AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0091250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091250 MtrunA17_Chr1g0211291 100.000 489 0 0 1 489 1 489 0.0 1002
Msa0091250 MtrunA17_Chr7g0250051 98.364 489 6 2 1 489 1 487 0.0 978
Msa0091250 MtrunA17_Chr1g0208751 28.846 364 228 8 89 444 153 493 8.70e-29 119
Msa0091250 MtrunA17_Chr4g0015651 30.363 303 191 5 84 384 87 371 1.18e-28 119
Msa0091250 MtrunA17_Chr4g0016741 30.363 303 191 5 84 384 87 371 1.18e-28 119
Msa0091250 MtrunA17_CPg0492941 30.363 303 191 5 84 384 87 371 1.18e-28 119
Msa0091250 MtrunA17_Chr1g0208761 28.642 405 251 12 52 444 118 496 1.21e-27 116
Msa0091250 MtrunA17_Chr3g0090971 27.198 364 233 7 89 444 94 433 2.03e-25 108
Msa0091250 MtrunA17_Chr4g0016371 27.397 365 231 7 89 444 55 394 2.14e-25 108
Msa0091250 MtrunA17_CPg0493401 27.397 365 231 7 89 444 94 433 2.98e-25 108
Msa0091250 MtrunA17_Chr7g0229391 27.123 365 232 8 89 444 94 433 2.04e-24 105
Msa0091250 MtrunA17_MTg0490471 26.586 331 229 5 57 384 62 381 5.10e-24 105
Msa0091250 MtrunA17_Chr4g0000341 28.936 235 158 4 226 453 303 535 2.92e-21 97.1
Msa0091250 MtrunA17_Chr2g0278821 27.000 200 118 4 244 441 11 184 1.69e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091250 AT4G38510.5 96.933 489 13 2 1 489 8 494 0.0 963
Msa0091250 AT4G38510.1 96.933 489 13 2 1 489 1 487 0.0 962
Msa0091250 AT4G38510.3 96.933 489 13 2 1 489 1 487 0.0 962
Msa0091250 AT4G38510.4 96.933 489 13 2 1 489 1 487 0.0 962
Msa0091250 AT4G38510.2 96.933 489 13 2 1 489 1 487 0.0 962
Msa0091250 AT1G20260.1 95.464 485 22 0 3 487 1 485 0.0 953
Msa0091250 AT1G76030.1 96.888 482 14 1 6 487 4 484 0.0 951
Msa0091250 ATCG00120.1 27.809 356 212 6 84 437 87 399 1.16e-28 119
Msa0091250 AT5G08690.1 28.967 397 246 11 60 444 121 493 3.52e-28 118
Msa0091250 AT5G08670.1 28.967 397 246 11 60 444 121 493 4.33e-28 117
Msa0091250 AT5G08680.1 28.967 397 246 11 60 444 124 496 5.26e-28 117
Msa0091250 ATMG01190.1 27.492 331 226 5 57 384 62 381 1.69e-26 112
Msa0091250 AT2G07698.1 27.219 338 232 5 57 391 332 658 5.24e-26 112
Msa0091250 ATCG00480.1 28.090 356 238 5 90 444 95 433 7.26e-26 110
Msa0091250 AT1G78900.1 28.936 235 158 4 226 453 302 534 2.86e-21 97.8
Msa0091250 AT1G78900.2 28.936 235 158 4 226 453 302 534 2.86e-21 97.8

Find 183 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGACAATCTCTTGATATT+TGG 0.086118 1_2:-73396850 None:intergenic
GCATGGTTAGAATTGGAATT+TGG 0.112862 1_2:-73400813 None:intergenic
ACAGTTGTATCTGGAATTTC+TGG 0.143455 1_2:+73401941 Msa0091250:intron
CTCCGAATTGTTAATTAGTT+TGG 0.238354 1_2:+73402620 Msa0091250:three_prime_UTR
ATCTTGTAATTTCATTATTT+AGG 0.241526 1_2:+73402455 Msa0091250:three_prime_UTR
TATTTAGGATATTTGTAATA+AGG 0.248801 1_2:+73402470 Msa0091250:three_prime_UTR
TTGACAATCTCTTGATATTT+GGG 0.268902 1_2:-73396849 None:intergenic
TTTACGACCGTACAGTTTAC+TGG 0.269439 1_2:+73397253 Msa0091250:CDS
GGTCGGATATTTAACGGTTC+TGG 0.297261 1_2:+73398138 Msa0091250:CDS
CATGGTTAGAATTGGAATTT+GGG 0.316289 1_2:-73400812 None:intergenic
CCAGGATAACCACGTCTTCC+TGG 0.316708 1_2:-73400718 None:intergenic
ATATTATTAACAGTTGTATC+TGG 0.321630 1_2:+73401932 Msa0091250:intron
TCACCACTGCAGAGTGCTAT+TGG 0.329482 1_2:+73401579 Msa0091250:intron
TACTTGTGTTGCACACAGTT+TGG 0.330060 1_2:+73402371 Msa0091250:three_prime_UTR
TCTTACTACTGCTGAATATC+TGG 0.332465 1_2:+73400374 Msa0091250:CDS
ATTCTCTCTGTATGGTGCTT+TGG 0.332926 1_2:+73402651 Msa0091250:three_prime_UTR
TCATTTGGCATGGTTAGAAT+TGG 0.334129 1_2:-73400820 None:intergenic
TGCGGGTGTCGTAGGCTCCC+TGG 0.338118 1_2:-73401989 None:intergenic
CACCACTGCAGAGTGCTATT+GGG 0.340834 1_2:+73401580 Msa0091250:intron
ATTATTTCTTTACCATCATT+TGG 0.341729 1_2:-73400835 None:intergenic
CAGGTATTTGAAGGTACATC+TGG 0.345618 1_2:+73397217 Msa0091250:intron
GAGATTGTCAATATTCGTTT+AGG 0.348480 1_2:+73396861 Msa0091250:CDS
CTGTGCAGCAATTTCATTAT+GGG 0.352240 1_2:-73398436 None:intergenic
TCTGTGCAGCAATTTCATTA+TGG 0.352813 1_2:-73398437 None:intergenic
CAGCATCTCGGCTGTAAAAC+TGG 0.358949 1_2:-73402100 None:intergenic
GTCCGTCATAAATATAATAA+AGG 0.361171 1_2:+73402238 Msa0091250:three_prime_UTR
GCACCATACAGAGAGAATTA+TGG 0.370583 1_2:-73402646 None:intergenic
GAATCTGGCAAAAGTGGCTT+TGG 0.372685 1_2:+73402582 Msa0091250:three_prime_UTR
GGAACGTGGGTGAGACTCAC+TGG 0.376659 1_2:-73395405 None:intergenic
AAGTAAGCCTCAGGTAAAAT+TGG 0.379673 1_2:-73398183 None:intergenic
CTAATTAACAATTCGGAGCT+TGG 0.392355 1_2:-73402615 None:intergenic
TTTGGGATGGTTGGAATTTG+TGG 0.399858 1_2:+73402389 Msa0091250:three_prime_UTR
GAGGCTTACTTGGATATATC+AGG 0.401427 1_2:+73398195 Msa0091250:CDS
GTGATAATACGTTCAATTGT+AGG 0.404208 1_2:-73400339 None:intergenic
CATCCAACTCCTGATCTTAC+CGG 0.404800 1_2:+73400947 Msa0091250:CDS
AGGACTGTGTCTGGAGTTGC+CGG 0.405257 1_2:+73396694 Msa0091250:CDS
GGTTCTCTCACTAGGGTTGA+TGG 0.409584 1_2:-73398313 None:intergenic
AGATTACCAAATTAAGGAAA+AGG 0.411767 1_2:-73399732 None:intergenic
TGGCGAAAAGGCTGTTGTTC+AGG 0.415818 1_2:+73396923 Msa0091250:CDS
ACTTGTGTTGCACACAGTTT+GGG 0.417897 1_2:+73402372 Msa0091250:three_prime_UTR
CCAAGCATGTCCAGTGATAC+AGG 0.419348 1_2:-73398117 None:intergenic
AATCAATTGCCCATGACATT+AGG 0.421049 1_2:-73402178 None:intergenic
TTTACGCCCCTCAATTCTTC+CGG 0.423822 1_2:-73400779 None:intergenic
TCTTCCTGGCACCTCTTCTC+TGG 0.425819 1_2:-73400704 None:intergenic
TACCAAACTAATTAACAATT+CGG 0.429020 1_2:-73402622 None:intergenic
CAACAACAGCTTTCATTGCC+TGG 0.434544 1_2:-73401795 None:intergenic
TCGGGATAGGTTCTCTCACT+AGG 0.437152 1_2:-73398321 None:intergenic
TGAGAGGAAGTTTGTTGCCC+AGG 0.437811 1_2:+73401971 Msa0091250:CDS
ATGCTTGGTCGGATATTTAA+CGG 0.442245 1_2:+73398132 Msa0091250:CDS
ACAGAATACAGGACTGTGTC+TGG 0.446233 1_2:+73396685 Msa0091250:intron
GATTACCAAATTAAGGAAAA+GGG 0.449091 1_2:-73399731 None:intergenic
TGATCTTACCGGATATATTA+CGG 0.452298 1_2:+73400958 Msa0091250:CDS
TAGAGACTGGAATATATTGC+GGG 0.454648 1_2:-73402006 None:intergenic
ATTGGCGGACCATTGTCAAT+TGG 0.464082 1_2:-73398165 None:intergenic
CCAGGAAGACGTGGTTATCC+TGG 0.466984 1_2:+73400718 Msa0091250:CDS
TATCCATAATTCTCTCTGTA+TGG 0.467790 1_2:+73402643 Msa0091250:three_prime_UTR
CTGCCCCTCCGTAATATATC+CGG 0.472296 1_2:-73400966 None:intergenic
GGACAAGTTCTCGAGGTTGA+TGG 0.472504 1_2:+73396903 Msa0091250:CDS
TTATTAATGTCACAGAATAC+AGG 0.473189 1_2:+73396674 Msa0091250:intron
GTCAATATTCGTTTAGGCGA+TGG 0.473500 1_2:+73396867 Msa0091250:CDS
AGACCGGCAGCTGAAAATAG+AGG 0.475986 1_2:-73398411 None:intergenic
TGAACGTGCCGGAAGAATTG+AGG 0.476839 1_2:+73400771 Msa0091250:CDS
GCGGGTGTCGTAGGCTCCCT+GGG 0.477631 1_2:-73401988 None:intergenic
ACTATTGATCAGGTATTTGA+AGG 0.479209 1_2:+73397208 Msa0091250:intron
GATTGTTTGAAGTTCTAAGA+TGG 0.489532 1_2:+73396378 Msa0091250:intron
TTGTGATCAGAGAGGGAGAT+GGG 0.490683 1_2:-73395426 None:intergenic
TCCAGTCTGTATCATCTCCT+CGG 0.491457 1_2:-73398340 None:intergenic
GTAATATATCCGGTAAGATC+AGG 0.495201 1_2:-73400956 None:intergenic
TGCACACAGTTTGGGATGGT+TGG 0.495421 1_2:+73402380 Msa0091250:three_prime_UTR
CTCAAGAATGACCAATGGTC+CGG 0.496147 1_2:-73396713 None:intergenic
CTTTGAGGAGAACGGCTCAA+TGG 0.497375 1_2:+73399699 Msa0091250:CDS
ATTGTTTGAAGTTCTAAGAT+GGG 0.497535 1_2:+73396379 Msa0091250:intron
GCACAGATTTGTCGTCAAGC+TGG 0.499909 1_2:+73398453 Msa0091250:CDS
CTCGAGAACTTGTCCACGCC+GGG 0.500617 1_2:-73396895 None:intergenic
GACGACGGCACCTTGGAGAT+AGG 0.501299 1_2:+73396427 Msa0091250:CDS
CCAGTCTGTATCATCTCCTC+GGG 0.502795 1_2:-73398339 None:intergenic
GCTGCCAGAGAAGAGGTGCC+AGG 0.506143 1_2:+73400700 Msa0091250:CDS
AACCTTTATTATATTTATGA+CGG 0.506323 1_2:-73402240 None:intergenic
GAACGTGCCGGAAGAATTGA+GGG 0.506526 1_2:+73400772 Msa0091250:CDS
TTCTTTACCATCATTTGGCA+TGG 0.507173 1_2:-73400830 None:intergenic
TGAAACAAGCAAACATACAC+TGG 0.507667 1_2:-73402421 None:intergenic
AGCCTGTTCAGTTAGTCAAA+AGG 0.509483 1_2:+73402290 Msa0091250:three_prime_UTR
GAATATATTGCGGGTGTCGT+AGG 0.509788 1_2:-73401997 None:intergenic
ATGTTCTTCCATCACTATCT+CGG 0.513623 1_2:+73401447 Msa0091250:CDS
CTGTATGCAAATTATGCCAT+TGG 0.516378 1_2:+73401763 Msa0091250:CDS
TCAATCAGCGCCTAATGTCA+TGG 0.516471 1_2:+73402168 Msa0091250:three_prime_UTR
CTGTATCATCTCCTCGGGAT+AGG 0.517113 1_2:-73398334 None:intergenic
TGCAGCTATGGGAGTTAACA+TGG 0.517732 1_2:+73399651 Msa0091250:CDS
CGACAATGACGACGGCACCT+TGG 0.517816 1_2:+73396420 Msa0091250:CDS
TGCCATTGGAAAGGATGTCC+AGG 0.518353 1_2:+73401777 Msa0091250:CDS
ATCACTATCTCGGTTGATGA+AGG 0.519694 1_2:+73401457 Msa0091250:CDS
ACATTAGGCGCTGATTGAGC+AGG 0.520877 1_2:-73402163 None:intergenic
ATTCTAACCATGCCAAATGA+TGG 0.521293 1_2:+73400823 Msa0091250:CDS
TCTGGGGAATCTGGCAAAAG+TGG 0.522767 1_2:+73402576 Msa0091250:three_prime_UTR
GTCTGGAGTTGCCGGACCAT+TGG 0.523391 1_2:+73396702 Msa0091250:CDS
ATCTTGCATGGACCTTACTC+CGG 0.526356 1_2:+73402030 Msa0091250:CDS
TATAGGAATCACAACATCTA+CGG 0.526427 1_2:-73402318 None:intergenic
GTAAAACTGGTCAAGAGTCT+TGG 0.529021 1_2:-73402087 None:intergenic
TGGGGAGGGAATGACTAGAA+AGG 0.531100 1_2:+73401599 Msa0091250:CDS
CAGGCAATGAAAGCTGTTGT+TGG 0.535099 1_2:+73401796 Msa0091250:CDS
ACTGAACAGGCTCGAAAATG+AGG 0.535618 1_2:-73402279 None:intergenic
TAATAAGGATAGTTGTCACT+TGG 0.536391 1_2:+73402485 Msa0091250:three_prime_UTR
GATATATCCAAGTAAGCCTC+AGG 0.536974 1_2:-73398192 None:intergenic
TCTCGAGGTTGATGGCGAAA+AGG 0.540595 1_2:+73396911 Msa0091250:CDS
TCCATGCAAGATCTAGAGAC+TGG 0.542399 1_2:-73402019 None:intergenic
CCTGTATCACTGGACATGCT+TGG 0.543279 1_2:+73398117 Msa0091250:CDS
TAGGCAGTTGCATAATAGAC+AGG 0.544818 1_2:+73401000 Msa0091250:CDS
TCCAGTCTCTAGATCTTGCA+TGG 0.545696 1_2:+73402018 Msa0091250:CDS
GGCACCTTGGAGATAGGAAT+GGG 0.545991 1_2:+73396433 Msa0091250:CDS
CGGCACCTTGGAGATAGGAA+TGG 0.547991 1_2:+73396432 Msa0091250:CDS
GAGAGGAAGTTTGTTGCCCA+GGG 0.548471 1_2:+73401972 Msa0091250:CDS
ATCATCAATTACCAGCATCT+CGG 0.552362 1_2:-73402112 None:intergenic
AGTGATGGAAGAACATTGAT+TGG 0.552550 1_2:-73401440 None:intergenic
CAATCAGCGCCTAATGTCAT+GGG 0.553748 1_2:+73402169 Msa0091250:three_prime_UTR
TTTGTGATCAGAGAGGGAGA+TGG 0.553774 1_2:-73395427 None:intergenic
TCTTGATTTATGCAGGGAGG+AGG 0.554491 1_2:+73399601 Msa0091250:intron
AACTGGTCAAGAGTCTTGGC+TGG 0.554684 1_2:-73402083 None:intergenic
CCCGAGGAGATGATACAGAC+TGG 0.555094 1_2:+73398339 Msa0091250:CDS
GGAAGAATTGAGGGGCGTAA+AGG 0.556865 1_2:+73400781 Msa0091250:CDS
TTGAAGTTCTAAGATGGGTG+TGG 0.557939 1_2:+73396384 Msa0091250:intron
AAGCGTGACTTTGAGGAGAA+CGG 0.558460 1_2:+73399691 Msa0091250:CDS
ACCACTGCAGAGTGCTATTG+GGG 0.563672 1_2:+73401581 Msa0091250:intron
CAGAGAGGGAGATGGGAACG+TGG 0.564661 1_2:-73395419 None:intergenic
CGGGATAGGTTCTCTCACTA+GGG 0.566355 1_2:-73398320 None:intergenic
ATAGGAATCACAACATCTAC+GGG 0.567475 1_2:-73402317 None:intergenic
TATACGATGAAGAAGTTCAC+GGG 0.567632 1_2:-73402060 None:intergenic
GCAACAATTTATGAACGTGC+CGG 0.568995 1_2:+73400760 Msa0091250:CDS
TGCCTGGACATCCTTTCCAA+TGG 0.569487 1_2:-73401779 None:intergenic
CTGCAGAGTGCTATTGGGGA+GGG 0.572458 1_2:+73401585 Msa0091250:intron
TATCACTGGACATGCTTGGT+CGG 0.573162 1_2:+73398121 Msa0091250:CDS
CTAGAGACTGGAATATATTG+CGG 0.576024 1_2:-73402007 None:intergenic
TGTGCAGCAATTTCATTATG+GGG 0.578028 1_2:-73398435 None:intergenic
TCATTCTGATGTGTCCAACC+AGG 0.578586 1_2:+73401623 Msa0091250:CDS
AGCACTTTCATCTGAGGACC+TGG 0.579733 1_2:+73401825 Msa0091250:CDS
TAAGCCTCAGGTAAAATTGG+CGG 0.582523 1_2:-73398180 None:intergenic
ACGAACAGATAAATACATCA+AGG 0.595675 1_2:-73402514 None:intergenic
GGACAGAACAAATGTGGACT+AGG 0.598393 1_2:-73402219 None:intergenic
AGGGGCAGATATACATCGAT+AGG 0.599010 1_2:+73400981 Msa0091250:CDS
ATGGAAGAACATTGATTGGT+GGG 0.602705 1_2:-73401436 None:intergenic
GTGTTGCACACAGTTTGGGA+TGG 0.602819 1_2:+73402376 Msa0091250:three_prime_UTR
AGGTATTTGAAGGTACATCT+GGG 0.603787 1_2:+73397218 Msa0091250:intron
AATTTCTGGACAAGTTTGAG+AGG 0.606081 1_2:+73401955 Msa0091250:CDS
ACTTTCTCAAGAATGACCAA+TGG 0.606143 1_2:-73396718 None:intergenic
GTATACGATGAAGAAGTTCA+CGG 0.610810 1_2:-73402061 None:intergenic
TATCCGGTAAGATCAGGAGT+TGG 0.612787 1_2:-73400950 None:intergenic
TTCATCAACCGAGATAGTGA+TGG 0.612897 1_2:-73401455 None:intergenic
AGAAGAAGCACTTTCATCTG+AGG 0.617772 1_2:+73401819 Msa0091250:CDS
GGTCATTCTTGAGAAAGTGA+AGG 0.620043 1_2:+73396723 Msa0091250:CDS
TTATGCTGATGCTCTTCGTG+AGG 0.621125 1_2:+73400446 Msa0091250:CDS
GTCATGAATTCTATTGCTAG+AGG 0.622259 1_2:+73398378 Msa0091250:CDS
GGTATCTGCTGCCAGAGAAG+AGG 0.624465 1_2:+73400693 Msa0091250:intron
GAAGAGGTGCCAGGAAGACG+TGG 0.628045 1_2:+73400709 Msa0091250:CDS
GACCGTACAGTTTACTGGAG+AGG 0.629013 1_2:+73397258 Msa0091250:CDS
GTGCAGCAATTTCATTATGG+GGG 0.632413 1_2:-73398434 None:intergenic
TACCTCTCCAGTAAACTGTA+CGG 0.633139 1_2:-73397260 None:intergenic
GATGGAAGAACATTGATTGG+TGG 0.633609 1_2:-73401437 None:intergenic
ACTGCAGAGTGCTATTGGGG+AGG 0.635578 1_2:+73401584 Msa0091250:intron
GGCGATGGAACTACCCGGCG+TGG 0.636786 1_2:+73396882 Msa0091250:CDS
CGTACCCATTCCTATCTCCA+AGG 0.637796 1_2:-73396437 None:intergenic
GACCGGCAGCTGAAAATAGA+GGG 0.638267 1_2:-73398410 None:intergenic
CCTCGAGAACTTGTCCACGC+CGG 0.642978 1_2:-73396896 None:intergenic
GAAACAAGCAAACATACACT+GGG 0.645433 1_2:-73402420 None:intergenic
GAATATCTGGCGTATGAATG+TGG 0.645805 1_2:+73400387 Msa0091250:CDS
TGCAAATTATGCCATTGGAA+AGG 0.646117 1_2:+73401768 Msa0091250:CDS
GAAGTCTGATAATCTTCTTG+AGG 0.648163 1_2:+73398494 Msa0091250:CDS
GAACGTGGGTGAGACTCACT+GGG 0.650343 1_2:-73395404 None:intergenic
CTTACCGGATATATTACGGA+GGG 0.654500 1_2:+73400962 Msa0091250:CDS
AGAGAGGGAGATGGGAACGT+GGG 0.657598 1_2:-73395418 None:intergenic
AGATCTGTATACATATAACC+AGG 0.661413 1_2:-73400736 None:intergenic
TATGACGGACAGAACAAATG+TGG 0.665248 1_2:-73402225 None:intergenic
CAAACAAGAAGAGACCTGGT+TGG 0.666933 1_2:-73401637 None:intergenic
CCGGCGTGGACAAGTTCTCG+AGG 0.672366 1_2:+73396896 Msa0091250:CDS
TCTGGAAAACCAATTGACAA+TGG 0.674567 1_2:+73398156 Msa0091250:CDS
GTTTAGGCGATGGAACTACC+CGG 0.676003 1_2:+73396877 Msa0091250:CDS
AATGCTAGCGACAATGACGA+CGG 0.701949 1_2:+73396412 Msa0091250:CDS
TTACCGGATATATTACGGAG+GGG 0.706702 1_2:+73400963 Msa0091250:CDS
TAGTGAGAGAACCTATCCCG+AGG 0.712174 1_2:+73398323 Msa0091250:CDS
ATACGATGAAGAAGTTCACG+GGG 0.717533 1_2:-73402059 None:intergenic
TGACGTACATACCTGTGCTG+TGG 0.719259 1_2:-73395460 None:intergenic
TCTTACCGGATATATTACGG+AGG 0.726344 1_2:+73400961 Msa0091250:CDS
GCAGTAGTAAGAGCAATACG+AGG 0.737884 1_2:-73400363 None:intergenic
AACGTGCCGGAAGAATTGAG+GGG 0.763048 1_2:+73400773 Msa0091250:CDS
TACGATGAAGAAGTTCACGG+GGG 0.801804 1_2:-73402058 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTATATTATTAATTA+AGG + chr1_2:73398896-73398915 Msa0091250:intron 0.0%
!! TAATCTTAATTAAAAATTGA+AGG - chr1_2:73395581-73395600 None:intergenic 10.0%
!!! TAATATATTTCTAATTATTC+AGG + chr1_2:73398285-73398304 Msa0091250:intron 10.0%
!!! TTATAATTTTTTTAATAAGG+GGG - chr1_2:73400232-73400251 None:intergenic 10.0%
!!! TTAGTTTTAAAGTAATACTT+TGG + chr1_2:73396128-73396147 Msa0091250:intron 15.0%
!!! TCTTTTTATTGATTTATCAA+TGG - chr1_2:73396520-73396539 None:intergenic 15.0%
!! AAACTATAAAATGACATTAA+CGG - chr1_2:73397173-73397192 None:intergenic 15.0%
!!! TAAACAGCATATATTTTTAT+GGG - chr1_2:73397368-73397387 None:intergenic 15.0%
!!! ATAAACAGCATATATTTTTA+TGG - chr1_2:73397369-73397388 None:intergenic 15.0%
!! GAAAAGAAATATTATAAGAT+AGG + chr1_2:73398666-73398685 Msa0091250:intron 15.0%
!!! TTTTAAAGATTACCAAATTA+AGG - chr1_2:73399741-73399760 None:intergenic 15.0%
!!! AATTTTCTAAAAACGTTAAA+TGG + chr1_2:73400111-73400130 Msa0091250:intron 15.0%
!! TTATATGTAAACTATCTTAT+TGG + chr1_2:73401682-73401701 Msa0091250:intron 15.0%
!! AAAAAAAAAGACTATCTTAA+TGG + chr1_2:73401719-73401738 Msa0091250:intron 15.0%
!! AACCTTTATTATATTTATGA+CGG - chr1_2:73402243-73402262 None:intergenic 15.0%
!! ATCTTGTAATTTCATTATTT+AGG + chr1_2:73402455-73402474 Msa0091250:three_prime_UTR 15.0%
!!! TATTTAGGATATTTGTAATA+AGG + chr1_2:73402470-73402489 Msa0091250:three_prime_UTR 15.0%
!! ATTAAAAATTGAAGGAAGTA+TGG - chr1_2:73395573-73395592 None:intergenic 20.0%
!!! TTAATGAGTTGAATAGAAAA+TGG + chr1_2:73396004-73396023 Msa0091250:intron 20.0%
!! ACAATTATCCTTATTAACTA+TGG + chr1_2:73396105-73396124 Msa0091250:intron 20.0%
!! AAAACTAACCATAGTTAATA+AGG - chr1_2:73396116-73396135 None:intergenic 20.0%
!! AGAACATTCAATAAGAATAT+CGG - chr1_2:73396772-73396791 None:intergenic 20.0%
!! TCTTAATTAACTCAAAAGAT+AGG - chr1_2:73396990-73397009 None:intergenic 20.0%
!! CTTTATTAAAACTATTGATC+AGG + chr1_2:73397198-73397217 Msa0091250:intron 20.0%
!! TATCTTCTTTATCATTATCT+GGG - chr1_2:73397575-73397594 None:intergenic 20.0%
!! TTATCTTCTTTATCATTATC+TGG - chr1_2:73397576-73397595 None:intergenic 20.0%
!!! TTTAACTTGAAATTTTGTAG+TGG + chr1_2:73397712-73397731 Msa0091250:intron 20.0%
!! TTAAATCTGCTTAGAAAATA+GGG + chr1_2:73397799-73397818 Msa0091250:intron 20.0%
!! AAACTAATAGAATAGTAATC+AGG - chr1_2:73397870-73397889 None:intergenic 20.0%
!! TAAAAGTTCTTCCTTTAAAT+TGG + chr1_2:73397989-73398008 Msa0091250:intron 20.0%
!! AAATATTATAAGATAGGAAC+TGG + chr1_2:73398672-73398691 Msa0091250:intron 20.0%
!! AATATTATAAGATAGGAACT+GGG + chr1_2:73398673-73398692 Msa0091250:intron 20.0%
!!! TCATTTTGACTGTAAAAAAA+AGG + chr1_2:73399064-73399083 Msa0091250:intron 20.0%
!! AATATGTCAATAGGAATAAA+GGG - chr1_2:73399374-73399393 None:intergenic 20.0%
!! TAATATGTCAATAGGAATAA+AGG - chr1_2:73399375-73399394 None:intergenic 20.0%
!! ATAGTGATTAATATGTCAAT+AGG - chr1_2:73399383-73399402 None:intergenic 20.0%
!! TACTCATATTACATAAAGTA+TGG - chr1_2:73399562-73399581 None:intergenic 20.0%
!! TACTTTATGTAATATGAGTA+AGG + chr1_2:73399562-73399581 Msa0091250:intron 20.0%
!!! TTTGATTCTTCATTTTTCTT+TGG + chr1_2:73399917-73399936 Msa0091250:intron 20.0%
!!! TTGATTCTTCATTTTTCTTT+GGG + chr1_2:73399918-73399937 Msa0091250:intron 20.0%
!! ATCAATAGATATATATGTAG+AGG + chr1_2:73400003-73400022 Msa0091250:intron 20.0%
!! TTTAATGTAGAACTAGTATT+TGG + chr1_2:73400039-73400058 Msa0091250:intron 20.0%
!!! GACTTCATTATTTTGTTTAA+TGG + chr1_2:73400160-73400179 Msa0091250:intron 20.0%
!! GGGTAAGAAATAAAAATTAT+CGG - chr1_2:73400266-73400285 None:intergenic 20.0%
!!! TTTTCCTAATAAATTACAGT+TGG - chr1_2:73400479-73400498 None:intergenic 20.0%
!!! ATTATTTCTTTACCATCATT+TGG - chr1_2:73400838-73400857 None:intergenic 20.0%
!! ATATAAAAGCAGTTAATCAT+TGG + chr1_2:73401152-73401171 Msa0091250:intron 20.0%
!! ACATATGTTTCTTAATCAAA+AGG + chr1_2:73401523-73401542 Msa0091250:intron 20.0%
!! TAAAAAAAGAAAACTACACA+GGG - chr1_2:73401665-73401684 None:intergenic 20.0%
!! ATAAAAAAAGAAAACTACAC+AGG - chr1_2:73401666-73401685 None:intergenic 20.0%
!! ATACAACTGTTAATAATATG+GGG - chr1_2:73401931-73401950 None:intergenic 20.0%
!! GATACAACTGTTAATAATAT+GGG - chr1_2:73401932-73401951 None:intergenic 20.0%
!! AGATACAACTGTTAATAATA+TGG - chr1_2:73401933-73401952 None:intergenic 20.0%
!! ATATTATTAACAGTTGTATC+TGG + chr1_2:73401932-73401951 Msa0091250:intron 20.0%
!! TACCAAACTAATTAACAATT+CGG - chr1_2:73402625-73402644 None:intergenic 20.0%
!! ATTAGTTTCATACTGAGATT+TGG - chr1_2:73395529-73395548 None:intergenic 25.0%
! TTAGCACAAAATAAAGAATC+AGG - chr1_2:73395605-73395624 None:intergenic 25.0%
! CAAAAATTACCATTTGCAAT+AGG + chr1_2:73395829-73395848 Msa0091250:intron 25.0%
!! AATTTAGAACCTATTGCAAA+TGG - chr1_2:73395841-73395860 None:intergenic 25.0%
! GAAACAAAAATTGATCTGAT+TGG - chr1_2:73395880-73395899 None:intergenic 25.0%
! TAAAACGACATCATTTGAAA+CGG - chr1_2:73396055-73396074 None:intergenic 25.0%
! ATTGAGAGTTATTATTGCAT+TGG + chr1_2:73396181-73396200 Msa0091250:intron 25.0%
!!! ATTGTTTGAAGTTCTAAGAT+GGG + chr1_2:73396379-73396398 Msa0091250:intron 25.0%
! AACAAACAGACACATAATTT+AGG - chr1_2:73396655-73396674 None:intergenic 25.0%
! TTATTAATGTCACAGAATAC+AGG + chr1_2:73396674-73396693 Msa0091250:intron 25.0%
! TTGACAATCTCTTGATATTT+GGG - chr1_2:73396852-73396871 None:intergenic 25.0%
! ATTGACAATCTCTTGATATT+TGG - chr1_2:73396853-73396872 None:intergenic 25.0%
! TAATTAACTCAAAAGATAGG+AGG - chr1_2:73396987-73397006 None:intergenic 25.0%
! TGTCTTATCTCAATGAAATT+TGG + chr1_2:73397389-73397408 Msa0091250:intron 25.0%
! TAACAGCTAATGCATTATTT+AGG - chr1_2:73397426-73397445 None:intergenic 25.0%
! CTTAAATCTGCTTAGAAAAT+AGG + chr1_2:73397798-73397817 Msa0091250:intron 25.0%
! TAAATCTGCTTAGAAAATAG+GGG + chr1_2:73397800-73397819 Msa0091250:intron 25.0%
! TTGAAATTCTAGTAATCACA+AGG + chr1_2:73397838-73397857 Msa0091250:intron 25.0%
!!! ACTATTCTATTAGTTTGTTC+TGG + chr1_2:73397874-73397893 Msa0091250:intron 25.0%
! CAATTCAATAACCAAATACT+TGG - chr1_2:73397966-73397985 None:intergenic 25.0%
!!! ACATTTTGCTTTTACTATAG+TGG + chr1_2:73398031-73398050 Msa0091250:intron 25.0%
! TTTCTTATCCATCATCAATA+AGG - chr1_2:73398650-73398669 None:intergenic 25.0%
! TGGGAATTAAAAATGTGATA+AGG + chr1_2:73398692-73398711 Msa0091250:intron 25.0%
!!! CTATGATTGTGCTTATTTTA+TGG - chr1_2:73398772-73398791 None:intergenic 25.0%
! TCTTATTACCTTAGATTAAG+AGG + chr1_2:73399498-73399517 Msa0091250:intron 25.0%
! AAATTAGACCTCTTAATCTA+AGG - chr1_2:73399509-73399528 None:intergenic 25.0%
! TTTATGTAATATGAGTAAGG+TGG + chr1_2:73399565-73399584 Msa0091250:intron 25.0%
! TTACAAATCTTGATTTATGC+AGG + chr1_2:73399594-73399613 Msa0091250:intron 25.0%
! TACAAATCTTGATTTATGCA+GGG + chr1_2:73399595-73399614 Msa0091250:intron 25.0%
! GATTACCAAATTAAGGAAAA+GGG - chr1_2:73399734-73399753 None:intergenic 25.0%
! AGATTACCAAATTAAGGAAA+AGG - chr1_2:73399735-73399754 None:intergenic 25.0%
! AACCAAAATTACCAGAATAA+GGG - chr1_2:73399790-73399809 None:intergenic 25.0%
! AAACCAAAATTACCAGAATA+AGG - chr1_2:73399791-73399810 None:intergenic 25.0%
! AATAAATGTCTCATAATGCT+TGG + chr1_2:73399870-73399889 Msa0091250:intron 25.0%
!!! TGATTCTTCATTTTTCTTTG+GGG + chr1_2:73399919-73399938 Msa0091250:intron 25.0%
!!! TACTAGTTCTACATTAAAGA+TGG - chr1_2:73400037-73400056 None:intergenic 25.0%
! TGTACCAACTGTAATTTATT+AGG + chr1_2:73400472-73400491 Msa0091250:intron 25.0%
! TAAAGAAAAATACAGGAGAA+TGG - chr1_2:73400552-73400571 None:intergenic 25.0%
!! AATCCTCTAAAGAAAAATAC+AGG - chr1_2:73400559-73400578 None:intergenic 25.0%
!! ATGAATTTTGTCTTCTGTTT+TGG + chr1_2:73400856-73400875 Msa0091250:intron 25.0%
! TGCATTATTATGTGAGAATT+TGG + chr1_2:73401082-73401101 Msa0091250:intron 25.0%
!! TTCAATTCTCTTTCTTTTCT+TGG + chr1_2:73401235-73401254 Msa0091250:intron 25.0%
! TACAACTGTTAATAATATGG+GGG - chr1_2:73401930-73401949 None:intergenic 25.0%
! GTCCGTCATAAATATAATAA+AGG + chr1_2:73402238-73402257 Msa0091250:three_prime_UTR 25.0%
! CCAAAAGTAAAAAATGGTAT+AGG - chr1_2:73402338-73402357 None:intergenic 25.0%
!!! CCTATACCATTTTTTACTTT+TGG + chr1_2:73402335-73402354 Msa0091250:three_prime_UTR 25.0%
!!! TACCATTTTTTACTTTTGGT+TGG + chr1_2:73402339-73402358 Msa0091250:three_prime_UTR 25.0%
!!! ACCATTTTTTACTTTTGGTT+GGG + chr1_2:73402340-73402359 Msa0091250:three_prime_UTR 25.0%
!!! TGATTTTTTGTGATCAGAGA+GGG - chr1_2:73395436-73395455 None:intergenic 30.0%
!!! TTGATTTTTTGTGATCAGAG+AGG - chr1_2:73395437-73395456 None:intergenic 30.0%
AAAACGAAGAAGAATTGGAT+CGG - chr1_2:73395497-73395516 None:intergenic 30.0%
ATCGAAAAACGAAGAAGAAT+TGG - chr1_2:73395502-73395521 None:intergenic 30.0%
!!! GAAGTATGGTTTTAAGAGAT+CGG - chr1_2:73395559-73395578 None:intergenic 30.0%
! ATTGGATCAAACCAGATTTT+TGG + chr1_2:73395645-73395664 Msa0091250:intron 30.0%
ACTTAATCCATCCAAAAATC+TGG - chr1_2:73395659-73395678 None:intergenic 30.0%
! AAGTAAACTGATTCAGAGAT+CGG - chr1_2:73395705-73395724 None:intergenic 30.0%
TGCAATGATTAGAAAGAGAA+TGG + chr1_2:73396075-73396094 Msa0091250:intron 30.0%
TCATTTACGGATAGAAATTG+TGG + chr1_2:73396248-73396267 Msa0091250:intron 30.0%
!! GATTGTTTGAAGTTCTAAGA+TGG + chr1_2:73396378-73396397 Msa0091250:intron 30.0%
! AGTGTGACTAAATTTTACGT+TGG + chr1_2:73396810-73396829 Msa0091250:intron 30.0%
GAGATTGTCAATATTCGTTT+AGG + chr1_2:73396861-73396880 Msa0091250:CDS 30.0%
ACTATTGATCAGGTATTTGA+AGG + chr1_2:73397208-73397227 Msa0091250:intron 30.0%
CAATGAAATTTGGATTATGC+AGG + chr1_2:73397399-73397418 Msa0091250:intron 30.0%
TTCTTTATCATTATCTGGGA+CGG - chr1_2:73397571-73397590 None:intergenic 30.0%
TTGCATGTCATCTTGATTAA+TGG + chr1_2:73397656-73397675 Msa0091250:intron 30.0%
!! ATTCTATTAGTTTGTTCTGG+AGG + chr1_2:73397877-73397896 Msa0091250:intron 30.0%
!! TTCTATTAGTTTGTTCTGGA+GGG + chr1_2:73397878-73397897 Msa0091250:intron 30.0%
!!! TCCTTTAAATTGGTTTTGCT+CGG + chr1_2:73397999-73398018 Msa0091250:intron 30.0%
! CTCTTGAATTGTATGACTTT+TGG + chr1_2:73398590-73398609 Msa0091250:intron 30.0%
ATTGTGATCTGTGTTTCATT+TGG + chr1_2:73398619-73398638 Msa0091250:intron 30.0%
! TGGATTTTCCTTATTGATGA+TGG + chr1_2:73398639-73398658 Msa0091250:intron 30.0%
CAGTCAAAATGAAGAAGAAA+GGG - chr1_2:73399056-73399075 None:intergenic 30.0%
ACAGTCAAAATGAAGAAGAA+AGG - chr1_2:73399057-73399076 None:intergenic 30.0%
AGTTTCTACATAAGAGTTGT+CGG - chr1_2:73399419-73399438 None:intergenic 30.0%
TATAAGCAATATCACAAGTG+AGG - chr1_2:73399463-73399482 None:intergenic 30.0%
ACCAAAATTACCAGAATAAG+GGG - chr1_2:73399789-73399808 None:intergenic 30.0%
TTCAACAATCAATACTGGTA+AGG - chr1_2:73399831-73399850 None:intergenic 30.0%
!! TACCAGTATTGATTGTTGAA+TGG + chr1_2:73399831-73399850 Msa0091250:intron 30.0%
!! TTCATTTTTCTTTGGGGATT+GGG + chr1_2:73399925-73399944 Msa0091250:intron 30.0%
! ATGTCTGTACAATTGCTATT+GGG + chr1_2:73400296-73400315 Msa0091250:intron 30.0%
GTGATAATACGTTCAATTGT+AGG - chr1_2:73400342-73400361 None:intergenic 30.0%
AGAATGGTAAAAGCAGTAAA+AGG - chr1_2:73400536-73400555 None:intergenic 30.0%
! TCTCCTGTATTTTTCTTTAG+AGG + chr1_2:73400553-73400572 Msa0091250:intron 30.0%
AGATCTGTATACATATAACC+AGG - chr1_2:73400739-73400758 None:intergenic 30.0%
CATGGTTAGAATTGGAATTT+GGG - chr1_2:73400815-73400834 None:intergenic 30.0%
!! TGTCTTCTGTTTTGGATAAA+AGG + chr1_2:73400864-73400883 Msa0091250:intron 30.0%
TGATCTTACCGGATATATTA+CGG + chr1_2:73400958-73400977 Msa0091250:CDS 30.0%
AACTAATCCAACATGGTTTA+TGG - chr1_2:73401060-73401079 None:intergenic 30.0%
!! ATTGGCTTGTGTTATATAGT+GGG + chr1_2:73401170-73401189 Msa0091250:intron 30.0%
! TTGTGTTATATAGTGGGATT+CGG + chr1_2:73401176-73401195 Msa0091250:intron 30.0%
!! GGTATTCTCTCTGAAAATTT+TGG + chr1_2:73401197-73401216 Msa0091250:intron 30.0%
CAGGGATCATATATATTTCA+TGG - chr1_2:73401322-73401341 None:intergenic 30.0%
TACCAATCTCATACAATTCA+GGG - chr1_2:73401340-73401359 None:intergenic 30.0%
ATACCAATCTCATACAATTC+AGG - chr1_2:73401341-73401360 None:intergenic 30.0%
TAATGCTTAGAATGTTTACC+AGG - chr1_2:73401381-73401400 None:intergenic 30.0%
ACACTCTAATGATGTATCAT+TGG + chr1_2:73401556-73401575 Msa0091250:intron 30.0%
AGAGAAAATTAGTAGATACC+AGG - chr1_2:73401846-73401865 None:intergenic 30.0%
GTTTCATTAATACCACTTCA+AGG - chr1_2:73401900-73401919 None:intergenic 30.0%
TATAGGAATCACAACATCTA+CGG - chr1_2:73402321-73402340 None:intergenic 30.0%
TAATAAGGATAGTTGTCACT+TGG + chr1_2:73402485-73402504 Msa0091250:three_prime_UTR 30.0%
ACGAACAGATAAATACATCA+AGG - chr1_2:73402517-73402536 None:intergenic 30.0%
!!! TGAAACAAGCTTTTTTAGTC+TGG + chr1_2:73402558-73402577 Msa0091250:three_prime_UTR 30.0%
!!! GAAACAAGCTTTTTTAGTCT+GGG + chr1_2:73402559-73402578 Msa0091250:three_prime_UTR 30.0%
!!! AAACAAGCTTTTTTAGTCTG+GGG + chr1_2:73402560-73402579 Msa0091250:three_prime_UTR 30.0%
!!! AAAAGTGGCTTTGGTTTTAT+AGG + chr1_2:73402591-73402610 Msa0091250:three_prime_UTR 30.0%
CTCCGAATTGTTAATTAGTT+TGG + chr1_2:73402620-73402639 Msa0091250:three_prime_UTR 30.0%
TATCCATAATTCTCTCTGTA+TGG + chr1_2:73402643-73402662 Msa0091250:three_prime_UTR 30.0%
AAAATCAAAAACCACAGCAC+AGG + chr1_2:73395449-73395468 Msa0091250:five_prime_UTR 35.0%
CCAATTGAACTCAGAAACAA+TGG - chr1_2:73395630-73395649 None:intergenic 35.0%
!! CCATTGTTTCTGAGTTCAAT+TGG + chr1_2:73395627-73395646 Msa0091250:intron 35.0%
!! GATCAAACCAGATTTTTGGA+TGG + chr1_2:73395649-73395668 Msa0091250:intron 35.0%
! TGTTTAGTTTCGATTCACTG+TGG + chr1_2:73395751-73395770 Msa0091250:intron 35.0%
GAATAAGTGTGCAGAGTAAT+TGG + chr1_2:73396150-73396169 Msa0091250:intron 35.0%
! CAAGTCTTATCCTACTAAGT+GGG - chr1_2:73396276-73396295 None:intergenic 35.0%
TTCGCTGTCTTAATGATTGA+TGG + chr1_2:73396314-73396333 Msa0091250:intron 35.0%
ACGAATACCATGAGTTATCA+AGG - chr1_2:73396612-73396631 None:intergenic 35.0%
ACTTTCTCAAGAATGACCAA+TGG - chr1_2:73396721-73396740 None:intergenic 35.0%
! AGGTATTTGAAGGTACATCT+GGG + chr1_2:73397218-73397237 Msa0091250:intron 35.0%
AAAACACATAATTGAGCCGA+TGG + chr1_2:73397507-73397526 Msa0091250:intron 35.0%
TTAAAAGGATAGCCAACCAT+CGG - chr1_2:73397526-73397545 None:intergenic 35.0%
ACATGTAAACCTAGAAACTG+TGG + chr1_2:73397765-73397784 Msa0091250:intron 35.0%
TTTCAGTTTCCACAGTTTCT+AGG - chr1_2:73397777-73397796 None:intergenic 35.0%
!! TCTATTAGTTTGTTCTGGAG+GGG + chr1_2:73397879-73397898 Msa0091250:intron 35.0%
AATACTTGGCTAAATTGCAG+AGG - chr1_2:73397952-73397971 None:intergenic 35.0%
CTGCAATTTAGCCAAGTATT+TGG + chr1_2:73397952-73397971 Msa0091250:intron 35.0%
CTACGGATATAAACAAGAGA+GGG - chr1_2:73398085-73398104 None:intergenic 35.0%
! ACAGGAGTTTTTAACACCTA+CGG - chr1_2:73398102-73398121 None:intergenic 35.0%
GTTAAAAACTCCTGTATCAC+TGG + chr1_2:73398107-73398126 Msa0091250:CDS 35.0%
ATGCTTGGTCGGATATTTAA+CGG + chr1_2:73398132-73398151 Msa0091250:CDS 35.0%
TCTGGAAAACCAATTGACAA+TGG + chr1_2:73398156-73398175 Msa0091250:CDS 35.0%
AAGTAAGCCTCAGGTAAAAT+TGG - chr1_2:73398186-73398205 None:intergenic 35.0%
! AATTTTACCTGAGGCTTACT+TGG + chr1_2:73398185-73398204 Msa0091250:CDS 35.0%
ACTGCATGTTTGTTTATGTC+TGG + chr1_2:73398243-73398262 Msa0091250:intron 35.0%
GTCATGAATTCTATTGCTAG+AGG + chr1_2:73398378-73398397 Msa0091250:CDS 35.0%
TGTGCAGCAATTTCATTATG+GGG - chr1_2:73398438-73398457 None:intergenic 35.0%
CTGTGCAGCAATTTCATTAT+GGG - chr1_2:73398439-73398458 None:intergenic 35.0%
TCTGTGCAGCAATTTCATTA+TGG - chr1_2:73398440-73398459 None:intergenic 35.0%
GAAGTCTGATAATCTTCTTG+AGG + chr1_2:73398494-73398513 Msa0091250:CDS 35.0%
!! TTTGACTACTTTTGCAAAGG+TGG - chr1_2:73398749-73398768 None:intergenic 35.0%
!! TGGTTTGACTACTTTTGCAA+AGG - chr1_2:73398752-73398771 None:intergenic 35.0%
CACAATCATAGTTGTCAAAG+CGG + chr1_2:73398781-73398800 Msa0091250:intron 35.0%
GGAAGAAGTGAAAGATTGAT+TGG - chr1_2:73399035-73399054 None:intergenic 35.0%
! AGAACAGAGATGAGATTTTG+TGG + chr1_2:73399098-73399117 Msa0091250:intron 35.0%
AAATCTTGATTTATGCAGGG+AGG + chr1_2:73399598-73399617 Msa0091250:intron 35.0%
! AGTGACCCTTTTCCTTAATT+TGG + chr1_2:73399726-73399745 Msa0091250:CDS 35.0%
TCTTTAATTCCCCCTTATTC+TGG + chr1_2:73399776-73399795 Msa0091250:intron 35.0%
CCAAAATTACCAGAATAAGG+GGG - chr1_2:73399788-73399807 None:intergenic 35.0%
AGCCATTCAACAATCAATAC+TGG - chr1_2:73399836-73399855 None:intergenic 35.0%
!! CTTCATTTTTCTTTGGGGAT+TGG + chr1_2:73399924-73399943 Msa0091250:intron 35.0%
!! TCATTTTTCTTTGGGGATTG+GGG + chr1_2:73399926-73399945 Msa0091250:intron 35.0%
GTACAGACATGTAAGAAACA+GGG - chr1_2:73400286-73400305 None:intergenic 35.0%
TGTACAGACATGTAAGAAAC+AGG - chr1_2:73400287-73400306 None:intergenic 35.0%
CATGTCTGTACAATTGCTAT+TGG + chr1_2:73400295-73400314 Msa0091250:intron 35.0%
! TTGCTATTGGGATTTACTGT+AGG + chr1_2:73400308-73400327 Msa0091250:intron 35.0%
GCATGGTTAGAATTGGAATT+TGG - chr1_2:73400816-73400835 None:intergenic 35.0%
TCATTTGGCATGGTTAGAAT+TGG - chr1_2:73400823-73400842 None:intergenic 35.0%
ATTCTAACCATGCCAAATGA+TGG + chr1_2:73400823-73400842 Msa0091250:CDS 35.0%
TTCTTTACCATCATTTGGCA+TGG - chr1_2:73400833-73400852 None:intergenic 35.0%
GTAATATATCCGGTAAGATC+AGG - chr1_2:73400959-73400978 None:intergenic 35.0%
ATGAATGCCATAAACCATGT+TGG + chr1_2:73401050-73401069 Msa0091250:intron 35.0%
!! CATTGGCTTGTGTTATATAG+TGG + chr1_2:73401169-73401188 Msa0091250:intron 35.0%
ATCCCTGAATTGTATGAGAT+TGG + chr1_2:73401335-73401354 Msa0091250:intron 35.0%
! ATGGAAGAACATTGATTGGT+GGG - chr1_2:73401439-73401458 None:intergenic 35.0%
! AGTGATGGAAGAACATTGAT+TGG - chr1_2:73401443-73401462 None:intergenic 35.0%
ATGTTCTTCCATCACTATCT+CGG + chr1_2:73401447-73401466 Msa0091250:CDS 35.0%
GATTTCAAAGTTCTGTCAAG+TGG + chr1_2:73401497-73401516 Msa0091250:intron 35.0%
CTGTATGCAAATTATGCCAT+TGG + chr1_2:73401763-73401782 Msa0091250:CDS 35.0%
TGCAAATTATGCCATTGGAA+AGG + chr1_2:73401768-73401787 Msa0091250:CDS 35.0%
TAGTGAAATTGTCCTTGAAG+TGG + chr1_2:73401885-73401904 Msa0091250:intron 35.0%
! ACAGTTGTATCTGGAATTTC+TGG + chr1_2:73401941-73401960 Msa0091250:intron 35.0%
! AATTTCTGGACAAGTTTGAG+AGG + chr1_2:73401955-73401974 Msa0091250:CDS 35.0%
TAGAGACTGGAATATATTGC+GGG - chr1_2:73402009-73402028 None:intergenic 35.0%
CTAGAGACTGGAATATATTG+CGG - chr1_2:73402010-73402029 None:intergenic 35.0%
TATACGATGAAGAAGTTCAC+GGG - chr1_2:73402063-73402082 None:intergenic 35.0%
GTATACGATGAAGAAGTTCA+CGG - chr1_2:73402064-73402083 None:intergenic 35.0%
ATCATCAATTACCAGCATCT+CGG - chr1_2:73402115-73402134 None:intergenic 35.0%
AATCAATTGCCCATGACATT+AGG - chr1_2:73402181-73402200 None:intergenic 35.0%
ATAGGAATCACAACATCTAC+GGG - chr1_2:73402320-73402339 None:intergenic 35.0%
GCCCAACCAAAAGTAAAAAA+TGG - chr1_2:73402344-73402363 None:intergenic 35.0%
GAAACAAGCAAACATACACT+GGG - chr1_2:73402423-73402442 None:intergenic 35.0%
TGAAACAAGCAAACATACAC+TGG - chr1_2:73402424-73402443 None:intergenic 35.0%
CTAATTAACAATTCGGAGCT+TGG - chr1_2:73402618-73402637 None:intergenic 35.0%
! AACGACATCATTTGAAACGG+AGG - chr1_2:73396052-73396071 None:intergenic 40.0%
TAAGTGTGCAGAGTAATTGG+AGG + chr1_2:73396153-73396172 Msa0091250:intron 40.0%
AAGTGTGCAGAGTAATTGGA+GGG + chr1_2:73396154-73396173 Msa0091250:intron 40.0%
GCTAAAGCGACACTCATTTA+CGG + chr1_2:73396235-73396254 Msa0091250:intron 40.0%
AATTGTGGAACCCACTTAGT+AGG + chr1_2:73396263-73396282 Msa0091250:intron 40.0%
! CCAAGTCTTATCCTACTAAG+TGG - chr1_2:73396277-73396296 None:intergenic 40.0%
CCACTTAGTAGGATAAGACT+TGG + chr1_2:73396274-73396293 Msa0091250:intron 40.0%
!! TTGAAGTTCTAAGATGGGTG+TGG + chr1_2:73396384-73396403 Msa0091250:intron 40.0%
!! ACGTGTCTTATTGGTTTACG+TGG + chr1_2:73396457-73396476 Msa0091250:intron 40.0%
! GCATGTTAATTTTCCCCTGT+GGG + chr1_2:73396479-73396498 Msa0091250:intron 40.0%
TATGTATACACACACCCACA+GGG - chr1_2:73396496-73396515 None:intergenic 40.0%
! CAATCTGCCTTGATAACTCA+TGG + chr1_2:73396602-73396621 Msa0091250:intron 40.0%
GGTCATTCTTGAGAAAGTGA+AGG + chr1_2:73396723-73396742 Msa0091250:CDS 40.0%
GTCAATATTCGTTTAGGCGA+TGG + chr1_2:73396867-73396886 Msa0091250:CDS 40.0%
ATGATGGTTATGCATGCTGA+AGG - chr1_2:73396955-73396974 None:intergenic 40.0%
AAGAATGCTACTCAGAAGCT+CGG - chr1_2:73397055-73397074 None:intergenic 40.0%
! CAGGTATTTGAAGGTACATC+TGG + chr1_2:73397217-73397236 Msa0091250:intron 40.0%
TTTACGACCGTACAGTTTAC+TGG + chr1_2:73397253-73397272 Msa0091250:CDS 40.0%
TACCTCTCCAGTAAACTGTA+CGG - chr1_2:73397263-73397282 None:intergenic 40.0%
GGTAGCAGTAGCAGTTTAAA+AGG - chr1_2:73397541-73397560 None:intergenic 40.0%
! ATTATCTGGGACGGTTTAGT+AGG - chr1_2:73397562-73397581 None:intergenic 40.0%
GCTTAGGGGATAGTTACAAT+TGG - chr1_2:73397601-73397620 None:intergenic 40.0%
ATCTGCTTAGAAAATAGGGG+AGG + chr1_2:73397803-73397822 Msa0091250:intron 40.0%
!! CTATTAGTTTGTTCTGGAGG+GGG + chr1_2:73397880-73397899 Msa0091250:intron 40.0%
GCCGAGCAAAACCAATTTAA+AGG - chr1_2:73398003-73398022 None:intergenic 40.0%
CCTACGGATATAAACAAGAG+AGG - chr1_2:73398086-73398105 None:intergenic 40.0%
! CCTCTCTTGTTTATATCCGT+AGG + chr1_2:73398083-73398102 Msa0091250:intron 40.0%
TAAGCCTCAGGTAAAATTGG+CGG - chr1_2:73398183-73398202 None:intergenic 40.0%
GATATATCCAAGTAAGCCTC+AGG - chr1_2:73398195-73398214 None:intergenic 40.0%
GAGGCTTACTTGGATATATC+AGG + chr1_2:73398195-73398214 Msa0091250:CDS 40.0%
AATTTCATTATGGGGGAGAC+CGG - chr1_2:73398430-73398449 None:intergenic 40.0%
GTGCAGCAATTTCATTATGG+GGG - chr1_2:73398437-73398456 None:intergenic 40.0%
GATTGGAGATCTAGAGATCT+AGG - chr1_2:73399018-73399037 None:intergenic 40.0%
!!! TGCCATTGTTTTTGCAGCTA+TGG + chr1_2:73399639-73399658 Msa0091250:CDS 40.0%
!!! GCCATTGTTTTTGCAGCTAT+GGG + chr1_2:73399640-73399659 Msa0091250:CDS 40.0%
TCCCATAGCTGCAAAAACAA+TGG - chr1_2:73399644-73399663 None:intergenic 40.0%
!!! GTTTTTCAAGCGTGACTTTG+AGG + chr1_2:73399684-73399703 Msa0091250:CDS 40.0%
! CCCCCTTATTCTGGTAATTT+TGG + chr1_2:73399785-73399804 Msa0091250:intron 40.0%
!! CATTTTTCTTTGGGGATTGG+GGG + chr1_2:73399927-73399946 Msa0091250:intron 40.0%
!! ACTTCGCATGTGTTTGGTTT+TGG - chr1_2:73400073-73400092 None:intergenic 40.0%
CTGTAGGATCAAGAACAAGA+AGG - chr1_2:73400674-73400693 None:intergenic 40.0%
CTTCTTGTTCTTGATCCTAC+AGG + chr1_2:73400672-73400691 Msa0091250:intron 40.0%
GCAACAATTTATGAACGTGC+CGG + chr1_2:73400760-73400779 Msa0091250:CDS 40.0%
TCTTACCGGATATATTACGG+AGG + chr1_2:73400961-73400980 Msa0091250:CDS 40.0%
CTTACCGGATATATTACGGA+GGG + chr1_2:73400962-73400981 Msa0091250:CDS 40.0%
TTACCGGATATATTACGGAG+GGG + chr1_2:73400963-73400982 Msa0091250:CDS 40.0%
TAGGCAGTTGCATAATAGAC+AGG + chr1_2:73401000-73401019 Msa0091250:CDS 40.0%
CAGTTGCATAATAGACAGGT+GGG + chr1_2:73401004-73401023 Msa0091250:intron 40.0%
ATGCAGCAACTAATCCAACA+TGG - chr1_2:73401067-73401086 None:intergenic 40.0%
TACAATCAGTCTAAGTGACC+TGG + chr1_2:73401360-73401379 Msa0091250:intron 40.0%
! GATGGAAGAACATTGATTGG+TGG - chr1_2:73401440-73401459 None:intergenic 40.0%
TTCATCAACCGAGATAGTGA+TGG - chr1_2:73401458-73401477 None:intergenic 40.0%
!! ATCACTATCTCGGTTGATGA+AGG + chr1_2:73401457-73401476 Msa0091250:CDS 40.0%
!! AGAAGAAGCACTTTCATCTG+AGG + chr1_2:73401819-73401838 Msa0091250:CDS 40.0%
ATACGATGAAGAAGTTCACG+GGG - chr1_2:73402062-73402081 None:intergenic 40.0%
GTAAAACTGGTCAAGAGTCT+TGG - chr1_2:73402090-73402109 None:intergenic 40.0%
!! TATGACGGACAGAACAAATG+TGG - chr1_2:73402228-73402247 None:intergenic 40.0%
AGCCTGTTCAGTTAGTCAAA+AGG + chr1_2:73402290-73402309 Msa0091250:three_prime_UTR 40.0%
!! CTCCTTTTGACTAACTGAAC+AGG - chr1_2:73402295-73402314 None:intergenic 40.0%
TACTTGTGTTGCACACAGTT+TGG + chr1_2:73402371-73402390 Msa0091250:three_prime_UTR 40.0%
ACTTGTGTTGCACACAGTTT+GGG + chr1_2:73402372-73402391 Msa0091250:three_prime_UTR 40.0%
! TTTGGGATGGTTGGAATTTG+TGG + chr1_2:73402389-73402408 Msa0091250:three_prime_UTR 40.0%
!!! CTTTTTTAGTCTGGGGAATC+TGG + chr1_2:73402567-73402586 Msa0091250:three_prime_UTR 40.0%
GCACCATACAGAGAGAATTA+TGG - chr1_2:73402649-73402668 None:intergenic 40.0%
ATTCTCTCTGTATGGTGCTT+TGG + chr1_2:73402651-73402670 Msa0091250:three_prime_UTR 40.0%
TTGTGATCAGAGAGGGAGAT+GGG - chr1_2:73395429-73395448 None:intergenic 45.0%
TTTGTGATCAGAGAGGGAGA+TGG - chr1_2:73395430-73395449 None:intergenic 45.0%
AATGCTAGCGACAATGACGA+CGG + chr1_2:73396412-73396431 Msa0091250:CDS 45.0%
GGAATGGGTACGTGTCTTAT+TGG + chr1_2:73396448-73396467 Msa0091250:intron 45.0%
! GGCATGTTAATTTTCCCCTG+TGG + chr1_2:73396478-73396497 Msa0091250:intron 45.0%
ATGTATACACACACCCACAG+GGG - chr1_2:73396495-73396514 None:intergenic 45.0%
CTATGTATACACACACCCAC+AGG - chr1_2:73396497-73396516 None:intergenic 45.0%
ACAGAATACAGGACTGTGTC+TGG + chr1_2:73396685-73396704 Msa0091250:intron 45.0%
CTCAAGAATGACCAATGGTC+CGG - chr1_2:73396716-73396735 None:intergenic 45.0%
TTACGTTGGTCAACTGCATC+AGG + chr1_2:73396824-73396843 Msa0091250:intron 45.0%
TACGTTGGTCAACTGCATCA+GGG + chr1_2:73396825-73396844 Msa0091250:intron 45.0%
TAGGAGGCAAGTACAGATGA+TGG - chr1_2:73396971-73396990 None:intergenic 45.0%
AATAAAGCAGACAGCGATGG+AGG - chr1_2:73397088-73397107 None:intergenic 45.0%
GTGAATAAAGCAGACAGCGA+TGG - chr1_2:73397091-73397110 None:intergenic 45.0%
CACATAATTGAGCCGATGGT+TGG + chr1_2:73397511-73397530 Msa0091250:intron 45.0%
!! AGCAGTTTTGGCATGCTTAG+GGG - chr1_2:73397615-73397634 None:intergenic 45.0%
!! CAGCAGTTTTGGCATGCTTA+GGG - chr1_2:73397616-73397635 None:intergenic 45.0%
!! ACAGCAGTTTTGGCATGCTT+AGG - chr1_2:73397617-73397636 None:intergenic 45.0%
! AAGGGGGATAACAGCAGTTT+TGG - chr1_2:73397627-73397646 None:intergenic 45.0%
ACATGCAACACAGTCTGAAG+GGG - chr1_2:73397644-73397663 None:intergenic 45.0%
GACATGCAACACAGTCTGAA+GGG - chr1_2:73397645-73397664 None:intergenic 45.0%
TGACATGCAACACAGTCTGA+AGG - chr1_2:73397646-73397665 None:intergenic 45.0%
ATTGCAGAGGAACAGAGGAT+GGG - chr1_2:73397939-73397958 None:intergenic 45.0%
AATTGCAGAGGAACAGAGGA+TGG - chr1_2:73397940-73397959 None:intergenic 45.0%
GCTAAATTGCAGAGGAACAG+AGG - chr1_2:73397944-73397963 None:intergenic 45.0%
TATCACTGGACATGCTTGGT+CGG + chr1_2:73398121-73398140 Msa0091250:CDS 45.0%
GGTCGGATATTTAACGGTTC+TGG + chr1_2:73398138-73398157 Msa0091250:CDS 45.0%
! ATTGGCGGACCATTGTCAAT+TGG - chr1_2:73398168-73398187 None:intergenic 45.0%
TCCAGTCTGTATCATCTCCT+CGG - chr1_2:73398343-73398362 None:intergenic 45.0%
! ATCCCTCTATTTTCAGCTGC+CGG + chr1_2:73398408-73398427 Msa0091250:CDS 45.0%
! TGATAAGGTTACAGCGCTGA+AGG + chr1_2:73398707-73398726 Msa0091250:intron 45.0%
TAGTTGTCAAAGCGGAAACG+CGG + chr1_2:73398789-73398808 Msa0091250:intron 45.0%
AGGCAAAAGCGGAACAAAAG+CGG - chr1_2:73399201-73399220 None:intergenic 45.0%
TTGTCAATAGCGGTCTAACG+CGG - chr1_2:73399289-73399308 None:intergenic 45.0%
GTGCTCTCTGTTGTCAATAG+CGG - chr1_2:73399299-73399318 None:intergenic 45.0%
TCTTGATTTATGCAGGGAGG+AGG + chr1_2:73399601-73399620 Msa0091250:intron 45.0%
TGCAGCTATGGGAGTTAACA+TGG + chr1_2:73399651-73399670 Msa0091250:CDS 45.0%
! AAGCGTGACTTTGAGGAGAA+CGG + chr1_2:73399691-73399710 Msa0091250:CDS 45.0%
ACCAAACACATGCGAAGTGT+AGG + chr1_2:73400075-73400094 Msa0091250:intron 45.0%
CCAAACACATGCGAAGTGTA+GGG + chr1_2:73400076-73400095 Msa0091250:intron 45.0%
GCAGTAGTAAGAGCAATACG+AGG - chr1_2:73400366-73400385 None:intergenic 45.0%
TTATGCTGATGCTCTTCGTG+AGG + chr1_2:73400446-73400465 Msa0091250:CDS 45.0%
TTTACGCCCCTCAATTCTTC+CGG - chr1_2:73400782-73400801 None:intergenic 45.0%
CATCCAACTCCTGATCTTAC+CGG + chr1_2:73400947-73400966 Msa0091250:CDS 45.0%
TATCCGGTAAGATCAGGAGT+TGG - chr1_2:73400953-73400972 None:intergenic 45.0%
AGGGGCAGATATACATCGAT+AGG + chr1_2:73400981-73401000 Msa0091250:CDS 45.0%
GCAGTTGCATAATAGACAGG+TGG + chr1_2:73401003-73401022 Msa0091250:intron 45.0%
TCATTCTGATGTGTCCAACC+AGG + chr1_2:73401623-73401642 Msa0091250:CDS 45.0%
CAAACAAGAAGAGACCTGGT+TGG - chr1_2:73401640-73401659 None:intergenic 45.0%
GGAACAAACAAGAAGAGACC+TGG - chr1_2:73401644-73401663 None:intergenic 45.0%
CAACAACAGCTTTCATTGCC+TGG - chr1_2:73401798-73401817 None:intergenic 45.0%
CAGGCAATGAAAGCTGTTGT+TGG + chr1_2:73401796-73401815 Msa0091250:CDS 45.0%
! GAATATATTGCGGGTGTCGT+AGG - chr1_2:73402000-73402019 None:intergenic 45.0%
TCCAGTCTCTAGATCTTGCA+TGG + chr1_2:73402018-73402037 Msa0091250:CDS 45.0%
TCCATGCAAGATCTAGAGAC+TGG - chr1_2:73402022-73402041 None:intergenic 45.0%
ATCTTGCATGGACCTTACTC+CGG + chr1_2:73402030-73402049 Msa0091250:CDS 45.0%
TACGATGAAGAAGTTCACGG+GGG - chr1_2:73402061-73402080 None:intergenic 45.0%
TCAATCAGCGCCTAATGTCA+TGG + chr1_2:73402168-73402187 Msa0091250:three_prime_UTR 45.0%
CAATCAGCGCCTAATGTCAT+GGG + chr1_2:73402169-73402188 Msa0091250:three_prime_UTR 45.0%
GGACAGAACAAATGTGGACT+AGG - chr1_2:73402222-73402241 None:intergenic 45.0%
ACTGAACAGGCTCGAAAATG+AGG - chr1_2:73402282-73402301 None:intergenic 45.0%
GAATCTGGCAAAAGTGGCTT+TGG + chr1_2:73402582-73402601 Msa0091250:three_prime_UTR 45.0%
!!! ATTATAATTTTTTTAATAAG+GGG - chr1_2:73400233-73400252 None:intergenic 5.0%
!!! CATTATAATTTTTTTAATAA+GGG - chr1_2:73400234-73400253 None:intergenic 5.0%
!!! TCATTATAATTTTTTTAATA+AGG - chr1_2:73400235-73400254 None:intergenic 5.0%
TGACGTACATACCTGTGCTG+TGG - chr1_2:73395463-73395482 None:intergenic 50.0%
GGCACCTTGGAGATAGGAAT+GGG + chr1_2:73396433-73396452 Msa0091250:CDS 50.0%
CGTACCCATTCCTATCTCCA+AGG - chr1_2:73396440-73396459 None:intergenic 50.0%
GTTTAGGCGATGGAACTACC+CGG + chr1_2:73396877-73396896 Msa0091250:CDS 50.0%
GGACAAGTTCTCGAGGTTGA+TGG + chr1_2:73396903-73396922 Msa0091250:CDS 50.0%
!! TCTCGAGGTTGATGGCGAAA+AGG + chr1_2:73396911-73396930 Msa0091250:CDS 50.0%
TGGCGAAAAGGCTGTTGTTC+AGG + chr1_2:73396923-73396942 Msa0091250:CDS 50.0%
CTCAGAAGCTCGGAACACTT+TGG - chr1_2:73397045-73397064 None:intergenic 50.0%
GACCGTACAGTTTACTGGAG+AGG + chr1_2:73397258-73397277 Msa0091250:CDS 50.0%
CATGCAACACAGTCTGAAGG+GGG - chr1_2:73397643-73397662 None:intergenic 50.0%
! TTCTGGAGGGGGAATTTCTC+AGG + chr1_2:73397891-73397910 Msa0091250:intron 50.0%
!! AGGATGGGCTAAATCTCGTG+AGG - chr1_2:73397924-73397943 None:intergenic 50.0%
AGAGGGACAGATGAAGTCAG+AGG - chr1_2:73398068-73398087 None:intergenic 50.0%
CCAAGCATGTCCAGTGATAC+AGG - chr1_2:73398120-73398139 None:intergenic 50.0%
CCTGTATCACTGGACATGCT+TGG + chr1_2:73398117-73398136 Msa0091250:CDS 50.0%
! TGGTCCGCCAATTTTACCTG+AGG + chr1_2:73398176-73398195 Msa0091250:CDS 50.0%
GGTTCTCTCACTAGGGTTGA+TGG - chr1_2:73398316-73398335 None:intergenic 50.0%
CGGGATAGGTTCTCTCACTA+GGG - chr1_2:73398323-73398342 None:intergenic 50.0%
TCGGGATAGGTTCTCTCACT+AGG - chr1_2:73398324-73398343 None:intergenic 50.0%
TAGTGAGAGAACCTATCCCG+AGG + chr1_2:73398323-73398342 Msa0091250:CDS 50.0%
CTGTATCATCTCCTCGGGAT+AGG - chr1_2:73398337-73398356 None:intergenic 50.0%
CCAGTCTGTATCATCTCCTC+GGG - chr1_2:73398342-73398361 None:intergenic 50.0%
GACCGGCAGCTGAAAATAGA+GGG - chr1_2:73398413-73398432 None:intergenic 50.0%
AGACCGGCAGCTGAAAATAG+AGG - chr1_2:73398414-73398433 None:intergenic 50.0%
GCACAGATTTGTCGTCAAGC+TGG + chr1_2:73398453-73398472 Msa0091250:CDS 50.0%
GGCAAAAGCGGAACAAAAGC+GGG - chr1_2:73399200-73399219 None:intergenic 50.0%
! CTTTGAGGAGAACGGCTCAA+TGG + chr1_2:73399699-73399718 Msa0091250:CDS 50.0%
CCCTACACTTCGCATGTGTT+TGG - chr1_2:73400079-73400098 None:intergenic 50.0%
TGAACGTGCCGGAAGAATTG+AGG + chr1_2:73400771-73400790 Msa0091250:CDS 50.0%
GAACGTGCCGGAAGAATTGA+GGG + chr1_2:73400772-73400791 Msa0091250:CDS 50.0%
AACGTGCCGGAAGAATTGAG+GGG + chr1_2:73400773-73400792 Msa0091250:CDS 50.0%
! GGAAGAATTGAGGGGCGTAA+AGG + chr1_2:73400781-73400800 Msa0091250:CDS 50.0%
CTGCCCCTCCGTAATATATC+CGG - chr1_2:73400969-73400988 None:intergenic 50.0%
! TCACCACTGCAGAGTGCTAT+TGG + chr1_2:73401579-73401598 Msa0091250:intron 50.0%
! CACCACTGCAGAGTGCTATT+GGG + chr1_2:73401580-73401599 Msa0091250:intron 50.0%
! ACCACTGCAGAGTGCTATTG+GGG + chr1_2:73401581-73401600 Msa0091250:intron 50.0%
TGGGGAGGGAATGACTAGAA+AGG + chr1_2:73401599-73401618 Msa0091250:CDS 50.0%
TGCCATTGGAAAGGATGTCC+AGG + chr1_2:73401777-73401796 Msa0091250:CDS 50.0%
TGCCTGGACATCCTTTCCAA+TGG - chr1_2:73401782-73401801 None:intergenic 50.0%
AGCACTTTCATCTGAGGACC+TGG + chr1_2:73401825-73401844 Msa0091250:CDS 50.0%
!! TGAGAGGAAGTTTGTTGCCC+AGG + chr1_2:73401971-73401990 Msa0091250:CDS 50.0%
!! GAGAGGAAGTTTGTTGCCCA+GGG + chr1_2:73401972-73401991 Msa0091250:CDS 50.0%
GAAGTTCACGGGGGAAAATC+CGG - chr1_2:73402052-73402071 None:intergenic 50.0%
AACTGGTCAAGAGTCTTGGC+TGG - chr1_2:73402086-73402105 None:intergenic 50.0%
CAGCATCTCGGCTGTAAAAC+TGG - chr1_2:73402103-73402122 None:intergenic 50.0%
! CAGTTTTACAGCCGAGATGC+TGG + chr1_2:73402101-73402120 Msa0091250:CDS 50.0%
!! ACATTAGGCGCTGATTGAGC+AGG - chr1_2:73402166-73402185 None:intergenic 50.0%
GTGTTGCACACAGTTTGGGA+TGG + chr1_2:73402376-73402395 Msa0091250:three_prime_UTR 50.0%
! TGCACACAGTTTGGGATGGT+TGG + chr1_2:73402380-73402399 Msa0091250:three_prime_UTR 50.0%
TCTGGGGAATCTGGCAAAAG+TGG + chr1_2:73402576-73402595 Msa0091250:three_prime_UTR 50.0%
GAACGTGGGTGAGACTCACT+GGG - chr1_2:73395407-73395426 None:intergenic 55.0%
AGAGAGGGAGATGGGAACGT+GGG - chr1_2:73395421-73395440 None:intergenic 55.0%
CGGCACCTTGGAGATAGGAA+TGG + chr1_2:73396432-73396451 Msa0091250:CDS 55.0%
! AGGACTGTGTCTGGAGTTGC+CGG + chr1_2:73396694-73396713 Msa0091250:CDS 55.0%
GGGACAGATGAAGTCAGAGG+TGG - chr1_2:73398065-73398084 None:intergenic 55.0%
CCCGAGGAGATGATACAGAC+TGG + chr1_2:73398339-73398358 Msa0091250:CDS 55.0%
GGCCACCCCAAAAATTGACG+CGG + chr1_2:73398820-73398839 Msa0091250:intron 55.0%
! ACCGCGCCGCGTCAATTTTT+GGG - chr1_2:73398829-73398848 None:intergenic 55.0%
! TACCGCGCCGCGTCAATTTT+TGG - chr1_2:73398830-73398849 None:intergenic 55.0%
GGTCAATGCGGGCAAAAAGC+GGG - chr1_2:73399169-73399188 None:intergenic 55.0%
GGGTCAATGCGGGCAAAAAG+CGG - chr1_2:73399170-73399189 None:intergenic 55.0%
GAACAAAAGCGGGTCAACGC+GGG - chr1_2:73399190-73399209 None:intergenic 55.0%
GGAACAAAAGCGGGTCAACG+CGG - chr1_2:73399191-73399210 None:intergenic 55.0%
AGTCGCGCGTTAGGCAAAAG+CGG - chr1_2:73399212-73399231 None:intergenic 55.0%
! CTTTTGCCTAACGCGCGACT+CGG + chr1_2:73399212-73399231 Msa0091250:intron 55.0%
CTCTGGCAGCAGATACCTGT+AGG - chr1_2:73400690-73400709 None:intergenic 55.0%
GGTATCTGCTGCCAGAGAAG+AGG + chr1_2:73400693-73400712 Msa0091250:intron 55.0%
TCTTCCTGGCACCTCTTCTC+TGG - chr1_2:73400707-73400726 None:intergenic 55.0%
CCAGGATAACCACGTCTTCC+TGG - chr1_2:73400721-73400740 None:intergenic 55.0%
CCAGGAAGACGTGGTTATCC+TGG + chr1_2:73400718-73400737 Msa0091250:CDS 55.0%
TCCCCAATAGCACTCTGCAG+TGG - chr1_2:73401585-73401604 None:intergenic 55.0%
! ACTGCAGAGTGCTATTGGGG+AGG + chr1_2:73401584-73401603 Msa0091250:intron 55.0%
! CTGCAGAGTGCTATTGGGGA+GGG + chr1_2:73401585-73401604 Msa0091250:intron 55.0%
ACGGGGGAAAATCCGGAGTA+AGG - chr1_2:73402045-73402064 None:intergenic 55.0%
GGAACGTGGGTGAGACTCAC+TGG - chr1_2:73395408-73395427 None:intergenic 60.0%
CAGAGAGGGAGATGGGAACG+TGG - chr1_2:73395422-73395441 None:intergenic 60.0%
CGACAATGACGACGGCACCT+TGG + chr1_2:73396420-73396439 Msa0091250:CDS 60.0%
GACGACGGCACCTTGGAGAT+AGG + chr1_2:73396427-73396446 Msa0091250:CDS 60.0%
! GTCTGGAGTTGCCGGACCAT+TGG + chr1_2:73396702-73396721 Msa0091250:CDS 60.0%
CTCGAGAACTTGTCCACGCC+GGG - chr1_2:73396898-73396917 None:intergenic 60.0%
CCTCGAGAACTTGTCCACGC+CGG - chr1_2:73396899-73396918 None:intergenic 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG - chr1_2:73398825-73398844 None:intergenic 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG - chr1_2:73398828-73398847 None:intergenic 60.0%
CCCCAAAAATTGACGCGGCG+CGG + chr1_2:73398825-73398844 Msa0091250:intron 60.0%
AATTGACGCGGCGCGGTAAG+CGG + chr1_2:73398832-73398851 Msa0091250:intron 60.0%
! GCGGGCGCTTTTACATGACG+CGG + chr1_2:73398862-73398881 Msa0091250:intron 60.0%
GGTCAACGCGGGCAAAAAGC+GGG - chr1_2:73399148-73399167 None:intergenic 60.0%
GGGTCAACGCGGGCAAAAAG+CGG - chr1_2:73399149-73399168 None:intergenic 60.0%
GGCAAAAAGCGGGTCAACGC+GGG - chr1_2:73399159-73399178 None:intergenic 60.0%
GGGCAAAAAGCGGGTCAACG+CGG - chr1_2:73399160-73399179 None:intergenic 60.0%
!! GAAGAGGTGCCAGGAAGACG+TGG + chr1_2:73400709-73400728 Msa0091250:CDS 60.0%
CCGGCGTGGACAAGTTCTCG+AGG + chr1_2:73396896-73396915 Msa0091250:CDS 65.0%
GTCAAAGCGGAAACGCGGCG+CGG + chr1_2:73398794-73398813 Msa0091250:intron 65.0%
ATTGACGCGGCGCGGTAAGC+GGG + chr1_2:73398833-73398852 Msa0091250:intron 65.0%
GGGTCAACGCGGGTCAATGC+GGG - chr1_2:73399180-73399199 None:intergenic 65.0%
CGGGTCAACGCGGGTCAATG+CGG - chr1_2:73399181-73399200 None:intergenic 65.0%
!! GCTGCCAGAGAAGAGGTGCC+AGG + chr1_2:73400700-73400719 Msa0091250:CDS 65.0%
GGCGATGGAACTACCCGGCG+TGG + chr1_2:73396882-73396901 Msa0091250:CDS 70.0%
ACGCGACCGAGTCGCGCGTT+AGG - chr1_2:73399221-73399240 None:intergenic 70.0%
CGGTCGCGTTCTGACGCGCT+AGG + chr1_2:73399232-73399251 Msa0091250:intron 70.0%
GGTCTAACGCGGCGCGATCG+CGG - chr1_2:73399278-73399297 None:intergenic 70.0%
! GCGGGTGTCGTAGGCTCCCT+GGG - chr1_2:73401991-73402010 None:intergenic 70.0%
! TGCGGGTGTCGTAGGCTCCC+TGG - chr1_2:73401992-73402011 None:intergenic 70.0%
! AGCGGAAACGCGGCGCGGCG+CGG + chr1_2:73398799-73398818 Msa0091250:intron 80.0%
! CGCGGTAAGCGGGCGCGACG+CGG + chr1_2:73398843-73398862 Msa0091250:intron 80.0%
! GCGGTAAGCGGGCGCGACGC+GGG + chr1_2:73398844-73398863 Msa0091250:intron 80.0%
! AACGCGGCGCGATCGCGGCG+CGG - chr1_2:73399273-73399292 None:intergenic 80.0%
! GGCGCGATCGCGGCGCGGAG+CGG - chr1_2:73399268-73399287 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 73395392 73402719 73395392 ID=Msa0091250;Name=Msa0091250
chr1_2 mRNA 73395392 73402719 73395392 ID=Msa0091250-mRNA-1;Parent=Msa0091250;Name=Msa0091250-mRNA-1;_AED=0.12;_eAED=0.12;_QI=86|1|1|1|0.92|0.86|15|589|489
chr1_2 exon 73395392 73395470 73395392 ID=Msa0091250-mRNA-1:exon:25676;Parent=Msa0091250-mRNA-1
chr1_2 exon 73396390 73396454 73396390 ID=Msa0091250-mRNA-1:exon:25677;Parent=Msa0091250-mRNA-1
chr1_2 exon 73396689 73396744 73396689 ID=Msa0091250-mRNA-1:exon:25678;Parent=Msa0091250-mRNA-1
chr1_2 exon 73396846 73396944 73396846 ID=Msa0091250-mRNA-1:exon:25679;Parent=Msa0091250-mRNA-1
chr1_2 exon 73397220 73397279 73397220 ID=Msa0091250-mRNA-1:exon:25680;Parent=Msa0091250-mRNA-1
chr1_2 exon 73398105 73398216 73398105 ID=Msa0091250-mRNA-1:exon:25681;Parent=Msa0091250-mRNA-1
chr1_2 exon 73398307 73398515 73398307 ID=Msa0091250-mRNA-1:exon:25682;Parent=Msa0091250-mRNA-1
chr1_2 exon 73399616 73399747 73399616 ID=Msa0091250-mRNA-1:exon:25683;Parent=Msa0091250-mRNA-1
chr1_2 exon 73400330 73400467 73400330 ID=Msa0091250-mRNA-1:exon:25684;Parent=Msa0091250-mRNA-1
chr1_2 exon 73400694 73400844 73400694 ID=Msa0091250-mRNA-1:exon:25685;Parent=Msa0091250-mRNA-1
chr1_2 exon 73400939 73401021 73400939 ID=Msa0091250-mRNA-1:exon:25686;Parent=Msa0091250-mRNA-1
chr1_2 exon 73401431 73401478 73401431 ID=Msa0091250-mRNA-1:exon:25687;Parent=Msa0091250-mRNA-1
chr1_2 exon 73401591 73401644 73401591 ID=Msa0091250-mRNA-1:exon:25688;Parent=Msa0091250-mRNA-1
chr1_2 exon 73401763 73401846 73401763 ID=Msa0091250-mRNA-1:exon:25689;Parent=Msa0091250-mRNA-1
chr1_2 exon 73401945 73402719 73401945 ID=Msa0091250-mRNA-1:exon:25690;Parent=Msa0091250-mRNA-1
chr1_2 five_prime_UTR 73395392 73395470 73395392 ID=Msa0091250-mRNA-1:five_prime_utr;Parent=Msa0091250-mRNA-1
chr1_2 five_prime_UTR 73396390 73396396 73396390 ID=Msa0091250-mRNA-1:five_prime_utr;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73396397 73396454 73396397 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73396689 73396744 73396689 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73396846 73396944 73396846 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73397220 73397279 73397220 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73398105 73398216 73398105 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73398307 73398515 73398307 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73399616 73399747 73399616 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73400330 73400467 73400330 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73400694 73400844 73400694 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73400939 73401021 73400939 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73401431 73401478 73401431 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73401591 73401644 73401591 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73401763 73401846 73401763 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 CDS 73401945 73402130 73401945 ID=Msa0091250-mRNA-1:cds;Parent=Msa0091250-mRNA-1
chr1_2 three_prime_UTR 73402131 73402719 73402131 ID=Msa0091250-mRNA-1:three_prime_utr;Parent=Msa0091250-mRNA-1
Gene Sequence

>Msa0091250

ATGGGTGTGGCTCAGAATGCTAGCGACAATGACGACGGCACCTTGGAGATAGGAATGGAATACAGGACTGTGTCTGGAGTTGCCGGACCATTGGTCATTCTTGAGAAAGTGAAGGGACCCAAATATCAAGAGATTGTCAATATTCGTTTAGGCGATGGAACTACCCGGCGTGGACAAGTTCTCGAGGTTGATGGCGAAAAGGCTGTTGTTCAGGTATTTGAAGGTACATCTGGGATTGACAATAAATTTACGACCGTACAGTTTACTGGAGAGGTGTTAAAAACTCCTGTATCACTGGACATGCTTGGTCGGATATTTAACGGTTCTGGAAAACCAATTGACAATGGTCCGCCAATTTTACCTGAGGCTTACTTGGATATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCCGAGGAGATGATACAGACTGGAATATCTACAATTGACGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTTTCAGCTGCCGGTCTCCCCCATAATGAAATTGCTGCACAGATTTGTCGTCAAGCTGGCTTAGTCAAGCGACTAGAGAAGTCTGATAATCTTCTTGAGGGAGGAGGAGAAGACGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAGCGTGACTTTGAGGAGAACGGCTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATCTGGCGTATGAATGTGGCAAGCATGTTCTCGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCAGAGAAGAGGTGCCAGGAAGACGTGGTTATCCTGGTTATATGTATACAGATCTTGCAACAATTTATGAACGTGCCGGAAGAATTGAGGGGCGTAAAGGCTCAATTACCCAAATTCCAATTCTAACCATGCCAAATGATGATATTACACATCCAACTCCTGATCTTACCGGATATATTACGGAGGGGCAGATATACATCGATAGGCAGTTGCATAATAGACAGATATACCCACCAATCAATGTTCTTCCATCACTATCTCGGTTGATGAAGAGTGCTATTGGGGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGCTGTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTTGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGTTGTATCTGGAATTTCTGGACAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAGCCTACGACACCCGCAATATATTCCAGTCTCTAGATCTTGCATGGACCTTACTCCGGATTTTCCCCCGTGAACTTCTTCATCGTATACCAGCCAAGACTCTTGACCAGTTTTACAGCCGAGATGCTGGTAATTGA
Protein sequence

>Msa0091250

MGVAQNASDNDDGTLEIGMEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN*