Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024100 | QSD99569.1 | 96.486 | 313 | 11 | 0 | 1 | 313 | 1 | 313 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024100 | sp|Q8S9H7|DIV_ANTMA | 55.375 | 307 | 128 | 5 | 11 | 312 | 1 | 303 | 8.87e-107 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024100 | A0A896WAU3 | 96.486 | 313 | 11 | 0 | 1 | 313 | 1 | 313 | 0.0 | 634 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1024100 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1024100 | 0.809263 | 2.063254e-50 | -8.615850e-47 |
| Msa0028420 | Msa1024100 | 0.801850 | 7.413083e-49 | -8.615850e-47 |
| Msa0069330 | Msa1024100 | 0.802772 | 4.786201e-49 | -8.615850e-47 |
| Msa0078650 | Msa1024100 | 0.811845 | 5.711094e-51 | -8.615850e-47 |
| Msa0094130 | Msa1024100 | 0.810733 | 9.954993e-51 | -8.615850e-47 |
| Msa0095900 | Msa1024100 | 0.824065 | 9.875534e-54 | -8.615850e-47 |
| Msa0118570 | Msa1024100 | 0.809330 | 1.996295e-50 | -8.615850e-47 |
| Msa0754520 | Msa1024100 | 0.829343 | 5.427793e-55 | -8.615850e-47 |
| Msa0764300 | Msa1024100 | 0.810543 | 1.094001e-50 | -8.615850e-47 |
| Msa0818310 | Msa1024100 | 0.808379 | 3.188666e-50 | -8.615850e-47 |
| Msa0833220 | Msa1024100 | 0.831967 | 1.236425e-55 | -8.615850e-47 |
| Msa0126370 | Msa1024100 | 0.807170 | 5.762042e-50 | -8.615850e-47 |
| Msa0157290 | Msa1024100 | 0.809850 | 1.543314e-50 | -8.615850e-47 |
| Msa0197930 | Msa1024100 | 0.815416 | 9.350730e-52 | -8.615850e-47 |
| Msa0205840 | Msa1024100 | 0.800785 | 1.224516e-48 | -8.615850e-47 |
| Msa0225750 | Msa1024100 | 0.824655 | 7.177221e-54 | -8.615850e-47 |
| Msa0376350 | Msa1024100 | 0.805909 | 1.063136e-49 | -8.615850e-47 |
| Msa0410500 | Msa1024100 | 0.808744 | 2.664549e-50 | -8.615850e-47 |
| Msa0410650 | Msa1024100 | 0.827074 | 1.912244e-54 | -8.615850e-47 |
| Msa0475790 | Msa1024100 | 0.813119 | 3.007555e-51 | -8.615850e-47 |
| Msa1004550 | Msa1024100 | 0.803260 | 3.795265e-49 | -8.615850e-47 |
| Msa1021210 | Msa1024100 | 0.830793 | 2.403793e-55 | -8.615850e-47 |
| Msa1024100 | Msa1041670 | 0.809064 | 2.276047e-50 | -8.615850e-47 |
| Msa1024100 | Msa1063950 | 0.876165 | 1.734093e-68 | -8.615850e-47 |
| Msa1024100 | Msa1068190 | 0.802749 | 4.840085e-49 | -8.615850e-47 |
| Msa1024100 | Msa1085200 | 0.822019 | 2.963724e-53 | -8.615850e-47 |
| Msa1024100 | Msa1108160 | 0.869651 | 2.638746e-66 | -8.615850e-47 |
| Msa1024100 | Msa1151910 | 0.828104 | 1.082002e-54 | -8.615850e-47 |
| Msa1024100 | Msa1166560 | 0.807292 | 5.428686e-50 | -8.615850e-47 |
| Msa1024100 | Msa1199570 | 0.808971 | 2.383057e-50 | -8.615850e-47 |
| Msa1024100 | Msa1328710 | 0.809073 | 2.266173e-50 | -8.615850e-47 |
| Msa1024100 | Msa1402400 | 0.807537 | 4.815134e-50 | -8.615850e-47 |
| Msa1024100 | Msa1412350 | 0.819866 | 9.273082e-53 | -8.615850e-47 |
| Msa1024100 | Msa1430240 | 0.813538 | 2.433058e-51 | -8.615850e-47 |
| Msa0239190 | Msa1024100 | 0.805330 | 1.406489e-49 | -8.615850e-47 |
| Msa0239570 | Msa1024100 | 0.814789 | 1.288002e-51 | -8.615850e-47 |
| Msa0243100 | Msa1024100 | 0.801397 | 9.181884e-49 | -8.615850e-47 |
| Msa0255090 | Msa1024100 | 0.813249 | 2.815665e-51 | -8.615850e-47 |
| Msa0259120 | Msa1024100 | 0.802831 | 4.655331e-49 | -8.615850e-47 |
| Msa0259290 | Msa1024100 | 0.811762 | 5.954049e-51 | -8.615850e-47 |
| Msa0259380 | Msa1024100 | 0.806649 | 7.423062e-50 | -8.615850e-47 |
| Msa0264040 | Msa1024100 | 0.800244 | 1.578552e-48 | -8.615850e-47 |
| Msa0287650 | Msa1024100 | 0.807710 | 4.426086e-50 | -8.615850e-47 |
| Msa0294160 | Msa1024100 | 0.808195 | 3.488879e-50 | -8.615850e-47 |
| Msa0302000 | Msa1024100 | 0.808946 | 2.411771e-50 | -8.615850e-47 |
| Msa0317280 | Msa1024100 | 0.816213 | 6.209670e-52 | -8.615850e-47 |
| Msa0322690 | Msa1024100 | 0.814724 | 1.331380e-51 | -8.615850e-47 |
| Msa0342140 | Msa1024100 | 0.815405 | 9.401308e-52 | -8.615850e-47 |
| Msa0507680 | Msa1024100 | 0.824662 | 7.147859e-54 | -8.615850e-47 |
| Msa0527550 | Msa1024100 | 0.826647 | 2.418958e-54 | -8.615850e-47 |
| Msa0532070 | Msa1024100 | 0.822435 | 2.372019e-53 | -8.615850e-47 |
| Msa0546500 | Msa1024100 | 0.822050 | 2.914477e-53 | -8.615850e-47 |
| Msa0546680 | Msa1024100 | 0.801915 | 7.186430e-49 | -8.615850e-47 |
| Msa0574890 | Msa1024100 | 0.800749 | 1.245346e-48 | -8.615850e-47 |
| Msa0880140 | Msa1024100 | 0.808797 | 2.595952e-50 | -8.615850e-47 |
| Msa0896540 | Msa1024100 | 0.807461 | 4.999268e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024100 | MtrunA17_Chr7g0241761 | 95.527 | 313 | 14 | 0 | 1 | 313 | 1 | 313 | 0.0 | 624 |
| Msa1024100 | MtrunA17_Chr5g0429521 | 58.991 | 317 | 105 | 9 | 7 | 312 | 1 | 303 | 2.65e-115 | 335 |
| Msa1024100 | MtrunA17_Chr3g0104071 | 53.231 | 325 | 115 | 12 | 11 | 311 | 5 | 316 | 2.10e-102 | 303 |
| Msa1024100 | MtrunA17_Chr5g0436501 | 62.019 | 208 | 70 | 2 | 11 | 216 | 3 | 203 | 2.50e-86 | 260 |
| Msa1024100 | MtrunA17_Chr1g0162081 | 51.546 | 194 | 83 | 2 | 30 | 215 | 7 | 197 | 3.85e-57 | 186 |
| Msa1024100 | MtrunA17_Chr1g0210471 | 50.000 | 182 | 74 | 4 | 33 | 208 | 22 | 192 | 4.35e-53 | 174 |
| Msa1024100 | MtrunA17_Chr4g0062741 | 38.571 | 280 | 129 | 7 | 30 | 278 | 3 | 270 | 4.17e-52 | 173 |
| Msa1024100 | MtrunA17_Chr8g0365011 | 36.822 | 258 | 124 | 8 | 33 | 275 | 6 | 239 | 5.96e-37 | 133 |
| Msa1024100 | MtrunA17_Chr6g0488471 | 78.873 | 71 | 15 | 0 | 134 | 204 | 91 | 161 | 4.03e-33 | 123 |
| Msa1024100 | MtrunA17_Chr2g0331031 | 74.648 | 71 | 18 | 0 | 135 | 205 | 104 | 174 | 6.18e-31 | 119 |
| Msa1024100 | MtrunA17_Chr4g0055931 | 70.667 | 75 | 22 | 0 | 132 | 206 | 87 | 161 | 1.40e-30 | 117 |
| Msa1024100 | MtrunA17_Chr8g0389241 | 76.056 | 71 | 16 | 1 | 134 | 204 | 99 | 168 | 1.64e-30 | 116 |
| Msa1024100 | MtrunA17_Chr5g0415191 | 67.949 | 78 | 25 | 0 | 134 | 211 | 96 | 173 | 2.10e-27 | 108 |
| Msa1024100 | MtrunA17_Chr4g0059701 | 66.667 | 78 | 26 | 0 | 128 | 205 | 72 | 149 | 1.46e-25 | 103 |
| Msa1024100 | MtrunA17_Chr3g0135671 | 48.718 | 117 | 53 | 3 | 98 | 214 | 54 | 163 | 4.01e-25 | 100 |
| Msa1024100 | MtrunA17_Chr3g0092621 | 54.545 | 77 | 35 | 0 | 140 | 216 | 84 | 160 | 2.62e-23 | 94.4 |
| Msa1024100 | MtrunA17_Chr5g0432941 | 33.333 | 192 | 110 | 5 | 34 | 223 | 21 | 196 | 6.70e-23 | 94.7 |
| Msa1024100 | MtrunA17_Chr5g0440731 | 53.086 | 81 | 35 | 1 | 129 | 206 | 94 | 174 | 1.86e-22 | 95.1 |
| Msa1024100 | MtrunA17_Chr5g0432921 | 34.359 | 195 | 105 | 7 | 34 | 223 | 20 | 196 | 1.93e-22 | 93.6 |
| Msa1024100 | MtrunA17_Chr5g0440741 | 55.696 | 79 | 32 | 1 | 131 | 206 | 91 | 169 | 4.04e-22 | 94.0 |
| Msa1024100 | MtrunA17_Chr5g0409841 | 57.534 | 73 | 29 | 1 | 136 | 206 | 88 | 160 | 6.30e-21 | 89.7 |
| Msa1024100 | MtrunA17_Chr5g0409831 | 57.895 | 76 | 29 | 1 | 136 | 208 | 73 | 148 | 5.94e-20 | 86.7 |
| Msa1024100 | MtrunA17_Chr8g0364741 | 37.815 | 119 | 63 | 2 | 31 | 148 | 6 | 114 | 2.73e-19 | 82.4 |
| Msa1024100 | MtrunA17_Chr6g0452791 | 72.917 | 48 | 13 | 0 | 140 | 187 | 80 | 127 | 4.08e-19 | 83.2 |
| Msa1024100 | MtrunA17_Chr8g0364731 | 60.294 | 68 | 25 | 1 | 150 | 215 | 11 | 78 | 6.61e-18 | 80.1 |
| Msa1024100 | MtrunA17_Chr3g0141601 | 48.718 | 78 | 37 | 1 | 33 | 107 | 5 | 82 | 1.30e-17 | 76.6 |
| Msa1024100 | MtrunA17_Chr1g0155181 | 47.222 | 72 | 38 | 0 | 30 | 101 | 2 | 73 | 2.42e-17 | 75.9 |
| Msa1024100 | MtrunA17_Chr5g0404101 | 45.333 | 75 | 41 | 0 | 23 | 97 | 7 | 81 | 6.97e-17 | 74.7 |
| Msa1024100 | MtrunA17_Chr3g0144631 | 48.529 | 68 | 35 | 0 | 33 | 100 | 14 | 81 | 3.00e-16 | 72.4 |
| Msa1024100 | MtrunA17_Chr8g0373131 | 48.571 | 70 | 35 | 1 | 32 | 101 | 2 | 70 | 1.11e-15 | 70.9 |
| Msa1024100 | MtrunA17_Chr8g0373111 | 48.571 | 70 | 35 | 1 | 32 | 101 | 2 | 70 | 1.11e-15 | 70.9 |
| Msa1024100 | MtrunA17_Chr8g0373121 | 48.571 | 70 | 35 | 1 | 32 | 101 | 2 | 70 | 1.11e-15 | 70.9 |
| Msa1024100 | MtrunA17_Chr6g0449111 | 44.928 | 69 | 38 | 0 | 30 | 98 | 5 | 73 | 3.26e-15 | 69.7 |
| Msa1024100 | MtrunA17_Chr7g0255841 | 51.515 | 66 | 32 | 0 | 38 | 103 | 15 | 80 | 3.81e-14 | 67.0 |
| Msa1024100 | MtrunA17_Chr3g0113121 | 48.000 | 75 | 32 | 1 | 142 | 209 | 97 | 171 | 1.89e-13 | 68.6 |
| Msa1024100 | MtrunA17_Chr3g0081631 | 43.529 | 85 | 38 | 2 | 35 | 118 | 10 | 85 | 1.99e-13 | 65.1 |
| Msa1024100 | MtrunA17_Chr8g0373101 | 45.714 | 70 | 37 | 1 | 32 | 101 | 2 | 70 | 3.51e-13 | 63.9 |
| Msa1024100 | MtrunA17_Chr1g0192061 | 52.113 | 71 | 29 | 2 | 142 | 208 | 63 | 132 | 4.16e-13 | 67.0 |
| Msa1024100 | MtrunA17_Chr5g0404301 | 47.619 | 63 | 32 | 1 | 33 | 95 | 2 | 63 | 1.77e-12 | 61.6 |
| Msa1024100 | MtrunA17_Chr8g0370121 | 44.068 | 59 | 33 | 0 | 128 | 186 | 88 | 146 | 4.84e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024100 | AT2G38090.1 | 74.762 | 210 | 46 | 2 | 7 | 209 | 1 | 210 | 2.21e-116 | 338 |
| Msa1024100 | AT5G58900.1 | 64.651 | 215 | 59 | 5 | 11 | 211 | 1 | 212 | 1.08e-90 | 272 |
| Msa1024100 | AT5G01200.1 | 60.268 | 224 | 64 | 6 | 2 | 209 | 1 | 215 | 6.76e-84 | 254 |
| Msa1024100 | AT3G11280.2 | 58.454 | 207 | 67 | 4 | 11 | 209 | 1 | 196 | 5.20e-75 | 231 |
| Msa1024100 | AT3G11280.1 | 58.454 | 207 | 67 | 4 | 11 | 209 | 1 | 196 | 5.20e-75 | 231 |
| Msa1024100 | AT5G05790.2 | 60.106 | 188 | 68 | 3 | 33 | 218 | 29 | 211 | 2.00e-71 | 223 |
| Msa1024100 | AT5G05790.1 | 60.106 | 188 | 68 | 3 | 33 | 218 | 29 | 211 | 2.00e-71 | 223 |
| Msa1024100 | AT5G08520.1 | 49.468 | 188 | 92 | 2 | 30 | 215 | 7 | 193 | 6.42e-54 | 178 |
| Msa1024100 | AT1G49010.1 | 48.000 | 200 | 81 | 4 | 33 | 210 | 6 | 204 | 2.42e-49 | 167 |
| Msa1024100 | AT5G04760.1 | 47.027 | 185 | 86 | 3 | 33 | 217 | 4 | 176 | 1.96e-47 | 159 |
| Msa1024100 | AT5G23650.1 | 45.304 | 181 | 91 | 3 | 32 | 207 | 10 | 187 | 3.93e-44 | 154 |
| Msa1024100 | AT3G10580.2 | 38.587 | 184 | 91 | 4 | 38 | 220 | 11 | 173 | 1.54e-32 | 121 |
| Msa1024100 | AT3G10580.1 | 38.587 | 184 | 91 | 4 | 38 | 220 | 11 | 173 | 3.02e-32 | 121 |
| Msa1024100 | AT5G47390.1 | 76.712 | 73 | 17 | 0 | 132 | 204 | 88 | 160 | 1.06e-31 | 122 |
| Msa1024100 | AT5G61620.1 | 56.436 | 101 | 37 | 1 | 111 | 211 | 86 | 179 | 7.38e-29 | 113 |
| Msa1024100 | AT5G56840.1 | 59.551 | 89 | 34 | 2 | 135 | 221 | 86 | 174 | 1.25e-27 | 107 |
| Msa1024100 | AT1G70000.1 | 72.222 | 72 | 20 | 0 | 134 | 205 | 92 | 163 | 1.39e-26 | 105 |
| Msa1024100 | AT1G70000.2 | 72.222 | 72 | 20 | 0 | 134 | 205 | 92 | 163 | 1.39e-26 | 105 |
| Msa1024100 | AT4G09450.1 | 37.572 | 173 | 87 | 3 | 34 | 206 | 6 | 157 | 2.58e-26 | 103 |
| Msa1024100 | AT3G16350.1 | 84.906 | 53 | 8 | 0 | 135 | 187 | 132 | 184 | 1.93e-25 | 105 |
| Msa1024100 | AT1G19000.2 | 64.935 | 77 | 27 | 0 | 136 | 212 | 98 | 174 | 1.42e-24 | 100 |
| Msa1024100 | AT1G19000.1 | 64.935 | 77 | 27 | 0 | 136 | 212 | 98 | 174 | 1.42e-24 | 100 |
| Msa1024100 | AT1G74840.2 | 80.769 | 52 | 10 | 0 | 135 | 186 | 91 | 142 | 1.44e-23 | 97.1 |
| Msa1024100 | AT1G74840.1 | 80.769 | 52 | 10 | 0 | 135 | 186 | 91 | 142 | 2.15e-23 | 97.4 |
| Msa1024100 | AT3G10590.1 | 35.204 | 196 | 118 | 7 | 34 | 226 | 6 | 195 | 2.77e-20 | 87.4 |
| Msa1024100 | AT1G75250.2 | 52.239 | 67 | 32 | 0 | 33 | 99 | 10 | 76 | 1.23e-16 | 74.3 |
| Msa1024100 | AT1G75250.1 | 52.239 | 67 | 32 | 0 | 33 | 99 | 10 | 76 | 3.86e-16 | 73.9 |
| Msa1024100 | AT4G39250.1 | 48.485 | 66 | 34 | 0 | 35 | 100 | 14 | 79 | 3.19e-15 | 70.9 |
| Msa1024100 | AT2G21650.1 | 47.761 | 67 | 35 | 0 | 35 | 101 | 14 | 80 | 7.18e-14 | 67.0 |
| Msa1024100 | AT1G19510.1 | 43.590 | 78 | 41 | 1 | 38 | 115 | 15 | 89 | 2.61e-13 | 65.5 |
| Msa1024100 | AT2G18328.1 | 46.032 | 63 | 34 | 0 | 39 | 101 | 15 | 77 | 1.35e-11 | 60.1 |
Find 99 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAGCAAAACTATATATTT+AGG | 0.103703 | 7_1:-52588173 | Msa1024100:three_prime_UTR |
| GAAACAACCAATTGGAATTT+TGG | 0.118121 | 7_1:+52590170 | None:intergenic |
| ACGAAGGCGGTTTCATTTCT+TGG | 0.231424 | 7_1:+52588837 | None:intergenic |
| TATTTCATTAGGCAGCTTTC+AGG | 0.241192 | 7_1:-52588911 | Msa1024100:CDS |
| TATTAATAATTAATAAATTC+TGG | 0.249828 | 7_1:-52590459 | Msa1024100:five_prime_UTR |
| AATTTAGAACATAAGGGTTT+TGG | 0.264507 | 7_1:+52590588 | None:intergenic |
| TTTAGATTCCTTAGTTATTT+GGG | 0.280643 | 7_1:-52590402 | Msa1024100:five_prime_UTR |
| TTCATAGATTCTAATTACTA+TGG | 0.291046 | 7_1:+52588499 | None:intergenic |
| TGTTTGATAATATGCTTCTT+TGG | 0.301353 | 7_1:-52590341 | Msa1024100:five_prime_UTR |
| GCATATTATCAAACAGCATT+TGG | 0.304060 | 7_1:+52590349 | None:intergenic |
| GTAGCAAAACTATATATTTA+GGG | 0.309531 | 7_1:-52588172 | Msa1024100:three_prime_UTR |
| TACAAAAGTGGAAGTTCTTA+TGG | 0.317811 | 7_1:+52590318 | None:intergenic |
| ACATAGTTCCATGAGTGAAT+TGG | 0.333627 | 7_1:+52588245 | None:intergenic |
| AGGGTTGCTGAGATGATTCC+TGG | 0.340116 | 7_1:-52590052 | Msa1024100:CDS |
| TCCTTCTTCTCTGGACCATT+TGG | 0.345458 | 7_1:-52588801 | Msa1024100:CDS |
| TTGGAGTGAAATTAAGCAAC+TGG | 0.359489 | 7_1:+52590607 | None:intergenic |
| ACATCAAAATTTAGAACATA+AGG | 0.371517 | 7_1:+52590581 | None:intergenic |
| TGCTTTGGCTTATTATGATA+AGG | 0.376321 | 7_1:-52590095 | Msa1024100:CDS |
| ATGCTCAGAAGTATTTCATT+AGG | 0.387800 | 7_1:-52588922 | Msa1024100:CDS |
| AAGACAGTGATCTATGAAAC+AGG | 0.390474 | 7_1:+52590835 | None:intergenic |
| CATATTATCAAACAGCATTT+GGG | 0.398281 | 7_1:+52590350 | None:intergenic |
| TTAGTTGAATTGAAAACAAA+TGG | 0.411456 | 7_1:+52588692 | None:intergenic |
| CATCAAAATTTAGAACATAA+GGG | 0.411862 | 7_1:+52590582 | None:intergenic |
| AAAAGTATGGCAAGGGAGAC+TGG | 0.414734 | 7_1:-52589000 | Msa1024100:CDS |
| CCTATATCCAAAATTCCAAT+TGG | 0.417676 | 7_1:-52590177 | Msa1024100:CDS |
| TGATGTGATTAAACAGTATA+GGG | 0.417708 | 7_1:-52590017 | Msa1024100:CDS |
| GCTGGTTTGATACCAGTTCC+TGG | 0.417898 | 7_1:-52589965 | Msa1024100:CDS |
| TAGTATCAAAAGGTGAAAAC+TGG | 0.419071 | 7_1:+52588576 | None:intergenic |
| GCAACCCTTATCCATCTATC+AGG | 0.422928 | 7_1:+52590067 | None:intergenic |
| TAAGCTCTTTGAGAATGCTT+TGG | 0.425147 | 7_1:-52590110 | Msa1024100:CDS |
| TTCTCTGGACCATTTGGTGA+AGG | 0.432138 | 7_1:-52588795 | Msa1024100:CDS |
| ATAAGGATACTCCTGATAGA+TGG | 0.435285 | 7_1:-52590078 | Msa1024100:CDS |
| AAGTAACGATCCTTCTTCTC+TGG | 0.444961 | 7_1:-52588810 | Msa1024100:CDS |
| ACAAATGGCATGCCTTCATC+TGG | 0.446288 | 7_1:+52588707 | None:intergenic |
| TTCAGCTACCCAAATAACTA+AGG | 0.451392 | 7_1:+52590394 | None:intergenic |
| TTTGTCCAGCATGGTTAAGC+AGG | 0.451543 | 7_1:-52588747 | Msa1024100:CDS |
| TTTCAGGAGGGAAGGATAAG+AGG | 0.455606 | 7_1:-52588895 | Msa1024100:CDS |
| CATATAATTCCACTCTATGT+AGG | 0.471260 | 7_1:+52588335 | None:intergenic |
| ATACTCCTGATAGATGGATA+AGG | 0.478456 | 7_1:-52590072 | Msa1024100:CDS |
| GATTTGCAACCTTCACCAAA+TGG | 0.478639 | 7_1:+52588786 | None:intergenic |
| GTGATGTGATTAAACAGTAT+AGG | 0.483162 | 7_1:-52590018 | Msa1024100:CDS |
| GACTGGAAATTACCAGATGA+AGG | 0.483800 | 7_1:-52588719 | Msa1024100:CDS |
| TACTCCTGATAGATGGATAA+GGG | 0.485001 | 7_1:-52590071 | Msa1024100:CDS |
| GATGTGTGTGTTATTGAAGC+TGG | 0.486957 | 7_1:-52589983 | Msa1024100:CDS |
| AATGAAAGAAAGAGAGAGAG+AGG | 0.487113 | 7_1:+52590875 | None:intergenic |
| ACCAAATGGTCCAGAGAAGA+AGG | 0.487953 | 7_1:+52588800 | None:intergenic |
| TTCTTCCTTTCCTGCTCCGA+CGG | 0.488987 | 7_1:+52589839 | None:intergenic |
| AGAGAGATAAACTACAAAAG+TGG | 0.500161 | 7_1:+52590306 | None:intergenic |
| ATTTGCAAAATAGTATCAAA+AGG | 0.512642 | 7_1:+52588566 | None:intergenic |
| CTAGTTGTATAACCAGGAAC+TGG | 0.514434 | 7_1:+52589953 | None:intergenic |
| CTCGGCCGTCGGAGCAGGAA+AGG | 0.514515 | 7_1:-52589844 | Msa1024100:CDS |
| CTATGCTCCTCTTCAGTCCA+TGG | 0.515244 | 7_1:+52589809 | None:intergenic |
| GAGATGAAAATAAGCATAAG+TGG | 0.519517 | 7_1:+52590745 | None:intergenic |
| TTCACAAGAATCGAAATCAC+CGG | 0.522859 | 7_1:-52588633 | Msa1024100:CDS |
| GATTGACCACTGTGATATCA+TGG | 0.524764 | 7_1:+52588861 | None:intergenic |
| AACTAAAGGAAACATGTTTG+TGG | 0.525249 | 7_1:-52588675 | Msa1024100:CDS |
| TGGTTAAGCAGGAATTTGAC+TGG | 0.530767 | 7_1:-52588736 | Msa1024100:CDS |
| AAATTCCTGCTTAACCATGC+TGG | 0.533010 | 7_1:+52588742 | None:intergenic |
| ATGTAGTTCCAATTCACTCA+TGG | 0.543564 | 7_1:-52588253 | Msa1024100:three_prime_UTR |
| GCATGACTTGCGACTTGAGT+TGG | 0.545637 | 7_1:+52588941 | None:intergenic |
| GAATCATAATTTGTCCAGCA+TGG | 0.552113 | 7_1:-52588756 | Msa1024100:CDS |
| TCACTCATGGAACTATGTAA+AGG | 0.559728 | 7_1:-52588240 | Msa1024100:three_prime_UTR |
| TTCATTAGGCAGCTTTCAGG+AGG | 0.562103 | 7_1:-52588908 | Msa1024100:CDS |
| ATGTTTGTGGCACCGTCGTG+CGG | 0.567658 | 7_1:-52588662 | Msa1024100:CDS |
| TCACAAGAATCGAAATCACC+GGG | 0.573301 | 7_1:-52588632 | Msa1024100:CDS |
| TGTTTGTGGCACCGTCGTGC+GGG | 0.575136 | 7_1:-52588661 | Msa1024100:CDS |
| TTATCTAGAACAATGAATAG+AGG | 0.579227 | 7_1:-52590223 | Msa1024100:CDS |
| GAGACTGGAGAAACATCTCT+AGG | 0.579618 | 7_1:-52588985 | Msa1024100:CDS |
| TAGGCAGCTTTCAGGAGGGA+AGG | 0.581740 | 7_1:-52588903 | Msa1024100:CDS |
| AAGTGGTTCGACTCGGCCGT+CGG | 0.583732 | 7_1:-52589855 | Msa1024100:CDS |
| TCGGAGCAGGAAAGGAAGAA+AGG | 0.584815 | 7_1:-52589836 | Msa1024100:CDS |
| TGGAGTGAAATTAAGCAACT+GGG | 0.590812 | 7_1:+52590608 | None:intergenic |
| GTACTACGAAGCACTCATCA+TGG | 0.592304 | 7_1:-52588602 | Msa1024100:CDS |
| ATTATCAAACAGCATTTGGG+TGG | 0.594579 | 7_1:+52590353 | None:intergenic |
| GACTTGAGTTGGTGTTCTTG+TGG | 0.595027 | 7_1:+52588952 | None:intergenic |
| TTGGATTGGGATAACAGTGA+AGG | 0.598870 | 7_1:-52589920 | Msa1024100:CDS |
| TCGTTACTTTCTGACGAAGG+CGG | 0.604880 | 7_1:+52588824 | None:intergenic |
| AAAGGAAGAAAGGTGTGCCA+TGG | 0.605391 | 7_1:-52589826 | Msa1024100:CDS |
| CATGGACTGAAGAGGAGCAT+AGG | 0.606328 | 7_1:-52589808 | Msa1024100:intron |
| GAGGATCTTCCTACATAGAG+TGG | 0.606785 | 7_1:-52588344 | Msa1024100:three_prime_UTR |
| TGGATTGGGATAACAGTGAA+GGG | 0.609140 | 7_1:-52589919 | Msa1024100:CDS |
| AGGTGTGCCATGGACTGAAG+AGG | 0.618331 | 7_1:-52589816 | Msa1024100:CDS |
| GGAAAAGAAGTGGTTCGACT+CGG | 0.625707 | 7_1:-52589862 | Msa1024100:CDS |
| CTGGACAAATTATGATTCTG+TGG | 0.628813 | 7_1:+52588761 | None:intergenic |
| AGTGTTGGTGGGAAAAGAAG+TGG | 0.631430 | 7_1:-52589872 | Msa1024100:CDS |
| TGTACTTTAACAGATTTGTG+AGG | 0.635184 | 7_1:-52588363 | Msa1024100:three_prime_UTR |
| ATGTACTAGAATAGAACTAG+TGG | 0.646388 | 7_1:-52588203 | Msa1024100:three_prime_UTR |
| GGATCGTTACTTTCTGACGA+AGG | 0.646642 | 7_1:+52588821 | None:intergenic |
| TTGTGAAAGAAGAAGTGAAG+TGG | 0.648643 | 7_1:+52590771 | None:intergenic |
| TCATTAGGCAGCTTTCAGGA+GGG | 0.651718 | 7_1:-52588907 | Msa1024100:CDS |
| GCAGCATCAATGAACTGAGG+AGG | 0.656599 | 7_1:-52588534 | Msa1024100:exon |
| TGGTTGTTTCAAGAAAACAA+TGG | 0.668637 | 7_1:-52590157 | Msa1024100:CDS |
| AGACAGTGATCTATGAAACA+GGG | 0.679917 | 7_1:+52590836 | None:intergenic |
| AAAGAACTAGTTGTATAACC+AGG | 0.682452 | 7_1:+52589947 | None:intergenic |
| TGTGAAGAAATCCCGCACGA+CGG | 0.712958 | 7_1:+52588650 | None:intergenic |
| TATGCAGCATCAATGAACTG+AGG | 0.716248 | 7_1:-52588537 | Msa1024100:exon |
| ATGAAAATAAGCATAAGTGG+TGG | 0.742414 | 7_1:+52590748 | None:intergenic |
| CACAAGAATCGAAATCACCG+GGG | 0.784252 | 7_1:-52588631 | Msa1024100:CDS |
| AAGTATCCATGATATCACAG+TGG | 0.791298 | 7_1:-52588867 | Msa1024100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTTTCTCTTT+TGG | - | chr7_1:52588535-52588554 | Msa1024100:exon | 15.0% |
| !!! | ATTTTAGTTAGTGAAATTAT+AGG | - | chr7_1:52589371-52589390 | Msa1024100:intron | 15.0% |
| !!! | AATGAGTTGAAGAATTTTAT+TGG | + | chr7_1:52588396-52588415 | None:intergenic | 20.0% |
| !!! | CATCAAAATTTAGAACATAA+GGG | + | chr7_1:52588485-52588504 | None:intergenic | 20.0% |
| !!! | ACATCAAAATTTAGAACATA+AGG | + | chr7_1:52588486-52588505 | None:intergenic | 20.0% |
| !!! | TTATGTTCTAAATTTTGATG+TGG | - | chr7_1:52588485-52588504 | Msa1024100:three_prime_UTR | 20.0% |
| !!! | TATGTTCTAAATTTTGATGT+GGG | - | chr7_1:52588486-52588505 | Msa1024100:three_prime_UTR | 20.0% |
| !!! | TTTTAGATTCCTTAGTTATT+TGG | - | chr7_1:52588661-52588680 | Msa1024100:CDS | 20.0% |
| !! | TTTAGATTCCTTAGTTATTT+GGG | - | chr7_1:52588662-52588681 | Msa1024100:CDS | 20.0% |
| !!! | CCATTTTCTAACATTATTAA+CGG | + | chr7_1:52589792-52589811 | None:intergenic | 20.0% |
| !! | TATGGTTGATTAACATAAAA+AGG | + | chr7_1:52590023-52590042 | None:intergenic | 20.0% |
| !!! | TTTTTATGTTAATCAACCAT+AGG | - | chr7_1:52590022-52590041 | Msa1024100:CDS | 20.0% |
| !! | TTAGTTGAATTGAAAACAAA+TGG | + | chr7_1:52590375-52590394 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCAATTCAACTAA+AGG | - | chr7_1:52590375-52590394 | Msa1024100:five_prime_UTR | 20.0% |
| !! | ATTTGCAAAATAGTATCAAA+AGG | + | chr7_1:52590501-52590520 | None:intergenic | 20.0% |
| !! | TTCATAGATTCTAATTACTA+TGG | + | chr7_1:52590568-52590587 | None:intergenic | 20.0% |
| !! | TGTAGCAAAACTATATATTT+AGG | - | chr7_1:52590891-52590910 | Msa1024100:five_prime_UTR | 20.0% |
| !! | GTAGCAAAACTATATATTTA+GGG | - | chr7_1:52590892-52590911 | Msa1024100:five_prime_UTR | 20.0% |
| !!! | AATTTAGAACATAAGGGTTT+TGG | + | chr7_1:52588479-52588498 | None:intergenic | 25.0% |
| !!! | TAAATTCTGGATTTTTTCCT+TGG | - | chr7_1:52588618-52588637 | Msa1024100:CDS | 25.0% |
| ! | CATATTATCAAACAGCATTT+GGG | + | chr7_1:52588717-52588736 | None:intergenic | 25.0% |
| !! | TGTTTGATAATATGCTTCTT+TGG | - | chr7_1:52588723-52588742 | Msa1024100:CDS | 25.0% |
| !! | TTATCTAGAACAATGAATAG+AGG | - | chr7_1:52588841-52588860 | Msa1024100:CDS | 25.0% |
| ! | TGATGTGATTAAACAGTATA+GGG | - | chr7_1:52589047-52589066 | Msa1024100:intron | 25.0% |
| !!! | TACAACTAGTTCTTTTACAT+TGG | - | chr7_1:52589125-52589144 | Msa1024100:intron | 25.0% |
| !! | TAGTTCTTTTACATTGGATT+GGG | - | chr7_1:52589131-52589150 | Msa1024100:intron | 25.0% |
| ! | TTAGTGAAATTATAGGTGTT+GGG | - | chr7_1:52589378-52589397 | Msa1024100:intron | 25.0% |
| !! | AATTTTGTGCTTGAAATGAA+TGG | - | chr7_1:52589402-52589421 | Msa1024100:intron | 25.0% |
| ! | ACTTAACCAAAGAACTAATA+TGG | + | chr7_1:52589464-52589483 | None:intergenic | 25.0% |
| ! | AAAAACCTTCAATCATTCTA+GGG | + | chr7_1:52589516-52589535 | None:intergenic | 25.0% |
| ! | TAAAAACCTTCAATCATTCT+AGG | + | chr7_1:52589517-52589536 | None:intergenic | 25.0% |
| ! | ACTATGGAATCATTCTAATA+TGG | + | chr7_1:52589547-52589566 | None:intergenic | 25.0% |
| ! | AATGATTCCATAGTGTAAAT+CGG | - | chr7_1:52589553-52589572 | Msa1024100:intron | 25.0% |
| ! | ATCGATGATTTGAATAATCT+AGG | - | chr7_1:52589591-52589610 | Msa1024100:intron | 25.0% |
| ! | ATGATTTGAATAATCTAGGA+AGG | - | chr7_1:52589595-52589614 | Msa1024100:intron | 25.0% |
| !!! | GTTTTTGTGCTTTGAAATTA+TGG | - | chr7_1:52589677-52589696 | Msa1024100:intron | 25.0% |
| ! | CCGTTAATAATGTTAGAAAA+TGG | - | chr7_1:52589789-52589808 | Msa1024100:intron | 25.0% |
| ! | TATAATAATCTATGTAACCC+CGG | + | chr7_1:52589898-52589917 | None:intergenic | 25.0% |
| ! | GGGTTACATAGATTATTATA+TGG | - | chr7_1:52589898-52589917 | Msa1024100:CDS | 25.0% |
| !! | AACAAGTAAAGCATTTATCA+AGG | + | chr7_1:52589929-52589948 | None:intergenic | 25.0% |
| ! | TTGATAAATGCTTTACTTGT+TGG | - | chr7_1:52589928-52589947 | Msa1024100:CDS | 25.0% |
| !! | TGATTTTCTGATTACTTGTT+TGG | - | chr7_1:52590669-52590688 | Msa1024100:five_prime_UTR | 25.0% |
| ATGAAAATAAGCATAAGTGG+TGG | + | chr7_1:52588319-52588338 | None:intergenic | 30.0% | |
| GAGATGAAAATAAGCATAAG+TGG | + | chr7_1:52588322-52588341 | None:intergenic | 30.0% | |
| TGGAACAAAAAGAATGAAGA+GGG | + | chr7_1:52588376-52588395 | None:intergenic | 30.0% | |
| TTGGAACAAAAAGAATGAAG+AGG | + | chr7_1:52588377-52588396 | None:intergenic | 30.0% | |
| GCATATTATCAAACAGCATT+TGG | + | chr7_1:52588718-52588737 | None:intergenic | 30.0% | |
| TACAAAAGTGGAAGTTCTTA+TGG | + | chr7_1:52588749-52588768 | None:intergenic | 30.0% | |
| AGAGAGATAAACTACAAAAG+TGG | + | chr7_1:52588761-52588780 | None:intergenic | 30.0% | |
| ! | CCAATTGGAATTTTGGATAT+AGG | + | chr7_1:52588890-52588909 | None:intergenic | 30.0% |
| CCTATATCCAAAATTCCAAT+TGG | - | chr7_1:52588887-52588906 | Msa1024100:CDS | 30.0% | |
| ! | GAAACAACCAATTGGAATTT+TGG | + | chr7_1:52588897-52588916 | None:intergenic | 30.0% |
| ! | GTTTTCTTGAAACAACCAAT+TGG | + | chr7_1:52588905-52588924 | None:intergenic | 30.0% |
| ! | TGGTTGTTTCAAGAAAACAA+TGG | - | chr7_1:52588907-52588926 | Msa1024100:CDS | 30.0% |
| ! | TGCTTTGGCTTATTATGATA+AGG | - | chr7_1:52588969-52588988 | Msa1024100:CDS | 30.0% |
| GTGATGTGATTAAACAGTAT+AGG | - | chr7_1:52589046-52589065 | Msa1024100:intron | 30.0% | |
| AAAGAACTAGTTGTATAACC+AGG | + | chr7_1:52589120-52589139 | None:intergenic | 30.0% | |
| !! | CTAGTTCTTTTACATTGGAT+TGG | - | chr7_1:52589130-52589149 | Msa1024100:intron | 30.0% |
| GTTAGTGAAATTATAGGTGT+TGG | - | chr7_1:52589377-52589396 | Msa1024100:intron | 30.0% | |
| TGTTTGAGCGATTATAAATC+AGG | - | chr7_1:52589719-52589738 | Msa1024100:intron | 30.0% | |
| !! | TATCTATGAAGCATTGATAC+TGG | - | chr7_1:52589756-52589775 | Msa1024100:intron | 30.0% |
| TTGAATGTAACTACACGTTT+CGG | - | chr7_1:52589819-52589838 | Msa1024100:CDS | 30.0% | |
| ! | AACCATAGGCAATTTTTGTT+GGG | - | chr7_1:52590036-52590055 | Msa1024100:CDS | 30.0% |
| !! | ATGCTCAGAAGTATTTCATT+AGG | - | chr7_1:52590142-52590161 | Msa1024100:CDS | 30.0% |
| AACTAAAGGAAACATGTTTG+TGG | - | chr7_1:52590389-52590408 | Msa1024100:five_prime_UTR | 30.0% | |
| TAGTATCAAAAGGTGAAAAC+TGG | + | chr7_1:52590491-52590510 | None:intergenic | 30.0% | |
| TGTACTTTAACAGATTTGTG+AGG | - | chr7_1:52590701-52590720 | Msa1024100:five_prime_UTR | 30.0% | |
| CATATAATTCCACTCTATGT+AGG | + | chr7_1:52590732-52590751 | None:intergenic | 30.0% | |
| ! | TCTCTCAACTTTTTATGAGA+AGG | - | chr7_1:52590777-52590796 | Msa1024100:five_prime_UTR | 30.0% |
| ATGTACTAGAATAGAACTAG+TGG | - | chr7_1:52590861-52590880 | Msa1024100:five_prime_UTR | 30.0% | |
| AATGAAAGAAAGAGAGAGAG+AGG | + | chr7_1:52588192-52588211 | None:intergenic | 35.0% | |
| AGACAGTGATCTATGAAACA+GGG | + | chr7_1:52588231-52588250 | None:intergenic | 35.0% | |
| AAGACAGTGATCTATGAAAC+AGG | + | chr7_1:52588232-52588251 | None:intergenic | 35.0% | |
| TTGTGAAAGAAGAAGTGAAG+TGG | + | chr7_1:52588296-52588315 | None:intergenic | 35.0% | |
| TGGAGTGAAATTAAGCAACT+GGG | + | chr7_1:52588459-52588478 | None:intergenic | 35.0% | |
| TTGGAGTGAAATTAAGCAAC+TGG | + | chr7_1:52588460-52588479 | None:intergenic | 35.0% | |
| !!! | TGGATTTTTTCCTTGGAGTT+TGG | - | chr7_1:52588625-52588644 | Msa1024100:CDS | 35.0% |
| TTCAGCTACCCAAATAACTA+AGG | + | chr7_1:52588673-52588692 | None:intergenic | 35.0% | |
| ATTATCAAACAGCATTTGGG+TGG | + | chr7_1:52588714-52588733 | None:intergenic | 35.0% | |
| ! | GAATTTTGGATATAGGAAGC+TGG | + | chr7_1:52588883-52588902 | None:intergenic | 35.0% |
| ! | TAAGCTCTTTGAGAATGCTT+TGG | - | chr7_1:52588954-52588973 | Msa1024100:CDS | 35.0% |
| ATAAGGATACTCCTGATAGA+TGG | - | chr7_1:52588986-52589005 | Msa1024100:CDS | 35.0% | |
| ATACTCCTGATAGATGGATA+AGG | - | chr7_1:52588992-52589011 | Msa1024100:CDS | 35.0% | |
| TACTCCTGATAGATGGATAA+GGG | - | chr7_1:52588993-52589012 | Msa1024100:CDS | 35.0% | |
| ATGATTCCTGGAAAAACTGT+TGG | - | chr7_1:52589024-52589043 | Msa1024100:intron | 35.0% | |
| !! | TTCAAGCAGTTTTGTAGTGT+TGG | - | chr7_1:52589177-52589196 | Msa1024100:intron | 35.0% |
| ! | CATCAGCCATATTAGTTCTT+TGG | - | chr7_1:52589455-52589474 | Msa1024100:intron | 35.0% |
| TAAAGCCCTAGAATGATTGA+AGG | - | chr7_1:52589508-52589527 | Msa1024100:intron | 35.0% | |
| !! | TGAATCACCGATTTACACTA+TGG | + | chr7_1:52589563-52589582 | None:intergenic | 35.0% |
| ATCTAGGAAGGAAGAATCAT+TGG | - | chr7_1:52589607-52589626 | Msa1024100:intron | 35.0% | |
| AGAGTCAGATATCAAATGCA+AGG | + | chr7_1:52589956-52589975 | None:intergenic | 35.0% | |
| !! | ATCCAGTGTTTTTGCTTCTT+TGG | - | chr7_1:52589980-52589999 | Msa1024100:CDS | 35.0% |
| ! | CAACCATAGGCAATTTTTGT+TGG | - | chr7_1:52590035-52590054 | Msa1024100:CDS | 35.0% |
| TTGTTGGGTCTGAAAAAGTA+TGG | - | chr7_1:52590051-52590070 | Msa1024100:CDS | 35.0% | |
| TATTTCATTAGGCAGCTTTC+AGG | - | chr7_1:52590153-52590172 | Msa1024100:CDS | 35.0% | |
| AAGTATCCATGATATCACAG+TGG | - | chr7_1:52590197-52590216 | Msa1024100:CDS | 35.0% | |
| CTGGACAAATTATGATTCTG+TGG | + | chr7_1:52590306-52590325 | None:intergenic | 35.0% | |
| ! | GAATCATAATTTGTCCAGCA+TGG | - | chr7_1:52590308-52590327 | Msa1024100:five_prime_UTR | 35.0% |
| TTCACAAGAATCGAAATCAC+CGG | - | chr7_1:52590431-52590450 | Msa1024100:five_prime_UTR | 35.0% | |
| ATGTAGTTCCAATTCACTCA+TGG | - | chr7_1:52590811-52590830 | Msa1024100:five_prime_UTR | 35.0% | |
| ACATAGTTCCATGAGTGAAT+TGG | + | chr7_1:52590822-52590841 | None:intergenic | 35.0% | |
| TCACTCATGGAACTATGTAA+AGG | - | chr7_1:52590824-52590843 | Msa1024100:five_prime_UTR | 35.0% | |
| AAAGAGAGAGAGAGGTCAAA+GGG | + | chr7_1:52588184-52588203 | None:intergenic | 40.0% | |
| !!! | GTGCTTTTTTCCAAACTCCA+AGG | + | chr7_1:52588638-52588657 | None:intergenic | 40.0% |
| ! | ACATCACCAACAGTTTTTCC+AGG | + | chr7_1:52589033-52589052 | None:intergenic | 40.0% |
| ! | GATGTGTGTGTTATTGAAGC+TGG | - | chr7_1:52589081-52589100 | Msa1024100:intron | 40.0% |
| CTAGTTGTATAACCAGGAAC+TGG | + | chr7_1:52589114-52589133 | None:intergenic | 40.0% | |
| ! | TTGGATTGGGATAACAGTGA+AGG | - | chr7_1:52589144-52589163 | Msa1024100:intron | 40.0% |
| ! | TGGATTGGGATAACAGTGAA+GGG | - | chr7_1:52589145-52589164 | Msa1024100:intron | 40.0% |
| !! | AAGCAGTTTTGTAGTGTTGG+TGG | - | chr7_1:52589180-52589199 | Msa1024100:intron | 40.0% |
| !!! | AGCAGTTTTGTAGTGTTGGT+GGG | - | chr7_1:52589181-52589200 | Msa1024100:intron | 40.0% |
| ! | GGCTGATGATTTTCAACTTC+AGG | + | chr7_1:52589443-52589462 | None:intergenic | 40.0% |
| GACTTCAGAGTTTAGACTGA+AGG | + | chr7_1:52589876-52589895 | None:intergenic | 40.0% | |
| !! | TCAGTCTAAACTCTGAAGTC+CGG | - | chr7_1:52589876-52589895 | Msa1024100:CDS | 40.0% |
| AGCCAAAGAAGCAAAAACAC+TGG | + | chr7_1:52589985-52590004 | None:intergenic | 40.0% | |
| GACCCAACAAAAATTGCCTA+TGG | + | chr7_1:52590041-52590060 | None:intergenic | 40.0% | |
| ! | GGTCTGAAAAAGTATGGCAA+GGG | - | chr7_1:52590057-52590076 | Msa1024100:CDS | 40.0% |
| GATTGACCACTGTGATATCA+TGG | + | chr7_1:52590206-52590225 | None:intergenic | 40.0% | |
| AAGTAACGATCCTTCTTCTC+TGG | - | chr7_1:52590254-52590273 | Msa1024100:five_prime_UTR | 40.0% | |
| GATTTGCAACCTTCACCAAA+TGG | + | chr7_1:52590281-52590300 | None:intergenic | 40.0% | |
| AAATTCCTGCTTAACCATGC+TGG | + | chr7_1:52590325-52590344 | None:intergenic | 40.0% | |
| TGGTTAAGCAGGAATTTGAC+TGG | - | chr7_1:52590328-52590347 | Msa1024100:five_prime_UTR | 40.0% | |
| GACTGGAAATTACCAGATGA+AGG | - | chr7_1:52590345-52590364 | Msa1024100:five_prime_UTR | 40.0% | |
| TCACAAGAATCGAAATCACC+GGG | - | chr7_1:52590432-52590451 | Msa1024100:five_prime_UTR | 40.0% | |
| TATGCAGCATCAATGAACTG+AGG | - | chr7_1:52590527-52590546 | Msa1024100:five_prime_UTR | 40.0% | |
| AAGAGAGAGAGAGGTCAAAG+GGG | + | chr7_1:52588183-52588202 | None:intergenic | 45.0% | |
| GAAAGAGAGAGAGAGGTCAA+AGG | + | chr7_1:52588185-52588204 | None:intergenic | 45.0% | |
| GCAACCCTTATCCATCTATC+AGG | + | chr7_1:52589000-52589019 | None:intergenic | 45.0% | |
| !! | AGTGTTGGTGGGAAAAGAAG+TGG | - | chr7_1:52589192-52589211 | Msa1024100:intron | 45.0% |
| GGAAAAGAAGTGGTTCGACT+CGG | - | chr7_1:52589202-52589221 | Msa1024100:intron | 45.0% | |
| ! | AAAGGAAGAAAGGTGTGCCA+TGG | - | chr7_1:52589238-52589257 | Msa1024100:intron | 45.0% |
| TACACGTTTCGGTTTCGTGT+CGG | - | chr7_1:52589830-52589849 | Msa1024100:CDS | 45.0% | |
| !! | CAGTCTAAACTCTGAAGTCC+GGG | - | chr7_1:52589877-52589896 | Msa1024100:CDS | 45.0% |
| !! | AGTCTAAACTCTGAAGTCCG+GGG | - | chr7_1:52589878-52589897 | Msa1024100:CDS | 45.0% |
| ! | GGGTCTGAAAAAGTATGGCA+AGG | - | chr7_1:52590056-52590075 | Msa1024100:CDS | 45.0% |
| ! | AAAAGTATGGCAAGGGAGAC+TGG | - | chr7_1:52590064-52590083 | Msa1024100:CDS | 45.0% |
| GAGACTGGAGAAACATCTCT+AGG | - | chr7_1:52590079-52590098 | Msa1024100:CDS | 45.0% | |
| !! | GACTTGAGTTGGTGTTCTTG+TGG | + | chr7_1:52590115-52590134 | None:intergenic | 45.0% |
| TTCATTAGGCAGCTTTCAGG+AGG | - | chr7_1:52590156-52590175 | Msa1024100:CDS | 45.0% | |
| TCATTAGGCAGCTTTCAGGA+GGG | - | chr7_1:52590157-52590176 | Msa1024100:CDS | 45.0% | |
| TTTCAGGAGGGAAGGATAAG+AGG | - | chr7_1:52590169-52590188 | Msa1024100:CDS | 45.0% | |
| ACGAAGGCGGTTTCATTTCT+TGG | + | chr7_1:52590230-52590249 | None:intergenic | 45.0% | |
| ! | TCGTTACTTTCTGACGAAGG+CGG | + | chr7_1:52590243-52590262 | None:intergenic | 45.0% |
| ! | GGATCGTTACTTTCTGACGA+AGG | + | chr7_1:52590246-52590265 | None:intergenic | 45.0% |
| TCCTTCTTCTCTGGACCATT+TGG | - | chr7_1:52590263-52590282 | Msa1024100:five_prime_UTR | 45.0% | |
| ACCAAATGGTCCAGAGAAGA+AGG | + | chr7_1:52590267-52590286 | None:intergenic | 45.0% | |
| ! | TTCTCTGGACCATTTGGTGA+AGG | - | chr7_1:52590269-52590288 | Msa1024100:five_prime_UTR | 45.0% |
| TTTGTCCAGCATGGTTAAGC+AGG | - | chr7_1:52590317-52590336 | Msa1024100:five_prime_UTR | 45.0% | |
| ACAAATGGCATGCCTTCATC+TGG | + | chr7_1:52590360-52590379 | None:intergenic | 45.0% | |
| CACAAGAATCGAAATCACCG+GGG | - | chr7_1:52590433-52590452 | Msa1024100:five_prime_UTR | 45.0% | |
| ! | GTACTACGAAGCACTCATCA+TGG | - | chr7_1:52590462-52590481 | Msa1024100:five_prime_UTR | 45.0% |
| GAGGATCTTCCTACATAGAG+TGG | - | chr7_1:52590720-52590739 | Msa1024100:five_prime_UTR | 45.0% | |
| !! | TATTAATAATTAATAAATTC+TGG | - | chr7_1:52588605-52588624 | Msa1024100:CDS | 5.0% |
| CAAAGGGGGTGAGTTGTGAT+TGG | + | chr7_1:52588168-52588187 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGGTCAAAGG+GGG | + | chr7_1:52588182-52588201 | None:intergenic | 50.0% | |
| AGGGTTGCTGAGATGATTCC+TGG | - | chr7_1:52589012-52589031 | Msa1024100:CDS | 50.0% | |
| !! | GCTGGTTTGATACCAGTTCC+TGG | - | chr7_1:52589099-52589118 | Msa1024100:intron | 50.0% |
| TTCTTCCTTTCCTGCTCCGA+CGG | + | chr7_1:52589228-52589247 | None:intergenic | 50.0% | |
| TCGGAGCAGGAAAGGAAGAA+AGG | - | chr7_1:52589228-52589247 | Msa1024100:intron | 50.0% | |
| CTATGCTCCTCTTCAGTCCA+TGG | + | chr7_1:52589258-52589277 | None:intergenic | 50.0% | |
| ! | CATGGACTGAAGAGGAGCAT+AGG | - | chr7_1:52589256-52589275 | Msa1024100:intron | 50.0% |
| ! | TTTCGGTTTCGTGTCGGCAT+TGG | - | chr7_1:52589836-52589855 | Msa1024100:CDS | 50.0% |
| ! | GCATGACTTGCGACTTGAGT+TGG | + | chr7_1:52590126-52590145 | None:intergenic | 50.0% |
| TGTGAAGAAATCCCGCACGA+CGG | + | chr7_1:52590417-52590436 | None:intergenic | 50.0% | |
| CTTCGTAGTACATTACGCCC+CGG | + | chr7_1:52590453-52590472 | None:intergenic | 50.0% | |
| GCAGCATCAATGAACTGAGG+AGG | - | chr7_1:52590530-52590549 | Msa1024100:five_prime_UTR | 50.0% | |
| AGGGGGTGAGTTGTGATTGG+TGG | + | chr7_1:52588165-52588184 | None:intergenic | 55.0% | |
| ! | AGGTGTGCCATGGACTGAAG+AGG | - | chr7_1:52589248-52589267 | Msa1024100:intron | 55.0% |
| TAGGCAGCTTTCAGGAGGGA+AGG | - | chr7_1:52590161-52590180 | Msa1024100:CDS | 55.0% | |
| ATGTTTGTGGCACCGTCGTG+CGG | - | chr7_1:52590402-52590421 | Msa1024100:five_prime_UTR | 55.0% | |
| !! | AAGTGGTTCGACTCGGCCGT+CGG | - | chr7_1:52589209-52589228 | Msa1024100:intron | 60.0% |
| TGTTTGTGGCACCGTCGTGC+GGG | - | chr7_1:52590403-52590422 | Msa1024100:five_prime_UTR | 60.0% | |
| !! | TTCGACTCGGCCGTCGGAGC+AGG | - | chr7_1:52589215-52589234 | Msa1024100:intron | 70.0% |
| CTCGGCCGTCGGAGCAGGAA+AGG | - | chr7_1:52589220-52589239 | Msa1024100:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 52588158 | 52590928 | 52588158 | ID=Msa1024100;Name=Msa1024100 |
| chr7_1 | mRNA | 52588158 | 52590928 | 52588158 | ID=Msa1024100-mRNA-1;Parent=Msa1024100;Name=Msa1024100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=677|1|1|1|1|1|2|386|313 |
| chr7_1 | exon | 52588158 | 52589042 | 52588158 | ID=Msa1024100-mRNA-1:exon:10463;Parent=Msa1024100-mRNA-1 |
| chr7_1 | exon | 52589809 | 52590928 | 52589809 | ID=Msa1024100-mRNA-1:exon:10462;Parent=Msa1024100-mRNA-1 |
| chr7_1 | five_prime_UTR | 52590252 | 52590928 | 52590252 | ID=Msa1024100-mRNA-1:five_prime_utr;Parent=Msa1024100-mRNA-1 |
| chr7_1 | CDS | 52589809 | 52590251 | 52589809 | ID=Msa1024100-mRNA-1:cds;Parent=Msa1024100-mRNA-1 |
| chr7_1 | CDS | 52588544 | 52589042 | 52588544 | ID=Msa1024100-mRNA-1:cds;Parent=Msa1024100-mRNA-1 |
| chr7_1 | three_prime_UTR | 52588158 | 52588543 | 52588158 | ID=Msa1024100-mRNA-1:three_prime_utr;Parent=Msa1024100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
