Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0336030 | GAU22363.1 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 1.81e-49 | 172 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003700 | Msa0336030 | 0.826109 | 3.248731e-54 | -8.615850e-47 |
Msa0017510 | Msa0336030 | 0.814493 | 1.498412e-51 | -8.615850e-47 |
Msa0027230 | Msa0336030 | 0.810704 | 1.009719e-50 | -8.615850e-47 |
Msa0031340 | Msa0336030 | 0.804679 | 1.924436e-49 | -8.615850e-47 |
Msa0069330 | Msa0336030 | 0.834817 | 2.406318e-56 | -8.615850e-47 |
Msa0077200 | Msa0336030 | 0.800762 | 1.237873e-48 | -8.615850e-47 |
Msa0078650 | Msa0336030 | 0.860172 | 2.485609e-63 | -8.615850e-47 |
Msa0079920 | Msa0336030 | 0.800774 | 1.231096e-48 | -8.615850e-47 |
Msa0094470 | Msa0336030 | 0.800450 | 1.433236e-48 | -8.615850e-47 |
Msa0094850 | Msa0336030 | 0.800322 | 1.521994e-48 | -8.615850e-47 |
Msa0104550 | Msa0336030 | 0.830334 | 3.114317e-55 | -8.615850e-47 |
Msa0110970 | Msa0336030 | 0.824214 | 9.112999e-54 | -8.615850e-47 |
Msa0114920 | Msa0336030 | 0.801971 | 6.998088e-49 | -8.615850e-47 |
Msa0115090 | Msa0336030 | 0.809713 | 1.651882e-50 | -8.615850e-47 |
Msa0118570 | Msa0336030 | 0.823737 | 1.178831e-53 | -8.615850e-47 |
Msa0122970 | Msa0336030 | 0.805298 | 1.428114e-49 | -8.615850e-47 |
Msa0125540 | Msa0336030 | 0.807757 | 4.324640e-50 | -8.615850e-47 |
Msa0126370 | Msa0336030 | 0.854925 | 8.897339e-62 | -8.615850e-47 |
Msa0134610 | Msa0336030 | 0.823730 | 1.183394e-53 | -8.615850e-47 |
Msa0142480 | Msa0336030 | 0.821169 | 4.658849e-53 | -8.615850e-47 |
Msa0142950 | Msa0336030 | 0.813819 | 2.109888e-51 | -8.615850e-47 |
Msa0144360 | Msa0336030 | 0.801615 | 8.280872e-49 | -8.615850e-47 |
Msa0146260 | Msa0336030 | 0.832525 | 8.994758e-56 | -8.615850e-47 |
Msa0146280 | Msa0336030 | 0.819476 | 1.138209e-52 | -8.615850e-47 |
Msa0150570 | Msa0336030 | 0.815781 | 7.754028e-52 | -8.615850e-47 |
Msa0152400 | Msa0336030 | 0.815191 | 1.049086e-51 | -8.615850e-47 |
Msa0157290 | Msa0336030 | 0.815158 | 1.066959e-51 | -8.615850e-47 |
Msa0171290 | Msa0336030 | 0.822069 | 2.885702e-53 | -8.615850e-47 |
Msa0173890 | Msa0336030 | 0.801671 | 8.064716e-49 | -8.615850e-47 |
Msa0195630 | Msa0336030 | 0.825969 | 3.507570e-54 | -8.615850e-47 |
Msa0197930 | Msa0336030 | 0.831594 | 1.528110e-55 | -8.615850e-47 |
Msa0205850 | Msa0336030 | 0.804658 | 1.943927e-49 | -8.615850e-47 |
Msa0206840 | Msa0336030 | 0.812052 | 5.147424e-51 | -8.615850e-47 |
Msa0212990 | Msa0336030 | 0.802674 | 5.015659e-49 | -8.615850e-47 |
Msa0216240 | Msa0336030 | 0.804294 | 2.314167e-49 | -8.615850e-47 |
Msa0237410 | Msa0336030 | 0.824882 | 6.342966e-54 | -8.615850e-47 |
Msa0243100 | Msa0336030 | 0.801705 | 7.937760e-49 | -8.615850e-47 |
Msa0259290 | Msa0336030 | 0.820707 | 5.949226e-53 | -8.615850e-47 |
Msa0271530 | Msa0336030 | 0.800641 | 1.310082e-48 | -8.615850e-47 |
Msa0287650 | Msa0336030 | 0.821276 | 4.399795e-53 | -8.615850e-47 |
Msa0300690 | Msa0336030 | 0.803027 | 4.239763e-49 | -8.615850e-47 |
Msa0307850 | Msa0336030 | 0.812888 | 3.379895e-51 | -8.615850e-47 |
Msa0311700 | Msa0336030 | 0.808586 | 2.879286e-50 | -8.615850e-47 |
Msa0316810 | Msa0336030 | 0.801976 | 6.984110e-49 | -8.615850e-47 |
Msa0330340 | Msa0336030 | 0.804904 | 1.726713e-49 | -8.615850e-47 |
Msa0333920 | Msa0336030 | 0.813065 | 3.090422e-51 | -8.615850e-47 |
Msa0334040 | Msa0336030 | 0.806804 | 6.886166e-50 | -8.615850e-47 |
Msa0334360 | Msa0336030 | 0.805722 | 1.163473e-49 | -8.615850e-47 |
Msa0336030 | Msa0342140 | 0.809026 | 2.318412e-50 | -8.615850e-47 |
Msa0336030 | Msa0369850 | 0.826174 | 3.134427e-54 | -8.615850e-47 |
Msa0336030 | Msa0376280 | 0.800876 | 1.173468e-48 | -8.615850e-47 |
Msa0336030 | Msa0376350 | 0.812171 | 4.848730e-51 | -8.615850e-47 |
Msa0336030 | Msa0403850 | 0.819108 | 1.381039e-52 | -8.615850e-47 |
Msa0336030 | Msa0410500 | 0.856190 | 3.803544e-62 | -8.615850e-47 |
Msa0336030 | Msa0410650 | 0.828051 | 1.114522e-54 | -8.615850e-47 |
Msa0336030 | Msa0417880 | 0.826145 | 3.186084e-54 | -8.615850e-47 |
Msa0336030 | Msa0423900 | 0.817919 | 2.568051e-52 | -8.615850e-47 |
Msa0336030 | Msa0424790 | 0.804054 | 2.596318e-49 | -8.615850e-47 |
Msa0336030 | Msa0467430 | 0.821633 | 3.639117e-53 | -8.615850e-47 |
Msa0336030 | Msa0474950 | 0.808506 | 2.995727e-50 | -8.615850e-47 |
Msa0336030 | Msa0475790 | 0.850086 | 2.130919e-60 | -8.615850e-47 |
Msa0336030 | Msa0481530 | 0.804331 | 2.273691e-49 | -8.615850e-47 |
Msa0336030 | Msa0488560 | 0.805823 | 1.108328e-49 | -8.615850e-47 |
Msa0336030 | Msa0507680 | 0.819023 | 1.443614e-52 | -8.615850e-47 |
Msa0336030 | Msa0509610 | 0.808790 | 2.604536e-50 | -8.615850e-47 |
Msa0336030 | Msa0524500 | 0.813414 | 2.591390e-51 | -8.615850e-47 |
Msa0336030 | Msa0546680 | 0.802333 | 5.895917e-49 | -8.615850e-47 |
Msa0336030 | Msa0556060 | 0.808064 | 3.720307e-50 | -8.615850e-47 |
Msa0336030 | Msa0557070 | 0.803494 | 3.393526e-49 | -8.615850e-47 |
Msa0336030 | Msa0557320 | 0.809040 | 2.303220e-50 | -8.615850e-47 |
Msa0336030 | Msa0562220 | 0.804442 | 2.156294e-49 | -8.615850e-47 |
Msa0336030 | Msa0574890 | 0.801163 | 1.024924e-48 | -8.615850e-47 |
Msa0336030 | Msa0576680 | 0.802391 | 5.735673e-49 | -8.615850e-47 |
Msa0336030 | Msa0585560 | 0.801936 | 7.116245e-49 | -8.615850e-47 |
Msa0336030 | Msa0601750 | 0.805338 | 1.401056e-49 | -8.615850e-47 |
Msa0336030 | Msa0620230 | 0.807012 | 6.221464e-50 | -8.615850e-47 |
Msa0336030 | Msa0625720 | 0.800918 | 1.150222e-48 | -8.615850e-47 |
Msa0336030 | Msa0641190 | 0.803632 | 3.177919e-49 | -8.615850e-47 |
Msa0336030 | Msa0642720 | 0.816293 | 5.958425e-52 | -8.615850e-47 |
Msa0336030 | Msa0655560 | 0.811972 | 5.358478e-51 | -8.615850e-47 |
Msa0336030 | Msa0657750 | 0.813853 | 2.074110e-51 | -8.615850e-47 |
Msa0336030 | Msa0682330 | 0.804764 | 1.846621e-49 | -8.615850e-47 |
Msa0336030 | Msa0684500 | 0.813798 | 2.132279e-51 | -8.615850e-47 |
Msa0336030 | Msa0734960 | 0.812747 | 3.628400e-51 | -8.615850e-47 |
Msa0336030 | Msa0743800 | 0.813012 | 3.174129e-51 | -8.615850e-47 |
Msa0336030 | Msa0756540 | 0.817988 | 2.477969e-52 | -8.615850e-47 |
Msa0336030 | Msa0765240 | 0.803842 | 2.873612e-49 | -8.615850e-47 |
Msa0336030 | Msa0766580 | 0.816606 | 5.071822e-52 | -8.615850e-47 |
Msa0336030 | Msa0767100 | 0.805799 | 1.121058e-49 | -8.615850e-47 |
Msa0336030 | Msa0806800 | 0.817338 | 3.472155e-52 | -8.615850e-47 |
Msa0336030 | Msa0824660 | 0.804240 | 2.375322e-49 | -8.615850e-47 |
Msa0336030 | Msa0828920 | 0.808393 | 3.166795e-50 | -8.615850e-47 |
Msa0336030 | Msa0846140 | 0.811930 | 5.473024e-51 | -8.615850e-47 |
Msa0336030 | Msa0869100 | 0.824997 | 5.958895e-54 | -8.615850e-47 |
Msa0336030 | Msa0880140 | 0.811309 | 7.467096e-51 | -8.615850e-47 |
Msa0336030 | Msa0908050 | 0.804997 | 1.651169e-49 | -8.615850e-47 |
Msa0336030 | Msa0930780 | 0.803177 | 3.947110e-49 | -8.615850e-47 |
Msa0336030 | Msa0933100 | 0.801963 | 7.025830e-49 | -8.615850e-47 |
Msa0336030 | Msa0933230 | 0.828010 | 1.140316e-54 | -8.615850e-47 |
Msa0336030 | Msa0933310 | 0.828766 | 7.490944e-55 | -8.615850e-47 |
Msa0336030 | Msa0971090 | 0.834849 | 2.363230e-56 | -8.615850e-47 |
Msa0336030 | Msa1004600 | 0.802805 | 4.712235e-49 | -8.615850e-47 |
Msa0336030 | Msa1005870 | 0.808390 | 3.171084e-50 | -8.615850e-47 |
Msa0336030 | Msa1009750 | 0.838884 | 2.204926e-57 | -8.615850e-47 |
Msa0336030 | Msa1013770 | 0.812267 | 4.619345e-51 | -8.615850e-47 |
Msa0336030 | Msa1021210 | 0.806010 | 1.012556e-49 | -8.615850e-47 |
Msa0336030 | Msa1041210 | 0.836164 | 1.098845e-56 | -8.615850e-47 |
Msa0336030 | Msa1041670 | 0.814596 | 1.421509e-51 | -8.615850e-47 |
Msa0336030 | Msa1051990 | 0.811977 | 5.345524e-51 | -8.615850e-47 |
Msa0336030 | Msa1059960 | 0.826300 | 2.925749e-54 | -8.615850e-47 |
Msa0336030 | Msa1063950 | 0.831461 | 1.647228e-55 | -8.615850e-47 |
Msa0336030 | Msa1068190 | 0.811646 | 6.307623e-51 | -8.615850e-47 |
Msa0336030 | Msa1085200 | 0.821577 | 3.749660e-53 | -8.615850e-47 |
Msa0336030 | Msa1092010 | 0.804668 | 1.934398e-49 | -8.615850e-47 |
Msa0336030 | Msa1097820 | 0.831501 | 1.610396e-55 | -8.615850e-47 |
Msa0336030 | Msa1105160 | 0.812949 | 3.276472e-51 | -8.615850e-47 |
Msa0336030 | Msa1108160 | 0.803621 | 3.194813e-49 | -8.615850e-47 |
Msa0336030 | Msa1119200 | 0.805601 | 1.233682e-49 | -8.615850e-47 |
Msa0336030 | Msa1121440 | 0.808812 | 2.576628e-50 | -8.615850e-47 |
Msa0336030 | Msa1127590 | 0.803078 | 4.137820e-49 | -8.615850e-47 |
Msa0336030 | Msa1127890 | 0.811906 | 5.538835e-51 | -8.615850e-47 |
Msa0336030 | Msa1128600 | 0.812220 | 4.731081e-51 | -8.615850e-47 |
Msa0336030 | Msa1151910 | 0.829427 | 5.179610e-55 | -8.615850e-47 |
Msa0336030 | Msa1154030 | 0.800721 | 1.261631e-48 | -8.615850e-47 |
Msa0336030 | Msa1165740 | 0.830370 | 3.051525e-55 | -8.615850e-47 |
Msa0336030 | Msa1166560 | 0.814866 | 1.238294e-51 | -8.615850e-47 |
Msa0336030 | Msa1172670 | 0.802398 | 5.718064e-49 | -8.615850e-47 |
Msa0336030 | Msa1179990 | 0.800884 | 1.168572e-48 | -8.615850e-47 |
Msa0336030 | Msa1199570 | 0.828552 | 8.438464e-55 | -8.615850e-47 |
Msa0336030 | Msa1199830 | -0.814579 | 1.433521e-51 | -8.615850e-47 |
Msa0336030 | Msa1214890 | 0.801488 | 8.795130e-49 | -8.615850e-47 |
Msa0336030 | Msa1218600 | 0.807990 | 3.858266e-50 | -8.615850e-47 |
Msa0336030 | Msa1235250 | 0.804472 | 2.125624e-49 | -8.615850e-47 |
Msa0336030 | Msa1251160 | 0.802315 | 5.946789e-49 | -8.615850e-47 |
Msa0336030 | Msa1270630 | 0.810818 | 9.538619e-51 | -8.615850e-47 |
Msa0336030 | Msa1270700 | 0.806278 | 8.892176e-50 | -8.615850e-47 |
Msa0336030 | Msa1276660 | 0.810269 | 1.253567e-50 | -8.615850e-47 |
Msa0336030 | Msa1307950 | 0.801140 | 1.035987e-48 | -8.615850e-47 |
Msa0336030 | Msa1328640 | 0.820856 | 5.497317e-53 | -8.615850e-47 |
Msa0336030 | Msa1328710 | 0.830924 | 2.232399e-55 | -8.615850e-47 |
Msa0336030 | Msa1331910 | 0.820588 | 6.334895e-53 | -8.615850e-47 |
Msa0336030 | Msa1346370 | 0.801887 | 7.283254e-49 | -8.615850e-47 |
Msa0336030 | Msa1361410 | 0.806366 | 8.520311e-50 | -8.615850e-47 |
Msa0336030 | Msa1366600 | 0.833086 | 6.526187e-56 | -8.615850e-47 |
Msa0336030 | Msa1367590 | 0.812214 | 4.744685e-51 | -8.615850e-47 |
Msa0336030 | Msa1369150 | 0.801718 | 7.888112e-49 | -8.615850e-47 |
Msa0336030 | Msa1371640 | 0.800681 | 1.285674e-48 | -8.615850e-47 |
Msa0336030 | Msa1374040 | 0.832493 | 9.162570e-56 | -8.615850e-47 |
Msa0336030 | Msa1374060 | 0.816059 | 6.720622e-52 | -8.615850e-47 |
Msa0336030 | Msa1374550 | 0.800121 | 1.671749e-48 | -8.615850e-47 |
Msa0336030 | Msa1381350 | 0.801784 | 7.645728e-49 | -8.615850e-47 |
Msa0336030 | Msa1382560 | 0.808430 | 3.109434e-50 | -8.615850e-47 |
Msa0336030 | Msa1387010 | 0.803303 | 3.717515e-49 | -8.615850e-47 |
Msa0336030 | Msa1402400 | 0.810396 | 1.176917e-50 | -8.615850e-47 |
Msa0336030 | Msa1422580 | 0.825070 | 5.726909e-54 | -8.615850e-47 |
Msa0336030 | Msa1443300 | 0.800956 | 1.130129e-48 | -8.615850e-47 |
Msa0336030 | Msa1443930 | 0.800655 | 1.301492e-48 | -8.615850e-47 |
Msa0336030 | Msa1460020 | 0.822888 | 1.861671e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0336030 | MtrunA17_Chr2g0321711 | 95.506 | 89 | 4 | 0 | 1 | 89 | 1 | 89 | 5.75e-52 | 168 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0336030 | AT5G22320.2 | 65.169 | 89 | 31 | 0 | 1 | 89 | 1 | 89 | 5.07e-34 | 121 |
Msa0336030 | AT5G22320.1 | 65.169 | 89 | 31 | 0 | 1 | 89 | 1 | 89 | 6.57e-34 | 120 |
Find 18 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTAGCCAGCTTCAATAAAT+TGG | 0.169541 | 2_4:-55303052 | Msa0336030:CDS |
TTCCTCACTGCACTCATTCA+AGG | 0.388703 | 2_4:+55303280 | None:intergenic |
GGAGAATAAATTAGAAAGCT+TGG | 0.390492 | 2_4:-55302848 | Msa0336030:CDS |
GAAAGCTTGGAAGGAATTCA+AGG | 0.449690 | 2_4:-55302835 | Msa0336030:CDS |
TTTGAAGTGGTTATCAGTTG+TGG | 0.468829 | 2_4:-55302869 | Msa0336030:CDS |
TGAAGACTGGAAATTGAACT+TGG | 0.471828 | 2_4:+55303203 | None:intergenic |
GTATGGTGTAAAAGGGATTG+AGG | 0.475885 | 2_4:-55302903 | Msa0336030:intron |
TATGGTGTAAAAGGGATTGA+GGG | 0.493320 | 2_4:-55302902 | Msa0336030:intron |
ACTGGAAATTGAACTTGGAT+TGG | 0.499943 | 2_4:+55303208 | None:intergenic |
GGAAATTGAACTTGGATTGG+CGG | 0.520167 | 2_4:+55303211 | None:intergenic |
AATAAATTAGAAAGCTTGGA+AGG | 0.526330 | 2_4:-55302844 | Msa0336030:CDS |
GCTGTCGTTCAATACTTGCT+CGG | 0.536067 | 2_4:+55303238 | None:intergenic |
CAATAATCTCACTTCACTTG+AGG | 0.539721 | 2_4:-55303010 | Msa0336030:intron |
CGGAAAGAGCTTTGTGAGTG+AGG | 0.545351 | 2_4:+55303180 | None:intergenic |
TTTGTGAGTGAGGTGAAGAC+TGG | 0.573523 | 2_4:+55303190 | None:intergenic |
TTTATATTAACAAAGCAGCT+AGG | 0.575771 | 2_4:+55302789 | None:intergenic |
GGGCATGTGTTAATTTGAAG+TGG | 0.617171 | 2_4:-55302882 | Msa0336030:CDS |
TGCCTTGAATGAGTGCAGTG+AGG | 0.768971 | 2_4:-55303282 | Msa0336030:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAAAGTTAAGATTTTTTA+GGG | + | chr2_4:55302982-55303001 | None:intergenic | 10.0% |
!!! | AAAAAAAGTTAAGATTTTTT+AGG | + | chr2_4:55302983-55303002 | None:intergenic | 10.0% |
!! | TTGAAAGTTATGAAAAAAAT+TGG | - | chr2_4:55303124-55303143 | Msa0336030:intron | 15.0% |
!!! | TTTTTAGGGTTTTAACAAAA+GGG | + | chr2_4:55302968-55302987 | None:intergenic | 20.0% |
!!! | TTTTTTAGGGTTTTAACAAA+AGG | + | chr2_4:55302969-55302988 | None:intergenic | 20.0% |
!! | TATGAAAAAAATTGGAACTT+TGG | - | chr2_4:55303132-55303151 | Msa0336030:intron | 20.0% |
!!! | TTGATTGTATTTTGTATGTA+TGG | - | chr2_4:55303163-55303182 | Msa0336030:intron | 20.0% |
!!! | TTTTAGGGTTTTAACAAAAG+GGG | + | chr2_4:55302967-55302986 | None:intergenic | 25.0% |
!! | TTTTGTATGTATGGTGTAAA+AGG | - | chr2_4:55303172-55303191 | Msa0336030:intron | 25.0% |
! | TTTGTATGTATGGTGTAAAA+GGG | - | chr2_4:55303173-55303192 | Msa0336030:intron | 25.0% |
! | AATAAATTAGAAAGCTTGGA+AGG | - | chr2_4:55303239-55303258 | Msa0336030:CDS | 25.0% |
! | TTTATATTAACAAAGCAGCT+AGG | + | chr2_4:55303297-55303316 | None:intergenic | 25.0% |
TTAATCTTTGTTCATTTCCC+AGG | - | chr2_4:55303001-55303020 | Msa0336030:intron | 30.0% | |
! | CTTTTCCAATTTATTGAAGC+TGG | + | chr2_4:55303039-55303058 | None:intergenic | 30.0% |
GGAGAATAAATTAGAAAGCT+TGG | - | chr2_4:55303235-55303254 | Msa0336030:CDS | 30.0% | |
ACTGGAAATTGAACTTGGAT+TGG | + | chr2_4:55302878-55302897 | None:intergenic | 35.0% | |
TGAAGACTGGAAATTGAACT+TGG | + | chr2_4:55302883-55302902 | None:intergenic | 35.0% | |
GGTTTAGAGAAAAGAAAAGG+GGG | + | chr2_4:55302946-55302965 | None:intergenic | 35.0% | |
GGGTTTAGAGAAAAGAAAAG+GGG | + | chr2_4:55302947-55302966 | None:intergenic | 35.0% | |
GGGGTTTAGAGAAAAGAAAA+GGG | + | chr2_4:55302948-55302967 | None:intergenic | 35.0% | |
AGGGGTTTAGAGAAAAGAAA+AGG | + | chr2_4:55302949-55302968 | None:intergenic | 35.0% | |
CTTAGCCAGCTTCAATAAAT+TGG | - | chr2_4:55303031-55303050 | Msa0336030:CDS | 35.0% | |
CAATAATCTCACTTCACTTG+AGG | - | chr2_4:55303073-55303092 | Msa0336030:intron | 35.0% | |
TATGGTGTAAAAGGGATTGA+GGG | - | chr2_4:55303181-55303200 | Msa0336030:CDS | 35.0% | |
! | TTTGAAGTGGTTATCAGTTG+TGG | - | chr2_4:55303214-55303233 | Msa0336030:CDS | 35.0% |
! | GGAAATTGAACTTGGATTGG+CGG | + | chr2_4:55302875-55302894 | None:intergenic | 40.0% |
TTAGAGAAAAGAAAAGGGGG+TGG | + | chr2_4:55302943-55302962 | None:intergenic | 40.0% | |
GTATGGTGTAAAAGGGATTG+AGG | - | chr2_4:55303180-55303199 | Msa0336030:CDS | 40.0% | |
! | GGGCATGTGTTAATTTGAAG+TGG | - | chr2_4:55303201-55303220 | Msa0336030:CDS | 40.0% |
GAAAGCTTGGAAGGAATTCA+AGG | - | chr2_4:55303248-55303267 | Msa0336030:CDS | 40.0% | |
TTCCTCACTGCACTCATTCA+AGG | + | chr2_4:55302806-55302825 | None:intergenic | 45.0% | |
GCTGTCGTTCAATACTTGCT+CGG | + | chr2_4:55302848-55302867 | None:intergenic | 45.0% | |
TTTGTGAGTGAGGTGAAGAC+TGG | + | chr2_4:55302896-55302915 | None:intergenic | 45.0% | |
GGGTGGAAAGAAGGTTACAT+CGG | + | chr2_4:55302926-55302945 | None:intergenic | 45.0% | |
AAGAAAAGGGGGTGGAAAGA+AGG | + | chr2_4:55302935-55302954 | None:intergenic | 45.0% | |
TGCCTTGAATGAGTGCAGTG+AGG | - | chr2_4:55302801-55302820 | Msa0336030:exon | 50.0% | |
! | CGGAAAGAGCTTTGTGAGTG+AGG | + | chr2_4:55302906-55302925 | None:intergenic | 50.0% |
GCTGGCTAAGCATGATACCT+GGG | + | chr2_4:55303021-55303040 | None:intergenic | 50.0% | |
AGCTGGCTAAGCATGATACC+TGG | + | chr2_4:55303022-55303041 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 55302782 | 55303323 | 55302782 | ID=Msa0336030;Name=Msa0336030 |
chr2_4 | mRNA | 55302782 | 55303323 | 55302782 | ID=Msa0336030-mRNA-1;Parent=Msa0336030;Name=Msa0336030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=47|1|1|1|1|1|3|25|91 |
chr2_4 | exon | 55302782 | 55302911 | 55302782 | ID=Msa0336030-mRNA-1:exon:16776;Parent=Msa0336030-mRNA-1 |
chr2_4 | exon | 55303011 | 55303082 | 55303011 | ID=Msa0336030-mRNA-1:exon:16775;Parent=Msa0336030-mRNA-1 |
chr2_4 | exon | 55303178 | 55303323 | 55303178 | ID=Msa0336030-mRNA-1:exon:16774;Parent=Msa0336030-mRNA-1 |
chr2_4 | five_prime_UTR | 55303277 | 55303323 | 55303277 | ID=Msa0336030-mRNA-1:five_prime_utr;Parent=Msa0336030-mRNA-1 |
chr2_4 | CDS | 55303178 | 55303276 | 55303178 | ID=Msa0336030-mRNA-1:cds;Parent=Msa0336030-mRNA-1 |
chr2_4 | CDS | 55303011 | 55303082 | 55303011 | ID=Msa0336030-mRNA-1:cds;Parent=Msa0336030-mRNA-1 |
chr2_4 | CDS | 55302807 | 55302911 | 55302807 | ID=Msa0336030-mRNA-1:cds;Parent=Msa0336030-mRNA-1 |
chr2_4 | three_prime_UTR | 55302782 | 55302806 | 55302782 | ID=Msa0336030-mRNA-1:three_prime_utr;Parent=Msa0336030-mRNA-1 |
Gene Sequence |
Protein sequence |