AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027770 MtrunA17_Chr1g0184181 96.721 610 20 0 1 610 1 610 0.0 1212
Msa0027770 MtrunA17_Chr8g0388631 28.514 498 331 6 91 574 65 551 8.32e-49 179
Msa0027770 MtrunA17_Chr8g0346601 27.823 496 337 8 91 575 52 537 1.12e-43 165
Msa0027770 MtrunA17_Chr3g0117701 26.639 488 342 6 104 582 266 746 2.85e-42 163
Msa0027770 MtrunA17_Chr6g0450741 27.677 495 325 7 98 574 190 669 1.57e-40 157
Msa0027770 MtrunA17_Chr4g0059101 25.102 490 355 5 91 573 167 651 2.50e-40 156
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027770 AT2G31240.1 68.116 552 170 4 42 590 63 611 0.0 775
Msa0027770 AT3G27960.1 29.679 529 352 10 87 603 141 661 1.33e-52 192
Msa0027770 AT3G27960.3 29.679 529 352 10 87 603 141 661 1.33e-52 192
Msa0027770 AT3G27960.2 29.476 458 307 7 87 533 141 593 6.91e-48 177
Msa0027770 AT4G10840.1 28.681 523 338 9 93 591 78 589 1.23e-47 177
Msa0027770 AT4G10840.2 28.664 464 297 8 93 533 78 530 1.50e-43 164
Msa0027770 AT1G27500.1 26.582 474 335 5 114 579 161 629 5.73e-41 159
Msa0027770 AT1G27500.2 26.582 474 335 5 114 579 172 640 7.50e-41 158

Find 163 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATATCAGTCATATATTT+TGG 0.085468 1_1:-52372527 Msa0027770:three_prime_UTR
TGCTATGAGTTTGCAGTTAA+TGG 0.164879 1_1:-52375495 Msa0027770:CDS
GAAGCAGGCTATTCCTTATT+TGG 0.171283 1_1:-52374565 Msa0027770:CDS
TGGTTATATCTACAACAATT+TGG 0.200770 1_1:-52374490 Msa0027770:CDS
GGTTTGAAATGGGGTGTATA+AGG 0.212869 1_1:+52375802 None:intergenic
AGCTTTGGTCCCAAACATTT+TGG 0.213827 1_1:-52374516 Msa0027770:CDS
GCTGCGTGTGTATTATTATT+AGG 0.225487 1_1:+52372850 None:intergenic
GGTATCTTAATAAGGCTAAT+AGG 0.226066 1_1:-52375430 Msa0027770:CDS
TCGGAAGTGTTTGGAGATTA+AGG 0.232786 1_1:-52375279 Msa0027770:CDS
TAATAAGGCTAATAGGGTTT+TGG 0.236340 1_1:-52375423 Msa0027770:CDS
GAGGAAGATAGTGAGGAGTT+AGG 0.240509 1_1:-52375245 Msa0027770:CDS
ATGCTGCAGGTGTACTATTA+TGG 0.241724 1_1:+52372788 None:intergenic
GGCGCTTCCGTATTGTTTAA+AGG 0.255513 1_1:-52375168 Msa0027770:CDS
AATTATATAAGCTAGCTTAT+TGG 0.260877 1_1:+52372643 None:intergenic
GGTTATATCTACAACAATTT+GGG 0.261299 1_1:-52374489 Msa0027770:CDS
GGGTGGTTGTTGTTGCTTAC+AGG 0.274076 1_1:-52374594 Msa0027770:CDS
AGGAGTTAGGGAAAGGGAAT+AGG 0.275680 1_1:-52375232 Msa0027770:CDS
GAGCATTTCTTGGGTTGTTT+TGG 0.276205 1_1:+52375688 None:intergenic
TCAGCAGCACTTTCCAAATA+AGG 0.279505 1_1:+52374552 None:intergenic
AAAAGTTTGCAGACTGTAAA+AGG 0.282943 1_1:-52374821 Msa0027770:CDS
GGTTTAGCTGCATTGAAAAT+TGG 0.289450 1_1:-52375620 Msa0027770:CDS
CGAATGCTTTGAGCATTTCT+TGG 0.290758 1_1:+52375678 None:intergenic
GTCTTAATTATGGTTTAAAT+AGG 0.293303 1_1:-52375469 Msa0027770:CDS
TGTGTCAGGTTGGGAGTTAC+TGG 0.296347 1_1:+52372765 None:intergenic
AATAGGTTTAGTGATAGTTT+AGG 0.302645 1_1:-52375452 Msa0027770:CDS
TCAAAGGCTTATGGTGATAT+TGG 0.309390 1_1:-52374342 Msa0027770:CDS
AGGAAGATAGTGAGGAGTTA+GGG 0.310369 1_1:-52375244 Msa0027770:CDS
ATAGGTTTAGTGATAGTTTA+GGG 0.311847 1_1:-52375451 Msa0027770:CDS
TTAATGGGTAGTCTTAATTA+TGG 0.322455 1_1:-52375479 Msa0027770:CDS
ATAAGCTAGCTTATTGGTAT+TGG 0.325138 1_1:+52372649 None:intergenic
CAGAATCTTTCAAAGGCTTA+TGG 0.327198 1_1:-52374351 Msa0027770:CDS
CCTCCGAGTGCTGCTCTTGT+GGG 0.336592 1_1:+52374637 None:intergenic
TATGTCAGGTTGGGAGTTAT+TGG 0.341920 1_1:+52372825 None:intergenic
AGGTGTTTAGAGATTTCTAT+TGG 0.345983 1_1:-52374801 Msa0027770:CDS
GTATCTTAATAAGGCTAATA+GGG 0.348444 1_1:-52375429 Msa0027770:CDS
AGGGTGGACATGGTTTGAAA+TGG 0.351871 1_1:+52375791 None:intergenic
GAGATACATACGAAGCGATT+AGG 0.352147 1_1:-52375140 Msa0027770:CDS
TATTTGACTGAATTGGTTGC+TGG 0.355631 1_1:-52372598 Msa0027770:three_prime_UTR
GGCGTTGGAGCAGAATGTTT+TGG 0.362731 1_1:-52375042 Msa0027770:CDS
AGAGAATCTTCGGAAGTGTT+TGG 0.370920 1_1:-52375288 Msa0027770:CDS
GCGAATATGATGATTGCTTT+GGG 0.375275 1_1:-52374957 Msa0027770:CDS
ATAACCAACTCCAAAATGTT+TGG 0.376664 1_1:+52374506 None:intergenic
GGGTGGACATGGTTTGAAAT+GGG 0.378368 1_1:+52375792 None:intergenic
GTGTTTGTGTTGATGATGTT+AGG 0.380305 1_1:-52375382 Msa0027770:CDS
TAGTTTAGGGTATCTTAATA+AGG 0.387240 1_1:-52375438 Msa0027770:CDS
GGAAATTTCATTCAATGAAA+AGG 0.398867 1_1:-52375648 Msa0027770:CDS
CTTCTTCTGCACTTGCTCCA+TGG 0.399591 1_1:+52372965 None:intergenic
AGATACATACGAAGCGATTA+GGG 0.403607 1_1:-52375139 Msa0027770:CDS
CCCTCCGAGTGCTGCTCTTG+TGG 0.404697 1_1:+52374636 None:intergenic
GTTTGAAATGGGGTGTATAA+GGG 0.406264 1_1:+52375803 None:intergenic
GCTATGAGTTTGCAGTTAAT+GGG 0.407040 1_1:-52375494 Msa0027770:CDS
CTGTTGAGGTTGCGCATGAT+AGG 0.407770 1_1:-52375109 Msa0027770:CDS
CTACTTGGGATTGTTTATAG+TGG 0.409766 1_1:-52375083 Msa0027770:CDS
GGATGTCTGCTAAACTGTTC+GGG 0.410647 1_1:+52372729 None:intergenic
TGCGAATATGATGATTGCTT+TGG 0.410869 1_1:-52374958 Msa0027770:CDS
GGGGTGTATAAGGGTTTGTT+GGG 0.412378 1_1:+52375812 None:intergenic
AGCAGCAAGTTATAGATGCT+TGG 0.412778 1_1:-52372993 Msa0027770:CDS
AGCTCTTGTGCTTGTATCAA+TGG 0.413035 1_1:-52374865 Msa0027770:CDS
GGAGTTAGGGAAAGGGAATA+GGG 0.418677 1_1:-52375231 Msa0027770:CDS
TAACCAACTCCAAAATGTTT+GGG 0.419203 1_1:+52374507 None:intergenic
GGAAGTGTATCTGCAAGAAT+AGG 0.426493 1_1:-52374615 Msa0027770:CDS
GGGGAAAGCGTTATGTAATC+AGG 0.427739 1_1:-52374844 Msa0027770:CDS
GGGTGTATAAGGGTTTGTTG+GGG 0.431964 1_1:+52375813 None:intergenic
AGGATGTCTGCTAAACTGTT+CGG 0.436022 1_1:+52372728 None:intergenic
GCTCTTGTGCTTGTATCAAT+GGG 0.440321 1_1:-52374864 Msa0027770:CDS
GAATGCTTTGAGCATTTCTT+GGG 0.441209 1_1:+52375679 None:intergenic
GGTGTATAAGGGTTTGTTGG+GGG 0.442205 1_1:+52375814 None:intergenic
AAGAGGCGCTAGAGAATCTT+CGG 0.442376 1_1:-52375298 Msa0027770:CDS
GGTGTTTAGAGATTTCTATT+GGG 0.444294 1_1:-52374800 Msa0027770:CDS
GGAAAGTGAAGAGCCTTCAT+AGG 0.447539 1_1:+52372871 None:intergenic
GATTGACGTGGCGGTGTGTC+AGG 0.451015 1_1:+52372751 None:intergenic
GCAGCAAGTTATAGATGCTT+GGG 0.454415 1_1:-52372992 Msa0027770:CDS
TCATGCTGTGCAATTTGAGT+TGG 0.455338 1_1:-52375351 Msa0027770:CDS
TGGGGTGTATAAGGGTTTGT+TGG 0.456078 1_1:+52375811 None:intergenic
TGCTGCAGGTGTACTATTAT+GGG 0.459170 1_1:+52372789 None:intergenic
GAAGTGTATCTGCAAGAATA+GGG 0.459783 1_1:-52374614 Msa0027770:CDS
ATAGTGAGGAGTTAGGGAAA+GGG 0.461155 1_1:-52375238 Msa0027770:CDS
AACTGCAAACTCATAGCATA+AGG 0.469559 1_1:+52375500 None:intergenic
TGGGATTGTTTATAGTGGGA+TGG 0.477155 1_1:-52375078 Msa0027770:CDS
CAAGAAATGCTCAAAGCATT+CGG 0.480287 1_1:-52375677 Msa0027770:CDS
GTCAGCAGCGCAGATGTTTG+CGG 0.481206 1_1:-52374436 Msa0027770:CDS
GCGCATGATAGGAAGCTACT+TGG 0.485658 1_1:-52375098 Msa0027770:CDS
AGAAACCTCCATGATATCCT+TGG 0.489502 1_1:+52374410 None:intergenic
TCATTCAATGAAAAGGAGCT+TGG 0.491295 1_1:-52375641 Msa0027770:CDS
GCTAATGTTAAGACGGCGAT+GGG 0.491334 1_1:-52375329 Msa0027770:CDS
TTTGGGTAGGTTAGAGAATG+AGG 0.492492 1_1:-52375405 Msa0027770:CDS
GAACGGTTGAAAGAGAGCTT+TGG 0.492632 1_1:-52374531 Msa0027770:CDS
TACTTGGGATTGTTTATAGT+GGG 0.493758 1_1:-52375082 Msa0027770:CDS
GTTGTTGTTGCTTACAGGTA+AGG 0.496912 1_1:-52374589 Msa0027770:CDS
TGCAAATGAGGTTCCTATGA+AGG 0.499756 1_1:-52372884 Msa0027770:CDS
ACGAGCAAGATGAGAGAAGA+AGG 0.502527 1_1:+52375892 None:intergenic
GAAGAATTGGAATCTCAGTT+CGG 0.503248 1_1:-52375006 Msa0027770:CDS
GATGTAACGGTATGTCAGGT+TGG 0.504036 1_1:+52372815 None:intergenic
AAAATATGCTGTTGTGAAAG+AGG 0.504715 1_1:+52372708 None:intergenic
TTGATGAATGCCTATGGTAC+TGG 0.507101 1_1:-52372687 Msa0027770:three_prime_UTR
GATAGTGAGGAGTTAGGGAA+AGG 0.510103 1_1:-52375239 Msa0027770:CDS
CTGCGATTTCGTTGCTGAAG+AGG 0.511189 1_1:-52374683 Msa0027770:CDS
ATGTAACGGTATGTCAGGTT+GGG 0.511251 1_1:+52372816 None:intergenic
TTGGGTAGGTTAGAGAATGA+GGG 0.511672 1_1:-52375404 Msa0027770:CDS
ACGTGGCGGTGTGTCAGGTT+GGG 0.514066 1_1:+52372756 None:intergenic
GCTCAAAGCATTCGGTGAGA+TGG 0.514737 1_1:-52375669 Msa0027770:CDS
GATATCATGGAGGTTTCTCT+TGG 0.517703 1_1:-52374405 Msa0027770:CDS
GTTCATAGTTTCATATAGCA+TGG 0.522310 1_1:+52374716 None:intergenic
GATTGTTTATAGTGGGATGG+AGG 0.522341 1_1:-52375075 Msa0027770:CDS
GACGTGGCGGTGTGTCAGGT+TGG 0.523342 1_1:+52372755 None:intergenic
TGCGATTTCGTTGCTGAAGA+GGG 0.530007 1_1:-52374682 Msa0027770:CDS
TGCGGTAGCCAAGGATATCA+TGG 0.531067 1_1:-52374418 Msa0027770:CDS
CCGCGGTGTCTCTGCAAATG+AGG 0.535152 1_1:-52372896 Msa0027770:CDS
TGTCTAGGAGAGATTTGAGT+GGG 0.536028 1_1:+52375758 None:intergenic
GAAAGGGAATAGGGATTTAG+CGG 0.537665 1_1:-52375222 Msa0027770:CDS
GCTTACAGGTAAGGTGAAGC+AGG 0.537806 1_1:-52374580 Msa0027770:CDS
TGGGATGGAGGATCATGATA+AGG 0.538786 1_1:-52375063 Msa0027770:CDS
GGAAGTTTCTGAGGCATACT+CGG 0.541766 1_1:-52374745 Msa0027770:CDS
AAACTTTATACCAGTACCAT+AGG 0.543632 1_1:+52372677 None:intergenic
GGTGGACATGGTTTGAAATG+GGG 0.545688 1_1:+52375793 None:intergenic
CTATTATGGGATTGATGTAA+CGG 0.547602 1_1:+52372802 None:intergenic
GAAACTCAATTGCAAGGGAA+TGG 0.548823 1_1:+52373016 None:intergenic
CCACAAGAGCAGCACTCGGA+GGG 0.552886 1_1:-52374636 Msa0027770:CDS
CGCATGATAGGAAGCTACTT+GGG 0.552961 1_1:-52375097 Msa0027770:CDS
TGAGTTGGCTAATGTTAAGA+CGG 0.567694 1_1:-52375336 Msa0027770:CDS
GATTGATGTAACGGTATGTC+AGG 0.570067 1_1:+52372811 None:intergenic
GGCGATGGGGAGGAGAGAAG+AGG 0.570707 1_1:-52375315 Msa0027770:CDS
GGAGGATCATGATAAGGCGT+TGG 0.570847 1_1:-52375057 Msa0027770:CDS
TCTAACGCCTTTAAACAATA+CGG 0.571467 1_1:+52375161 None:intergenic
AGCATGTCAGAATCTTTCAA+AGG 0.573306 1_1:-52374358 Msa0027770:CDS
GGCTAATGTTAAGACGGCGA+TGG 0.573411 1_1:-52375330 Msa0027770:CDS
GGGAGATACGATGAAGCTGT+TGG 0.573991 1_1:-52374936 Msa0027770:CDS
GCTGCTGAAACTCAATTGCA+AGG 0.574173 1_1:+52373010 None:intergenic
AATTGCACAGCATGAAGCAC+AGG 0.576090 1_1:+52375359 None:intergenic
GTTATATCTACAACAATTTG+GGG 0.576788 1_1:-52374488 Msa0027770:CDS
AGGCTTATGGTGATATTGGA+AGG 0.580409 1_1:-52374338 Msa0027770:intron
CTGCTGAAACTCAATTGCAA+GGG 0.582844 1_1:+52373011 None:intergenic
ATTAGGGATGAATTCTGTTG+AGG 0.587352 1_1:-52375123 Msa0027770:CDS
CTCATTTGCAGAGACACCGC+GGG 0.591950 1_1:+52372897 None:intergenic
TACACCGGTGGAAGTTTCTG+AGG 0.595722 1_1:-52374754 Msa0027770:CDS
ATGTTAAGACGGCGATGGGG+AGG 0.595931 1_1:-52375325 Msa0027770:CDS
GCAGATGTTTGCGGTAGCCA+AGG 0.596662 1_1:-52374427 Msa0027770:CDS
GGTCTTAAGCTTGATCGTGA+AGG 0.602523 1_1:-52375599 Msa0027770:CDS
TGGGAGTTACTGGATGCTGC+AGG 0.602801 1_1:+52372775 None:intergenic
AACATCTGCGCTGCTGACTG+AGG 0.607323 1_1:+52374441 None:intergenic
GCTCCCACAAGAGCAGCACT+CGG 0.608859 1_1:-52374640 Msa0027770:CDS
ATAGATGCTTGGGAAAGCCA+TGG 0.619820 1_1:-52372982 Msa0027770:CDS
ATTTGGAAAGTGCTGCTGAA+CGG 0.624374 1_1:-52374548 Msa0027770:CDS
TCGCGGAGAGGAGAGAGAGA+AGG 0.627138 1_1:+52375860 None:intergenic
TAAACTGTTCGGGATTGACG+TGG 0.629660 1_1:+52372739 None:intergenic
TTTAGCGGAAGCTTATGTTG+CGG 0.637589 1_1:-52375207 Msa0027770:CDS
CCCACAAGAGCAGCACTCGG+AGG 0.640444 1_1:-52374637 Msa0027770:CDS
TAAGCTTGATCGTGAAGGTG+AGG 0.642260 1_1:-52375594 Msa0027770:CDS
AAGAGAACAGATTACACCGG+TGG 0.642489 1_1:-52374766 Msa0027770:CDS
CGAATATGATGATTGCTTTG+GGG 0.644617 1_1:-52374956 Msa0027770:CDS
TCAATTGTATCTGCATGATG+TGG 0.648031 1_1:+52374381 None:intergenic
ACTGTTCGGGATTGACGTGG+CGG 0.661175 1_1:+52372742 None:intergenic
TTGTCTAGGAGAGATTTGAG+TGG 0.661188 1_1:+52375757 None:intergenic
TTGATGGATGCATCGCGGAG+AGG 0.665367 1_1:+52375848 None:intergenic
TATGCCTCAGAAACTTCCAC+CGG 0.674657 1_1:+52374750 None:intergenic
GTGTATCTGCAAGAATAGGG+TGG 0.702061 1_1:-52374611 Msa0027770:CDS
CCTCATTTGCAGAGACACCG+CGG 0.706770 1_1:+52372896 None:intergenic
CTCTTGTGCTTGTATCAATG+GGG 0.708946 1_1:-52374863 Msa0027770:CDS
TAAAAGAGAACAGATTACAC+CGG 0.715171 1_1:-52374769 Msa0027770:CDS
TTATATCTACAACAATTTGG+GGG 0.722117 1_1:-52374487 Msa0027770:CDS
GAGGGTTGATGGATGCATCG+CGG 0.733291 1_1:+52375843 None:intergenic
CTAATGTTAAGACGGCGATG+GGG 0.738436 1_1:-52375328 Msa0027770:CDS
GGTAGCCAAGGATATCATGG+AGG 0.746203 1_1:-52374415 Msa0027770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATTTCATTATTTAGAT+CGG - chr1_1:52375046-52375065 Msa0027770:CDS 15.0%
!! CTTGAATTACAAAAATATTT+AGG - chr1_1:52375171-52375190 Msa0027770:CDS 15.0%
!! TTACAAAAATATTTAGGAAT+CGG - chr1_1:52375177-52375196 Msa0027770:CDS 15.0%
!! GTCTTAATTATGGTTTAAAT+AGG - chr1_1:52372975-52372994 Msa0027770:CDS 20.0%
!!! CAGTTTAAACATTTAACTTT+TGG - chr1_1:52374226-52374245 Msa0027770:intron 20.0%
!!! AACAATTATTTTGAGACTTA+AGG - chr1_1:52374286-52374305 Msa0027770:intron 20.0%
!!! ATAAAACTTAGTTTGATAGA+TGG + chr1_1:52374745-52374764 None:intergenic 20.0%
!! AATTCAAGTACATACTATAT+AGG + chr1_1:52375159-52375178 None:intergenic 20.0%
!!! TTCATGTTTTCCTAAAATAT+TGG - chr1_1:52375397-52375416 Msa0027770:CDS 20.0%
!!! AATTATATAAGCTAGCTTAT+TGG + chr1_1:52375804-52375823 None:intergenic 20.0%
!!! TTAGTTTTATTTGACTGAAT+TGG - chr1_1:52375839-52375858 Msa0027770:CDS 20.0%
! GGAAATTTCATTCAATGAAA+AGG - chr1_1:52372796-52372815 Msa0027770:CDS 25.0%
!! TTAATGGGTAGTCTTAATTA+TGG - chr1_1:52372965-52372984 Msa0027770:CDS 25.0%
! AATAGGTTTAGTGATAGTTT+AGG - chr1_1:52372992-52373011 Msa0027770:CDS 25.0%
! ATAGGTTTAGTGATAGTTTA+GGG - chr1_1:52372993-52373012 Msa0027770:CDS 25.0%
!! TAGTTTAGGGTATCTTAATA+AGG - chr1_1:52373006-52373025 Msa0027770:CDS 25.0%
! GTATCTTAATAAGGCTAATA+GGG - chr1_1:52373015-52373034 Msa0027770:CDS 25.0%
! TGGTTATATCTACAACAATT+TGG - chr1_1:52373954-52373973 Msa0027770:intron 25.0%
! GGTTATATCTACAACAATTT+GGG - chr1_1:52373955-52373974 Msa0027770:intron 25.0%
! GTTATATCTACAACAATTTG+GGG - chr1_1:52373956-52373975 Msa0027770:intron 25.0%
! TTATATCTACAACAATTTGG+GGG - chr1_1:52373957-52373976 Msa0027770:intron 25.0%
!!! ATTATTTTGAGACTTAAGGA+TGG - chr1_1:52374290-52374309 Msa0027770:intron 25.0%
! CTGCTTTCAAAAGAAAAATT+AGG - chr1_1:52374412-52374431 Msa0027770:CDS 25.0%
! TTTCATATAAGTAGCTATGT+TGG - chr1_1:52374531-52374550 Msa0027770:CDS 25.0%
!!! ATCAATGTTTTGCTTGTTTT+TGG - chr1_1:52375011-52375030 Msa0027770:CDS 25.0%
! AAAAATATTTAGGAATCGGA+AGG - chr1_1:52375181-52375200 Msa0027770:CDS 25.0%
!! AACTGTATATGTTTTTCCAA+CGG - chr1_1:52375369-52375388 Msa0027770:CDS 25.0%
GGTATCTTAATAAGGCTAAT+AGG - chr1_1:52373014-52373033 Msa0027770:CDS 30.0%
! TAATAAGGCTAATAGGGTTT+TGG - chr1_1:52373021-52373040 Msa0027770:intron 30.0%
! AATAAGGCTAATAGGGTTTT+GGG - chr1_1:52373022-52373041 Msa0027770:intron 30.0%
!!! TGTTGCGGTTTTGAATTTTA+AGG - chr1_1:52373252-52373271 Msa0027770:intron 30.0%
TCTAACGCCTTTAAACAATA+CGG + chr1_1:52373286-52373305 None:intergenic 30.0%
TACTTGGGATTGTTTATAGT+GGG - chr1_1:52373362-52373381 Msa0027770:intron 30.0%
AAAAGTTTGCAGACTGTAAA+AGG - chr1_1:52373623-52373642 Msa0027770:intron 30.0%
AGGTGTTTAGAGATTTCTAT+TGG - chr1_1:52373643-52373662 Msa0027770:intron 30.0%
GGTGTTTAGAGATTTCTATT+GGG - chr1_1:52373644-52373663 Msa0027770:intron 30.0%
TAAAAGAGAACAGATTACAC+CGG - chr1_1:52373675-52373694 Msa0027770:intron 30.0%
GTTCATAGTTTCATATAGCA+TGG + chr1_1:52373731-52373750 None:intergenic 30.0%
TAACCAACTCCAAAATGTTT+GGG + chr1_1:52373940-52373959 None:intergenic 30.0%
ATAACCAACTCCAAAATGTT+TGG + chr1_1:52373941-52373960 None:intergenic 30.0%
AACCAAGAGAAACAATATCA+GGG + chr1_1:52374162-52374181 None:intergenic 30.0%
AAACCAAGAGAAACAATATC+AGG + chr1_1:52374163-52374182 None:intergenic 30.0%
!! TTGTTGATTCTGCAAACAAT+TGG - chr1_1:52374181-52374200 Msa0027770:intron 30.0%
!! ATTCTGCAAACAATTGGTTT+TGG - chr1_1:52374187-52374206 Msa0027770:intron 30.0%
!!! TTCTGCAAACAATTGGTTTT+GGG - chr1_1:52374188-52374207 Msa0027770:intron 30.0%
TCTCAAAATAATTGTTCCAC+TGG + chr1_1:52374282-52374301 None:intergenic 30.0%
AAGAAAAATTAGGCTGTGTT+TGG - chr1_1:52374422-52374441 Msa0027770:CDS 30.0%
TTATGAGCATAGCATGAATA+AGG + chr1_1:52374683-52374702 None:intergenic 30.0%
ATCTTGAGTACAAAGAGTTA+TGG - chr1_1:52374935-52374954 Msa0027770:CDS 30.0%
AGCACATTATCCAAAAAGAA+GGG + chr1_1:52375309-52375328 None:intergenic 30.0%
AAGCACATTATCCAAAAAGA+AGG + chr1_1:52375310-52375329 None:intergenic 30.0%
! GAAAACATGAATTTTTCCGT+TGG + chr1_1:52375388-52375407 None:intergenic 30.0%
CTATTATGGGATTGATGTAA+CGG + chr1_1:52375645-52375664 None:intergenic 30.0%
AAAATATGCTGTTGTGAAAG+AGG + chr1_1:52375739-52375758 None:intergenic 30.0%
!!! CATATTTTGATGAATGCCTA+TGG - chr1_1:52375751-52375770 Msa0027770:CDS 30.0%
AAACTTTATACCAGTACCAT+AGG + chr1_1:52375770-52375789 None:intergenic 30.0%
! ATAAGCTAGCTTATTGGTAT+TGG + chr1_1:52375798-52375817 None:intergenic 30.0%
! CAGATTTTACAGATTTGTGT+AGG - chr1_1:52375873-52375892 Msa0027770:CDS 30.0%
! GTTTGAAATGGGGTGTATAA+GGG + chr1_1:52372644-52372663 None:intergenic 35.0%
! GAATGCTTTGAGCATTTCTT+GGG + chr1_1:52372768-52372787 None:intergenic 35.0%
! CAAGAAATGCTCAAAGCATT+CGG - chr1_1:52372767-52372786 Msa0027770:CDS 35.0%
TCATTCAATGAAAAGGAGCT+TGG - chr1_1:52372803-52372822 Msa0027770:CDS 35.0%
GGTTTAGCTGCATTGAAAAT+TGG - chr1_1:52372824-52372843 Msa0027770:CDS 35.0%
!! GCAAATTCAAGAGCTTTTTC+AGG + chr1_1:52372878-52372897 None:intergenic 35.0%
AACTGCAAACTCATAGCATA+AGG + chr1_1:52372947-52372966 None:intergenic 35.0%
TGCTATGAGTTTGCAGTTAA+TGG - chr1_1:52372949-52372968 Msa0027770:CDS 35.0%
GCTATGAGTTTGCAGTTAAT+GGG - chr1_1:52372950-52372969 Msa0027770:CDS 35.0%
!! GTGTTTGTGTTGATGATGTT+AGG - chr1_1:52373062-52373081 Msa0027770:intron 35.0%
! TGAGTTGGCTAATGTTAAGA+CGG - chr1_1:52373108-52373127 Msa0027770:intron 35.0%
! GATTAAGGAGATGACTTTTG+AGG - chr1_1:52373180-52373199 Msa0027770:intron 35.0%
!!! TGCGGTTTTGAATTTTAAGG+AGG - chr1_1:52373255-52373274 Msa0027770:intron 35.0%
AGATACATACGAAGCGATTA+GGG - chr1_1:52373305-52373324 Msa0027770:intron 35.0%
ATTAGGGATGAATTCTGTTG+AGG - chr1_1:52373321-52373340 Msa0027770:intron 35.0%
CTACTTGGGATTGTTTATAG+TGG - chr1_1:52373361-52373380 Msa0027770:intron 35.0%
!! CGCAGAAGATTTTGAAGAAT+TGG - chr1_1:52373425-52373444 Msa0027770:intron 35.0%
GAAGAATTGGAATCTCAGTT+CGG - chr1_1:52373438-52373457 Msa0027770:intron 35.0%
TGCGAATATGATGATTGCTT+TGG - chr1_1:52373486-52373505 Msa0027770:intron 35.0%
GCGAATATGATGATTGCTTT+GGG - chr1_1:52373487-52373506 Msa0027770:intron 35.0%
CGAATATGATGATTGCTTTG+GGG - chr1_1:52373488-52373507 Msa0027770:intron 35.0%
GAAGTGTATCTGCAAGAATA+GGG - chr1_1:52373830-52373849 Msa0027770:intron 35.0%
TCAATTGTATCTGCATGATG+TGG + chr1_1:52374066-52374085 None:intergenic 35.0%
AGCATGTCAGAATCTTTCAA+AGG - chr1_1:52374086-52374105 Msa0027770:intron 35.0%
CAGAATCTTTCAAAGGCTTA+TGG - chr1_1:52374093-52374112 Msa0027770:intron 35.0%
TCAAAGGCTTATGGTGATAT+TGG - chr1_1:52374102-52374121 Msa0027770:intron 35.0%
TATGGTGATATTGGAAGGTA+TGG - chr1_1:52374111-52374130 Msa0027770:intron 35.0%
! TTCCCTGATATTGTTTCTCT+TGG - chr1_1:52374157-52374176 Msa0027770:intron 35.0%
TGGACATATACCTAATAGTG+TGG - chr1_1:52374246-52374265 Msa0027770:intron 35.0%
GGACATATACCTAATAGTGT+GGG - chr1_1:52374247-52374266 Msa0027770:intron 35.0%
AATCTGAATCCCACACTATT+AGG + chr1_1:52374259-52374278 None:intergenic 35.0%
TCTGACATAAAATAGAGTGC+AGG - chr1_1:52374344-52374363 Msa0027770:CDS 35.0%
CTGACATAAAATAGAGTGCA+GGG - chr1_1:52374345-52374364 Msa0027770:CDS 35.0%
TAAGAACTAGCAACAGTGTT+TGG + chr1_1:52374621-52374640 None:intergenic 35.0%
! TGTTTGGAATGGCTTATTTG+AGG + chr1_1:52374657-52374676 None:intergenic 35.0%
TCAAATAAGCCATTCCAAAC+AGG - chr1_1:52374656-52374675 Msa0027770:CDS 35.0%
AGGTAGACATGGAAACTAAA+AGG + chr1_1:52374707-52374726 None:intergenic 35.0%
AACTATATGAGAGGTAGACA+TGG + chr1_1:52374718-52374737 None:intergenic 35.0%
GATGGAAAGAACTATATGAG+AGG + chr1_1:52374727-52374746 None:intergenic 35.0%
GCTATTCCATGTGCAATTAT+GGG + chr1_1:52374967-52374986 None:intergenic 35.0%
AGCTATTCCATGTGCAATTA+TGG + chr1_1:52374968-52374987 None:intergenic 35.0%
ATATGCAATTGAGCTCGAAA+TGG + chr1_1:52375073-52375092 None:intergenic 35.0%
! CGGAAGGTATAATTTAGACT+TGG - chr1_1:52375197-52375216 Msa0027770:CDS 35.0%
! AATTTAGACTTGGTTGTTCC+CGG - chr1_1:52375207-52375226 Msa0027770:CDS 35.0%
!!! TTGTTTCTGTCCCTTCTTTT+TGG - chr1_1:52375296-52375315 Msa0027770:CDS 35.0%
! GGCTGCAATTCCAATATTTT+AGG + chr1_1:52375410-52375429 None:intergenic 35.0%
CAATTAAAGAAAAAAGCCCG+CGG - chr1_1:52375531-52375550 Msa0027770:CDS 35.0%
GCTGCGTGTGTATTATTATT+AGG + chr1_1:52375597-52375616 None:intergenic 35.0%
TATTTGACTGAATTGGTTGC+TGG - chr1_1:52375846-52375865 Msa0027770:CDS 35.0%
! GGTTTGAAATGGGGTGTATA+AGG + chr1_1:52372645-52372664 None:intergenic 40.0%
!! TTGAGTGGGTTTTTGGATGA+GGG + chr1_1:52372675-52372694 None:intergenic 40.0%
!! TTTGAGTGGGTTTTTGGATG+AGG + chr1_1:52372676-52372695 None:intergenic 40.0%
!! GAGAGATTTGAGTGGGTTTT+TGG + chr1_1:52372682-52372701 None:intergenic 40.0%
TGTCTAGGAGAGATTTGAGT+GGG + chr1_1:52372689-52372708 None:intergenic 40.0%
TTGTCTAGGAGAGATTTGAG+TGG + chr1_1:52372690-52372709 None:intergenic 40.0%
! TCGATGATTTTGCGTTGTCT+AGG + chr1_1:52372704-52372723 None:intergenic 40.0%
!!! CATTTCTTGGGTTGTTTTGG+CGG + chr1_1:52372756-52372775 None:intergenic 40.0%
!! GAGCATTTCTTGGGTTGTTT+TGG + chr1_1:52372759-52372778 None:intergenic 40.0%
! CGAATGCTTTGAGCATTTCT+TGG + chr1_1:52372769-52372788 None:intergenic 40.0%
TTTGGGTAGGTTAGAGAATG+AGG - chr1_1:52373039-52373058 Msa0027770:intron 40.0%
TTGGGTAGGTTAGAGAATGA+GGG - chr1_1:52373040-52373059 Msa0027770:intron 40.0%
TCATGCTGTGCAATTTGAGT+TGG - chr1_1:52373093-52373112 Msa0027770:intron 40.0%
!! AGAGAATCTTCGGAAGTGTT+TGG - chr1_1:52373156-52373175 Msa0027770:intron 40.0%
!! TCGGAAGTGTTTGGAGATTA+AGG - chr1_1:52373165-52373184 Msa0027770:intron 40.0%
!! GACTTTTGAGGAAGATAGTG+AGG - chr1_1:52373192-52373211 Msa0027770:intron 40.0%
AGGAAGATAGTGAGGAGTTA+GGG - chr1_1:52373200-52373219 Msa0027770:intron 40.0%
ATAGTGAGGAGTTAGGGAAA+GGG - chr1_1:52373206-52373225 Msa0027770:intron 40.0%
GAAAGGGAATAGGGATTTAG+CGG - chr1_1:52373222-52373241 Msa0027770:intron 40.0%
TTTAGCGGAAGCTTATGTTG+CGG - chr1_1:52373237-52373256 Msa0027770:intron 40.0%
GAGATACATACGAAGCGATT+AGG - chr1_1:52373304-52373323 Msa0027770:intron 40.0%
! TGGGATTGTTTATAGTGGGA+TGG - chr1_1:52373366-52373385 Msa0027770:intron 40.0%
! GATTGTTTATAGTGGGATGG+AGG - chr1_1:52373369-52373388 Msa0027770:intron 40.0%
AGCTCTTGTGCTTGTATCAA+TGG - chr1_1:52373579-52373598 Msa0027770:intron 40.0%
GCTCTTGTGCTTGTATCAAT+GGG - chr1_1:52373580-52373599 Msa0027770:intron 40.0%
CTCTTGTGCTTGTATCAATG+GGG - chr1_1:52373581-52373600 Msa0027770:intron 40.0%
! GGAAGTGTATCTGCAAGAAT+AGG - chr1_1:52373829-52373848 Msa0027770:intron 40.0%
! GTTGTTGTTGCTTACAGGTA+AGG - chr1_1:52373855-52373874 Msa0027770:intron 40.0%
GAAGCAGGCTATTCCTTATT+TGG - chr1_1:52373879-52373898 Msa0027770:intron 40.0%
TCAGCAGCACTTTCCAAATA+AGG + chr1_1:52373895-52373914 None:intergenic 40.0%
!! ATTTGGAAAGTGCTGCTGAA+CGG - chr1_1:52373896-52373915 Msa0027770:intron 40.0%
!! AGCTTTGGTCCCAAACATTT+TGG - chr1_1:52373928-52373947 Msa0027770:intron 40.0%
AGAAACCTCCATGATATCCT+TGG + chr1_1:52374037-52374056 None:intergenic 40.0%
GATATCATGGAGGTTTCTCT+TGG - chr1_1:52374039-52374058 Msa0027770:intron 40.0%
AGGCTTATGGTGATATTGGA+AGG - chr1_1:52374106-52374125 Msa0027770:intron 40.0%
GAATAAGGACCTGTTTGGAA+TGG + chr1_1:52374668-52374687 None:intergenic 40.0%
AGCATGAATAAGGACCTGTT+TGG + chr1_1:52374673-52374692 None:intergenic 40.0%
GAGCACAGAAGAGAATATAG+TGG + chr1_1:52374797-52374816 None:intergenic 40.0%
! TCACCAAGAGAGTTCTGATT+TGG - chr1_1:52374815-52374834 Msa0027770:CDS 40.0%
ACACCAAATCAGAACTCTCT+TGG + chr1_1:52374821-52374840 None:intergenic 40.0%
TCAACGTAACATACTGTGAG+TGG - chr1_1:52375262-52375281 Msa0027770:CDS 40.0%
GAAACTCAATTGCAAGGGAA+TGG + chr1_1:52375431-52375450 None:intergenic 40.0%
CTGCTGAAACTCAATTGCAA+GGG + chr1_1:52375436-52375455 None:intergenic 40.0%
AGCAGCAAGTTATAGATGCT+TGG - chr1_1:52375451-52375470 Msa0027770:CDS 40.0%
GCAGCAAGTTATAGATGCTT+GGG - chr1_1:52375452-52375471 Msa0027770:CDS 40.0%
TGCAAATGAGGTTCCTATGA+AGG - chr1_1:52375560-52375579 Msa0027770:CDS 40.0%
!! TATGTCAGGTTGGGAGTTAT+TGG + chr1_1:52375622-52375641 None:intergenic 40.0%
ATGTAACGGTATGTCAGGTT+GGG + chr1_1:52375631-52375650 None:intergenic 40.0%
GATTGATGTAACGGTATGTC+AGG + chr1_1:52375636-52375655 None:intergenic 40.0%
TGCTGCAGGTGTACTATTAT+GGG + chr1_1:52375658-52375677 None:intergenic 40.0%
ATGCTGCAGGTGTACTATTA+TGG + chr1_1:52375659-52375678 None:intergenic 40.0%
AGGATGTCTGCTAAACTGTT+CGG + chr1_1:52375719-52375738 None:intergenic 40.0%
TTGATGAATGCCTATGGTAC+TGG - chr1_1:52375757-52375776 Msa0027770:CDS 40.0%
ACGAGCAAGATGAGAGAAGA+AGG + chr1_1:52372555-52372574 None:intergenic 45.0%
! GTTTGTTGGGGGTGAAAAGA+GGG + chr1_1:52372622-52372641 None:intergenic 45.0%
!! GGTGTATAAGGGTTTGTTGG+GGG + chr1_1:52372633-52372652 None:intergenic 45.0%
!! GGGTGTATAAGGGTTTGTTG+GGG + chr1_1:52372634-52372653 None:intergenic 45.0%
! GGGGTGTATAAGGGTTTGTT+GGG + chr1_1:52372635-52372654 None:intergenic 45.0%
TGGGGTGTATAAGGGTTTGT+TGG + chr1_1:52372636-52372655 None:intergenic 45.0%
! GGTGGACATGGTTTGAAATG+GGG + chr1_1:52372654-52372673 None:intergenic 45.0%
! GGGTGGACATGGTTTGAAAT+GGG + chr1_1:52372655-52372674 None:intergenic 45.0%
AGGGTGGACATGGTTTGAAA+TGG + chr1_1:52372656-52372675 None:intergenic 45.0%
! TTTTTGGATGAGGGTGGACA+TGG + chr1_1:52372666-52372685 None:intergenic 45.0%
GGTCTTAAGCTTGATCGTGA+AGG - chr1_1:52372845-52372864 Msa0027770:CDS 45.0%
TAAGCTTGATCGTGAAGGTG+AGG - chr1_1:52372850-52372869 Msa0027770:CDS 45.0%
!!! AGGCTAATAGGGTTTTGGGT+AGG - chr1_1:52373026-52373045 Msa0027770:intron 45.0%
AATTGCACAGCATGAAGCAC+AGG + chr1_1:52373088-52373107 None:intergenic 45.0%
GCTAATGTTAAGACGGCGAT+GGG - chr1_1:52373115-52373134 Msa0027770:intron 45.0%
CTAATGTTAAGACGGCGATG+GGG - chr1_1:52373116-52373135 Msa0027770:intron 45.0%
!! AAGAGGCGCTAGAGAATCTT+CGG - chr1_1:52373146-52373165 Msa0027770:intron 45.0%
GAGGAAGATAGTGAGGAGTT+AGG - chr1_1:52373199-52373218 Msa0027770:intron 45.0%
GATAGTGAGGAGTTAGGGAA+AGG - chr1_1:52373205-52373224 Msa0027770:intron 45.0%
AGGAGTTAGGGAAAGGGAAT+AGG - chr1_1:52373212-52373231 Msa0027770:intron 45.0%
GGAGTTAGGGAAAGGGAATA+GGG - chr1_1:52373213-52373232 Msa0027770:intron 45.0%
GGCGCTTCCGTATTGTTTAA+AGG - chr1_1:52373276-52373295 Msa0027770:intron 45.0%
CGCATGATAGGAAGCTACTT+GGG - chr1_1:52373347-52373366 Msa0027770:intron 45.0%
TGGGATGGAGGATCATGATA+AGG - chr1_1:52373381-52373400 Msa0027770:intron 45.0%
!! GGGGAAAGCGTTATGTAATC+AGG - chr1_1:52373600-52373619 Msa0027770:intron 45.0%
AAGAGAACAGATTACACCGG+TGG - chr1_1:52373678-52373697 Msa0027770:intron 45.0%
TATGCCTCAGAAACTTCCAC+CGG + chr1_1:52373697-52373716 None:intergenic 45.0%
!! GGAAGTTTCTGAGGCATACT+CGG - chr1_1:52373699-52373718 Msa0027770:intron 45.0%
TGCGATTTCGTTGCTGAAGA+GGG - chr1_1:52373762-52373781 Msa0027770:intron 45.0%
GTGTATCTGCAAGAATAGGG+TGG - chr1_1:52373833-52373852 Msa0027770:intron 45.0%
GAACGGTTGAAAGAGAGCTT+TGG - chr1_1:52373913-52373932 Msa0027770:intron 45.0%
!!! GGTCCCAAACATTTTGGAGT+TGG - chr1_1:52373934-52373953 Msa0027770:intron 45.0%
TTTACGAGAACCTCTGAACC+GGG + chr1_1:52375228-52375247 None:intergenic 45.0%
CTTTACGAGAACCTCTGAAC+CGG + chr1_1:52375229-52375248 None:intergenic 45.0%
GCTGCTGAAACTCAATTGCA+AGG + chr1_1:52375437-52375456 None:intergenic 45.0%
ATAGATGCTTGGGAAAGCCA+TGG - chr1_1:52375462-52375481 Msa0027770:CDS 45.0%
GGAAAGTGAAGAGCCTTCAT+AGG + chr1_1:52375576-52375595 None:intergenic 45.0%
GATGTAACGGTATGTCAGGT+TGG + chr1_1:52375632-52375651 None:intergenic 45.0%
TAAACTGTTCGGGATTGACG+TGG + chr1_1:52375708-52375727 None:intergenic 45.0%
GGATGTCTGCTAAACTGTTC+GGG + chr1_1:52375718-52375737 None:intergenic 45.0%
!! GGTTTGTTGGGGGTGAAAAG+AGG + chr1_1:52372623-52372642 None:intergenic 50.0%
!! AGTGGGTTTTTGGATGAGGG+TGG + chr1_1:52372672-52372691 None:intergenic 50.0%
! GCTCAAAGCATTCGGTGAGA+TGG - chr1_1:52372775-52372794 Msa0027770:CDS 50.0%
GGCTAATGTTAAGACGGCGA+TGG - chr1_1:52373114-52373133 Msa0027770:intron 50.0%
CTGTTGAGGTTGCGCATGAT+AGG - chr1_1:52373335-52373354 Msa0027770:intron 50.0%
GCGCATGATAGGAAGCTACT+TGG - chr1_1:52373346-52373365 Msa0027770:intron 50.0%
GGAGGATCATGATAAGGCGT+TGG - chr1_1:52373387-52373406 Msa0027770:intron 50.0%
!! GGCGTTGGAGCAGAATGTTT+TGG - chr1_1:52373402-52373421 Msa0027770:intron 50.0%
GGGAGATACGATGAAGCTGT+TGG - chr1_1:52373508-52373527 Msa0027770:intron 50.0%
TACACCGGTGGAAGTTTCTG+AGG - chr1_1:52373690-52373709 Msa0027770:intron 50.0%
CTGCGATTTCGTTGCTGAAG+AGG - chr1_1:52373761-52373780 Msa0027770:intron 50.0%
! GGGTGGTTGTTGTTGCTTAC+AGG - chr1_1:52373850-52373869 Msa0027770:intron 50.0%
GCTTACAGGTAAGGTGAAGC+AGG - chr1_1:52373864-52373883 Msa0027770:intron 50.0%
! GGGGGCAGCATATTTAGAGT+TGG - chr1_1:52373975-52373994 Msa0027770:intron 50.0%
TGCGGTAGCCAAGGATATCA+TGG - chr1_1:52374026-52374045 Msa0027770:intron 50.0%
GGTAGCCAAGGATATCATGG+AGG - chr1_1:52374029-52374048 Msa0027770:intron 50.0%
GTGTGGGATTCAGATTCCAG+TGG - chr1_1:52374263-52374282 Msa0027770:intron 50.0%
CCATGTGCAATTATGGGCTC+AGG + chr1_1:52374961-52374980 None:intergenic 50.0%
CCTGAGCCCATAATTGCACA+TGG - chr1_1:52374958-52374977 Msa0027770:CDS 50.0%
CGGTTCAGAGGTTCTCGTAA+AGG - chr1_1:52375227-52375246 Msa0027770:CDS 50.0%
CTTCTTCTGCACTTGCTCCA+TGG + chr1_1:52375482-52375501 None:intergenic 50.0%
!! TGTGTCAGGTTGGGAGTTAC+TGG + chr1_1:52375682-52375701 None:intergenic 50.0%
! TTGATGGATGCATCGCGGAG+AGG + chr1_1:52372599-52372618 None:intergenic 55.0%
!! GAGGGTTGATGGATGCATCG+CGG + chr1_1:52372604-52372623 None:intergenic 55.0%
GGGGGTGAAAAGAGGGTTGA+TGG + chr1_1:52372615-52372634 None:intergenic 55.0%
ATGTTAAGACGGCGATGGGG+AGG - chr1_1:52373119-52373138 Msa0027770:intron 55.0%
! AACATCTGCGCTGCTGACTG+AGG + chr1_1:52374006-52374025 None:intergenic 55.0%
GTCAGCAGCGCAGATGTTTG+CGG - chr1_1:52374008-52374027 Msa0027770:intron 55.0%
GCAGATGTTTGCGGTAGCCA+AGG - chr1_1:52374017-52374036 Msa0027770:intron 55.0%
CTTGGTTGTTCCCGGTTCAG+AGG - chr1_1:52375215-52375234 Msa0027770:CDS 55.0%
CTCATTTGCAGAGACACCGC+GGG + chr1_1:52375550-52375569 None:intergenic 55.0%
CCTCATTTGCAGAGACACCG+CGG + chr1_1:52375551-52375570 None:intergenic 55.0%
TGGGAGTTACTGGATGCTGC+AGG + chr1_1:52375672-52375691 None:intergenic 55.0%
ACTGTTCGGGATTGACGTGG+CGG + chr1_1:52375705-52375724 None:intergenic 55.0%
TCGCGGAGAGGAGAGAGAGA+AGG + chr1_1:52372587-52372606 None:intergenic 60.0%
GCTCCCACAAGAGCAGCACT+CGG - chr1_1:52373804-52373823 Msa0027770:intron 60.0%
! CCTCCGAGTGCTGCTCTTGT+GGG + chr1_1:52373810-52373829 None:intergenic 60.0%
CCACAAGAGCAGCACTCGGA+GGG - chr1_1:52373808-52373827 Msa0027770:intron 60.0%
CCGCGGTGTCTCTGCAAATG+AGG - chr1_1:52375548-52375567 Msa0027770:CDS 60.0%
ACGTGGCGGTGTGTCAGGTT+GGG + chr1_1:52375691-52375710 None:intergenic 60.0%
GATTGACGTGGCGGTGTGTC+AGG + chr1_1:52375696-52375715 None:intergenic 60.0%
GGCGATGGGGAGGAGAGAAG+AGG - chr1_1:52373129-52373148 Msa0027770:intron 65.0%
CCCACAAGAGCAGCACTCGG+AGG - chr1_1:52373807-52373826 Msa0027770:intron 65.0%
! CCCTCCGAGTGCTGCTCTTG+TGG + chr1_1:52373811-52373830 None:intergenic 65.0%
GACGTGGCGGTGTGTCAGGT+TGG + chr1_1:52375692-52375711 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 52372527 52375939 52372527 ID=Msa0027770;Name=Msa0027770
chr1_1 mRNA 52372527 52375939 52372527 ID=Msa0027770-mRNA-1;Parent=Msa0027770;Name=Msa0027770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|211|633
chr1_1 exon 52372527 52373038 52372527 ID=Msa0027770-mRNA-1:exon:15351;Parent=Msa0027770-mRNA-1
chr1_1 exon 52374339 52375939 52374339 ID=Msa0027770-mRNA-1:exon:15350;Parent=Msa0027770-mRNA-1
chr1_1 CDS 52374339 52375939 52374339 ID=Msa0027770-mRNA-1:cds;Parent=Msa0027770-mRNA-1
chr1_1 CDS 52372738 52373038 52372738 ID=Msa0027770-mRNA-1:cds;Parent=Msa0027770-mRNA-1
chr1_1 three_prime_UTR 52372527 52372737 52372527 ID=Msa0027770-mRNA-1:three_prime_utr;Parent=Msa0027770-mRNA-1
Gene Sequence

>Msa0027770

ATGAGAAAACTCTTGAATTCTCTCACCTTCTTCTCTCATCTTGCTCGTCGAGCTTCACCTTCTCTCTCTCCTCTCCGCGATGCATCCATCAACCCTCTTTTCACCCCCAACAAACCCTTATACACCCCATTTCAAACCATGTCCACCCTCATCCAAAAACCCACTCAAATCTCTCCTAGACAACGCAAAATCATCGAAAAATCGCATCTTGAAGAAGCTTTTGAGTCCGCCAAAACAACCCAAGAAATGCTCAAAGCATTCGGTGAGATGGAAATTTCATTCAATGAAAAGGAGCTTGGTTTAGCTGCATTGAAAATTGGTCTTAAGCTTGATCGTGAAGGTGAGGATCCTGAAAAAGCTCTTGAATTTGCTAATAGAGCTTTGAAAGTGTTTGAAAATGAAAAGAAAGATTCTTTTCCTTATGCTATGAGTTTGCAGTTAATGGGTAGTCTTAATTATGGTTTAAATAGGTTTAGTGATAGTTTAGGGTATCTTAATAAGGCTAATAGGGTTTTGGGTAGGTTAGAGAATGAGGGTGTTTGTGTTGATGATGTTAGGCCTGTGCTTCATGCTGTGCAATTTGAGTTGGCTAATGTTAAGACGGCGATGGGGAGGAGAGAAGAGGCGCTAGAGAATCTTCGGAAGTGTTTGGAGATTAAGGAGATGACTTTTGAGGAAGATAGTGAGGAGTTAGGGAAAGGGAATAGGGATTTAGCGGAAGCTTATGTTGCGGTTTTGAATTTTAAGGAGGCGCTTCCGTATTGTTTAAAGGCGTTAGAGATACATACGAAGCGATTAGGGATGAATTCTGTTGAGGTTGCGCATGATAGGAAGCTACTTGGGATTGTTTATAGTGGGATGGAGGATCATGATAAGGCGTTGGAGCAGAATGTTTTGGCGCAGAAGATTTTGAAGAATTGGAATCTCAGTTCGGATTTGTTGCGCGCTGAAGTTGATGCTGCGAATATGATGATTGCTTTGGGGAGATACGATGAAGCTGTTGGTACTTTGAAGAACGTTGTGAATCAGACTGAGAAAGATAGTGAGACTCGAGCTCTTGTGCTTGTATCAATGGGGAAAGCGTTATGTAATCAGGAAAAGTTTGCAGACTGTAAAAGGTGTTTAGAGATTTCTATTGGGATTCTTGATAAAAGAGAACAGATTACACCGGTGGAAGTTTCTGAGGCATACTCGGAGATATCCATGCTATATGAAACTATGAACGAGTTCGAAACTGCGATTTCGTTGCTGAAGAGGGCACTAGCTTTGCTCGAGAAGCTCCCACAAGAGCAGCACTCGGAGGGAAGTGTATCTGCAAGAATAGGGTGGTTGTTGTTGCTTACAGGTAAGGTGAAGCAGGCTATTCCTTATTTGGAAAGTGCTGCTGAACGGTTGAAAGAGAGCTTTGGTCCCAAACATTTTGGAGTTGGTTATATCTACAACAATTTGGGGGCAGCATATTTAGAGTTGGATAGACCTCAGTCAGCAGCGCAGATGTTTGCGGTAGCCAAGGATATCATGGAGGTTTCTCTTGGTCCACATCATGCAGATACAATTGAAGCATGTCAGAATCTTTCAAAGGCTTATGGTGATATTGGAAGCCATTCCCTTGCAATTGAGTTTCAGCAGCAAGTTATAGATGCTTGGGAAAGCCATGGAGCAAGTGCAGAAGAAGAACTAAGAGAAGCTCAGCGACTACTCGAACAATTAAAGAAAAAAGCCCGCGGTGTCTCTGCAAATGAGGTTCCTATGAAGGCTCTTCACTTTCCTAATAATAATACACACGCAGCATCCAATAACTCCCAACCTGACATACCGTTACATCAATCCCATAATAGTACACCTGCAGCATCCAGTAACTCCCAACCTGACACACCGCCACGTCAATCCCGAACAGTTTAG

Protein sequence

>Msa0027770

MRKLLNSLTFFSHLARRASPSLSPLRDASINPLFTPNKPLYTPFQTMSTLIQKPTQISPRQRKIIEKSHLEEAFESAKTTQEMLKAFGEMEISFNEKELGLAALKIGLKLDREGEDPEKALEFANRALKVFENEKKDSFPYAMSLQLMGSLNYGLNRFSDSLGYLNKANRVLGRLENEGVCVDDVRPVLHAVQFELANVKTAMGRREEALENLRKCLEIKEMTFEEDSEELGKGNRDLAEAYVAVLNFKEALPYCLKALEIHTKRLGMNSVEVAHDRKLLGIVYSGMEDHDKALEQNVLAQKILKNWNLSSDLLRAEVDAANMMIALGRYDEAVGTLKNVVNQTEKDSETRALVLVSMGKALCNQEKFADCKRCLEISIGILDKREQITPVEVSEAYSEISMLYETMNEFETAISLLKRALALLEKLPQEQHSEGSVSARIGWLLLLTGKVKQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQMFAVAKDIMEVSLGPHHADTIEACQNLSKAYGDIGSHSLAIEFQQQVIDAWESHGASAEEELREAQRLLEQLKKKARGVSANEVPMKALHFPNNNTHAASNNSQPDIPLHQSHNSTPAASSNSQPDTPPRQSRTV*