Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342680 | AES67352.2 | 88.542 | 288 | 31 | 1 | 1 | 286 | 6 | 293 | 8.61e-175 | 505 |
| Msa0342680 | AES67352.2 | 92.632 | 95 | 7 | 0 | 283 | 377 | 363 | 457 | 4.38e-40 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342680 | sp|Q9ZWB4|3AT1_ARATH | 39.636 | 275 | 146 | 9 | 18 | 286 | 9 | 269 | 1.94e-49 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342680 | G7IRP3 | 88.542 | 288 | 31 | 1 | 1 | 286 | 6 | 293 | 4.11e-175 | 505 |
| Msa0342680 | G7IRP3 | 92.632 | 95 | 7 | 0 | 283 | 377 | 363 | 457 | 2.09e-40 | 159 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030710 | Msa0342680 | 0.804256 | 2.356781e-49 | -8.615850e-47 |
| Msa0144510 | Msa0342680 | 0.818083 | 2.358344e-52 | -8.615850e-47 |
| Msa0194370 | Msa0342680 | 0.812757 | 3.610960e-51 | -8.615850e-47 |
| Msa0219140 | Msa0342680 | 0.827935 | 1.188544e-54 | -8.615850e-47 |
| Msa0258960 | Msa0342680 | 0.828107 | 1.080083e-54 | -8.615850e-47 |
| Msa0261390 | Msa0342680 | 0.916172 | 2.450561e-85 | -8.615850e-47 |
| Msa0285710 | Msa0342680 | 0.817962 | 2.512336e-52 | -8.615850e-47 |
| Msa0314620 | Msa0342680 | 0.802992 | 4.311307e-49 | -8.615850e-47 |
| Msa0342680 | Msa0384130 | 0.812055 | 5.138195e-51 | -8.615850e-47 |
| Msa0342680 | Msa0478750 | 0.838418 | 2.910513e-57 | -8.615850e-47 |
| Msa0342680 | Msa0522830 | 0.825685 | 4.096266e-54 | -8.615850e-47 |
| Msa0342680 | Msa0622070 | -0.800712 | 1.267532e-48 | -8.615850e-47 |
| Msa0342680 | Msa0933050 | 0.803059 | 4.175967e-49 | -8.615850e-47 |
| Msa0342680 | Msa1084340 | 0.807798 | 4.239546e-50 | -8.615850e-47 |
| Msa0342680 | Msa1192790 | 0.810523 | 1.105118e-50 | -8.615850e-47 |
| Msa0342680 | Msa1203090 | 0.820008 | 8.605329e-53 | -8.615850e-47 |
| Msa0342680 | Msa1235960 | 0.813284 | 2.766806e-51 | -8.615850e-47 |
| Msa0342680 | Msa1235990 | 0.813594 | 2.365005e-51 | -8.615850e-47 |
| Msa0342680 | Msa1304980 | -0.827726 | 1.334459e-54 | -8.615850e-47 |
| Msa0342680 | Msa1316090 | 0.811170 | 8.004705e-51 | -8.615850e-47 |
| Msa0342680 | Msa1327400 | 0.812362 | 4.405261e-51 | -8.615850e-47 |
| Msa0342680 | Msa1327420 | 0.815714 | 8.024381e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342680 | MtrunA17_Chr2g0323471 | 88.542 | 288 | 31 | 1 | 1 | 286 | 6 | 293 | 7.92e-179 | 505 |
| Msa0342680 | MtrunA17_Chr2g0323471 | 92.632 | 95 | 7 | 0 | 283 | 377 | 363 | 457 | 4.03e-44 | 159 |
| Msa0342680 | MtrunA17_Chr2g0323511 | 73.333 | 285 | 64 | 5 | 5 | 286 | 10 | 285 | 5.59e-145 | 420 |
| Msa0342680 | MtrunA17_Chr2g0323511 | 66.667 | 108 | 36 | 0 | 270 | 377 | 355 | 462 | 9.41e-39 | 144 |
| Msa0342680 | MtrunA17_Chr8g0339641 | 64.855 | 276 | 87 | 7 | 15 | 285 | 1 | 271 | 5.33e-117 | 348 |
| Msa0342680 | MtrunA17_Chr8g0339641 | 72.043 | 93 | 23 | 2 | 288 | 377 | 360 | 452 | 1.20e-27 | 113 |
| Msa0342680 | MtrunA17_Chr2g0323441 | 82.759 | 174 | 30 | 0 | 17 | 190 | 2 | 175 | 1.34e-103 | 303 |
| Msa0342680 | MtrunA17_Chr3g0083761 | 47.601 | 271 | 126 | 6 | 17 | 286 | 5 | 260 | 1.18e-74 | 239 |
| Msa0342680 | MtrunA17_Chr3g0083761 | 40.000 | 100 | 57 | 2 | 280 | 377 | 343 | 441 | 3.60e-13 | 70.5 |
| Msa0342680 | MtrunA17_Chr7g0219881 | 43.155 | 336 | 168 | 9 | 17 | 347 | 5 | 322 | 4.44e-74 | 237 |
| Msa0342680 | MtrunA17_Chr7g0219881 | 40.816 | 98 | 48 | 2 | 280 | 377 | 353 | 440 | 9.15e-13 | 69.3 |
| Msa0342680 | MtrunA17_Chr7g0219331 | 34.842 | 442 | 191 | 15 | 18 | 373 | 98 | 528 | 1.36e-55 | 191 |
| Msa0342680 | MtrunA17_Chr6g0455361 | 30.283 | 459 | 216 | 11 | 1 | 377 | 1 | 437 | 2.15e-52 | 180 |
| Msa0342680 | MtrunA17_Chr3g0087901 | 37.778 | 270 | 159 | 6 | 17 | 285 | 8 | 269 | 4.61e-46 | 164 |
| Msa0342680 | MtrunA17_Chr2g0323421 | 36.268 | 284 | 146 | 10 | 17 | 287 | 55 | 316 | 3.32e-45 | 162 |
| Msa0342680 | MtrunA17_Chr3g0092011 | 36.519 | 293 | 151 | 12 | 18 | 299 | 4 | 272 | 5.93e-43 | 150 |
| Msa0342680 | MtrunA17_Chr7g0219301 | 35.258 | 329 | 179 | 11 | 18 | 324 | 5 | 321 | 2.50e-42 | 157 |
| Msa0342680 | MtrunA17_Chr7g0219301 | 44.355 | 124 | 61 | 3 | 10 | 128 | 502 | 622 | 2.91e-23 | 101 |
| Msa0342680 | MtrunA17_Chr2g0323501 | 34.884 | 301 | 163 | 12 | 1 | 287 | 1 | 282 | 5.90e-41 | 150 |
| Msa0342680 | MtrunA17_Chr2g0323501 | 41.176 | 85 | 49 | 1 | 288 | 372 | 369 | 452 | 5.85e-11 | 63.9 |
| Msa0342680 | MtrunA17_Chr3g0124341 | 35.971 | 278 | 160 | 9 | 18 | 287 | 10 | 277 | 2.19e-40 | 149 |
| Msa0342680 | MtrunA17_Chr6g0455341 | 42.564 | 195 | 98 | 5 | 18 | 209 | 9 | 192 | 1.88e-38 | 143 |
| Msa0342680 | MtrunA17_Chr2g0323481 | 34.979 | 243 | 138 | 8 | 54 | 287 | 39 | 270 | 4.00e-37 | 139 |
| Msa0342680 | MtrunA17_Chr6g0455351 | 29.594 | 419 | 218 | 15 | 16 | 377 | 7 | 405 | 1.05e-35 | 135 |
| Msa0342680 | MtrunA17_Chr6g0454761 | 33.333 | 270 | 158 | 8 | 25 | 286 | 14 | 269 | 1.67e-31 | 126 |
| Msa0342680 | MtrunA17_Chr6g0454761 | 30.453 | 243 | 148 | 6 | 52 | 286 | 527 | 756 | 4.49e-24 | 104 |
| Msa0342680 | MtrunA17_Chr6g0454761 | 35.043 | 117 | 70 | 2 | 261 | 377 | 812 | 922 | 1.35e-15 | 78.6 |
| Msa0342680 | MtrunA17_Chr7g0219291 | 33.447 | 293 | 160 | 12 | 12 | 289 | 351 | 623 | 1.10e-30 | 124 |
| Msa0342680 | MtrunA17_Chr7g0219241 | 30.584 | 291 | 177 | 8 | 12 | 290 | 4 | 281 | 1.48e-30 | 121 |
| Msa0342680 | MtrunA17_Chr7g0219241 | 35.165 | 91 | 58 | 1 | 288 | 377 | 363 | 453 | 7.74e-12 | 66.6 |
| Msa0342680 | MtrunA17_Chr7g0219181 | 34.307 | 274 | 153 | 9 | 29 | 287 | 18 | 279 | 1.35e-29 | 119 |
| Msa0342680 | MtrunA17_Chr7g0219181 | 37.500 | 96 | 54 | 2 | 286 | 377 | 362 | 455 | 6.94e-14 | 72.8 |
| Msa0342680 | MtrunA17_Chr7g0219211 | 31.271 | 291 | 167 | 12 | 17 | 290 | 9 | 283 | 3.74e-29 | 115 |
| Msa0342680 | MtrunA17_Chr7g0219191 | 32.093 | 215 | 133 | 5 | 36 | 246 | 15 | 220 | 2.04e-25 | 102 |
| Msa0342680 | MtrunA17_Chr2g0323461 | 81.132 | 53 | 10 | 0 | 320 | 372 | 2 | 54 | 3.03e-25 | 97.1 |
| Msa0342680 | MtrunA17_Chr7g0219251 | 38.547 | 179 | 95 | 6 | 17 | 191 | 7 | 174 | 1.73e-24 | 99.0 |
| Msa0342680 | MtrunA17_Chr6g0454741 | 27.083 | 288 | 138 | 8 | 88 | 375 | 22 | 237 | 4.06e-24 | 99.4 |
| Msa0342680 | MtrunA17_Chr7g0219121 | 29.352 | 293 | 166 | 11 | 17 | 287 | 8 | 281 | 6.03e-23 | 100 |
| Msa0342680 | MtrunA17_Chr7g0219121 | 35.484 | 93 | 60 | 0 | 284 | 376 | 364 | 456 | 2.80e-12 | 67.8 |
| Msa0342680 | MtrunA17_Chr2g0323491 | 78.723 | 47 | 10 | 0 | 323 | 369 | 3 | 49 | 3.88e-20 | 84.0 |
| Msa0342680 | MtrunA17_Chr7g0219351 | 30.097 | 206 | 130 | 5 | 86 | 286 | 14 | 210 | 6.97e-20 | 87.8 |
| Msa0342680 | MtrunA17_Chr7g0219101 | 35.106 | 94 | 61 | 0 | 284 | 377 | 317 | 410 | 1.84e-12 | 68.2 |
| Msa0342680 | MtrunA17_Chr7g0219311 | 38.710 | 93 | 48 | 3 | 286 | 373 | 51 | 139 | 6.15e-12 | 63.2 |
| Msa0342680 | MtrunA17_Chr7g0219221 | 35.165 | 91 | 58 | 1 | 288 | 377 | 48 | 138 | 2.48e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342680 | AT1G03940.1 | 39.636 | 275 | 146 | 9 | 18 | 286 | 9 | 269 | 1.97e-50 | 176 |
| Msa0342680 | AT1G03940.1 | 34.831 | 89 | 58 | 0 | 289 | 377 | 356 | 444 | 5.90e-11 | 64.3 |
| Msa0342680 | AT1G03495.1 | 36.025 | 322 | 178 | 11 | 19 | 323 | 10 | 320 | 4.19e-49 | 169 |
| Msa0342680 | AT5G61160.1 | 26.818 | 440 | 235 | 13 | 15 | 377 | 1 | 430 | 3.68e-33 | 129 |
| Msa0342680 | AT3G29670.1 | 35.842 | 279 | 156 | 11 | 15 | 285 | 1 | 264 | 4.91e-33 | 128 |
| Msa0342680 | AT5G39080.1 | 30.686 | 277 | 166 | 11 | 16 | 281 | 4 | 265 | 5.08e-27 | 112 |
| Msa0342680 | AT3G29680.1 | 30.627 | 271 | 169 | 8 | 15 | 281 | 1 | 256 | 2.78e-23 | 101 |
| Msa0342680 | AT3G29635.1 | 31.273 | 275 | 165 | 9 | 15 | 280 | 1 | 260 | 5.07e-23 | 100 |
| Msa0342680 | AT5G39090.1 | 30.292 | 274 | 159 | 9 | 16 | 280 | 4 | 254 | 7.14e-22 | 97.1 |
| Msa0342680 | AT5G39090.1 | 36.667 | 90 | 56 | 1 | 288 | 377 | 339 | 427 | 5.45e-11 | 64.3 |
| Msa0342680 | AT3G29590.1 | 36.170 | 188 | 100 | 8 | 16 | 199 | 7 | 178 | 8.94e-22 | 96.7 |
| Msa0342680 | AT3G29590.1 | 50.000 | 56 | 28 | 0 | 322 | 377 | 373 | 428 | 7.05e-12 | 67.0 |
| Msa0342680 | AT5G39050.1 | 32.420 | 219 | 133 | 7 | 16 | 233 | 9 | 213 | 2.07e-17 | 84.0 |
| Msa0342680 | AT5G39050.1 | 34.444 | 90 | 58 | 1 | 288 | 377 | 359 | 447 | 7.56e-12 | 67.0 |
Find 90 sgRNAs with CRISPR-Local
Find 503 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTTCTTTGACATTTCT+TGG | 0.109669 | 3_1:-597880 | Msa0342680:CDS |
| AACTCTGTTAAAATGGTTTC+TGG | 0.155098 | 3_1:-590898 | Msa0342680:CDS |
| ACCAGGTAACTCTGTTAAAA+TGG | 0.224927 | 3_1:-590905 | Msa0342680:CDS |
| GGAGGGGTGTTATGGGAATT+TGG | 0.229278 | 3_1:+597704 | None:intergenic |
| GGTAGAAGAAGATGCGTTTA+AGG | 0.233797 | 3_1:+597840 | None:intergenic |
| GATGTTTATGAGACTGATTT+TGG | 0.265860 | 3_1:-590862 | Msa0342680:CDS |
| ATTCACAAGATGCTCTAAAT+TGG | 0.287826 | 3_1:-597601 | Msa0342680:CDS |
| GTTGGTGATGGAAGTGAATT+TGG | 0.295109 | 3_1:+597914 | None:intergenic |
| TGCACTACATCAGATTTCTT+TGG | 0.324816 | 3_1:+590829 | None:intergenic |
| TCTTGTAAGTAGGTGAGTTT+AGG | 0.364713 | 3_1:+597299 | None:intergenic |
| GTTGTTGTTTGCTATAGCTT+TGG | 0.366415 | 3_1:+597394 | None:intergenic |
| GTATATAAGGAGGGGTGTTA+TGG | 0.371162 | 3_1:+597696 | None:intergenic |
| GAAGAAGTGTTGGAGGGTTA+AGG | 0.375241 | 3_1:+597754 | None:intergenic |
| TTTATTATTTCCCTACAATC+AGG | 0.389787 | 3_1:+590928 | None:intergenic |
| GTATGAGGTGAAGGCAAGTT+AGG | 0.400483 | 3_1:+597566 | None:intergenic |
| CATACAGAGAAGCCAAAGTT+TGG | 0.413553 | 3_1:+597488 | None:intergenic |
| ATCACCATTCTACCAAACTT+TGG | 0.418677 | 3_1:-597500 | Msa0342680:CDS |
| TATATAAGGAGGGGTGTTAT+GGG | 0.421407 | 3_1:+597697 | None:intergenic |
| TCATCAAGGTATCGTATATA+AGG | 0.422149 | 3_1:+597683 | None:intergenic |
| ATTTGGAGGGATGATGAGGT+TGG | 0.424629 | 3_1:+597721 | None:intergenic |
| GGAAAGTGAGTGTTTGAGAA+TGG | 0.424878 | 3_1:+597775 | None:intergenic |
| GATGAGTTGGATGTGGAAAA+TGG | 0.428885 | 3_1:+597819 | None:intergenic |
| GATGATGAGGTTGGAGGTGA+AGG | 0.429029 | 3_1:+597730 | None:intergenic |
| TTTAAGAGTGATGCTTTGTT+GGG | 0.435490 | 3_1:-590967 | Msa0342680:CDS |
| TCTCTTTCTGATTGTAGAGA+TGG | 0.439448 | 3_1:-590784 | Msa0342680:CDS |
| GTCTCATAAACATCAAGTTT+AGG | 0.448315 | 3_1:+590871 | None:intergenic |
| TGAGAATGGGAAGTGTTGTT+TGG | 0.450918 | 3_1:+597789 | None:intergenic |
| GTAGAAGAAGATGCGTTTAA+GGG | 0.457685 | 3_1:+597841 | None:intergenic |
| GAAGCCAAAGTTTGGTAGAA+TGG | 0.464986 | 3_1:+597496 | None:intergenic |
| ACTCTGTTAAAATGGTTTCT+GGG | 0.468209 | 3_1:-590897 | Msa0342680:CDS |
| GAAAGTGAGTGTTTGAGAAT+GGG | 0.469129 | 3_1:+597776 | None:intergenic |
| AAACGTTGATGCCTGATTGT+AGG | 0.470765 | 3_1:-590939 | Msa0342680:CDS |
| CTTTCTGATTGTAGAGATGG+TGG | 0.471103 | 3_1:-590781 | Msa0342680:CDS |
| AGGTGAAGGGGAAGAAGTGT+TGG | 0.471582 | 3_1:+597744 | None:intergenic |
| AAAGAAAGTGAGAGGGAGAA+TGG | 0.474809 | 3_1:+597892 | None:intergenic |
| GGTGGAGGTGGAATTGAAGT+TGG | 0.477895 | 3_1:-590763 | None:intergenic |
| GGGAATTTGGAGGGATGATG+AGG | 0.494796 | 3_1:+597717 | None:intergenic |
| GAAGAAGATGCGTTTAAGGG+GGG | 0.500670 | 3_1:+597844 | None:intergenic |
| ATCAGAAAGAGAAATCGAAC+TGG | 0.507399 | 3_1:+590795 | None:intergenic |
| AAAGTGAGAGGGAGAATGGT+TGG | 0.508062 | 3_1:+597896 | None:intergenic |
| TAGAAGAAGATGCGTTTAAG+GGG | 0.508756 | 3_1:+597842 | None:intergenic |
| GGTGATGGAAGTGAATTTGG+TGG | 0.516073 | 3_1:+597917 | None:intergenic |
| TGGTAGAATGGTGATTTGAA+TGG | 0.518937 | 3_1:+597508 | None:intergenic |
| TAGGTGAGTTTAGGATCCGT+TGG | 0.520040 | 3_1:+597308 | None:intergenic |
| TGATGAGGTTGGAGGTGAAG+GGG | 0.522375 | 3_1:+597732 | None:intergenic |
| GGGGTGTTATGGGAATTTGG+AGG | 0.522455 | 3_1:+597707 | None:intergenic |
| TGAAGGGGAAGAAGTGTTGG+AGG | 0.527422 | 3_1:+597747 | None:intergenic |
| TAACGAAACAATAACTATGA+AGG | 0.528554 | 3_1:-597966 | Msa0342680:CDS |
| ATGATGAGGTTGGAGGTGAA+GGG | 0.530666 | 3_1:+597731 | None:intergenic |
| AGAGGGAGAATGGTTGGTGA+TGG | 0.530934 | 3_1:+597902 | None:intergenic |
| AGAAGAAGATGCGTTTAAGG+GGG | 0.531371 | 3_1:+597843 | None:intergenic |
| AGGTGAGTTTAGGATCCGTT+GGG | 0.537324 | 3_1:+597309 | None:intergenic |
| AACGTTGATGCCTGATTGTA+GGG | 0.537408 | 3_1:-590938 | Msa0342680:CDS |
| TTTAAACACGTTGTTGCAGA+CGG | 0.540631 | 3_1:-597458 | Msa0342680:CDS |
| GATTGTAGAGATGGTGGAGG+TGG | 0.541712 | 3_1:-590775 | Msa0342680:CDS |
| TGGAGGGATGATGAGGTTGG+AGG | 0.545689 | 3_1:+597724 | None:intergenic |
| GTTTGGAGGAAGTGATGAGT+TGG | 0.551364 | 3_1:+597806 | None:intergenic |
| TACATGTATCGTTCCTCCCA+TGG | 0.552237 | 3_1:-597531 | Msa0342680:CDS |
| AATCTATCTCTTTCATGAGA+AGG | 0.553262 | 3_1:+597341 | None:intergenic |
| AAGAAGATGCGTTTAAGGGG+GGG | 0.554836 | 3_1:+597845 | None:intergenic |
| AATGGTGATTTGAATGGCCA+TGG | 0.561171 | 3_1:+597514 | None:intergenic |
| TGGAAAAGACGGTATTGTTG+TGG | 0.564685 | 3_1:-591022 | Msa0342680:intron |
| GAAATGTCAAAGAAAGTGAG+AGG | 0.565539 | 3_1:+597884 | None:intergenic |
| AGGAAGTGATGAGTTGGATG+TGG | 0.573881 | 3_1:+597812 | None:intergenic |
| TGCATCTCGAACGAGACTTG+TGG | 0.575560 | 3_1:+597244 | None:intergenic |
| CAAGGTATCGTATATAAGGA+GGG | 0.577627 | 3_1:+597687 | None:intergenic |
| AATTTGATCTCGTGATGTTG+AGG | 0.584229 | 3_1:+597995 | None:intergenic |
| AAATGTCAAAGAAAGTGAGA+GGG | 0.588095 | 3_1:+597885 | None:intergenic |
| TGGCAGCAAATGCTATTGAA+AGG | 0.588748 | 3_1:-591002 | Msa0342680:CDS |
| GGGTGTTATGGGAATTTGGA+GGG | 0.588819 | 3_1:+597708 | None:intergenic |
| TCAAGGTATCGTATATAAGG+AGG | 0.590972 | 3_1:+597686 | None:intergenic |
| GAATGGGAAGTGTTGTTTGG+AGG | 0.595204 | 3_1:+597792 | None:intergenic |
| TCACCTCATACAGAACAAAA+CGG | 0.603095 | 3_1:-597554 | Msa0342680:CDS |
| ATCTTGTATATCTTGTAAGT+AGG | 0.603551 | 3_1:+597289 | None:intergenic |
| TGAGGATTCAGCAATGGTGA+AGG | 0.609931 | 3_1:+597649 | None:intergenic |
| TCATGAGAAGGAAGATCAAG+AGG | 0.612643 | 3_1:+597353 | None:intergenic |
| GATGGAAGTGAATTTGGTGG+TGG | 0.624086 | 3_1:+597920 | None:intergenic |
| TCTGATTGTAGAGATGGTGG+AGG | 0.625713 | 3_1:-590778 | Msa0342680:CDS |
| TGAGAAGGAAGATCAAGAGG+TGG | 0.626715 | 3_1:+597356 | None:intergenic |
| GAAGGGGAAGAAGTGTTGGA+GGG | 0.639354 | 3_1:+597748 | None:intergenic |
| TAGATTACTAAAACACCCAA+CGG | 0.650878 | 3_1:-597324 | Msa0342680:CDS |
| AAGGCAAGTTAGGAACAAGA+TGG | 0.656225 | 3_1:+597576 | None:intergenic |
| GTCTGCTGAGGATTCAGCAA+TGG | 0.656353 | 3_1:+597643 | None:intergenic |
| AGGAGATAGAGTCTTCATCA+AGG | 0.656629 | 3_1:+597669 | None:intergenic |
| TAGTTTAGTATTGAGTCGTG+AGG | 0.661773 | 3_1:-597198 | Msa0342680:CDS |
| TGTAGGGAAATAATAAAACC+AGG | 0.671327 | 3_1:-590922 | Msa0342680:CDS |
| AAGGTATCGTATATAAGGAG+GGG | 0.677863 | 3_1:+597688 | None:intergenic |
| ATGGTGATTTGAATGGCCAT+GGG | 0.677866 | 3_1:+597515 | None:intergenic |
| GTGATTTGAATGGCCATGGG+AGG | 0.693316 | 3_1:+597518 | None:intergenic |
| GAGAATGTTGAAGTCTGCTG+AGG | 0.705294 | 3_1:+597631 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTTTAATTATATAACTT+TGG | + | chr3_1:593745-593764 | None:intergenic | 10.0% |
| !!! | TTTTTTGAAAAGAAAAAAAA+AGG | - | chr3_1:594646-594665 | Msa0342680:intron | 10.0% |
| !!! | AATTACTTCAATTTTTATTT+AGG | + | chr3_1:595158-595177 | None:intergenic | 10.0% |
| !!! | TTCATCATTTTATGAAATTT+TGG | - | chr3_1:591336-591355 | Msa0342680:intron | 15.0% |
| !!! | TCATCATTTTATGAAATTTT+GGG | - | chr3_1:591337-591356 | Msa0342680:intron | 15.0% |
| !!! | TAATACCATATTAATTTGAA+CGG | - | chr3_1:592625-592644 | Msa0342680:intron | 15.0% |
| !! | ACAAAACATAAAAAATTGTT+TGG | - | chr3_1:593280-593299 | Msa0342680:intron | 15.0% |
| !! | TCATATAAATTAGAATTTAG+AGG | - | chr3_1:593801-593820 | Msa0342680:intron | 15.0% |
| !!! | CTAGTTCTTAATTTTTAAAA+GGG | + | chr3_1:594328-594347 | None:intergenic | 15.0% |
| !!! | ACTAGTTCTTAATTTTTAAA+AGG | + | chr3_1:594329-594348 | None:intergenic | 15.0% |
| !!! | TTTTAAAAATTAAGAACTAG+TGG | - | chr3_1:594328-594347 | Msa0342680:intron | 15.0% |
| !! | TTTAAAAATTAAGAACTAGT+GGG | - | chr3_1:594329-594348 | Msa0342680:intron | 15.0% |
| !! | AAGTTAGATAATTATTTGAA+TGG | - | chr3_1:594941-594960 | Msa0342680:intron | 15.0% |
| !! | ATAAAAATTGAAGTAATTCT+TGG | - | chr3_1:595160-595179 | Msa0342680:intron | 15.0% |
| !! | ATTAAGAATCATTATTACAA+TGG | - | chr3_1:595792-595811 | Msa0342680:intron | 15.0% |
| !!! | TAATACCATATTAATTTGAA+CGG | - | chr3_1:592625-592644 | Msa0342680:intron | 15.0% |
| !!! | AGATATACAAGATTTTGTAT+TGG | - | chr3_1:591484-591503 | Msa0342680:intron | 20.0% |
| !!! | CAATTTCCAAAATAAGTTTT+CGG | + | chr3_1:591773-591792 | None:intergenic | 20.0% |
| !!! | AAACTTATTTTGGAAATTGT+TGG | - | chr3_1:591774-591793 | Msa0342680:intron | 20.0% |
| !! | TTAATTCTAGTGAAGAAAAT+TGG | - | chr3_1:591805-591824 | Msa0342680:intron | 20.0% |
| !! | TATATAAACACTTACTAGTT+GGG | + | chr3_1:591900-591919 | None:intergenic | 20.0% |
| !! | ATATATAAACACTTACTAGT+TGG | + | chr3_1:591901-591920 | None:intergenic | 20.0% |
| !! | AACTAGTAAGTGTTTATATA+TGG | - | chr3_1:591900-591919 | Msa0342680:intron | 20.0% |
| !! | ACTAGTAAGTGTTTATATAT+GGG | - | chr3_1:591901-591920 | Msa0342680:intron | 20.0% |
| !! | AAGAATCATATATTATCGAA+GGG | + | chr3_1:592412-592431 | None:intergenic | 20.0% |
| !! | TTCGATAATATATGATTCTT+CGG | - | chr3_1:592412-592431 | Msa0342680:intron | 20.0% |
| !!! | TATATTACTTTAAAGGGAAA+TGG | - | chr3_1:592494-592513 | Msa0342680:intron | 20.0% |
| !! | GTATTATTACCATTCTATTA+TGG | + | chr3_1:592611-592630 | None:intergenic | 20.0% |
| !! | ATTTATCCTTGATGTATTTA+GGG | + | chr3_1:593009-593028 | None:intergenic | 20.0% |
| !! | TTATTGCATATTTACAAGTT+TGG | + | chr3_1:593455-593474 | None:intergenic | 20.0% |
| !! | AAACTTGTAAATATGCAATA+AGG | - | chr3_1:593454-593473 | Msa0342680:intron | 20.0% |
| !! | TATGCAATAAGGAAAATAAA+TGG | - | chr3_1:593465-593484 | Msa0342680:intron | 20.0% |
| !!! | ATTTTAAAACTTGAGTAACT+TGG | - | chr3_1:593711-593730 | Msa0342680:intron | 20.0% |
| !!! | TTGTCTTATTTTTTGAACTT+GGG | - | chr3_1:594050-594069 | Msa0342680:intron | 20.0% |
| !! | TTAAAAATTAAGAACTAGTG+GGG | - | chr3_1:594330-594349 | Msa0342680:intron | 20.0% |
| !!! | ATTAAGGATATAGCTTTTTA+AGG | + | chr3_1:594510-594529 | None:intergenic | 20.0% |
| !! | TTAAAAAGCTATATCCTTAA+TGG | - | chr3_1:594509-594528 | Msa0342680:intron | 20.0% |
| !! | AGTAACATATTGTACTTAAA+TGG | - | chr3_1:595510-595529 | Msa0342680:intron | 20.0% |
| !!! | TAAGATTTGCTAATATACAA+AGG | + | chr3_1:596447-596466 | None:intergenic | 20.0% |
| !! | TTGTATATTAGCAAATCTTA+TGG | - | chr3_1:596447-596466 | Msa0342680:intron | 20.0% |
| !! | TTAATTCTAGTGAAGAAAAT+TGG | - | chr3_1:591805-591824 | Msa0342680:intron | 20.0% |
| !! | TATATAAACACTTACTAGTT+GGG | + | chr3_1:591900-591919 | None:intergenic | 20.0% |
| !! | ATATATAAACACTTACTAGT+TGG | + | chr3_1:591901-591920 | None:intergenic | 20.0% |
| !! | AACTAGTAAGTGTTTATATA+TGG | - | chr3_1:591900-591919 | Msa0342680:intron | 20.0% |
| !! | ACTAGTAAGTGTTTATATAT+GGG | - | chr3_1:591901-591920 | Msa0342680:intron | 20.0% |
| !! | AAGAATCATATATTATCGAA+GGG | + | chr3_1:592412-592431 | None:intergenic | 20.0% |
| !! | TTCGATAATATATGATTCTT+CGG | - | chr3_1:592412-592431 | Msa0342680:intron | 20.0% |
| !!! | TATATTACTTTAAAGGGAAA+TGG | - | chr3_1:592494-592513 | Msa0342680:intron | 20.0% |
| !! | GTATTATTACCATTCTATTA+TGG | + | chr3_1:592611-592630 | None:intergenic | 20.0% |
| ! | TAACGAAACAATAACTATGA+AGG | - | chr3_1:590797-590816 | Msa0342680:CDS | 25.0% |
| ! | ATCTTGTATATCTTGTAAGT+AGG | + | chr3_1:591477-591496 | None:intergenic | 25.0% |
| !! | AGATTTTGTATTGGAAATCA+TGG | - | chr3_1:591493-591512 | Msa0342680:intron | 25.0% |
| ! | AAGTTCAAAAAATGAAGAGA+TGG | - | chr3_1:591588-591607 | Msa0342680:intron | 25.0% |
| ! | AGTTCAAAAAATGAAGAGAT+GGG | - | chr3_1:591589-591608 | Msa0342680:intron | 25.0% |
| !! | TCATTACCGAAAACTTATTT+TGG | - | chr3_1:591764-591783 | Msa0342680:intron | 25.0% |
| ! | TATGAAAAAAACTAGTGTGT+GGG | - | chr3_1:591840-591859 | Msa0342680:intron | 25.0% |
| ! | ATATAAACACTTACTAGTTG+GGG | + | chr3_1:591899-591918 | None:intergenic | 25.0% |
| ! | GTTTCTTAATTGGATATATC+CGG | + | chr3_1:592130-592149 | None:intergenic | 25.0% |
| !!! | AACACGTTTTGTTTCTTAAT+TGG | + | chr3_1:592140-592159 | None:intergenic | 25.0% |
| !!! | GAAACTTGTTAAAAACAAGT+CGG | + | chr3_1:592310-592329 | None:intergenic | 25.0% |
| ! | GAAGAATCATATATTATCGA+AGG | + | chr3_1:592413-592432 | None:intergenic | 25.0% |
| ! | GAAATCCAAATTTAACAGTT+TGG | - | chr3_1:592906-592925 | Msa0342680:intron | 25.0% |
| ! | GATTTCCAAACTGTTAAATT+TGG | + | chr3_1:592914-592933 | None:intergenic | 25.0% |
| !!! | CGTCTTAAAATTGTTGTTTT+TGG | + | chr3_1:592936-592955 | None:intergenic | 25.0% |
| ! | GATTTATCCTTGATGTATTT+AGG | + | chr3_1:593010-593029 | None:intergenic | 25.0% |
| ! | TGTAACAAACTATACTTGTT+TGG | + | chr3_1:593263-593282 | None:intergenic | 25.0% |
| ! | ACATAAAAAATTGTTTGGAG+CGG | - | chr3_1:593285-593304 | Msa0342680:intron | 25.0% |
| !! | GAATTTTTGTCTTTAGACTT+GGG | + | chr3_1:593995-594014 | None:intergenic | 25.0% |
| !! | AGAATTTTTGTCTTTAGACT+TGG | + | chr3_1:593996-594015 | None:intergenic | 25.0% |
| ! | GTTCAAAAAATAAGACAAGT+TGG | + | chr3_1:594048-594067 | None:intergenic | 25.0% |
| !!! | CTTGTCTTATTTTTTGAACT+TGG | - | chr3_1:594049-594068 | Msa0342680:intron | 25.0% |
| ! | CGATAAATAACGAAACATAT+AGG | - | chr3_1:594157-594176 | Msa0342680:intron | 25.0% |
| ! | CTATGATCACTTTAACATTT+AGG | + | chr3_1:594191-594210 | None:intergenic | 25.0% |
| ! | TAAAAATTAAGAACTAGTGG+GGG | - | chr3_1:594331-594350 | Msa0342680:intron | 25.0% |
| ! | TATGAACTTGGTTTATACAA+TGG | - | chr3_1:594468-594487 | Msa0342680:intron | 25.0% |
| !!! | TATAGCTTTTTAAGGCTTAA+TGG | + | chr3_1:594502-594521 | None:intergenic | 25.0% |
| ! | AGAAACAATAAACGATGAAA+TGG | - | chr3_1:594548-594567 | Msa0342680:intron | 25.0% |
| !! | ATGTGAAAGTTGTCTTTTTA+TGG | - | chr3_1:594844-594863 | Msa0342680:intron | 25.0% |
| ! | CATGAATTGCAAAAAATTTC+AGG | + | chr3_1:594901-594920 | None:intergenic | 25.0% |
| !!! | CTGAAATTTTTTGCAATTCA+TGG | - | chr3_1:594899-594918 | Msa0342680:intron | 25.0% |
| !! | TTTAGAATACACCTATGAAA+AGG | - | chr3_1:596318-596337 | Msa0342680:intron | 25.0% |
| ! | TATGAAAAAAACTAGTGTGT+GGG | - | chr3_1:591840-591859 | Msa0342680:intron | 25.0% |
| ! | ATATAAACACTTACTAGTTG+GGG | + | chr3_1:591899-591918 | None:intergenic | 25.0% |
| ! | GTTTCTTAATTGGATATATC+CGG | + | chr3_1:592130-592149 | None:intergenic | 25.0% |
| !!! | AACACGTTTTGTTTCTTAAT+TGG | + | chr3_1:592140-592159 | None:intergenic | 25.0% |
| !!! | GAAACTTGTTAAAAACAAGT+CGG | + | chr3_1:592310-592329 | None:intergenic | 25.0% |
| ! | GAAGAATCATATATTATCGA+AGG | + | chr3_1:592413-592432 | None:intergenic | 25.0% |
| ! | GAAATCCAAATTTAACAGTT+TGG | - | chr3_1:592906-592925 | Msa0342680:intron | 25.0% |
| ! | GATTTCCAAACTGTTAAATT+TGG | + | chr3_1:592914-592933 | None:intergenic | 25.0% |
| !!! | AAGACAATTTCTGTTGTTTT+TGG | + | chr3_1:597683-597702 | None:intergenic | 25.0% |
| ! | TTTATTATTTCCCTACAATC+AGG | + | chr3_1:597838-597857 | None:intergenic | 25.0% |
| !!! | ATGTTTATGAGACTGATTTT+GGG | - | chr3_1:597902-597921 | Msa0342680:CDS | 25.0% |
| AAATGTCAAAGAAAGTGAGA+GGG | + | chr3_1:590881-590900 | None:intergenic | 30.0% | |
| TCACTTTCTTTGACATTTCT+TGG | - | chr3_1:590883-590902 | Msa0342680:CDS | 30.0% | |
| !! | TCATCAAGGTATCGTATATA+AGG | + | chr3_1:591083-591102 | None:intergenic | 30.0% |
| ! | ATTCACAAGATGCTCTAAAT+TGG | - | chr3_1:591162-591181 | Msa0342680:intron | 30.0% |
| AATCTATCTCTTTCATGAGA+AGG | + | chr3_1:591425-591444 | None:intergenic | 30.0% | |
| TAGATTACTAAAACACCCAA+CGG | - | chr3_1:591439-591458 | Msa0342680:intron | 30.0% | |
| TTGTAACATGTTCCTTGATT+TGG | - | chr3_1:591657-591676 | Msa0342680:intron | 30.0% | |
| !!! | TTCCTTGATTTGGTTTTGTA+TGG | - | chr3_1:591667-591686 | Msa0342680:intron | 30.0% |
| TACCATACAAAACCAAATCA+AGG | + | chr3_1:591672-591691 | None:intergenic | 30.0% | |
| ! | GTTTTCGGTAATGAAAATTC+AGG | + | chr3_1:591758-591777 | None:intergenic | 30.0% |
| CTATGAAAAAAACTAGTGTG+TGG | - | chr3_1:591839-591858 | Msa0342680:intron | 30.0% | |
| TTAAAAATGTCCCACATTGA+AGG | - | chr3_1:591869-591888 | Msa0342680:intron | 30.0% | |
| TAAAAATGTCCCACATTGAA+GGG | - | chr3_1:591870-591889 | Msa0342680:intron | 30.0% | |
| AAACAAAACGTGTTTGCTTA+AGG | - | chr3_1:592146-592165 | Msa0342680:intron | 30.0% | |
| TAACAAAAAACGAGTGACTT+GGG | + | chr3_1:592189-592208 | None:intergenic | 30.0% | |
| TTACAAACTCTCCCTATAAA+AGG | - | chr3_1:592206-592225 | Msa0342680:intron | 30.0% | |
| ! | TTCGGTGTAAAGAATCAAAT+GGG | + | chr3_1:592241-592260 | None:intergenic | 30.0% |
| ! | TTTCGGTGTAAAGAATCAAA+TGG | + | chr3_1:592242-592261 | None:intergenic | 30.0% |
| GAAGAGAAGAAAAAAAACAC+AGG | + | chr3_1:592282-592301 | None:intergenic | 30.0% | |
| ! | ATTACTTTAAAGGGAAATGG+TGG | - | chr3_1:592497-592516 | Msa0342680:intron | 30.0% |
| AAAACATGAATATGGCACTA+CGG | + | chr3_1:592542-592561 | None:intergenic | 30.0% | |
| ACTTCTCCAAAACATGAATA+TGG | + | chr3_1:592550-592569 | None:intergenic | 30.0% | |
| CGAAACCGTTCAAATTAATA+TGG | + | chr3_1:592633-592652 | None:intergenic | 30.0% | |
| AGAATTACACCCTCAAAATA+TGG | + | chr3_1:592705-592724 | None:intergenic | 30.0% | |
| ACCTCAATATGTAACTTCTT+CGG | + | chr3_1:592978-592997 | None:intergenic | 30.0% | |
| AAAACATTGATATCACGTAC+TGG | - | chr3_1:593374-593393 | Msa0342680:intron | 30.0% | |
| TGAAAAAGATTGCACTTTGA+TGG | - | chr3_1:593598-593617 | Msa0342680:intron | 30.0% | |
| CACACAACTAATAACATAGA+AGG | + | chr3_1:593645-593664 | None:intergenic | 30.0% | |
| ! | TTATTGATGACTGTGAACTT+TGG | - | chr3_1:593905-593924 | Msa0342680:intron | 30.0% |
| CCTGATGAATACATATTCAT+AGG | + | chr3_1:594133-594152 | None:intergenic | 30.0% | |
| CCTATGAATATGTATTCATC+AGG | - | chr3_1:594130-594149 | Msa0342680:intron | 30.0% | |
| CCACTATTCTTTAGTTAAAG+GGG | + | chr3_1:594249-594268 | None:intergenic | 30.0% | |
| CCCACTATTCTTTAGTTAAA+GGG | + | chr3_1:594250-594269 | None:intergenic | 30.0% | |
| CCCTTTAACTAAAGAATAGT+GGG | - | chr3_1:594247-594266 | Msa0342680:intron | 30.0% | |
| CCTTTAACTAAAGAATAGTG+GGG | - | chr3_1:594248-594267 | Msa0342680:intron | 30.0% | |
| CTTTAACTAAAGAATAGTGG+GGG | - | chr3_1:594249-594268 | Msa0342680:intron | 30.0% | |
| ! | ATTGCTAAAGAGTATGAACT+TGG | - | chr3_1:594456-594475 | Msa0342680:intron | 30.0% |
| AACTTGGTTTATACAATGGA+AGG | - | chr3_1:594472-594491 | Msa0342680:intron | 30.0% | |
| AAAAACCAAATACAACCGAT+TGG | + | chr3_1:594631-594650 | None:intergenic | 30.0% | |
| AAAAAGGAACTAAAACCTGA+TGG | - | chr3_1:594662-594681 | Msa0342680:intron | 30.0% | |
| TACTATCGAGTTATAAATGG+CGG | + | chr3_1:594814-594833 | None:intergenic | 30.0% | |
| GAGTACTATCGAGTTATAAA+TGG | + | chr3_1:594817-594836 | None:intergenic | 30.0% | |
| ACTAGAAGAACAAGTCTATA+TGG | - | chr3_1:594870-594889 | Msa0342680:intron | 30.0% | |
| AATTCATGGACAAGAAAACA+AGG | - | chr3_1:594913-594932 | Msa0342680:intron | 30.0% | |
| ! | AATTTTTCATGTCATTCCTC+AGG | + | chr3_1:594980-594999 | None:intergenic | 30.0% |
| TTAGAGTCATAGTCTTCTTA+AGG | + | chr3_1:595475-595494 | None:intergenic | 30.0% | |
| TTACAGAGTGTATCTCTAAA+TGG | - | chr3_1:595850-595869 | Msa0342680:intron | 30.0% | |
| ATCTATACTCTATGTTGAGT+GGG | - | chr3_1:596153-596172 | Msa0342680:intron | 30.0% | |
| CTATGAAAAAAACTAGTGTG+TGG | - | chr3_1:591839-591858 | Msa0342680:intron | 30.0% | |
| TTAAAAATGTCCCACATTGA+AGG | - | chr3_1:591869-591888 | Msa0342680:intron | 30.0% | |
| TAAAAATGTCCCACATTGAA+GGG | - | chr3_1:591870-591889 | Msa0342680:intron | 30.0% | |
| AAACAAAACGTGTTTGCTTA+AGG | - | chr3_1:592146-592165 | Msa0342680:intron | 30.0% | |
| TAACAAAAAACGAGTGACTT+GGG | + | chr3_1:592189-592208 | None:intergenic | 30.0% | |
| TTACAAACTCTCCCTATAAA+AGG | - | chr3_1:592206-592225 | Msa0342680:intron | 30.0% | |
| ! | TTCGGTGTAAAGAATCAAAT+GGG | + | chr3_1:592241-592260 | None:intergenic | 30.0% |
| ! | TTTCGGTGTAAAGAATCAAA+TGG | + | chr3_1:592242-592261 | None:intergenic | 30.0% |
| ! | ATTACTTTAAAGGGAAATGG+TGG | - | chr3_1:592497-592516 | Msa0342680:intron | 30.0% |
| AAAACATGAATATGGCACTA+CGG | + | chr3_1:592542-592561 | None:intergenic | 30.0% | |
| ACTTCTCCAAAACATGAATA+TGG | + | chr3_1:592550-592569 | None:intergenic | 30.0% | |
| !!! | ATGTTTTGGAGAAGTTAGAA+TGG | - | chr3_1:597301-597320 | Msa0342680:CDS | 30.0% |
| CGAAACCGTTCAAATTAATA+TGG | + | chr3_1:592633-592652 | None:intergenic | 30.0% | |
| AGAATTACACCCTCAAAATA+TGG | + | chr3_1:592705-592724 | None:intergenic | 30.0% | |
| TTGTCTTGCATCTTATATTG+TGG | - | chr3_1:597696-597715 | Msa0342680:CDS | 30.0% | |
| GTAAAGAGAGATGAGTTAAT+TGG | - | chr3_1:597721-597740 | Msa0342680:CDS | 30.0% | |
| GATGAGTTAATTGGAAAAGA+CGG | - | chr3_1:597730-597749 | Msa0342680:CDS | 30.0% | |
| !! | TTTTAAGAGTGATGCTTTGT+TGG | - | chr3_1:597795-597814 | Msa0342680:CDS | 30.0% |
| ! | TTTAAGAGTGATGCTTTGTT+GGG | - | chr3_1:597796-597815 | Msa0342680:CDS | 30.0% |
| TGTAGGGAAATAATAAAACC+AGG | - | chr3_1:597841-597860 | Msa0342680:CDS | 30.0% | |
| AACTCTGTTAAAATGGTTTC+TGG | - | chr3_1:597865-597884 | Msa0342680:CDS | 30.0% | |
| ACTCTGTTAAAATGGTTTCT+GGG | - | chr3_1:597866-597885 | Msa0342680:CDS | 30.0% | |
| GTCTCATAAACATCAAGTTT+AGG | + | chr3_1:597895-597914 | None:intergenic | 30.0% | |
| !! | GATGTTTATGAGACTGATTT+TGG | - | chr3_1:597901-597920 | Msa0342680:CDS | 30.0% |
| AATTTGATCTCGTGATGTTG+AGG | + | chr3_1:590771-590790 | None:intergenic | 35.0% | |
| GAAATGTCAAAGAAAGTGAG+AGG | + | chr3_1:590882-590901 | None:intergenic | 35.0% | |
| TAGAAGAAGATGCGTTTAAG+GGG | + | chr3_1:590924-590943 | None:intergenic | 35.0% | |
| GTAGAAGAAGATGCGTTTAA+GGG | + | chr3_1:590925-590944 | None:intergenic | 35.0% | |
| GAAAGTGAGTGTTTGAGAAT+GGG | + | chr3_1:590990-591009 | None:intergenic | 35.0% | |
| !! | TATATAAGGAGGGGTGTTAT+GGG | + | chr3_1:591069-591088 | None:intergenic | 35.0% |
| !! | AAGGTATCGTATATAAGGAG+GGG | + | chr3_1:591078-591097 | None:intergenic | 35.0% |
| !! | CAAGGTATCGTATATAAGGA+GGG | + | chr3_1:591079-591098 | None:intergenic | 35.0% |
| !! | TCAAGGTATCGTATATAAGG+AGG | + | chr3_1:591080-591099 | None:intergenic | 35.0% |
| ! | TTTTGTTCTGTATGAGGTGA+AGG | + | chr3_1:591209-591228 | None:intergenic | 35.0% |
| TCACCTCATACAGAACAAAA+CGG | - | chr3_1:591209-591228 | Msa0342680:intron | 35.0% | |
| TGGTAGAATGGTGATTTGAA+TGG | + | chr3_1:591258-591277 | None:intergenic | 35.0% | |
| ATCACCATTCTACCAAACTT+TGG | - | chr3_1:591263-591282 | Msa0342680:intron | 35.0% | |
| TTTAAACACGTTGTTGCAGA+CGG | - | chr3_1:591305-591324 | Msa0342680:intron | 35.0% | |
| !! | GTTGTTGTTTGCTATAGCTT+TGG | + | chr3_1:591372-591391 | None:intergenic | 35.0% |
| TCTTGTAAGTAGGTGAGTTT+AGG | + | chr3_1:591467-591486 | None:intergenic | 35.0% | |
| ! | TAGTTTAGTATTGAGTCGTG+AGG | - | chr3_1:591565-591584 | Msa0342680:intron | 35.0% |
| ACAACAAAAGTTGACATGTG+TGG | + | chr3_1:591641-591660 | None:intergenic | 35.0% | |
| ! | TTCTGGATATGCTTTTGGAT+CGG | + | chr3_1:592103-592122 | None:intergenic | 35.0% |
| !! | GAAGTTTCTGGATATGCTTT+TGG | + | chr3_1:592108-592127 | None:intergenic | 35.0% |
| AAAGCATATCCAGAAACTTC+CGG | - | chr3_1:592108-592127 | Msa0342680:intron | 35.0% | |
| AACAAAAAACGAGTGACTTG+GGG | + | chr3_1:592188-592207 | None:intergenic | 35.0% | |
| GTAACAAAAAACGAGTGACT+TGG | + | chr3_1:592190-592209 | None:intergenic | 35.0% | |
| TCGGTGTAAAGAATCAAATG+GGG | + | chr3_1:592240-592259 | None:intergenic | 35.0% | |
| !!! | AAGCATCGACTGTGAATTTT+CGG | + | chr3_1:592259-592278 | None:intergenic | 35.0% |
| CTTGTTAAAAACAAGTCGGA+GGG | + | chr3_1:592306-592325 | None:intergenic | 35.0% | |
| ! | ACTTGTTAAAAACAAGTCGG+AGG | + | chr3_1:592307-592326 | None:intergenic | 35.0% |
| AGAACACTCTTAATACCGAA+GGG | + | chr3_1:592355-592374 | None:intergenic | 35.0% | |
| AAGAACACTCTTAATACCGA+AGG | + | chr3_1:592356-592375 | None:intergenic | 35.0% | |
| GACTATGAACTTAAGACCAA+GGG | + | chr3_1:592390-592409 | None:intergenic | 35.0% | |
| ! | GTAGTGCCATATTCATGTTT+TGG | - | chr3_1:592541-592560 | Msa0342680:intron | 35.0% |
| !!! | ATGTTTTGGAGAAGTCAGAA+TGG | - | chr3_1:592555-592574 | Msa0342680:intron | 35.0% |
| GTGATAACACCATATTTGAG+TGG | - | chr3_1:592577-592596 | Msa0342680:intron | 35.0% | |
| ! | AACGATTGAGCCATATTTTG+AGG | - | chr3_1:592692-592711 | Msa0342680:intron | 35.0% |
| !! | ACGATTGAGCCATATTTTGA+GGG | - | chr3_1:592693-592712 | Msa0342680:intron | 35.0% |
| TTAATCGAACAGTTGTAGCT+GGG | - | chr3_1:592750-592769 | Msa0342680:intron | 35.0% | |
| ACTCAACCTAGTAACAACTT+CGG | - | chr3_1:592867-592886 | Msa0342680:intron | 35.0% | |
| TATCTACCGAAGTTGTTACT+AGG | + | chr3_1:592876-592895 | None:intergenic | 35.0% | |
| CTTCGGTAGATAACAGAATT+TGG | - | chr3_1:592884-592903 | Msa0342680:intron | 35.0% | |
| ACCGAAGAAGTTACATATTG+AGG | - | chr3_1:592974-592993 | Msa0342680:intron | 35.0% | |
| AGTTGTCCCTAAATACATCA+AGG | - | chr3_1:593000-593019 | Msa0342680:intron | 35.0% | |
| GCGGAAAATAAGATAATGCA+AGG | - | chr3_1:593304-593323 | Msa0342680:intron | 35.0% | |
| !! | ATCTTTTTCACAAGAGTGCA+TGG | + | chr3_1:593588-593607 | None:intergenic | 35.0% |
| ! | TTTTTGAACTTGGGATTGTC+TGG | - | chr3_1:594059-594078 | Msa0342680:intron | 35.0% |
| TCTGGACTATATTTAGATCC+TGG | - | chr3_1:594077-594096 | Msa0342680:intron | 35.0% | |
| CCCCTTTAACTAAAGAATAG+TGG | - | chr3_1:594246-594265 | Msa0342680:intron | 35.0% | |
| CCCCACTATTCTTTAGTTAA+AGG | + | chr3_1:594251-594270 | None:intergenic | 35.0% | |
| CCATAATTCAGCATCCATTA+AGG | + | chr3_1:594526-594545 | None:intergenic | 35.0% | |
| ! | CCTTAATGGATGCTGAATTA+TGG | - | chr3_1:594523-594542 | Msa0342680:intron | 35.0% |
| CTCATAGTTGCAAAACCAAT+CGG | - | chr3_1:594613-594632 | Msa0342680:intron | 35.0% | |
| CAAAACCAATCGGTTGTATT+TGG | - | chr3_1:594623-594642 | Msa0342680:intron | 35.0% | |
| ! | GTCTAAAACCTTTGACTACA+AGG | + | chr3_1:594712-594731 | None:intergenic | 35.0% |
| ! | ATGGATATGATTTTCGTGAC+TGG | + | chr3_1:594771-594790 | None:intergenic | 35.0% |
| ! | TAAAGGGACTAGTACTCTTA+TGG | + | chr3_1:594790-594809 | None:intergenic | 35.0% |
| AGTTATAAATGGCGGCTAAA+GGG | + | chr3_1:594806-594825 | None:intergenic | 35.0% | |
| TAACTCGATAGTACTCCAAA+TGG | - | chr3_1:594821-594840 | Msa0342680:intron | 35.0% | |
| AGACAACTTTCACATCCATT+TGG | + | chr3_1:594839-594858 | None:intergenic | 35.0% | |
| ! | TGGTCTAAAATAAACTCCTG+AGG | - | chr3_1:594961-594980 | Msa0342680:intron | 35.0% |
| ATCTCAAGTGTTCTTACACT+TGG | + | chr3_1:595300-595319 | None:intergenic | 35.0% | |
| AAGTGTAAGAACACTTGAGA+TGG | - | chr3_1:595299-595318 | Msa0342680:intron | 35.0% | |
| TGTGCAAGTTTACTAGTAGA+CGG | - | chr3_1:595409-595428 | Msa0342680:intron | 35.0% | |
| TCATGACTCTTTCTATAGCA+TGG | + | chr3_1:595448-595467 | None:intergenic | 35.0% | |
| ATGCTATAGAAAGAGTCATG+AGG | - | chr3_1:595447-595466 | Msa0342680:intron | 35.0% | |
| !! | GACTCTAAGATTACTTCACT+AGG | - | chr3_1:595487-595506 | Msa0342680:intron | 35.0% |
| !! | GATATTGACTCATTCCACTT+TGG | - | chr3_1:595628-595647 | Msa0342680:intron | 35.0% |
| ATCTCAGATTCATTCCAAAG+TGG | + | chr3_1:595645-595664 | None:intergenic | 35.0% | |
| AATCTAGTGAAGAAGCAAGT+TGG | - | chr3_1:595679-595698 | Msa0342680:intron | 35.0% | |
| TGAATTAACACAGCAGGTAA+CGG | + | chr3_1:595744-595763 | None:intergenic | 35.0% | |
| TTAGCTAATCCTTTGACGAA+AGG | - | chr3_1:595910-595929 | Msa0342680:intron | 35.0% | |
| CTATTAAGTCCTTTCGTCAA+AGG | + | chr3_1:595922-595941 | None:intergenic | 35.0% | |
| ATCCCAAGAAATAGGTTCAA+TGG | - | chr3_1:596026-596045 | Msa0342680:intron | 35.0% | |
| TCCCAAGAAATAGGTTCAAT+GGG | - | chr3_1:596027-596046 | Msa0342680:intron | 35.0% | |
| ! | ACCCATTGAACCTATTTCTT+GGG | + | chr3_1:596031-596050 | None:intergenic | 35.0% |
| ! | TACCCATTGAACCTATTTCT+TGG | + | chr3_1:596032-596051 | None:intergenic | 35.0% |
| GGTAAAAACAAGTCATGAAG+TGG | - | chr3_1:596048-596067 | Msa0342680:intron | 35.0% | |
| GATCTATACTCTATGTTGAG+TGG | - | chr3_1:596152-596171 | Msa0342680:intron | 35.0% | |
| TCTATACTCTATGTTGAGTG+GGG | - | chr3_1:596154-596173 | Msa0342680:intron | 35.0% | |
| CGTATAGGTGAGTATATCAA+GGG | + | chr3_1:596198-596217 | None:intergenic | 35.0% | |
| TCGTATAGGTGAGTATATCA+AGG | + | chr3_1:596199-596218 | None:intergenic | 35.0% | |
| TATACTCACCTATACGAATG+TGG | - | chr3_1:596202-596221 | Msa0342680:intron | 35.0% | |
| GAATATCTTCCACTATGCTA+AGG | - | chr3_1:596403-596422 | Msa0342680:intron | 35.0% | |
| !! | TATGCTAAGGTTCAAGTTGT+TGG | - | chr3_1:596416-596435 | Msa0342680:intron | 35.0% |
| !!! | AAACCGTTTTGAAGTCAAGT+GGG | - | chr3_1:596492-596511 | Msa0342680:intron | 35.0% |
| ! | TTCTGGATATGCTTTTGGAT+CGG | + | chr3_1:592103-592122 | None:intergenic | 35.0% |
| !! | GAAGTTTCTGGATATGCTTT+TGG | + | chr3_1:592108-592127 | None:intergenic | 35.0% |
| AAAGCATATCCAGAAACTTC+CGG | - | chr3_1:592108-592127 | Msa0342680:intron | 35.0% | |
| AACAAAAAACGAGTGACTTG+GGG | + | chr3_1:592188-592207 | None:intergenic | 35.0% | |
| GTAACAAAAAACGAGTGACT+TGG | + | chr3_1:592190-592209 | None:intergenic | 35.0% | |
| TCGGTGTAAAGAATCAAATG+GGG | + | chr3_1:592240-592259 | None:intergenic | 35.0% | |
| !!! | AAGCATCGACTGTGAATTTT+CGG | + | chr3_1:592259-592278 | None:intergenic | 35.0% |
| GAAGAGAGGAAAAAAAACAC+AGG | + | chr3_1:597010-597029 | None:intergenic | 35.0% | |
| CTTGTTAAAAACAAGTCGGA+GGG | + | chr3_1:592306-592325 | None:intergenic | 35.0% | |
| ! | ACTTGTTAAAAACAAGTCGG+AGG | + | chr3_1:592307-592326 | None:intergenic | 35.0% |
| AGAACACTCTTAATACCGAA+GGG | + | chr3_1:592355-592374 | None:intergenic | 35.0% | |
| AAGAACACTCTTAATACCGA+AGG | + | chr3_1:592356-592375 | None:intergenic | 35.0% | |
| GACTATGAACTTAAGACCAA+GGG | + | chr3_1:592390-592409 | None:intergenic | 35.0% | |
| ! | GTAGTGCCATATTCATGTTT+TGG | - | chr3_1:592541-592560 | Msa0342680:intron | 35.0% |
| GTGATAACACCATATTTGAG+TGG | - | chr3_1:592577-592596 | Msa0342680:intron | 35.0% | |
| ! | AACGATTGAGCCATATTTTG+AGG | - | chr3_1:592692-592711 | Msa0342680:intron | 35.0% |
| !! | ACGATTGAGCCATATTTTGA+GGG | - | chr3_1:592693-592712 | Msa0342680:intron | 35.0% |
| TTAATCGAACAGTTGTAGCT+GGG | - | chr3_1:592750-592769 | Msa0342680:intron | 35.0% | |
| ACTCAACCTAGTAACAACTT+CGG | - | chr3_1:592867-592886 | Msa0342680:intron | 35.0% | |
| TATCTACCGAAGTTGTTACT+AGG | + | chr3_1:592876-592895 | None:intergenic | 35.0% | |
| CTTCGGTAGATAACAGAATT+TGG | - | chr3_1:592884-592903 | Msa0342680:intron | 35.0% | |
| ACCAGGTAACTCTGTTAAAA+TGG | - | chr3_1:597858-597877 | Msa0342680:CDS | 35.0% | |
| !! | ACCATTTTAACAGAGTTACC+TGG | + | chr3_1:597862-597881 | None:intergenic | 35.0% |
| !! | TTTATGAGACTGATTTTGGG+TGG | - | chr3_1:597905-597924 | Msa0342680:CDS | 35.0% |
| !! | TTATGAGACTGATTTTGGGT+GGG | - | chr3_1:597906-597925 | Msa0342680:CDS | 35.0% |
| TGCACTACATCAGATTTCTT+TGG | + | chr3_1:597937-597956 | None:intergenic | 35.0% | |
| ATCAGAAAGAGAAATCGAAC+TGG | + | chr3_1:597971-597990 | None:intergenic | 35.0% | |
| TCTCTTTCTGATTGTAGAGA+TGG | - | chr3_1:597979-597998 | Msa0342680:CDS | 35.0% | |
| !! | GTTGGTGATGGAAGTGAATT+TGG | + | chr3_1:590852-590871 | None:intergenic | 40.0% |
| AAAGAAAGTGAGAGGGAGAA+TGG | + | chr3_1:590874-590893 | None:intergenic | 40.0% | |
| AGAAGAAGATGCGTTTAAGG+GGG | + | chr3_1:590923-590942 | None:intergenic | 40.0% | |
| GGTAGAAGAAGATGCGTTTA+AGG | + | chr3_1:590926-590945 | None:intergenic | 40.0% | |
| ! | GATGAGTTGGATGTGGAAAA+TGG | + | chr3_1:590947-590966 | None:intergenic | 40.0% |
| !! | TGAGAATGGGAAGTGTTGTT+TGG | + | chr3_1:590977-590996 | None:intergenic | 40.0% |
| GGAAAGTGAGTGTTTGAGAA+TGG | + | chr3_1:590991-591010 | None:intergenic | 40.0% | |
| !! | GTATATAAGGAGGGGTGTTA+TGG | + | chr3_1:591070-591089 | None:intergenic | 40.0% |
| AGGAGATAGAGTCTTCATCA+AGG | + | chr3_1:591097-591116 | None:intergenic | 40.0% | |
| AAGGCAAGTTAGGAACAAGA+TGG | + | chr3_1:591190-591209 | None:intergenic | 40.0% | |
| !! | GTACCGTTTTGTTCTGTATG+AGG | + | chr3_1:591215-591234 | None:intergenic | 40.0% |
| ATGGTGATTTGAATGGCCAT+GGG | + | chr3_1:591251-591270 | None:intergenic | 40.0% | |
| AATGGTGATTTGAATGGCCA+TGG | + | chr3_1:591252-591271 | None:intergenic | 40.0% | |
| GAAGCCAAAGTTTGGTAGAA+TGG | + | chr3_1:591270-591289 | None:intergenic | 40.0% | |
| CATACAGAGAAGCCAAAGTT+TGG | + | chr3_1:591278-591297 | None:intergenic | 40.0% | |
| TCATGAGAAGGAAGATCAAG+AGG | + | chr3_1:591413-591432 | None:intergenic | 40.0% | |
| GTTCACCCGTTCACAAAATT+GGG | + | chr3_1:591960-591979 | None:intergenic | 40.0% | |
| ! | TCTGGATATGCTTTTGGATC+GGG | + | chr3_1:592102-592121 | None:intergenic | 40.0% |
| TGGATATATCCGGAAGTTTC+TGG | + | chr3_1:592120-592139 | None:intergenic | 40.0% | |
| TTAATACCGAAGGGACAGAA+AGG | + | chr3_1:592346-592365 | None:intergenic | 40.0% | |
| TTCTTAAGACCATAGTCCCT+TGG | - | chr3_1:592371-592390 | Msa0342680:intron | 40.0% | |
| AACTTAAGACCAAGGGACTA+TGG | + | chr3_1:592383-592402 | None:intergenic | 40.0% | |
| GGACTATGAACTTAAGACCA+AGG | + | chr3_1:592391-592410 | None:intergenic | 40.0% | |
| GTGGTATCACCATATTTGAG+TGG | - | chr3_1:592516-592535 | Msa0342680:intron | 40.0% | |
| GTCTCAGCACCATAATAGAA+TGG | - | chr3_1:592599-592618 | Msa0342680:intron | 40.0% | |
| TTGAACGGTTTCGAATAGAG+CGG | - | chr3_1:592640-592659 | Msa0342680:intron | 40.0% | |
| TTGATCGAAACCACTCGATA+CGG | + | chr3_1:592673-592692 | None:intergenic | 40.0% | |
| GTTAATCGAACAGTTGTAGC+TGG | - | chr3_1:592749-592768 | Msa0342680:intron | 40.0% | |
| TAGTCTACCTTGCACAACTT+TGG | - | chr3_1:592803-592822 | Msa0342680:intron | 40.0% | |
| AGTCTACCTTGCACAACTTT+GGG | - | chr3_1:592804-592823 | Msa0342680:intron | 40.0% | |
| TAGTGAGTTCAACTCTCTTG+GGG | + | chr3_1:594104-594123 | None:intergenic | 40.0% | |
| CTAGTGAGTTCAACTCTCTT+GGG | + | chr3_1:594105-594124 | None:intergenic | 40.0% | |
| ACTAGTGAGTTCAACTCTCT+TGG | + | chr3_1:594106-594125 | None:intergenic | 40.0% | |
| CGAGATGTTATAGAACCTCA+AGG | - | chr3_1:594417-594436 | Msa0342680:intron | 40.0% | |
| GATGTTATAGAACCTCAAGG+AGG | - | chr3_1:594420-594439 | Msa0342680:intron | 40.0% | |
| ! | TTAGCTTTCTTACCTCCTTG+AGG | + | chr3_1:594435-594454 | None:intergenic | 40.0% |
| GGAACTAAAACCTGATGGTA+CGG | - | chr3_1:594667-594686 | Msa0342680:intron | 40.0% | |
| TATTCATCAACCGTACCATC+AGG | + | chr3_1:594680-594699 | None:intergenic | 40.0% | |
| !! | TGGTACGGTTGATGAATACA+AGG | - | chr3_1:594682-594701 | Msa0342680:intron | 40.0% |
| AAGGCTTTCCTTGTAGTCAA+AGG | - | chr3_1:594701-594720 | Msa0342680:intron | 40.0% | |
| GAGTTATAAATGGCGGCTAA+AGG | + | chr3_1:594807-594826 | None:intergenic | 40.0% | |
| ACAGAATATGCGAGCATCAT+TGG | - | chr3_1:595326-595345 | Msa0342680:intron | 40.0% | |
| GTCGGATCTAATACATTCAG+TGG | + | chr3_1:595367-595386 | None:intergenic | 40.0% | |
| TTTCACGACATCGACAATGT+CGG | + | chr3_1:595385-595404 | None:intergenic | 40.0% | |
| ! | TTTTTCCCATAGAGGGATCT+CGG | + | chr3_1:595721-595740 | None:intergenic | 40.0% |
| ! | GTAACGGTTTTTCCCATAGA+GGG | + | chr3_1:595728-595747 | None:intergenic | 40.0% |
| CTTAATCTTTGCAATAGCCG+CGG | + | chr3_1:595778-595797 | None:intergenic | 40.0% | |
| ATGGTAAGAGACGACAGATA+TGG | - | chr3_1:595811-595830 | Msa0342680:intron | 40.0% | |
| GAGTGTATCTCTAAATGGAG+CGG | - | chr3_1:595855-595874 | Msa0342680:intron | 40.0% | |
| AAGTCCAAGAAACATCCAGT+AGG | - | chr3_1:595947-595966 | Msa0342680:intron | 40.0% | |
| CAAGAAACATCCAGTAGGAT+GGG | - | chr3_1:595952-595971 | Msa0342680:intron | 40.0% | |
| CCTAAGTTCCACATTCGTAT+AGG | + | chr3_1:596213-596232 | None:intergenic | 40.0% | |
| CCTATACGAATGTGGAACTT+AGG | - | chr3_1:596210-596229 | Msa0342680:intron | 40.0% | |
| GCCAGTTCTATGGAATTTCA+AGG | - | chr3_1:596232-596251 | Msa0342680:intron | 40.0% | |
| GCCTTGAAATTCCATAGAAC+TGG | + | chr3_1:596236-596255 | None:intergenic | 40.0% | |
| ! | CCTAGAGCATTCGTTAAAAC+CGG | - | chr3_1:596262-596281 | Msa0342680:intron | 40.0% |
| ! | CTAGAGCATTCGTTAAAACC+GGG | - | chr3_1:596263-596282 | Msa0342680:intron | 40.0% |
| ! | CCACACACAAACCTTTTCAT+AGG | + | chr3_1:596332-596351 | None:intergenic | 40.0% |
| CCTATGAAAAGGTTTGTGTG+TGG | - | chr3_1:596329-596348 | Msa0342680:intron | 40.0% | |
| CAACTTGAACCTTAGCATAG+TGG | + | chr3_1:596415-596434 | None:intergenic | 40.0% | |
| !!! | GAAACCGTTTTGAAGTCAAG+TGG | - | chr3_1:596491-596510 | Msa0342680:intron | 40.0% |
| !!! | AACCGTTTTGAAGTCAAGTG+GGG | - | chr3_1:596493-596512 | Msa0342680:intron | 40.0% |
| GTTCACCCGTTCACAAAATT+GGG | + | chr3_1:591960-591979 | None:intergenic | 40.0% | |
| ! | TCTGGATATGCTTTTGGATC+GGG | + | chr3_1:592102-592121 | None:intergenic | 40.0% |
| TGGATATATCCGGAAGTTTC+TGG | + | chr3_1:592120-592139 | None:intergenic | 40.0% | |
| TTAATACCGAAGGGACAGAA+AGG | + | chr3_1:592346-592365 | None:intergenic | 40.0% | |
| TTCTTAAGACCATAGTCCCT+TGG | - | chr3_1:592371-592390 | Msa0342680:intron | 40.0% | |
| AACTTAAGACCAAGGGACTA+TGG | + | chr3_1:592383-592402 | None:intergenic | 40.0% | |
| GGACTATGAACTTAAGACCA+AGG | + | chr3_1:592391-592410 | None:intergenic | 40.0% | |
| GTGGTATCACCATATTTGAG+TGG | - | chr3_1:592516-592535 | Msa0342680:intron | 40.0% | |
| GTCTCAGCACCATAATAGAA+TGG | - | chr3_1:592599-592618 | Msa0342680:intron | 40.0% | |
| TTGAACGGTTTCGAATAGAG+CGG | - | chr3_1:592640-592659 | Msa0342680:intron | 40.0% | |
| GTTAATCGAACAGTTGTAGC+TGG | - | chr3_1:592749-592768 | Msa0342680:intron | 40.0% | |
| TAGTCTACCTTGCACAACTT+TGG | - | chr3_1:592803-592822 | Msa0342680:intron | 40.0% | |
| AGTCTACCTTGCACAACTTT+GGG | - | chr3_1:592804-592823 | Msa0342680:intron | 40.0% | |
| TGGAAAAGACGGTATTGTTG+TGG | - | chr3_1:597741-597760 | Msa0342680:CDS | 40.0% | |
| TGGCAGCAAATGCTATTGAA+AGG | - | chr3_1:597761-597780 | Msa0342680:CDS | 40.0% | |
| AAACGTTGATGCCTGATTGT+AGG | - | chr3_1:597824-597843 | Msa0342680:CDS | 40.0% | |
| AACGTTGATGCCTGATTGTA+GGG | - | chr3_1:597825-597844 | Msa0342680:CDS | 40.0% | |
| !! | TATGAGACTGATTTTGGGTG+GGG | - | chr3_1:597907-597926 | Msa0342680:CDS | 40.0% |
| CTTTCTGATTGTAGAGATGG+TGG | - | chr3_1:597982-598001 | Msa0342680:CDS | 40.0% | |
| ! | GATGGAAGTGAATTTGGTGG+TGG | + | chr3_1:590846-590865 | None:intergenic | 45.0% |
| !! | GGTGATGGAAGTGAATTTGG+TGG | + | chr3_1:590849-590868 | None:intergenic | 45.0% |
| AAAGTGAGAGGGAGAATGGT+TGG | + | chr3_1:590870-590889 | None:intergenic | 45.0% | |
| AAGAAGATGCGTTTAAGGGG+GGG | + | chr3_1:590921-590940 | None:intergenic | 45.0% | |
| GAAGAAGATGCGTTTAAGGG+GGG | + | chr3_1:590922-590941 | None:intergenic | 45.0% | |
| ! | AGGAAGTGATGAGTTGGATG+TGG | + | chr3_1:590954-590973 | None:intergenic | 45.0% |
| GTTTGGAGGAAGTGATGAGT+TGG | + | chr3_1:590960-590979 | None:intergenic | 45.0% | |
| !! | GAATGGGAAGTGTTGTTTGG+AGG | + | chr3_1:590974-590993 | None:intergenic | 45.0% |
| !! | GAAGAAGTGTTGGAGGGTTA+AGG | + | chr3_1:591012-591031 | None:intergenic | 45.0% |
| ATGATGAGGTTGGAGGTGAA+GGG | + | chr3_1:591035-591054 | None:intergenic | 45.0% | |
| ATTTGGAGGGATGATGAGGT+TGG | + | chr3_1:591045-591064 | None:intergenic | 45.0% | |
| ! | GGGTGTTATGGGAATTTGGA+GGG | + | chr3_1:591058-591077 | None:intergenic | 45.0% |
| TGAGGATTCAGCAATGGTGA+AGG | + | chr3_1:591117-591136 | None:intergenic | 45.0% | |
| GAGAATGTTGAAGTCTGCTG+AGG | + | chr3_1:591135-591154 | None:intergenic | 45.0% | |
| GTATGAGGTGAAGGCAAGTT+AGG | + | chr3_1:591200-591219 | None:intergenic | 45.0% | |
| TACATGTATCGTTCCTCCCA+TGG | - | chr3_1:591232-591251 | Msa0342680:intron | 45.0% | |
| TGAGAAGGAAGATCAAGAGG+TGG | + | chr3_1:591410-591429 | None:intergenic | 45.0% | |
| ! | AGGTGAGTTTAGGATCCGTT+GGG | + | chr3_1:591457-591476 | None:intergenic | 45.0% |
| ! | TAGGTGAGTTTAGGATCCGT+TGG | + | chr3_1:591458-591477 | None:intergenic | 45.0% |
| CACAAAATTGGGTACCCCAA+GGG | + | chr3_1:591949-591968 | None:intergenic | 45.0% | |
| TCACAAAATTGGGTACCCCA+AGG | + | chr3_1:591950-591969 | None:intergenic | 45.0% | |
| !! | GGGGTACCCAATTTTGTGAA+CGG | - | chr3_1:591951-591970 | Msa0342680:intron | 45.0% |
| ! | GGGTACCCAATTTTGTGAAC+GGG | - | chr3_1:591952-591971 | Msa0342680:intron | 45.0% |
| CGTTCACCCGTTCACAAAAT+TGG | + | chr3_1:591961-591980 | None:intergenic | 45.0% | |
| TTTGTTACGCGTAGCGCTTT+CGG | + | chr3_1:592060-592079 | None:intergenic | 45.0% | |
| ! | GATATGCTTTTGGATCGGGT+CGG | + | chr3_1:592098-592117 | None:intergenic | 45.0% |
| TCTACTCCTTTCTGTCCCTT+CGG | - | chr3_1:592337-592356 | Msa0342680:intron | 45.0% | |
| GTGCTGAGACCACTCAAATA+TGG | + | chr3_1:592589-592608 | None:intergenic | 45.0% | |
| !!! | TAGCTGGGCTTGTTTTATCC+TGG | - | chr3_1:592765-592784 | Msa0342680:intron | 45.0% |
| !! | GCTCTCTTTAAGACGTTTCG+TGG | + | chr3_1:592835-592854 | None:intergenic | 45.0% |
| ! | TAATGGGAGCACGACATTAG+TGG | - | chr3_1:594287-594306 | Msa0342680:intron | 45.0% |
| ! | AATGGGAGCACGACATTAGT+GGG | - | chr3_1:594288-594307 | Msa0342680:intron | 45.0% |
| TGCACATTGAGCATCACTAG+AGG | - | chr3_1:595585-595604 | Msa0342680:intron | 45.0% | |
| !! | GGTAACGGTTTTTCCCATAG+AGG | + | chr3_1:595729-595748 | None:intergenic | 45.0% |
| GTATCTCTAAATGGAGCGGT+TGG | - | chr3_1:595859-595878 | Msa0342680:intron | 45.0% | |
| CCATCCTACTGGATGTTTCT+TGG | + | chr3_1:595954-595973 | None:intergenic | 45.0% | |
| CCAAGAAACATCCAGTAGGA+TGG | - | chr3_1:595951-595970 | Msa0342680:intron | 45.0% | |
| ! | TACCATCACTTGTGGGCTAT+AGG | + | chr3_1:595985-596004 | None:intergenic | 45.0% |
| GACTGGAGATCCCAAGAAAT+AGG | - | chr3_1:596018-596037 | Msa0342680:intron | 45.0% | |
| TGGAACTTAGGCCAGTTCTA+TGG | - | chr3_1:596222-596241 | Msa0342680:intron | 45.0% | |
| !! | CCGGTTTTAACGAATGCTCT+AGG | + | chr3_1:596265-596284 | None:intergenic | 45.0% |
| ! | CTAAAAGCCCGTGCGTTTTA+AGG | + | chr3_1:596303-596322 | None:intergenic | 45.0% |
| !!! | ACCGTTTTGAAGTCAAGTGG+GGG | - | chr3_1:596494-596513 | Msa0342680:intron | 45.0% |
| TCCCCCACTTGACTTCAAAA+CGG | + | chr3_1:596498-596517 | None:intergenic | 45.0% | |
| CACAAAATTGGGTACCCCAA+GGG | + | chr3_1:591949-591968 | None:intergenic | 45.0% | |
| TCACAAAATTGGGTACCCCA+AGG | + | chr3_1:591950-591969 | None:intergenic | 45.0% | |
| !! | GGGGTACCCAATTTTGTGAA+CGG | - | chr3_1:591951-591970 | Msa0342680:intron | 45.0% |
| ! | GGGTACCCAATTTTGTGAAC+GGG | - | chr3_1:591952-591971 | Msa0342680:intron | 45.0% |
| CGTTCACCCGTTCACAAAAT+TGG | + | chr3_1:591961-591980 | None:intergenic | 45.0% | |
| TTTGTTACGCGTAGCGCTTA+CGG | + | chr3_1:596788-596807 | None:intergenic | 45.0% | |
| ! | GATATGCTTTTGGATCGGGT+CGG | + | chr3_1:592098-592117 | None:intergenic | 45.0% |
| TCTACTCCTTTCTGTCCCTT+CGG | - | chr3_1:592337-592356 | Msa0342680:intron | 45.0% | |
| GTGCTGAGACCACTCAAATA+TGG | + | chr3_1:592589-592608 | None:intergenic | 45.0% | |
| TTGATCGAAGCCACTCGATA+CGG | + | chr3_1:597419-597438 | None:intergenic | 45.0% | |
| !!! | TAGCTGGGCTTGTTTTATCC+TGG | - | chr3_1:592765-592784 | Msa0342680:intron | 45.0% |
| !! | GCTCTCTTTAAGACGTTTCG+TGG | + | chr3_1:592835-592854 | None:intergenic | 45.0% |
| ! | TCTGATTGTAGAGATGGTGG+AGG | - | chr3_1:597985-598004 | Msa0342680:CDS | 45.0% |
| !! | ATATATATATATTACTTTAA+AGG | - | chr3_1:592487-592506 | Msa0342680:intron | 5.0% |
| !! | TATATATATATTACTTTAAA+GGG | - | chr3_1:592488-592507 | Msa0342680:intron | 5.0% |
| !! | ATATATATATATTACTTTAA+AGG | - | chr3_1:592487-592506 | Msa0342680:intron | 5.0% |
| !! | TATATATATATTACTTTAAA+GGG | - | chr3_1:592488-592507 | Msa0342680:intron | 5.0% |
| !! | AGAGGGAGAATGGTTGGTGA+TGG | + | chr3_1:590864-590883 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGAAGTGTTGGA+GGG | + | chr3_1:591018-591037 | None:intergenic | 50.0% |
| !! | TGAAGGGGAAGAAGTGTTGG+AGG | + | chr3_1:591019-591038 | None:intergenic | 50.0% |
| ! | AGGTGAAGGGGAAGAAGTGT+TGG | + | chr3_1:591022-591041 | None:intergenic | 50.0% |
| TGATGAGGTTGGAGGTGAAG+GGG | + | chr3_1:591034-591053 | None:intergenic | 50.0% | |
| GATGATGAGGTTGGAGGTGA+AGG | + | chr3_1:591036-591055 | None:intergenic | 50.0% | |
| GGGAATTTGGAGGGATGATG+AGG | + | chr3_1:591049-591068 | None:intergenic | 50.0% | |
| ! | GGGGTGTTATGGGAATTTGG+AGG | + | chr3_1:591059-591078 | None:intergenic | 50.0% |
| !! | GGAGGGGTGTTATGGGAATT+TGG | + | chr3_1:591062-591081 | None:intergenic | 50.0% |
| GTCTGCTGAGGATTCAGCAA+TGG | + | chr3_1:591123-591142 | None:intergenic | 50.0% | |
| GTGATTTGAATGGCCATGGG+AGG | + | chr3_1:591248-591267 | None:intergenic | 50.0% | |
| TGCATCTCGAACGAGACTTG+TGG | + | chr3_1:591522-591541 | None:intergenic | 50.0% | |
| TTGGGGTGACCCTTCAATGT+GGG | + | chr3_1:591882-591901 | None:intergenic | 50.0% | |
| TATGGGCAAAGTGACCTCCA+AGG | - | chr3_1:591918-591937 | Msa0342680:intron | 50.0% | |
| ATGGGCAAAGTGACCTCCAA+GGG | - | chr3_1:591919-591938 | Msa0342680:intron | 50.0% | |
| ! | GGGCGAGCTCTCCTTTTATA+GGG | + | chr3_1:592220-592239 | None:intergenic | 50.0% |
| GCACTACGGCCACTCAAATA+TGG | + | chr3_1:592528-592547 | None:intergenic | 50.0% | |
| CGGTTATGTACCGTATCGAG+TGG | - | chr3_1:592660-592679 | Msa0342680:intron | 50.0% | |
| !!! | CTGGGCTTGTTTTATCCTGG+AGG | - | chr3_1:592768-592787 | Msa0342680:intron | 50.0% |
| !!! | GGCTTGTTTTATCCTGGAGG+CGG | - | chr3_1:592771-592790 | Msa0342680:intron | 50.0% |
| GCACTACCCAAAGTTGTGCA+AGG | + | chr3_1:592813-592832 | None:intergenic | 50.0% | |
| ACGTCTTAAAGAGAGCGACC+TGG | - | chr3_1:592839-592858 | Msa0342680:intron | 50.0% | |
| ! | TACTAGGTTGAGTCACGACC+AGG | + | chr3_1:592860-592879 | None:intergenic | 50.0% |
| !! | AAGAATAGTGGGGGCACTAG+TGG | - | chr3_1:594258-594277 | Msa0342680:intron | 50.0% |
| !! | AGAATAGTGGGGGCACTAGT+GGG | - | chr3_1:594259-594278 | Msa0342680:intron | 50.0% |
| ! | ATGGGAGCACGACATTAGTG+GGG | - | chr3_1:594289-594308 | Msa0342680:intron | 50.0% |
| GAGCATCATTGGCAGCACTT+AGG | - | chr3_1:595337-595356 | Msa0342680:intron | 50.0% | |
| AGGCATTAGTCCCATCCTAC+TGG | + | chr3_1:595965-595984 | None:intergenic | 50.0% | |
| TGCCTATAGCCCACAAGTGA+TGG | - | chr3_1:595980-595999 | Msa0342680:intron | 50.0% | |
| GTCGGGTTACCATCACTTGT+GGG | + | chr3_1:595992-596011 | None:intergenic | 50.0% | |
| GATCTCCAGTCATGTAGGTC+GGG | + | chr3_1:596009-596028 | None:intergenic | 50.0% | |
| GGATCTCCAGTCATGTAGGT+CGG | + | chr3_1:596010-596029 | None:intergenic | 50.0% | |
| CTTGGGATCTCCAGTCATGT+AGG | + | chr3_1:596014-596033 | None:intergenic | 50.0% | |
| CATGATCCTGCAGCGAAAGA+AGG | - | chr3_1:596104-596123 | Msa0342680:intron | 50.0% | |
| TAAAACCGGGATACACGTGC+AGG | - | chr3_1:596276-596295 | Msa0342680:intron | 50.0% | |
| AAAACCGGGATACACGTGCA+GGG | - | chr3_1:596277-596296 | Msa0342680:intron | 50.0% | |
| GAAGTCAAGTGGGGGATTGT+TGG | - | chr3_1:596502-596521 | Msa0342680:intron | 50.0% | |
| TTGGGGTGACCCTTCAATGT+GGG | + | chr3_1:591882-591901 | None:intergenic | 50.0% | |
| TATGGGCAAAGTGACCTCCA+AGG | - | chr3_1:591918-591937 | Msa0342680:intron | 50.0% | |
| ATGGGCAAAGTGACCTCCAA+GGG | - | chr3_1:591919-591938 | Msa0342680:intron | 50.0% | |
| ! | GGGCGAGCTCTCCTTTTATA+GGG | + | chr3_1:592220-592239 | None:intergenic | 50.0% |
| GCACTACGGCCACTCAAATA+TGG | + | chr3_1:592528-592547 | None:intergenic | 50.0% | |
| CGGTTATGTACCGTATCGAG+TGG | - | chr3_1:592660-592679 | Msa0342680:intron | 50.0% | |
| !!! | CTGGGCTTGTTTTATCCTGG+AGG | - | chr3_1:592768-592787 | Msa0342680:intron | 50.0% |
| !!! | GGCTTGTTTTATCCTGGAGG+CGG | - | chr3_1:592771-592790 | Msa0342680:intron | 50.0% |
| GCACTACCCAAAGTTGTGCA+AGG | + | chr3_1:592813-592832 | None:intergenic | 50.0% | |
| ACGTCTTAAAGAGAGCGACC+TGG | - | chr3_1:592839-592858 | Msa0342680:intron | 50.0% | |
| ! | TACTAGGTTGAGTCACGACC+AGG | + | chr3_1:592860-592879 | None:intergenic | 50.0% |
| !! | GATTGTAGAGATGGTGGAGG+TGG | - | chr3_1:597988-598007 | Msa0342680:CDS | 50.0% |
| TGGAGGGATGATGAGGTTGG+AGG | + | chr3_1:591042-591061 | None:intergenic | 55.0% | |
| GTTGGGGTGACCCTTCAATG+TGG | + | chr3_1:591883-591902 | None:intergenic | 55.0% | |
| ! | GGGGCGAGCTCTCCTTTTAT+AGG | + | chr3_1:592221-592240 | None:intergenic | 55.0% |
| GTTCAACTCTCTTGGGGTCC+AGG | + | chr3_1:594098-594117 | None:intergenic | 55.0% | |
| !! | GAATAGTGGGGGCACTAGTG+GGG | - | chr3_1:594260-594279 | Msa0342680:intron | 55.0% |
| !! | AATAGTGGGGGCACTAGTGG+GGG | - | chr3_1:594261-594280 | Msa0342680:intron | 55.0% |
| ! | GCACTAGTGGGGGCTCTAAT+GGG | - | chr3_1:594271-594290 | Msa0342680:intron | 55.0% |
| ! | TGGGAGCACGACATTAGTGG+GGG | - | chr3_1:594290-594309 | Msa0342680:intron | 55.0% |
| TAGAGGGATCTCGGCTAGCA+AGG | + | chr3_1:595712-595731 | None:intergenic | 55.0% | |
| TGCTAGCCGAGATCCCTCTA+TGG | - | chr3_1:595712-595731 | Msa0342680:intron | 55.0% | |
| GCTAGCCGAGATCCCTCTAT+GGG | - | chr3_1:595713-595732 | Msa0342680:intron | 55.0% | |
| GGTCGGGTTACCATCACTTG+TGG | + | chr3_1:595993-596012 | None:intergenic | 55.0% | |
| GGTAACCCGACCTACATGAC+TGG | - | chr3_1:596001-596020 | Msa0342680:intron | 55.0% | |
| CCTCATCCTTCTTTCGCTGC+AGG | + | chr3_1:596113-596132 | None:intergenic | 55.0% | |
| CCTGCAGCGAAAGAAGGATG+AGG | - | chr3_1:596110-596129 | Msa0342680:intron | 55.0% | |
| TGAGTGGGGTACACAGCTAC+AGG | - | chr3_1:596168-596187 | Msa0342680:intron | 55.0% | |
| GTGCAGGGCCTTAAAACGCA+CGG | - | chr3_1:596292-596311 | Msa0342680:intron | 55.0% | |
| TGCAGGGCCTTAAAACGCAC+GGG | - | chr3_1:596293-596312 | Msa0342680:intron | 55.0% | |
| GTTGGGGTGACCCTTCAATG+TGG | + | chr3_1:591883-591902 | None:intergenic | 55.0% | |
| ! | GGGGCGAGCTCTCCTTTTAT+AGG | + | chr3_1:592221-592240 | None:intergenic | 55.0% |
| ACAAGTCGGAGGGAGAAGAG+AGG | + | chr3_1:592296-592315 | None:intergenic | 55.0% | |
| ! | GTTTTATCCTGGAGGCGGAG+TGG | - | chr3_1:597523-597542 | Msa0342680:CDS | 55.0% |
| ! | ACCTCCAAGGGTGTGCCCTT+GGG | - | chr3_1:591931-591950 | Msa0342680:intron | 60.0% |
| ! | GTTTTATCCTGGAGGCGGCG+TGG | - | chr3_1:592776-592795 | Msa0342680:intron | 60.0% |
| ! | GGCACTAGTGGGGGCTCTAA+TGG | - | chr3_1:594270-594289 | Msa0342680:intron | 60.0% |
| AAGGCCCTGCACGTGTATCC+CGG | + | chr3_1:596284-596303 | None:intergenic | 60.0% | |
| ! | ACCTCCAAGGGTGTGCCCTT+GGG | - | chr3_1:591931-591950 | Msa0342680:intron | 60.0% |
| CTATCAACCACTCCGCCTCC+AGG | + | chr3_1:597533-597552 | None:intergenic | 60.0% | |
| ! | GACCTCCAAGGGTGTGCCCT+TGG | - | chr3_1:591930-591949 | Msa0342680:intron | 65.0% |
| ! | CCTCCAAGGGTGTGCCCTTG+GGG | - | chr3_1:591932-591951 | Msa0342680:intron | 65.0% |
| ! | GTACCCCAAGGGCACACCCT+TGG | + | chr3_1:591938-591957 | None:intergenic | 65.0% |
| CTATCAACCACGCCGCCTCC+AGG | + | chr3_1:592786-592805 | None:intergenic | 65.0% | |
| ! | GACCTCCAAGGGTGTGCCCT+TGG | - | chr3_1:591930-591949 | Msa0342680:intron | 65.0% |
| ! | CCTCCAAGGGTGTGCCCTTG+GGG | - | chr3_1:591932-591951 | Msa0342680:intron | 65.0% |
| ! | GTACCCCAAGGGCACACCCT+TGG | + | chr3_1:591938-591957 | None:intergenic | 65.0% |
| ! | CCCCAAGGGCACACCCTTGG+AGG | + | chr3_1:591935-591954 | None:intergenic | 70.0% |
| ! | CCCCAAGGGCACACCCTTGG+AGG | + | chr3_1:591935-591954 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 590765 | 598020 | 590765 | ID=Msa0342680;Name=Msa0342680 |
| chr3_1 | mRNA | 590765 | 598020 | 590765 | ID=Msa0342680-mRNA-1;Parent=Msa0342680;Name=Msa0342680-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|0.5|2|0|377 |
| chr3_1 | exon | 597162 | 598020 | 597162 | ID=Msa0342680-mRNA-1:exon:87;Parent=Msa0342680-mRNA-1 |
| chr3_1 | exon | 590765 | 591036 | 590765 | ID=Msa0342680-mRNA-1:exon:86;Parent=Msa0342680-mRNA-1 |
| chr3_1 | CDS | 597162 | 598020 | 597162 | ID=Msa0342680-mRNA-1:cds;Parent=Msa0342680-mRNA-1 |
| chr3_1 | CDS | 590765 | 591036 | 590765 | ID=Msa0342680-mRNA-1:cds;Parent=Msa0342680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
