr2_4:59118329-59118348 | Msa0338700:CDS | 25.0% |
| ! | ATAAAGAAGCCAAAATTACA+TGG | - | chr2_4:59118505-59118524 | Msa0338700:five_prime_UTR | 25.0% |
| ! | TAAAGAAGCCAAAATTACAT+GGG | - | chr2_4:59118506-59118525 | Msa0338700:five_prime_UTR | 25.0% |
| !! | ATAAGCATGCTTATGTTTTA+AGG | - | chr2_4:59118545-59118564 | Msa0338700:five_prime_UTR | 25.0% |
| !!! | TAAGCATGCTTATGTTTTAA+GGG | - | chr2_4:59118546-59118565 | Msa0338700:five_prime_UTR | 25.0% |
| TCATCAATCCACACAAAAAT+AGG | - | chr2_4:59116281-59116300 | Msa0338700:three_prime_UTR | 30.0% | |
| ! | TTTTGTTCTTCTTGTGTTTG+AGG | + | chr2_4:59116345-59116364 | None:intergenic | 30.0% |
| CACAAGAAGAACAAAAAACA+TGG | - | chr2_4:59116349-59116368 | Msa0338700:three_prime_UTR | 30.0% | |
| AACTCATCTGTATCAAACAA+AGG | + | chr2_4:59116446-59116465 | None:intergenic | 30.0% | |
| ATACAGATGAGTTAACAAAG+TGG | - | chr2_4:59116453-59116472 | Msa0338700:three_prime_UTR | 30.0% | |
| !!! | ATCACTGTTTTGACCATTAT+TGG | - | chr2_4:59116530-59116549 | Msa0338700:CDS | 30.0% |
| ! | GAATATCGTTTAGCTTAGTT+AGG | + | chr2_4:59116785-59116804 | None:intergenic | 30.0% |
| !!! | TTTTAAGTTTCCCTTTTCCA+TGG | - | chr2_4:59116980-59116999 | Msa0338700:CDS | 30.0% |
| AAACACATAACCATGGAAAA+GGG | + | chr2_4:59116993-59117012 | None:intergenic | 30.0% | |
| AAAACACATAACCATGGAAA+AGG | + | chr2_4:59116994-59117013 | None:intergenic | 30.0% | |
| AAAAGCAAACAAACAATCTC+TGG | + | chr2_4:59117195-59117214 | None:intergenic | 30.0% | |
| AAATGTGCAATTGCAAACAT+TGG | - | chr2_4:59117260-59117279 | Msa0338700:CDS | 30.0% | |
| AACATTGTGCAACTATGTAT+AGG | + | chr2_4:59117467-59117486 | None:intergenic | 30.0% | |
| TACATAGTTGCACAATGTTT+AGG | - | chr2_4:59117468-59117487 | Msa0338700:intron | 30.0% | |
| ACATAGTTGCACAATGTTTA+GGG | - | chr2_4:59117469-59117488 | Msa0338700:intron | 30.0% | |
| TTTGATACTTACAGGAACAT+GGG | + | chr2_4:59117682-59117701 | None:intergenic | 30.0% | |
| ATTTGATACTTACAGGAACA+TGG | + | chr2_4:59117683-59117702 | None:intergenic | 30.0% | |
| TTTCTCGTTGTTGAAGATAA+CGG | + | chr2_4:59117911-59117930 | None:intergenic | 30.0% | |
| CTCGATATTGTAGAGAATTA+CGG | - | chr2_4:59117970-59117989 | Msa0338700:intron | 30.0% | |
| GGTGGTATTTAGTATATATG+TGG | + | chr2_4:59118070-59118089 | None:intergenic | 30.0% | |
| !!! | TGTTTGTTGTTTTTGTTCAG+TGG | - | chr2_4:59118201-59118220 | Msa0338700:CDS | 30.0% |
| ATCCAAATTCCAAACACATA+GGG | + | chr2_4:59118482-59118501 | None:intergenic | 30.0% | |
| AATCCAAATTCCAAACACAT+AGG | + | chr2_4:59118483-59118502 | None:intergenic | 30.0% | |
| ! | TATGTGTTTGGAATTTGGAT+TGG | - | chr2_4:59118482-59118501 | Msa0338700:exon | 30.0% |
| AAAGAAGCCAAAATTACATG+GGG | - | chr2_4:59118507-59118526 | Msa0338700:five_prime_UTR | 30.0% | |
| ! | CATGCTTATCTACAATTTTG+AGG | + | chr2_4:59118534-59118553 | None:intergenic | 30.0% |
| !!! | TGAAGTGTCCTATTTTTGTG+TGG | + | chr2_4:59116292-59116311 | None:intergenic | 35.0% |
| TGGTCAAAACAGTGATGTAA+AGG | + | chr2_4:59116526-59116545 | None:intergenic | 35.0% | |
| CAAAGTGATACCACTATTGA+TGG | - | chr2_4:59116563-59116582 | Msa0338700:CDS | 35.0% | |
| TTCAGTGTTACCATCAATAG+TGG | + | chr2_4:59116576-59116595 | None:intergenic | 35.0% | |
| TCAACGAAATCAAGAGAGAA+CGG | + | chr2_4:59116692-59116711 | None:intergenic | 35.0% | |
| TCATTGAACGTCAGTGTAAT+CGG | - | chr2_4:59117163-59117182 | Msa0338700:intron | 35.0% | |
| ! | ACGCAAGGTGTCTTTAATAA+GGG | - | chr2_4:59117437-59117456 | Msa0338700:CDS | 35.0% |
| CATAGTTGCACAATGTTTAG+GGG | - | chr2_4:59117470-59117489 | Msa0338700:intron | 35.0% | |
| TCCAAACATCATACTACAAC+AGG | - | chr2_4:59117523-59117542 | Msa0338700:intron | 35.0% | |
| ACCTGTTGTAGTATGATGTT+TGG | + | chr2_4:59117527-59117546 | None:intergenic | 35.0% | |
| TCATACTACAACAGGTACAA+AGG | - | chr2_4:59117531-59117550 | Msa0338700:intron | 35.0% | |
| !! | GCTTTAGGTGCTGAAATTAT+TGG | - | chr2_4:59117594-59117613 | Msa0338700:intron | 35.0% |
| AACAGTGTAGACCAAAACAA+AGG | + | chr2_4:59117622-59117641 | None:intergenic | 35.0% | |
| ATGAACACAGCAAATCCAAT+GGG | + | chr2_4:59117823-59117842 | None:intergenic | 35.0% | |
| !! | TATTGGGTTGGACCATTTAT+TGG | - | chr2_4:59118227-59118246 | Msa0338700:CDS | 35.0% |
| CTTTAATTGCTGATCCTCTA+AGG | + | chr2_4:59118286-59118305 | None:intergenic | 35.0% | |
| TATCTATGAGTTGTTGGTGT+TGG | - | chr2_4:59118362-59118381 | Msa0338700:CDS | 35.0% | |
| CATATTGAGTAGTTGTCTAC+TGG | - | chr2_4:59118407-59118426 | Msa0338700:CDS | 35.0% | |
| AACATGGGATTGAAAACAAG+AGG | + | chr2_4:59118451-59118470 | None:intergenic | 35.0% | |
| TTTCAATCCCATGTTCGTAA+TGG | - | chr2_4:59118456-59118475 | Msa0338700:CDS | 35.0% | |
| TGTTCTTCTTGTGTTTGAGG+TGG | + | chr2_4:59116342-59116361 | None:intergenic | 40.0% | |
| AAACATGGGCAAAGATGTTG+AGG | - | chr2_4:59116364-59116383 | Msa0338700:three_prime_UTR | 40.0% | |
| GATGTTGAGGTTCAAGAACA+AGG | - | chr2_4:59116377-59116396 | Msa0338700:three_prime_UTR | 40.0% | |
| !! | AGGTGCTGAATTTACAGCTA+AGG | - | chr2_4:59116397-59116416 | Msa0338700:three_prime_UTR | 40.0% |
| ! | TCTGTATCAAACAAAGGTGC+TGG | + | chr2_4:59116440-59116459 | None:intergenic | 40.0% |
| GATGGTAACACTGAATGTGA+TGG | - | chr2_4:59116581-59116600 | Msa0338700:CDS | 40.0% | |
| ! | AACACTGAATGTGATGGTGT+TGG | - | chr2_4:59116587-59116606 | Msa0338700:CDS | 40.0% |
| !!! | ATGTGATGGTGTTGGTGTTT+TGG | - | chr2_4:59116595-59116614 | Msa0338700:CDS | 40.0% |
| !!! | TGTGATGGTGTTGGTGTTTT+GGG | - | chr2_4:59116596-59116615 | Msa0338700:CDS | 40.0% |
| !!! | TTGGTGTTTTGGGAATTGCT+TGG | - | chr2_4:59116606-59116625 | Msa0338700:CDS | 40.0% |
| !!! | TGGTGTTTTGGGAATTGCTT+GGG | - | chr2_4:59116607-59116626 | Msa0338700:CDS | 40.0% |
| TGTAGGAGGACACATTAATC+CGG | - | chr2_4:59117389-59117408 | Msa0338700:CDS | 40.0% | |
| ! | GACGCAAGGTGTCTTTAATA+AGG | - | chr2_4:59117436-59117455 | Msa0338700:CDS | 40.0% |
| CAATGTTTAGGGGCAATTTG+TGG | - | chr2_4:59117480-59117499 | Msa0338700:intron | 40.0% | |
| TACTACAACAGGTACAAAGG+AGG | - | chr2_4:59117534-59117553 | Msa0338700:intron | 40.0% | |
| GTACAAAGGAGGAGTTAACA+TGG | - | chr2_4:59117545-59117564 | Msa0338700:intron | 40.0% | |
| GGAGTTAACATGGTTTCTGA+TGG | - | chr2_4:59117555-59117574 | Msa0338700:intron | 40.0% | |
| GTTTCTGATGGTTACAGCAA+AGG | - | chr2_4:59117567-59117586 | Msa0338700:intron | 40.0% | |
| ! | TGATCCTAAGAGAAGTGCAA+GGG | - | chr2_4:59117653-59117672 | Msa0338700:intron | 40.0% |
| CATGAACACAGCAAATCCAA+TGG | + | chr2_4:59117824-59117843 | None:intergenic | 40.0% | |
| !! | CATTGGATTTGCTGTGTTCA+TGG | - | chr2_4:59117822-59117841 | Msa0338700:intron | 40.0% |
| ! | GTTCAGTGGATTTATTGGGT+TGG | - | chr2_4:59118215-59118234 | Msa0338700:CDS | 40.0% |
| TACCACCAATACATCCTTAG+AGG | - | chr2_4:59118269-59118288 | Msa0338700:CDS | 40.0% | |
| ! | ATCCTCTAAGGATGTATTGG+TGG | + | chr2_4:59118274-59118293 | None:intergenic | 40.0% |
| ! | CTGATCCTCTAAGGATGTAT+TGG | + | chr2_4:59118277-59118296 | None:intergenic | 40.0% |
| GGATCAGCAATTAAAGCTCT+TGG | - | chr2_4:59118290-59118309 | Msa0338700:CDS | 40.0% | |
| TTAAAGCTCTTGGATCCTTC+AGG | - | chr2_4:59118300-59118319 | Msa0338700:CDS | 40.0% | |
| ! | TCATTAAGCATTGCTCCTGA+AGG | + | chr2_4:59118318-59118337 | None:intergenic | 40.0% |
| ! | TTGAGGACCCCATGTAATTT+TGG | + | chr2_4:59118517-59118536 | None:intergenic | 40.0% |
| !! | GTATCAAACAAAGGTGCTGG+TGG | + | chr2_4:59116437-59116456 | None:intergenic | 45.0% |
| ! | TTGGGAATTGCTTGGGCTTT+TGG | - | chr2_4:59116614-59116633 | Msa0338700:CDS | 45.0% |
| ATTAATCCGGCTGTGACCTT+TGG | - | chr2_4:59117402-59117421 | Msa0338700:CDS | 45.0% | |
| TTAATCCGGCTGTGACCTTT+GGG | - | chr2_4:59117403-59117422 | Msa0338700:CDS | 45.0% | |
| !! | TACAGCAAAGGCACTGCTTT+AGG | - | chr2_4:59117579-59117598 | Msa0338700:intron | 45.0% |
| ! | CTGATCCTAAGAGAAGTGCA+AGG | - | chr2_4:59117652-59117671 | Msa0338700:intron | 45.0% |
| GAATCCCTTGCACTTCTCTT+AGG | + | chr2_4:59117660-59117679 | None:intergenic | 45.0% | |
| ACAGCAAATCCAATGGGAAG+TGG | + | chr2_4:59117817-59117836 | None:intergenic | 45.0% | |
| TGCTGTGTTCATGGTTCACT+TGG | - | chr2_4:59117831-59117850 | Msa0338700:intron | 45.0% | |
| !! | TTAATACCGGTTCCGGTAAC+GGG | + | chr2_4:59117865-59117884 | None:intergenic | 45.0% |
| !! | GTTAATACCGGTTCCGGTAA+CGG | + | chr2_4:59117866-59117885 | None:intergenic | 45.0% |
| ATTAACCCTGCCAGGAGTTT+CGG | - | chr2_4:59117880-59117899 | Msa0338700:intron | 45.0% | |
| ! | TCGTTGTTGAAGATAACGGC+TGG | + | chr2_4:59117907-59117926 | None:intergenic | 45.0% |
| TCTTCAACAACGAGAAAGCC+TGG | - | chr2_4:59117914-59117933 | Msa0338700:intron | 45.0% | |
| CTTCAACAACGAGAAAGCCT+GGG | - | chr2_4:59117915-59117934 | Msa0338700:intron | 45.0% | |
| TGAATTTACCTGGTCATCCC+AGG | + | chr2_4:59117935-59117954 | None:intergenic | 45.0% | |
| GACCAGGTAAATTCAGTGTC+AGG | - | chr2_4:59117940-59117959 | Msa0338700:intron | 45.0% | |
| TGCCTGACACTGAATTTACC+TGG | + | chr2_4:59117945-59117964 | None:intergenic | 45.0% | |
| ! | CAGTTGATGCGATCACATTG+TGG | - | chr2_4:59118000-59118019 | Msa0338700:intron | 45.0% |
| !! | ACCATTTATTGGTGCTGCTG+TGG | - | chr2_4:59118238-59118257 | Msa0338700:CDS | 45.0% |
| AAGAGGACATGACTCCATGA+GGG | + | chr2_4:59118434-59118453 | None:intergenic | 45.0% | |
| CATAGGGCCATTACGAACAT+GGG | + | chr2_4:59118466-59118485 | None:intergenic | 45.0% | |
| ACATAGGGCCATTACGAACA+TGG | + | chr2_4:59118467-59118486 | None:intergenic | 45.0% | |
| TCGTAATGGCCCTATGTGTT+TGG | - | chr2_4:59118470-59118489 | Msa0338700:exon | 45.0% | |
| ! | GGCCCTATGTGTTTGGAATT+TGG | - | chr2_4:59118477-59118496 | Msa0338700:exon | 45.0% |
| !!! | AATTTAAAAATTAATTTGAT+TGG | - | chr2_4:59116222-59116241 | Msa0338700:three_prime_UTR | 5.0% |
| !! | TCAAACAAAGGTGCTGGTGG+TGG | + | chr2_4:59116434-59116453 | None:intergenic | 50.0% |
| ! | GGAATTGCTTGGGCTTTTGG+TGG | - | chr2_4:59116617-59116636 | Msa0338700:intron | 50.0% |
| ! | ATCCTTGTTTACTGCACCGC+CGG | - | chr2_4:59116650-59116669 | Msa0338700:intron | 50.0% |
| TAGCTTACCAGAGATACCGG+CGG | + | chr2_4:59116669-59116688 | None:intergenic | 50.0% | |
| CGGTAGCTTACCAGAGATAC+CGG | + | chr2_4:59116672-59116691 | None:intergenic | 50.0% | |
| TGTGACCTTTGGGCTACTTG+TGG | - | chr2_4:59117413-59117432 | Msa0338700:CDS | 50.0% | |
| GTGACCTTTGGGCTACTTGT+GGG | - | chr2_4:59117414-59117433 | Msa0338700:CDS | 50.0% | |
| TTAGGGGCAATTTGTGGTGC+TGG | - | chr2_4:59117486-59117505 | Msa0338700:intron | 50.0% | |
| ! | TTGTGGTGCTGGACTTGCAA+AGG | - | chr2_4:59117497-59117516 | Msa0338700:intron | 50.0% |
| ! | TGTGGTGCTGGACTTGCAAA+GGG | - | chr2_4:59117498-59117517 | Msa0338700:intron | 50.0% |
| ! | GTATTGGCACCACTTCCCAT+TGG | - | chr2_4:59117805-59117824 | Msa0338700:intron | 50.0% |
| !! | TAATACCGGTTCCGGTAACG+GGG | + | chr2_4:59117864-59117883 | None:intergenic | 50.0% |
| ACTCCTGGCAGGGTTAATAC+CGG | + | chr2_4:59117878-59117897 | None:intergenic | 50.0% | |
| GCCACAGCAGCACCAATAAA+TGG | + | chr2_4:59118242-59118261 | None:intergenic | 50.0% | |
| AGTTGTCTACTGGTCCCTCA+TGG | - | chr2_4:59118417-59118436 | Msa0338700:CDS | 50.0% | |
| CAAGAGGACATGACTCCATG+AGG | + | chr2_4:59118435-59118454 | None:intergenic | 50.0% | |
| !! | AAGGTGCTGGTGGTGGATCT+TGG | + | chr2_4:59116427-59116446 | None:intergenic | 55.0% |
| TACCGGCGGTGCAGTAAACA+AGG | + | chr2_4:59116655-59116674 | None:intergenic | 55.0% | |
| AGTAGCCCAAAGGTCACAGC+CGG | + | chr2_4:59117411-59117430 | None:intergenic | 55.0% | |
| ! | GTGGTGCTGGACTTGCAAAG+GGG | - | chr2_4:59117499-59117518 | Msa0338700:intron | 55.0% |
| TTGGCTACCATCCCCGTTAC+CGG | - | chr2_4:59117850-59117869 | Msa0338700:intron | 55.0% | |
| !! | GGCAGGGTTAATACCGGTTC+CGG | + | chr2_4:59117872-59117891 | None:intergenic | 55.0% |
| GAACCGGTATTAACCCTGCC+AGG | - | chr2_4:59117872-59117891 | Msa0338700:intron | 55.0% | |
| TACTGCACCGCCGGTATCTC+TGG | - | chr2_4:59116659-59116678 | Msa0338700:intron | 60.0% | |
| GCGTCCCACAAGTAGCCCAA+AGG | + | chr2_4:59117421-59117440 | None:intergenic | 60.0% | |
| TGGGCTACTTGTGGGACGCA+AGG | - | chr2_4:59117422-59117441 | Msa0338700:CDS | 60.0% | |
| ACCATCCCCGTTACCGGAAC+CGG | - | chr2_4:59117856-59117875 | Msa0338700:intron | 60.0% | |
| CTGGTCCGAAACTCCTGGCA+GGG | + | chr2_4:59117888-59117907 | None:intergenic | 60.0% | |
| ! | AACGGCTGGTCCGAAACTCC+TGG | + | chr2_4:59117893-59117912 | None:intergenic | 60.0% |
| CGAGAAAGCCTGGGATGACC+AGG | - | chr2_4:59117924-59117943 | Msa0338700:intron | 60.0% | |
| !! | ACCGGTTCCGGTAACGGGGA+TGG | + | chr2_4:59117860-59117879 | None:intergenic | 65.0% |
| GCTGGTCCGAAACTCCTGGC+AGG | + | chr2_4:59117889-59117908 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 59116143 | 59118711 | 59116143 | ID=Msa0338700;Name=Msa0338700 |
| chr2_4 | mRNA | 59116143 | 59118711 | 59116143 | ID=Msa0338700-mRNA-1;Parent=Msa0338700;Name=Msa0338700-mRNA-1;_AED=0.03;_eAED=0.03;_QI=225|1|1|1|1|1|4|377|287 |
| chr2_4 | exon | 59116143 | 59116633 | 59116143 | ID=Msa0338700-mRNA-1:exon:18356;Parent=Msa0338700-mRNA-1 |
| chr2_4 | exon | 59116909 | 59117049 | 59116909 | ID=Msa0338700-mRNA-1:exon:18355;Parent=Msa0338700-mRNA-1 |
| chr2_4 | exon | 59117165 | 59117460 | 59117165 | ID=Msa0338700-mRNA-1:exon:18354;Parent=Msa0338700-mRNA-1 |
| chr2_4 | exon | 59118174 | 59118711 | 59118174 | ID=Msa0338700-mRNA-1:exon:18353;Parent=Msa0338700-mRNA-1 |
| chr2_4 | five_prime_UTR | 59118487 | 59118711 | 59118487 | ID=Msa0338700-mRNA-1:five_prime_utr;Parent=Msa0338700-mRNA-1 |
| chr2_4 | CDS | 59118174 | 59118486 | 59118174 | ID=Msa0338700-mRNA-1:cds;Parent=Msa0338700-mRNA-1 |
| chr2_4 | CDS | 59117165 | 59117460 | 59117165 | ID=Msa0338700-mRNA-1:cds;Parent=Msa0338700-mRNA-1 |
| chr2_4 | CDS | 59116909 | 59117049 | 59116909 | ID=Msa0338700-mRNA-1:cds;Parent=Msa0338700-mRNA-1 |
| chr2_4 | CDS | 59116520 | 59116633 | 59116520 | ID=Msa0338700-mRNA-1:cds;Parent=Msa0338700-mRNA-1 |
| chr2_4 | three_prime_UTR | 59116143 | 59116519 | 59116143 | ID=Msa0338700-mRNA-1:three_prime_utr;Parent=Msa0338700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
