AlfalfaGEDB | Msa0342140

M. sativa cultivar zhongmu-4 / Msa0342140

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010479 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0098727 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0342140	XP_013464960.1	94.081	642	38	0	6	647	240	881	0.0	1239

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0342140	sp\|Q9XIN0\|LHW_ARATH	51.852	405	134	10	247	644	293	643	1.03e-114	360

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0342140	0.806979	6.322680e-50	-8.615850e-47
Msa0078650	Msa0342140	0.811655	6.282042e-51	-8.615850e-47
Msa0087940	Msa0342140	0.800764	1.236678e-48	-8.615850e-47
Msa0126370	Msa0342140	0.806074	9.814927e-50	-8.615850e-47
Msa0157290	Msa0342140	0.807446	5.035248e-50	-8.615850e-47
Msa0259120	Msa0342140	0.975331	9.313768e-140	-8.615850e-47
Msa0259240	Msa0342140	0.849106	4.001162e-60	-8.615850e-47
Msa0259290	Msa0342140	0.981861	1.243148e-153	-8.615850e-47
Msa0302000	Msa0342140	0.816615	5.047211e-52	-8.615850e-47
Msa0322690	Msa0342140	0.804227	2.389675e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0342140	MtrunA17_Chr2g0322001	94.081	642	38	0	6	647	240	881	0.0	1239
Msa0342140	MtrunA17_Chr4g0025571	61.111	684	212	18	4	645	248	919	0.0	729
Msa0342140	MtrunA17_Chr1g0188861	57.282	206	83	1	432	632	555	760	9.26e-68	236
Msa0342140	MtrunA17_Chr7g0261061	55.208	192	82	2	434	621	466	657	6.89e-57	204
Msa0342140	MtrunA17_Chr1g0184231	51.546	194	88	3	434	621	466	659	2.42e-54	197
Msa0342140	MtrunA17_Chr7g0239641	35.179	307	165	9	315	612	385	666	2.94e-43	165

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0342140	AT2G27230.2	51.852	405	134	10	247	644	293	643	1.05e-115	360
Msa0342140	AT2G27230.1	51.852	405	134	10	247	644	293	643	1.05e-115	360
Msa0342140	AT1G64625.3	52.113	213	85	3	413	625	302	497	1.59e-62	216
Msa0342140	AT1G64625.2	52.113	213	85	3	413	625	316	511	2.99e-62	216
Msa0342140	AT1G64625.1	52.113	213	85	3	413	625	326	521	3.36e-62	216
Msa0342140	AT1G06150.1	54.839	186	82	1	438	621	543	728	7.85e-60	214
Msa0342140	AT1G06150.2	54.255	188	82	2	438	621	543	730	4.13e-58	209
Msa0342140	AT2G31280.1	53.763	186	77	2	438	621	535	713	3.88e-56	203
Msa0342140	AT2G31280.3	49.754	203	76	2	438	621	535	730	2.68e-54	198
Msa0342140	AT2G31280.2	48.223	197	71	2	438	610	507	696	1.28e-48	182

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Find 237 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAACATGTCAGAAC+AGG	0.404985	2_4:-64067259	Msa0342140:CDS
AAACAGGGACGTGACGAGGA+TGG	0.609914	2_4:-64065613	Msa0342140:CDS
AAAGGAAACATGTCAGAACA+GGG	0.651075	2_4:-64067258	Msa0342140:CDS
AAATAGCTTCATACCTCAGG+TGG	0.577005	2_4:+64068971	None:intergenic
AAATATGTAGATTATTAGTA+AGG	0.476655	2_4:-64066284	Msa0342140:intron
AAATTAGCTGCAGATACTTT+CGG	0.415204	2_4:+64067650	None:intergenic
AAATTTCTCCGCTTAAAGGA+TGG	0.529927	2_4:+64068056	None:intergenic
AACAGACCACCTATTAGATG+CGG	0.674702	2_4:-64067162	Msa0342140:CDS
AACAGGTCATCACCACCTGA+TGG	0.575030	2_4:+64067380	None:intergenic
AACCAACTCCCGTCCCCGTT+CGG	0.449815	2_4:+64069271	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAATCTAGTCATTGTTGC+AGG	-	chr2_4:64065016-64065035	Msa0342140:three_prime_UTR	30.0%
GAAATGCTTAGAACAAAAAG+TGG	+	chr2_4:64065418-64065437	None:intergenic	30.0%
TAACAAAGAAAAGGACTTAC+AGG	+	chr2_4:64065538-64065557	None:intergenic	30.0%
AAACCATTAATAGTTCGGTT+CGG	-	chr2_4:64065671-64065690	Msa0342140:intron	30.0%
AGAATAGTCTTTGGATAGAA+GGG	+	chr2_4:64065950-64065969	None:intergenic	30.0%
TTACAAATTTCTCCGCTTAA+AGG	+	chr2_4:64066136-64066155	None:intergenic	30.0%
CAGGTTTGAATCAAAATTTG+AGG	+	chr2_4:64066194-64066213	None:intergenic	30.0%
AGCAAAATTTATCTGTAGCT+GGG	-	chr2_4:64066323-64066342	Msa0342140:intron	30.0%
GAACTTGAAACATTAACACA+AGG	+	chr2_4:64066367-64066386	None:intergenic	30.0%
TGGAATGAATAATCTTCTGA+GGG	-	chr2_4:64066486-64066505	Msa0342140:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	64064827	64069380	64064827	ID=Msa0342140;Name=Msa0342140
chr2_4	mRNA	64064827	64069380	64064827	ID=Msa0342140-mRNA-1;Parent=Msa0342140;Name=Msa0342140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=598\|1\|1\|1\|1\|0.88\|9\|673\|647
chr2_4	exon	64064827	64065637	64064827	ID=Msa0342140-mRNA-1:exon:20580;Parent=Msa0342140-mRNA-1
chr2_4	exon	64065943	64066068	64065943	ID=Msa0342140-mRNA-1:exon:20579;Parent=Msa0342140-mRNA-1
chr2_4	exon	64066156	64066296	64066156	ID=Msa0342140-mRNA-1:exon:20578;Parent=Msa0342140-mRNA-1
chr2_4	exon	64066490	64066591	64066490	ID=Msa0342140-mRNA-1:exon:20577;Parent=Msa0342140-mRNA-1
chr2_4	exon	64066698	64068330	64066698	ID=Msa0342140-mRNA-1:exon:20576;Parent=Msa0342140-mRNA-1
chr2_4	exon	64068670	64068729	64068670	ID=Msa0342140-mRNA-1:exon:20575;Parent=Msa0342140-mRNA-1
chr2_4	exon	64068814	64068855	64068814	ID=Msa0342140-mRNA-1:exon:20574;Parent=Msa0342140-mRNA-1
chr2_4	exon	64068985	64069066	64068985	ID=Msa0342140-mRNA-1:exon:20573;Parent=Msa0342140-mRNA-1
chr2_4	exon	64069163	64069380	64069163	ID=Msa0342140-mRNA-1:exon:20572;Parent=Msa0342140-mRNA-1
chr2_4	five_prime_UTR	64069163	64069380	64069163	ID=Msa0342140-mRNA-1:five_prime_utr;Parent=Msa0342140-mRNA-1
chr2_4	five_prime_UTR	64068985	64069066	64068985	ID=Msa0342140-mRNA-1:five_prime_utr;Parent=Msa0342140-mRNA-1
chr2_4	five_prime_UTR	64068814	64068855	64068814	ID=Msa0342140-mRNA-1:five_prime_utr;Parent=Msa0342140-mRNA-1
chr2_4	five_prime_UTR	64068670	64068729	64068670	ID=Msa0342140-mRNA-1:five_prime_utr;Parent=Msa0342140-mRNA-1
chr2_4	five_prime_UTR	64068135	64068330	64068135	ID=Msa0342140-mRNA-1:five_prime_utr;Parent=Msa0342140-mRNA-1
chr2_4	CDS	64066698	64068134	64066698	ID=Msa0342140-mRNA-1:cds;Parent=Msa0342140-mRNA-1
chr2_4	CDS	64066490	64066591	64066490	ID=Msa0342140-mRNA-1:cds;Parent=Msa0342140-mRNA-1
chr2_4	CDS	64066156	64066296	64066156	ID=Msa0342140-mRNA-1:cds;Parent=Msa0342140-mRNA-1
chr2_4	CDS	64065943	64066068	64065943	ID=Msa0342140-mRNA-1:cds;Parent=Msa0342140-mRNA-1
chr2_4	CDS	64065500	64065637	64065500	ID=Msa0342140-mRNA-1:cds;Parent=Msa0342140-mRNA-1
chr2_4	three_prime_UTR	64064827	64065499	64064827	ID=Msa0342140-mRNA-1:three_prime_utr;Parent=Msa0342140-mRNA-1

Gene Sequence

>Msa0342140

ATGGCTCTAATCACCAGTTATTCATCTCATGCTGCGAAGCCTAATGTTCAAACACTCCATCCTTTAAGCGGAGAAATTTGTAATTTTCAGGGTAGAGTTGTGGAGGCTAGAGTAATACCCTCAAATTTTGATTCAAACCTGCAAAAGCATTCAGTTCCTTATAATGCAAGATCTGAATTCAACAACTTTGCCGGTTCTGCGCCGTTTGGTCAATCCGGTCAAAGTGATTGTAGCCTAAAATATATGGAGCAGCAAAATTTATCTGTAGCTGGGAGTCAAGATCATGTTAACCCTTGTGTTAATGTTTCAAGTTCCTTAAACATTTCTCAACTGAAAACAGACAGAAGCCTCAGCTTCGGCCATAATCTGAGTTCTAGCAGTACTTCATTACTTAGAGGAATCCCGGTACATGGTGGAATGAATAATCTTCTGAGGGCAAATCTGATTACTAGCTCAAAATCACCGAAAGTATCTGCAGCTAATTTATCCGGAGCACAAGTTGGGAATGAACTTCAAAATAAAGATTTAACCTTTAAGTTTGCTTCAACAGATCAAAAGATAAACTATGACATGCTTCAGGCTCATAGCATCCCCTCTTTTAATCCCGAGGAGCATGTGCTGAATAGTGGTCATATCCCAGGTTTTGTCCGCGATTGCTTTCAAAAAGATGGTACCATTCAATCTATGATGACAGCGAATCCTAAACATGAAGAAGCTTGTGCTCAACAACCTCCATCAGGTGGTGATGACCTGTTTGATATTTTAGGTGTGGATTTTAAAAACAAACTTCTGAAAGGCCACTGGAATGAACTGTTTGCTGATGAATCAGATGGCAATGCAGAAAATAAGGTTAAAAAGGAAACATGTCAGAACAGGGAGGCTACGGCTTCTGATTGTTATTACTCAGTTAATGAATCAATGTTGGACAGTGGCATTTTTTCTGGGATGTCAACAGACCACCTATTAGATGCGGTGGTCTCAACGGCCAAACCGCCTTTGAAACAAAATTCCGATGACATATCTTGCAGAACAACATTGACGGGGAATAGTACCACCTCTATTCCCTCTCGTGTCTGTAACCAGGTTATGTCCAGTAATTTTGAAGGGGGATTGTTAGGTTTTTCGAAGAATGGAGGTAAAATGGGTGCTGTAGAAACTAGTTCTCTAAGGTCTGGTTGTAGCAAGGATGATGGTGGAAAATGCTATCAAACTACAACTGTATGTGGCTCTCAACTTAGTTCGTGGTTGGAGAATGGTAGCAATATGAAGCATGAAAATAGTGTTTCAACTGGATACTCTAAACGCCCGGATGAAGTTTGCAAATCTAATCGCAAAAGGCTTAAACCAGGAGAGAATCCCAGGCCTCGACCTAAAGATCGCCAAATGATTCAAGATCGTGTCAAAGAGTTGCGAGAAATTGTTCCAAATGGAGCAAAATGTAGCATAGATGCACTGCTGGAACGGACCATTAAGCATATGCTTTTCTTCCAAAGTGTGACAAAGCATGCCGACAAGCTGAAACAAAACGGGGAGTCTAAGATTATTAGTAAGGAAGGTGGGCTGGTTTTGAAAGACAACTTCGAGGGAGGGGCTACATGGGCATATGAGGTTGGATCCCAATCAATGGTCTGTCCTATTATAGTTGAAGATTTGAATACTCCTCGTCAGATGCTAATCGAGATGCTCTGCGAGGAACGGGGTTTCTTTCTGGAAATAGCTGACTTAATAAGAGGATTAGGCTTGACCATCTTGAAGGGGGTAATGGAATCTCACAATGACAAAATCTGGGCACGTTTCATTGTTGAGGCAAACAGGGACGTGACGAGGATGGAAATATTTATGTCACTCGTTCGTCTTCTGGAGCAAACGATGAAGGGTAATGCATCATCATCCAATGCAGTTGATACCATGTTGCGTTATAACTCTTTACCCCAGAAGGCGTAA

Protein sequence

>Msa0342140

MALITSYSSHAAKPNVQTLHPLSGEICNFQGRVVEARVIPSNFDSNLQKHSVPYNARSEFNNFAGSAPFGQSGQSDCSLKYMEQQNLSVAGSQDHVNPCVNVSSSLNISQLKTDRSLSFGHNLSSSSTSLLRGIPVHGGMNNLLRANLITSSKSPKVSAANLSGAQVGNELQNKDLTFKFASTDQKINYDMLQAHSIPSFNPEEHVLNSGHIPGFVRDCFQKDGTIQSMMTANPKHEEACAQQPPSGGDDLFDILGVDFKNKLLKGHWNELFADESDGNAENKVKKETCQNREATASDCYYSVNESMLDSGIFSGMSTDHLLDAVVSTAKPPLKQNSDDISCRTTLTGNSTTSIPSRVCNQVMSSNFEGGLLGFSKNGGKMGAVETSSLRSGCSKDDGGKCYQTTTVCGSQLSSWLENGSNMKHENSVSTGYSKRPDEVCKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFFQSVTKHADKLKQNGESKIISKEGGLVLKDNFEGGATWAYEVGSQSMVCPIIVEDLNTPRQMLIEMLCEERGFFLEIADLIRGLGLTILKGVMESHNDKIWARFIVEANRDVTRMEIFMSLVRLLEQTMKGNASSSNAVDTMLRYNSLPQKA*