AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0933050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933050 MtrunA17_Chr6g0449891 97.613 419 9 1 6 424 1 418 0.0 825
Msa0933050 MtrunA17_Chr4g0058971 72.787 305 80 1 113 417 79 380 8.95e-162 460
Msa0933050 MtrunA17_Chr3g0117501 69.725 327 95 2 95 421 87 409 1.25e-157 451
Msa0933050 MtrunA17_Chr2g0288011 46.358 302 154 4 115 414 100 395 4.88e-76 242
Msa0933050 MtrunA17_Chr3g0097931 43.548 310 171 3 105 414 96 401 7.03e-74 236
Msa0933050 MtrunA17_Chr4g0074541 39.416 411 208 8 13 414 14 392 1.59e-73 235
Msa0933050 MtrunA17_Chr2g0291851 45.253 316 165 6 100 411 81 392 1.78e-72 233
Msa0933050 MtrunA17_Chr4g0046561 41.776 304 160 7 116 413 96 388 1.59e-67 220
Msa0933050 MtrunA17_Chr5g0419001 36.888 347 199 7 91 424 65 404 3.98e-62 206
Msa0933050 MtrunA17_Chr4g0008071 29.630 297 194 7 125 414 19 307 8.30e-24 100
Msa0933050 MtrunA17_Chr3g0114581 28.846 312 191 11 126 421 22 318 1.65e-23 100
Msa0933050 MtrunA17_Chr1g0160071 28.076 317 212 10 104 415 2 307 1.24e-22 98.2
Msa0933050 MtrunA17_Chr8g0382081 27.393 303 201 5 121 414 14 306 4.20e-21 93.2
Msa0933050 MtrunA17_Chr3g0112981 28.146 302 198 7 122 414 28 319 1.90e-19 88.6
Msa0933050 MtrunA17_Chr5g0436341 27.243 301 202 5 122 414 12 303 1.99e-17 82.4
Msa0933050 MtrunA17_Chr4g0056661 26.246 301 207 6 121 414 55 347 1.28e-15 77.8
Msa0933050 MtrunA17_Chr8g0341861 23.101 316 218 7 117 416 167 473 8.59e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933050 AT3G01550.1 67.847 339 104 4 84 420 46 381 2.08e-153 439
Msa0933050 AT5G33320.1 59.169 409 143 8 14 421 22 407 3.95e-151 434
Msa0933050 AT3G01550.2 66.667 339 103 5 84 420 46 376 1.25e-146 422
Msa0933050 AT5G17630.1 42.188 384 211 8 35 416 32 406 3.26e-82 259
Msa0933050 AT5G54800.1 39.529 382 220 5 38 413 11 387 1.09e-75 241
Msa0933050 AT1G61800.1 39.231 390 199 9 36 414 26 388 8.26e-74 236
Msa0933050 AT1G61800.2 38.718 390 201 9 36 414 26 388 4.97e-72 232
Msa0933050 AT5G46110.4 38.700 323 185 8 96 413 83 397 3.71e-66 217
Msa0933050 AT5G46110.1 38.700 323 185 8 96 413 83 397 3.82e-66 217
Msa0933050 AT5G46110.2 40.550 291 162 7 126 413 2 284 5.94e-65 210
Msa0933050 AT5G46110.3 37.461 323 178 9 96 413 83 386 3.97e-60 201
Msa0933050 AT4G03950.1 30.592 304 141 11 119 416 18 257 2.18e-26 107
Msa0933050 AT1G21870.1 28.383 303 188 9 126 415 22 308 2.13e-23 100
Msa0933050 AT1G77610.1 28.814 295 197 9 126 415 16 302 1.89e-22 97.8
Msa0933050 AT3G10290.1 25.545 321 228 5 99 414 38 352 1.38e-21 95.9
Msa0933050 AT1G12500.1 27.401 354 224 8 82 414 12 353 1.75e-21 95.5
Msa0933050 AT5G05820.1 29.560 318 204 7 102 414 3 305 5.27e-21 93.2
Msa0933050 AT3G11320.1 29.338 317 204 7 103 414 4 305 5.83e-21 93.2
Msa0933050 AT5G04160.1 26.885 305 212 6 115 414 8 306 1.29e-20 92.4
Msa0933050 AT2G25520.1 26.959 319 211 9 105 413 3 309 5.82e-16 79.3
Msa0933050 AT1G43310.1 75.556 45 11 0 233 277 43 87 8.99e-16 72.8
Msa0933050 AT1G06470.4 24.611 321 215 8 121 423 77 388 3.09e-15 77.4
Msa0933050 AT1G06470.2 24.611 321 215 8 121 423 77 388 3.09e-15 77.4
Msa0933050 AT1G06470.1 24.611 321 215 8 121 423 77 388 3.09e-15 77.4
Msa0933050 AT1G06470.3 24.611 321 215 8 121 423 77 388 3.09e-15 77.4
Msa0933050 AT5G11230.1 26.332 319 213 9 105 413 3 309 1.56e-14 75.1
Msa0933050 AT4G32390.1 26.498 317 215 10 105 413 3 309 9.04e-14 72.8
Msa0933050 AT5G25400.1 25.532 329 223 9 105 424 3 318 1.01e-13 72.4

Find 79 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAACAGATGCCTACTTTA+TGG 0.163343 6_3:+1553928 Msa0933050:intron
TGTTCTTTCATCTCTTCTTT+TGG 0.166383 6_3:+1553230 Msa0933050:CDS
AATTATGCTTCCTTTGTCTT+TGG 0.270898 6_3:-1556513 None:intergenic
ATCATGAAGTAACCTTAAAA+AGG 0.272883 6_3:-1556681 None:intergenic
GAAGGGAAACAACAAACTTC+TGG 0.281220 6_3:+1551311 Msa0933050:CDS
CCACTTAGACTCACCATTGA+TGG 0.288106 6_3:+1551161 Msa0933050:CDS
TCTTCTCTTCTACCTATAGT+TGG 0.295688 6_3:+1553957 Msa0933050:CDS
CTTCTCTTCTACCTATAGTT+GGG 0.300468 6_3:+1553958 Msa0933050:CDS
AGGTTTGATGAGAGAAAATA+AGG 0.305575 6_3:-1551020 None:intergenic
TTGGTTTCATGTTTGCTACT+TGG 0.322424 6_3:+1551354 Msa0933050:CDS
CACTCACACCATCAAATCTA+TGG 0.327426 6_3:+1553191 Msa0933050:CDS
TGGAATGTTGTAACTGTTGC+TGG 0.349362 6_3:-1552881 None:intergenic
GCTTCCTTTGTCTTTGGCAC+TGG 0.363988 6_3:-1556507 None:intergenic
ATTTGGTGGCAGGTTTCATA+TGG 0.368164 6_3:+1556097 Msa0933050:intron
GCTATGTATAAGATCCGTTT+TGG 0.372703 6_3:+1554971 Msa0933050:CDS
AAAAGGTTCCATAGATTTGA+TGG 0.379428 6_3:-1553199 None:intergenic
CCTTCATCACTCTGTGCCTC+AGG 0.380559 6_3:-1551293 None:intergenic
CAAGACTAATGTTCGTCAAA+AGG 0.381792 6_3:-1553149 None:intergenic
GTTGTAACTGTTGCTGGAAA+TGG 0.381845 6_3:-1552875 None:intergenic
CGTTGGTGATCAATTTGATC+TGG 0.387811 6_3:+1552918 Msa0933050:CDS
TGACAGGTGAGACAGGAGTT+TGG 0.392266 6_3:-1556207 None:intergenic
CCAGTTCGGCTTTGCTTCGT+TGG 0.394551 6_3:+1552901 Msa0933050:CDS
CCAACGAAGCAAAGCCGAAC+TGG 0.401347 6_3:-1552901 None:intergenic
ACTTGCCGTGGCTCATACAT+TGG 0.405045 6_3:+1553122 Msa0933050:CDS
TTTCAACATTTACAACAAAC+AGG 0.406250 6_3:+1551394 Msa0933050:CDS
TGAACAGATGCCTACTTTAT+GGG 0.406348 6_3:+1553929 Msa0933050:intron
TTAACTCTTTCAAAAGAGTA+AGG 0.418575 6_3:+1556534 Msa0933050:three_prime_UTR
CTTGTTCAGTCTCTTCAGCT+TGG 0.421995 6_3:+1551335 Msa0933050:CDS
TGACTGAAGTCTCTTTCAAT+TGG 0.437171 6_3:+1554000 Msa0933050:CDS
TTTGGATTTGAAATGAAGAA+AGG 0.438772 6_3:-1551233 None:intergenic
TATGTGGTTTGAAAGGTGTA+AGG 0.451066 6_3:-1551081 None:intergenic
AATTACATACTGCAGATTGC+AGG 0.454301 6_3:-1554618 None:intergenic
GGAACTGCTATTGCACTTGT+TGG 0.456119 6_3:+1556450 Msa0933050:intron
GCTCTCGAACATTCAATCCT+TGG 0.458325 6_3:-1554950 None:intergenic
AAGGGAAACAACAAACTTCT+GGG 0.458763 6_3:+1551312 Msa0933050:CDS
GTCTCACCTGTCAATGCCCT+TGG 0.465418 6_3:+1556217 Msa0933050:CDS
CCTGAGGCACAGAGTGATGA+AGG 0.470545 6_3:+1551293 Msa0933050:CDS
TTCTCTTCTACCTATAGTTG+GGG 0.472836 6_3:+1553959 Msa0933050:CDS
ACCTCACCTGCTGGTATGCA+TGG 0.479845 6_3:-1555007 None:intergenic
TGCTGCTTCTTCTGTTCCTG+AGG 0.480346 6_3:+1551277 Msa0933050:CDS
ATATAGCATATGGTACCAAC+AGG 0.484432 6_3:-1554564 None:intergenic
GTTTGGTTATGTGGTTTGAA+AGG 0.492167 6_3:-1551088 None:intergenic
CCCTCCGAAAATATAGCATA+TGG 0.496477 6_3:-1554574 None:intergenic
CCGTGATTGATTCGTAAGGT+TGG 0.501913 6_3:-1554370 None:intergenic
AAAGAGAGAGAGATAGAGAG+AGG 0.505465 6_3:+1556558 Msa0933050:three_prime_UTR
CTTGCCGTGGCTCATACATT+GGG 0.506618 6_3:+1553123 Msa0933050:CDS
ACAGTTACAACATTCCAGTT+CGG 0.514414 6_3:+1552887 Msa0933050:CDS
GACTTACCAAGGGCATTGAC+AGG 0.516195 6_3:-1556223 None:intergenic
AGGTGTAAGGTTGAAGAAGA+AGG 0.521775 6_3:-1551068 None:intergenic
AGGGCATTGACAGGTGAGAC+AGG 0.524854 6_3:-1556214 None:intergenic
TTTGGTGGCAGGTTTCATAT+GGG 0.526674 6_3:+1556098 Msa0933050:intron
CATAGAGATTATGCATGTTG+AGG 0.527396 6_3:-1551040 None:intergenic
TTTCCGACTGAGTGTGTCAC+AGG 0.527740 6_3:-1556139 None:intergenic
GAAGCAGAATGCAGCCAAAA+CGG 0.532187 6_3:-1554985 None:intergenic
AATGTATGAGCCACGGCAAG+TGG 0.534798 6_3:-1553120 None:intergenic
GTTACTTCATGATCAAATGT+TGG 0.534841 6_3:+1556691 Msa0933050:three_prime_UTR
GTTTGGAAGAAAGAAGAAGA+TGG 0.535689 6_3:-1551194 None:intergenic
CATTCCGTGATTGATTCGTA+AGG 0.539431 6_3:-1554374 None:intergenic
GAAGAAACCACCCATAAAGT+AGG 0.541772 6_3:-1553939 None:intergenic
CCATCAATGGTGAGTCTAAG+TGG 0.550995 6_3:-1551161 None:intergenic
AAGAGAGAGAGATAGAGAGA+GGG 0.555665 6_3:+1556559 Msa0933050:three_prime_UTR
CTGCTTCCATGCATACCAGC+AGG 0.555668 6_3:+1555001 Msa0933050:CDS
GACGAACATTAGTCTTGGCA+AGG 0.558148 6_3:+1553155 Msa0933050:CDS
GATTGGATTCAGCACTGCAA+TGG 0.559860 6_3:+1554344 Msa0933050:CDS
TATGAGCCACGGCAAGTGGA+AGG 0.564903 6_3:-1553116 None:intergenic
TGGGCATGAAAATCCATCAA+TGG 0.566301 6_3:-1551174 None:intergenic
GGCAATCCTTCCACTTGCCG+TGG 0.571563 6_3:+1553110 Msa0933050:CDS
TTTGGAAGAAAGAAGAAGAT+GGG 0.579779 6_3:-1551193 None:intergenic
TCTTGTATTCAAGGGCAAAG+AGG 0.597986 6_3:+1556478 Msa0933050:CDS
CTTCCTATATAGGCAAGCCA+AGG 0.608037 6_3:+1554933 Msa0933050:intron
TCTCTTCTACCTATAGTTGG+GGG 0.608716 6_3:+1553960 Msa0933050:CDS
ACAGATGCCTACTTTATGGG+TGG 0.618256 6_3:+1553932 Msa0933050:intron
TAAGCCAGTGCCAAAGACAA+AGG 0.620413 6_3:+1556503 Msa0933050:CDS
GTTTCCCAATGTATGAGCCA+CGG 0.635689 6_3:-1553127 None:intergenic
AAAACTAATGGCTAACGAAG+AGG 0.644953 6_3:+1554407 Msa0933050:CDS
TCACCTGTGACACACTCAGT+CGG 0.658587 6_3:+1556136 Msa0933050:CDS
ACTGCAGATTGCAGGTACGA+AGG 0.667294 6_3:-1554610 None:intergenic
CCAACCTTACGAATCAATCA+CGG 0.673670 6_3:+1554370 Msa0933050:CDS
CTGAGGCACAGAGTGATGAA+GGG 0.684073 6_3:+1551294 Msa0933050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAATTTCAATACATTT+AGG + chr6_3:1553602-1553621 Msa0933050:intron 10.0%
!! TTATAATTTCAATACATTTA+GGG + chr6_3:1553603-1553622 Msa0933050:intron 10.0%
!! TCAAATGAATAACTTTATAA+GGG - chr6_3:1551778-1551797 None:intergenic 15.0%
!! ATCAAATGAATAACTTTATA+AGG - chr6_3:1551779-1551798 None:intergenic 15.0%
!! TATAAAGTTATTCATTTGAT+TGG + chr6_3:1551779-1551798 Msa0933050:intron 15.0%
!!! TTCATTTTTTTGCATTTATT+TGG + chr6_3:1551863-1551882 Msa0933050:intron 15.0%
!!! TTTTGATTTTAGATGAAAAT+TGG + chr6_3:1552987-1553006 Msa0933050:intron 15.0%
!!! TATCCTTATTTAAATAATTG+AGG + chr6_3:1554877-1554896 Msa0933050:intron 15.0%
!!! TAAAAAGCATTTACTATAAT+CGG - chr6_3:1555307-1555326 None:intergenic 15.0%
!!! TTTAAAATGAAACATTTTTC+TGG + chr6_3:1555416-1555435 Msa0933050:intron 15.0%
!!! TCAATTTTTTTTTTACACAT+GGG + chr6_3:1555439-1555458 Msa0933050:intron 15.0%
!!! AAATAGTATATTTGGTTTAT+AGG + chr6_3:1555691-1555710 Msa0933050:intron 15.0%
!! GAAAATTAAAAGAAGAAATA+TGG - chr6_3:1556341-1556360 None:intergenic 15.0%
!! AAAATAAAAAAATTGATGAG+TGG - chr6_3:1556613-1556632 None:intergenic 15.0%
!!! AAAGAAATGTCTTTTTAATT+TGG + chr6_3:1556766-1556785 Msa0933050:three_prime_UTR 15.0%
!!! AACAAACAGGTATTTTTTTA+AGG + chr6_3:1551407-1551426 Msa0933050:intron 20.0%
!!! ACAAACAGGTATTTTTTTAA+GGG + chr6_3:1551408-1551427 Msa0933050:intron 20.0%
!! TACTTATTAAGTCATTCATT+TGG + chr6_3:1551532-1551551 Msa0933050:intron 20.0%
!!! GATTTTTTAACTCTTTCTTA+AGG + chr6_3:1551554-1551573 Msa0933050:intron 20.0%
!! TACTTATTAAGTCATTCATT+TGG + chr6_3:1551532-1551551 Msa0933050:intron 20.0%
!!! TTTTTTTGCATTTATTTGGA+TGG + chr6_3:1551867-1551886 Msa0933050:intron 20.0%
!! AAAAAATTGGTCATAGTTAT+CGG + chr6_3:1552129-1552148 Msa0933050:intron 20.0%
!!! TCTCTAATGTATGTATATTT+TGG + chr6_3:1552216-1552235 Msa0933050:intron 20.0%
!! AATTATGATACACTATGATA+AGG + chr6_3:1552256-1552275 Msa0933050:intron 20.0%
!!! AGAGTATCATAATTCAATAT+GGG - chr6_3:1552447-1552466 None:intergenic 20.0%
!!! TAGAGTATCATAATTCAATA+TGG - chr6_3:1552448-1552467 None:intergenic 20.0%
!!! AATAAAAAAGTGATTAGCTA+CGG - chr6_3:1552514-1552533 None:intergenic 20.0%
!! TAAAAATGTCATACTTCTAT+CGG + chr6_3:1552646-1552665 Msa0933050:intron 20.0%
!! ACTAACAAAATAGATATTTG+AGG - chr6_3:1553400-1553419 None:intergenic 20.0%
!!! ATCTATTTTGTTAGTTAGTT+TGG + chr6_3:1553405-1553424 Msa0933050:intron 20.0%
!!! TGATGTTTTTTGTAATTTGT+TGG + chr6_3:1553491-1553510 Msa0933050:intron 20.0%
!! TAAAAAGTCGTGATATTATA+AGG - chr6_3:1554696-1554715 None:intergenic 20.0%
!! AATTGAATAAAATTCATGCA+AGG + chr6_3:1554775-1554794 Msa0933050:intron 20.0%
!! CTTCCTCAATTATTTAAATA+AGG - chr6_3:1554883-1554902 None:intergenic 20.0%
!! CATATTAATTATAATCTGCA+TGG + chr6_3:1555093-1555112 Msa0933050:intron 20.0%
!!! TTTTTTTTTATATCCGGATA+TGG + chr6_3:1555181-1555200 Msa0933050:intron 20.0%
!!! GTCAATTTTTTTTTTACACA+TGG + chr6_3:1555438-1555457 Msa0933050:intron 20.0%
!!! GAATAAATATTGTTGACTTA+TGG + chr6_3:1555547-1555566 Msa0933050:intron 20.0%
!!! AACAGAAGATATTTTTTGTT+TGG + chr6_3:1555649-1555668 Msa0933050:intron 20.0%
!! AAGTAAGTTACTATTACTAA+AGG - chr6_3:1556034-1556053 None:intergenic 20.0%
!!! TTTTGAAAAGGGTGAAATTT+TGG - chr6_3:1551113-1551132 None:intergenic 25.0%
!!! GAGAATGAGTATTTTGAAAA+GGG - chr6_3:1551124-1551143 None:intergenic 25.0%
!!! TGAGAATGAGTATTTTGAAA+AGG - chr6_3:1551125-1551144 None:intergenic 25.0%
!! TTTGGATTTGAAATGAAGAA+AGG - chr6_3:1551236-1551255 None:intergenic 25.0%
! CTTCATTTCAAATCCAAAAA+TGG + chr6_3:1551238-1551257 Msa0933050:CDS 25.0%
!!! ACTCTAAAAGAATCCATTTT+TGG - chr6_3:1551254-1551273 None:intergenic 25.0%
! TTTCAACATTTACAACAAAC+AGG + chr6_3:1551394-1551413 Msa0933050:CDS 25.0%
!!! CAAACAGGTATTTTTTTAAG+GGG + chr6_3:1551409-1551428 Msa0933050:intron 25.0%
! AAACATTATTAGTCATATGG+CGG - chr6_3:1551642-1551661 None:intergenic 25.0%
! GTCAAACATTATTAGTCATA+TGG - chr6_3:1551645-1551664 None:intergenic 25.0%
!!! GTTTTTTTAACCCTTTCTTT+AGG + chr6_3:1551699-1551718 Msa0933050:intron 25.0%
! ACAAATTAAGCCTAAAGAAA+GGG - chr6_3:1551712-1551731 None:intergenic 25.0%
! TACAAATTAAGCCTAAAGAA+AGG - chr6_3:1551713-1551732 None:intergenic 25.0%
! ATAAGGTTTGATTCATTCTA+AGG + chr6_3:1552273-1552292 Msa0933050:intron 25.0%
! ACTACATTAACTACTCTAAT+TGG - chr6_3:1552324-1552343 None:intergenic 25.0%
!! GTTAGAGAGTTAGTATATTT+TGG + chr6_3:1552413-1552432 Msa0933050:intron 25.0%
! GATTCAAGTCATAAATCAAA+CGG - chr6_3:1552559-1552578 None:intergenic 25.0%
!!! TTGAATCGTGAATTATTTTG+AGG + chr6_3:1552572-1552591 Msa0933050:intron 25.0%
!! GTTAGATTTTACTCATGATT+CGG + chr6_3:1552690-1552709 Msa0933050:intron 25.0%
!!! TGCATTGGTTGTTTATTATT+AGG + chr6_3:1552838-1552857 Msa0933050:intron 25.0%
! AATGTGTCCTTTAATTAGTT+TGG + chr6_3:1553373-1553392 Msa0933050:intron 25.0%
!! GTCTTTTGTTAGTAAATTGA+CGG - chr6_3:1553464-1553483 None:intergenic 25.0%
!!! TAGCTGACTAATTGTTATTT+TGG - chr6_3:1553661-1553680 None:intergenic 25.0%
! ACCAAATTCAAATGATTACA+TGG + chr6_3:1553735-1553754 Msa0933050:intron 25.0%
! CCAAATTCAAATGATTACAT+GGG + chr6_3:1553736-1553755 Msa0933050:intron 25.0%
! AAATGTCCTTGTTACATATA+TGG + chr6_3:1553783-1553802 Msa0933050:intron 25.0%
!!! TGATGGATATCTAATTGTTT+TGG + chr6_3:1553877-1553896 Msa0933050:intron 25.0%
! ATATCTAATAAGACCTTGTT+TGG + chr6_3:1554061-1554080 Msa0933050:intron 25.0%
! TTAAACAATATAGCCAAACA+AGG - chr6_3:1554077-1554096 None:intergenic 25.0%
!!! TGTTTTCAGCTTATTTCTAT+AGG - chr6_3:1554212-1554231 None:intergenic 25.0%
!!! TGTTTTGAGCAAAAAACTAA+TGG + chr6_3:1554395-1554414 Msa0933050:CDS 25.0%
! TATTGAGTAAAGTTTACGTA+GGG - chr6_3:1554727-1554746 None:intergenic 25.0%
! GACAACATATATTTAACCAT+TGG + chr6_3:1554827-1554846 Msa0933050:intron 25.0%
! ATAGCATATAAAGTTACCAA+TGG - chr6_3:1554846-1554865 None:intergenic 25.0%
!! AATTCCCAATCAATTTTATC+CGG + chr6_3:1555157-1555176 Msa0933050:intron 25.0%
!!! AAATGCTTTTTATATCGATG+TGG + chr6_3:1555315-1555334 Msa0933050:intron 25.0%
!!! AACTGATTTTAAGTTTGTGT+AGG + chr6_3:1555596-1555615 Msa0933050:intron 25.0%
!! CTTCTGTTTTACATGAAATA+TGG - chr6_3:1555637-1555656 None:intergenic 25.0%
! ATTTCTGAGTTTGTCATTAA+AGG + chr6_3:1555796-1555815 Msa0933050:intron 25.0%
!! ACTATTTTCAGATTAGTGTT+AGG + chr6_3:1555848-1555867 Msa0933050:intron 25.0%
!! AGTATGTAACATTGGTATTT+TGG + chr6_3:1555929-1555948 Msa0933050:intron 25.0%
! CAAACATTAGCAACTAAATA+TGG - chr6_3:1556003-1556022 None:intergenic 25.0%
!! TTCAAGTACTTGCAAATTTT+TGG + chr6_3:1556266-1556285 Msa0933050:intron 25.0%
! ACAAAAATTGCTACAACTTA+TGG + chr6_3:1556302-1556321 Msa0933050:intron 25.0%
! CAAAAATTGCTACAACTTAT+GGG + chr6_3:1556303-1556322 Msa0933050:intron 25.0%
! GAAGAAATATGGATAGTAAA+TGG - chr6_3:1556330-1556349 None:intergenic 25.0%
! CACAAAAAAGGAAATGAAAA+TGG - chr6_3:1556413-1556432 None:intergenic 25.0%
!!! CATTTTCATTTCCTTTTTTG+TGG + chr6_3:1556411-1556430 Msa0933050:intron 25.0%
! TTAACTCTTTCAAAAGAGTA+AGG + chr6_3:1556534-1556553 Msa0933050:three_prime_UTR 25.0%
!!! TTTATTTTTTTTGTTGGGTG+AGG + chr6_3:1556631-1556650 Msa0933050:three_prime_UTR 25.0%
!!! TTATTTTTTTTGTTGGGTGA+GGG + chr6_3:1556632-1556651 Msa0933050:three_prime_UTR 25.0%
! ATCATGAAGTAACCTTAAAA+AGG - chr6_3:1556684-1556703 None:intergenic 25.0%
GAAGTGAAAAACACTGAAAA+AGG - chr6_3:1550979-1550998 None:intergenic 30.0%
AGGTTTGATGAGAGAAAATA+AGG - chr6_3:1551023-1551042 None:intergenic 30.0%
!!! GAAATTTTGGTTTGGTTATG+TGG - chr6_3:1551100-1551119 None:intergenic 30.0%
!!! AAAAGGGTGAAATTTTGGTT+TGG - chr6_3:1551108-1551127 None:intergenic 30.0%
TTTGGAAGAAAGAAGAAGAT+GGG - chr6_3:1551196-1551215 None:intergenic 30.0%
! GTGAAGATTTTCTAACAGTT+TGG - chr6_3:1551214-1551233 None:intergenic 30.0%
AAACATTATCAGTCATATGG+CGG - chr6_3:1551497-1551516 None:intergenic 30.0%
GTCAAACATTATCAGTCATA+TGG - chr6_3:1551500-1551519 None:intergenic 30.0%
!! GCTTAATTTGTATACACTGT+CGG + chr6_3:1551721-1551740 Msa0933050:intron 30.0%
! CATTCTCTTTTAACACAAGA+AGG + chr6_3:1551990-1552009 Msa0933050:intron 30.0%
AAATGTAATTAGAGTCGTGT+TGG - chr6_3:1552045-1552064 None:intergenic 30.0%
AAGGCAATAATTTGGAAAGA+TGG - chr6_3:1552075-1552094 None:intergenic 30.0%
! CATTAGAGATTTGTTCAGTT+TGG - chr6_3:1552205-1552224 None:intergenic 30.0%
! TTCATTCTAAGGAATCACTA+AGG + chr6_3:1552284-1552303 Msa0933050:intron 30.0%
TCACTAAGGATATGGAATAA+TGG + chr6_3:1552298-1552317 Msa0933050:intron 30.0%
! TGATTAGCTACGGTAAATTT+AGG - chr6_3:1552504-1552523 None:intergenic 30.0%
!!! AATCACTTTTTTATTGTCGC+TGG + chr6_3:1552519-1552538 Msa0933050:intron 30.0%
! TTACTCATGATTCGGAAAAT+AGG + chr6_3:1552698-1552717 Msa0933050:intron 30.0%
! CTTTCTTTTTGATCCTCTTT+TGG + chr6_3:1552799-1552818 Msa0933050:intron 30.0%
!!! GATCTACTAATTTTTGGTCT+AGG - chr6_3:1552959-1552978 None:intergenic 30.0%
ACCAAAAATTAGTAGATCAC+AGG + chr6_3:1552961-1552980 Msa0933050:CDS 30.0%
! ACCTGTGATCTACTAATTTT+TGG - chr6_3:1552965-1552984 None:intergenic 30.0%
ACAAGACATTCACCAAATAT+TGG - chr6_3:1553018-1553037 None:intergenic 30.0%
AAAAGGTTCCATAGATTTGA+TGG - chr6_3:1553202-1553221 None:intergenic 30.0%
GAAAGAACAACAGTGAAAAA+AGG - chr6_3:1553219-1553238 None:intergenic 30.0%
! TGTTCTTTCATCTCTTCTTT+TGG + chr6_3:1553230-1553249 Msa0933050:CDS 30.0%
! GTTCTTTCATCTCTTCTTTT+GGG + chr6_3:1553231-1553250 Msa0933050:CDS 30.0%
!! CCAAAATCGATGTTTTTCAA+CGG - chr6_3:1553287-1553306 None:intergenic 30.0%
CTAATTAAAGGACACATTCA+TGG - chr6_3:1553371-1553390 None:intergenic 30.0%
TTGAGGACCAAACTAATTAA+AGG - chr6_3:1553383-1553402 None:intergenic 30.0%
CCCATGTAATCATTTGAATT+TGG - chr6_3:1553739-1553758 None:intergenic 30.0%
! GTAACAAGGACATTTTCTTA+GGG - chr6_3:1553778-1553797 None:intergenic 30.0%
! TGTAACAAGGACATTTTCTT+AGG - chr6_3:1553779-1553798 None:intergenic 30.0%
CTGTATAGTAGAAAATGACT+TGG + chr6_3:1553826-1553845 Msa0933050:intron 30.0%
CTAAAGCAAGAATAACTTCA+TGG + chr6_3:1554035-1554054 Msa0933050:intron 30.0%
ACATTAGTACTTGTATGCAT+AGG - chr6_3:1554107-1554126 None:intergenic 30.0%
AATAAGCTGAAAACAGTTGA+TGG + chr6_3:1554217-1554236 Msa0933050:intron 30.0%
TAGCAGAACTACATACTATT+TGG - chr6_3:1554273-1554292 None:intergenic 30.0%
CAACAGGAAAAATGAAATGA+TGG - chr6_3:1554551-1554570 None:intergenic 30.0%
!! CATCATTTCATTTTTCCTGT+TGG + chr6_3:1554549-1554568 Msa0933050:CDS 30.0%
! GGTACCATATGCTATATTTT+CGG + chr6_3:1554570-1554589 Msa0933050:CDS 30.0%
CTATTGAGTAAAGTTTACGT+AGG - chr6_3:1554728-1554747 None:intergenic 30.0%
AATTGAGGAAGAGAAAAATG+TGG + chr6_3:1554892-1554911 Msa0933050:intron 30.0%
! TAGCATGTTACTTCCTATAT+AGG + chr6_3:1554923-1554942 Msa0933050:intron 30.0%
! ATTCCCAATCAATTTTATCC+GGG + chr6_3:1555158-1555177 Msa0933050:intron 30.0%
AAACCCGGATAAAATTGATT+GGG - chr6_3:1555164-1555183 None:intergenic 30.0%
AAAACCCGGATAAAATTGAT+TGG - chr6_3:1555165-1555184 None:intergenic 30.0%
!!! TCCGGGTTTTTTTTTATATC+CGG + chr6_3:1555175-1555194 Msa0933050:intron 30.0%
TCCGGATATAAAAAAAAACC+CGG - chr6_3:1555179-1555198 None:intergenic 30.0%
TTTATATCCGGATATGGATT+TGG + chr6_3:1555187-1555206 Msa0933050:intron 30.0%
! TTGTTGATAAATCACGTATC+CGG + chr6_3:1555210-1555229 Msa0933050:intron 30.0%
TGAAATCAAATCCAGTTATG+TGG + chr6_3:1555267-1555286 Msa0933050:intron 30.0%
TTAAAACCAATCCACATAAC+TGG - chr6_3:1555281-1555300 None:intergenic 30.0%
AAGAAACTTCTTGTATGAGA+TGG - chr6_3:1555477-1555496 None:intergenic 30.0%
TCGAATGATGTACTTTATTC+AGG + chr6_3:1555496-1555515 Msa0933050:intron 30.0%
CTCCATGATAAAAGGAAAAT+TGG - chr6_3:1555822-1555841 None:intergenic 30.0%
! CAATTTTCCTTTTATCATGG+AGG + chr6_3:1555820-1555839 Msa0933050:intron 30.0%
CTAATGCTCTGTTTATGTTA+AGG - chr6_3:1555909-1555928 None:intergenic 30.0%
AGCATTAGAGTATGTAACAT+TGG + chr6_3:1555921-1555940 Msa0933050:intron 30.0%
CATTAGCAACTAAATATGGA+TGG - chr6_3:1555999-1556018 None:intergenic 30.0%
GTGACATCAATAATTGATGT+TGG + chr6_3:1556064-1556083 Msa0933050:intron 30.0%
TGCAAGTACTTGAAAATATG+TGG - chr6_3:1556260-1556279 None:intergenic 30.0%
! TTGGAGTTTTCTTGTATTCA+AGG + chr6_3:1556469-1556488 Msa0933050:CDS 30.0%
! TGGAGTTTTCTTGTATTCAA+GGG + chr6_3:1556470-1556489 Msa0933050:CDS 30.0%
AATTATGCTTCCTTTGTCTT+TGG - chr6_3:1556516-1556535 None:intergenic 30.0%
!!! TATTTTTTTTGTTGGGTGAG+GGG + chr6_3:1556633-1556652 Msa0933050:three_prime_UTR 30.0%
! CTAGAAGTTTGTCCTTTTTA+AGG + chr6_3:1556669-1556688 Msa0933050:three_prime_UTR 30.0%
GTTACTTCATGATCAAATGT+TGG + chr6_3:1556691-1556710 Msa0933050:three_prime_UTR 30.0%
CATAGAGATTATGCATGTTG+AGG - chr6_3:1551043-1551062 None:intergenic 35.0%
! TATGTGGTTTGAAAGGTGTA+AGG - chr6_3:1551084-1551103 None:intergenic 35.0%
GTTTGGTTATGTGGTTTGAA+AGG - chr6_3:1551091-1551110 None:intergenic 35.0%
GTTTGGAAGAAAGAAGAAGA+TGG - chr6_3:1551197-1551216 None:intergenic 35.0%
AAGGGAAACAACAAACTTCT+GGG + chr6_3:1551312-1551331 Msa0933050:CDS 35.0%
! TTGGTTTCATGTTTGCTACT+TGG + chr6_3:1551354-1551373 Msa0933050:CDS 35.0%
GTTTACTTCGTATACACTGA+CGG + chr6_3:1551576-1551595 Msa0933050:intron 35.0%
!! GATTGGTTGTGATTTGTTGA+AGG + chr6_3:1551796-1551815 Msa0933050:intron 35.0%
CATCTTACCATACATGTTAG+CGG + chr6_3:1552152-1552171 Msa0933050:intron 35.0%
! GTTCAGTTTGGTATCGAATT+TGG - chr6_3:1552193-1552212 None:intergenic 35.0%
CTAAGGAATCACTAAGGATA+TGG + chr6_3:1552290-1552309 Msa0933050:intron 35.0%
ACGCATAGAAACATAGAACA+TGG - chr6_3:1552759-1552778 None:intergenic 35.0%
CAATTGAGAACAACCAAAAG+AGG - chr6_3:1552815-1552834 None:intergenic 35.0%
TGTTCTCAATTGCAATGCAT+TGG + chr6_3:1552823-1552842 Msa0933050:intron 35.0%
ACAGTTACAACATTCCAGTT+CGG + chr6_3:1552887-1552906 Msa0933050:CDS 35.0%
!! AAATTGGCTCGTCCAATATT+TGG + chr6_3:1553003-1553022 Msa0933050:intron 35.0%
TGTTTGTGTTTCACAGCTTA+CGG + chr6_3:1553089-1553108 Msa0933050:intron 35.0%
CAAGACTAATGTTCGTCAAA+AGG - chr6_3:1553152-1553171 None:intergenic 35.0%
!! CTTTTGACGAACATTAGTCT+TGG + chr6_3:1553150-1553169 Msa0933050:CDS 35.0%
!!! CCGTTGAAAAACATCGATTT+TGG + chr6_3:1553284-1553303 Msa0933050:intron 35.0%
!! TAATTTGTTGGTTTCCCTAG+TGG + chr6_3:1553503-1553522 Msa0933050:intron 35.0%
TCAAACCAATCAATCCACTA+GGG - chr6_3:1553520-1553539 None:intergenic 35.0%
ATCAAACCAATCAATCCACT+AGG - chr6_3:1553521-1553540 None:intergenic 35.0%
!!! GGTTTTAAACCAAGAAGGAA+AGG - chr6_3:1553558-1553577 None:intergenic 35.0%
!!! TTTTGGTTCCTAAATGTACG+AGG - chr6_3:1553644-1553663 None:intergenic 35.0%
! CACGCAGTTTAGTAATTTGT+AGG + chr6_3:1553685-1553704 Msa0933050:intron 35.0%
TAGGACTGAAAATCGAGTAA+AGG + chr6_3:1553704-1553723 Msa0933050:intron 35.0%
ATGACGCCATATATGTAACA+AGG - chr6_3:1553792-1553811 None:intergenic 35.0%
AAGTAGGCATCTGTTCATTT+AGG - chr6_3:1553926-1553945 None:intergenic 35.0%
ATGAACAGATGCCTACTTTA+TGG + chr6_3:1553928-1553947 Msa0933050:intron 35.0%
TGAACAGATGCCTACTTTAT+GGG + chr6_3:1553929-1553948 Msa0933050:intron 35.0%
TCTTCTCTTCTACCTATAGT+TGG + chr6_3:1553957-1553976 Msa0933050:CDS 35.0%
CTTCTCTTCTACCTATAGTT+GGG + chr6_3:1553958-1553977 Msa0933050:CDS 35.0%
TTCTCTTCTACCTATAGTTG+GGG + chr6_3:1553959-1553978 Msa0933050:CDS 35.0%
TGACTGAAGTCTCTTTCAAT+TGG + chr6_3:1554000-1554019 Msa0933050:CDS 35.0%
! TATGTAGTTCTGCTACTCTT+AGG + chr6_3:1554278-1554297 Msa0933050:intron 35.0%
! CTCTTAGGTAAGATTGATTC+TGG + chr6_3:1554293-1554312 Msa0933050:intron 35.0%
AAAACTAATGGCTAACGAAG+AGG + chr6_3:1554407-1554426 Msa0933050:CDS 35.0%
!! ACTTGAAGCATGTTTTTGAC+AGG + chr6_3:1554489-1554508 Msa0933050:intron 35.0%
!! ATGTTTTTGACAGGAAGCTT+TGG + chr6_3:1554498-1554517 Msa0933050:intron 35.0%
ATATAGCATATGGTACCAAC+AGG - chr6_3:1554567-1554586 None:intergenic 35.0%
! ACCATATGCTATATTTTCGG+AGG + chr6_3:1554573-1554592 Msa0933050:CDS 35.0%
! CCATATGCTATATTTTCGGA+GGG + chr6_3:1554574-1554593 Msa0933050:CDS 35.0%
AATTACATACTGCAGATTGC+AGG - chr6_3:1554621-1554640 None:intergenic 35.0%
ATGCAAGGACTAAGCATAAA+AGG + chr6_3:1554790-1554809 Msa0933050:intron 35.0%
! GCTATGTATAAGATCCGTTT+TGG + chr6_3:1554971-1554990 Msa0933050:CDS 35.0%
! GAATGAGCAACTAAGCTTTT+AGG - chr6_3:1555134-1555153 None:intergenic 35.0%
TCAACAACCAAATCCATATC+CGG - chr6_3:1555197-1555216 None:intergenic 35.0%
!! CCATAGTTGCTCATTTTAAC+CGG - chr6_3:1555232-1555251 None:intergenic 35.0%
! TGGATTTGATTTCACAACAC+CGG - chr6_3:1555261-1555280 None:intergenic 35.0%
TCAAATCCAGTTATGTGGAT+TGG + chr6_3:1555272-1555291 Msa0933050:intron 35.0%
! CACATGTGCAATGAAGATTT+TGG + chr6_3:1555379-1555398 Msa0933050:intron 35.0%
!! GATTGTGCGTTGATTAAACA+CGG + chr6_3:1555769-1555788 Msa0933050:intron 35.0%
!! ATTGTGCGTTGATTAAACAC+GGG + chr6_3:1555770-1555789 Msa0933050:intron 35.0%
! GGCCAATTTTCCTTTTATCA+TGG + chr6_3:1555817-1555836 Msa0933050:intron 35.0%
! TTTCCTTTTATCATGGAGGT+CGG + chr6_3:1555824-1555843 Msa0933050:intron 35.0%
ATGTTGGAGCTTAATGCATT+TGG + chr6_3:1556080-1556099 Msa0933050:intron 35.0%
CCAAATTAGGACCACAAAAA+AGG - chr6_3:1556425-1556444 None:intergenic 35.0%
!!! CCTTTTTTGTGGTCCTAATT+TGG + chr6_3:1556422-1556441 Msa0933050:intron 35.0%
AGGTGTAAGGTTGAAGAAGA+AGG - chr6_3:1551071-1551090 None:intergenic 40.0%
TGGGCATGAAAATCCATCAA+TGG - chr6_3:1551177-1551196 None:intergenic 40.0%
GAAGGGAAACAACAAACTTC+TGG + chr6_3:1551311-1551330 Msa0933050:CDS 40.0%
CATATGGCGGTTATGGTTAT+TGG - chr6_3:1551484-1551503 None:intergenic 40.0%
TATCAGTCATATGGCGGTTA+TGG - chr6_3:1551491-1551510 None:intergenic 40.0%
GGAATAGGGTCAAAGTCAAA+TGG + chr6_3:1551920-1551939 Msa0933050:intron 40.0%
ACGTCGACAAGGCAATAATT+TGG - chr6_3:1552083-1552102 None:intergenic 40.0%
!!! CCAATTTTTTTGCATGCCAC+CGG - chr6_3:1552119-1552138 None:intergenic 40.0%
GTTGTAACTGTTGCTGGAAA+TGG - chr6_3:1552878-1552897 None:intergenic 40.0%
TGGAATGTTGTAACTGTTGC+TGG - chr6_3:1552884-1552903 None:intergenic 40.0%
!! CGTTGGTGATCAATTTGATC+TGG + chr6_3:1552918-1552937 Msa0933050:CDS 40.0%
CACTCACACCATCAAATCTA+TGG + chr6_3:1553191-1553210 Msa0933050:CDS 40.0%
!! TTCATCTCTTCTTTTGGGTG+AGG + chr6_3:1553236-1553255 Msa0933050:CDS 40.0%
! TTGTTAGTTAGTTTGGTCCC+TGG + chr6_3:1553412-1553431 Msa0933050:intron 40.0%
CAATCTACACCTTTCCTTCT+TGG + chr6_3:1553546-1553565 Msa0933050:intron 40.0%
!!! CTGCTGGTTTTAAACCAAGA+AGG - chr6_3:1553563-1553582 None:intergenic 40.0%
GCTCATAAATGAGCAAGTGA+TGG + chr6_3:1553860-1553879 Msa0933050:intron 40.0%
GAAGAAACCACCCATAAAGT+AGG - chr6_3:1553942-1553961 None:intergenic 40.0%
TCTCTTCTACCTATAGTTGG+GGG + chr6_3:1553960-1553979 Msa0933050:CDS 40.0%
CCAACCTTACGAATCAATCA+CGG + chr6_3:1554370-1554389 Msa0933050:CDS 40.0%
!! CATTCCGTGATTGATTCGTA+AGG - chr6_3:1554377-1554396 None:intergenic 40.0%
CCCTCCGAAAATATAGCATA+TGG - chr6_3:1554577-1554596 None:intergenic 40.0%
!!! AGTCCTTGTTTTGCTTTCGT+GGG - chr6_3:1554753-1554772 None:intergenic 40.0%
!!! TAGTCCTTGTTTTGCTTTCG+TGG - chr6_3:1554754-1554773 None:intergenic 40.0%
!! AATCCTTGGCTTGCCTATAT+AGG - chr6_3:1554939-1554958 None:intergenic 40.0%
CCGGTTAAAATGAGCAACTA+TGG + chr6_3:1555229-1555248 Msa0933050:intron 40.0%
TGAGCAACTATGGACATAAC+CGG + chr6_3:1555239-1555258 Msa0933050:intron 40.0%
AAGTAGGGTTGCTTATGGAT+AGG - chr6_3:1555357-1555376 None:intergenic 40.0%
CATTGCACATGTGACAAGTA+GGG - chr6_3:1555372-1555391 None:intergenic 40.0%
TCATTGCACATGTGACAAGT+AGG - chr6_3:1555373-1555392 None:intergenic 40.0%
TTGGAGCTTAATGCATTTGG+TGG + chr6_3:1556083-1556102 Msa0933050:intron 40.0%
! ATTTGGTGGCAGGTTTCATA+TGG + chr6_3:1556097-1556116 Msa0933050:intron 40.0%
! TTTGGTGGCAGGTTTCATAT+GGG + chr6_3:1556098-1556117 Msa0933050:intron 40.0%
CCATTAGAGAGACTTACCAA+GGG - chr6_3:1556236-1556255 None:intergenic 40.0%
ACCATTAGAGAGACTTACCA+AGG - chr6_3:1556237-1556256 None:intergenic 40.0%
TCTTGTATTCAAGGGCAAAG+AGG + chr6_3:1556478-1556497 Msa0933050:CDS 40.0%
AAAGAGAGAGAGATAGAGAG+AGG + chr6_3:1556558-1556577 Msa0933050:three_prime_UTR 40.0%
AAGAGAGAGAGATAGAGAGA+GGG + chr6_3:1556559-1556578 Msa0933050:three_prime_UTR 40.0%
CCATCAATGGTGAGTCTAAG+TGG - chr6_3:1551164-1551183 None:intergenic 45.0%
CCACTTAGACTCACCATTGA+TGG + chr6_3:1551161-1551180 Msa0933050:CDS 45.0%
CTTGTTCAGTCTCTTCAGCT+TGG + chr6_3:1551335-1551354 Msa0933050:CDS 45.0%
GGTTAGCGTGAGTTAGATTC+TGG + chr6_3:1551888-1551907 Msa0933050:intron 45.0%
!! CGTGAGTTAGATTCTGGAGT+GGG + chr6_3:1551894-1551913 Msa0933050:intron 45.0%
!! AGTTAGATTCTGGAGTGGGA+AGG + chr6_3:1551898-1551917 Msa0933050:intron 45.0%
!! GTTAGATTCTGGAGTGGGAA+GGG + chr6_3:1551899-1551918 Msa0933050:intron 45.0%
CCGGTGGCATGCAAAAAAAT+TGG + chr6_3:1552116-1552135 Msa0933050:intron 45.0%
CTAGACACCGCTAACATGTA+TGG - chr6_3:1552162-1552181 None:intergenic 45.0%
GTTTCCCAATGTATGAGCCA+CGG - chr6_3:1553130-1553149 None:intergenic 45.0%
!! GACGAACATTAGTCTTGGCA+AGG + chr6_3:1553155-1553174 Msa0933050:CDS 45.0%
ATGAACGGAAGACACATCCA+GGG - chr6_3:1553432-1553451 None:intergenic 45.0%
GTGTCTTCCGTTCATCAGTT+TGG + chr6_3:1553437-1553456 Msa0933050:intron 45.0%
! TGACGGACCAAACTGATGAA+CGG - chr6_3:1553447-1553466 None:intergenic 45.0%
!! GGTTTCCCTAGTGGATTGAT+TGG + chr6_3:1553512-1553531 Msa0933050:intron 45.0%
AAACCAGCAGAGACAAACAG+AGG + chr6_3:1553573-1553592 Msa0933050:intron 45.0%
AACCAGCAGAGACAAACAGA+GGG + chr6_3:1553574-1553593 Msa0933050:intron 45.0%
TGGTTCCTAAATGTACGAGG+CGG - chr6_3:1553641-1553660 None:intergenic 45.0%
TGGCGTCATTCGATACATGT+AGG + chr6_3:1553803-1553822 Msa0933050:intron 45.0%
ACAGATGCCTACTTTATGGG+TGG + chr6_3:1553932-1553951 Msa0933050:intron 45.0%
ACATGTTCTCGTCTCCAAAC+AGG + chr6_3:1554322-1554341 Msa0933050:intron 45.0%
TTCTCGTCTCCAAACAGGAT+TGG + chr6_3:1554327-1554346 Msa0933050:intron 45.0%
GTGCTGAATCCAATCCTGTT+TGG - chr6_3:1554339-1554358 None:intergenic 45.0%
GATTGGATTCAGCACTGCAA+TGG + chr6_3:1554344-1554363 Msa0933050:CDS 45.0%
!! CCGTGATTGATTCGTAAGGT+TGG - chr6_3:1554373-1554392 None:intergenic 45.0%
!!! GTCCTTGTTTTGCTTTCGTG+GGG - chr6_3:1554752-1554771 None:intergenic 45.0%
CTTCCTATATAGGCAAGCCA+AGG + chr6_3:1554933-1554952 Msa0933050:intron 45.0%
GCTCTCGAACATTCAATCCT+TGG - chr6_3:1554953-1554972 None:intergenic 45.0%
GAAGCAGAATGCAGCCAAAA+CGG - chr6_3:1554988-1555007 None:intergenic 45.0%
ATGTGAAAAACCTCACCTGC+TGG - chr6_3:1555019-1555038 None:intergenic 45.0%
GTGACAAGTAGGGTTGCTTA+TGG - chr6_3:1555362-1555381 None:intergenic 45.0%
! AGCTTAATGCATTTGGTGGC+AGG + chr6_3:1556087-1556106 Msa0933050:intron 45.0%
CCCTTGGTAAGTCTCTCTAA+TGG + chr6_3:1556233-1556252 Msa0933050:intron 45.0%
TGTGGTCCTAATTTGGTTGC+AGG + chr6_3:1556429-1556448 Msa0933050:intron 45.0%
GCAGTTCCTGCAACCAAATT+AGG - chr6_3:1556438-1556457 None:intergenic 45.0%
GGAACTGCTATTGCACTTGT+TGG + chr6_3:1556450-1556469 Msa0933050:intron 45.0%
TAAGCCAGTGCCAAAGACAA+AGG + chr6_3:1556503-1556522 Msa0933050:CDS 45.0%
!!! TTTTTTGTTGGGTGAGGGGT+TGG + chr6_3:1556637-1556656 Msa0933050:three_prime_UTR 45.0%
!! ATTTAAATAAATAGTATATT+TGG + chr6_3:1555683-1555702 Msa0933050:intron 5.0%
!!! TTTATTTTTATTTTTTTTGT+TGG + chr6_3:1556625-1556644 Msa0933050:three_prime_UTR 5.0%
!!! TTATTTTTATTTTTTTTGTT+GGG + chr6_3:1556626-1556645 Msa0933050:three_prime_UTR 5.0%
! TGCTGCTTCTTCTGTTCCTG+AGG + chr6_3:1551277-1551296 Msa0933050:CDS 50.0%
CTGAGGCACAGAGTGATGAA+GGG + chr6_3:1551294-1551313 Msa0933050:CDS 50.0%
! GCGTGAGTTAGATTCTGGAG+TGG + chr6_3:1551893-1551912 Msa0933050:intron 50.0%
!! TTCTGGAGTGGGAAGGGAAT+AGG + chr6_3:1551905-1551924 Msa0933050:intron 50.0%
! TCTGGAGTGGGAAGGGAATA+GGG + chr6_3:1551906-1551925 Msa0933050:intron 50.0%
ACGACACTGAAACGTCGACA+AGG - chr6_3:1552094-1552113 None:intergenic 50.0%
AATGTATGAGCCACGGCAAG+TGG - chr6_3:1553123-1553142 None:intergenic 50.0%
ACTTGCCGTGGCTCATACAT+TGG + chr6_3:1553122-1553141 Msa0933050:CDS 50.0%
CTTGCCGTGGCTCATACATT+GGG + chr6_3:1553123-1553142 Msa0933050:CDS 50.0%
GATGAACGGAAGACACATCC+AGG - chr6_3:1553433-1553452 None:intergenic 50.0%
TTCCCTCTGTTTGTCTCTGC+TGG - chr6_3:1553579-1553598 None:intergenic 50.0%
TGACACCGCCTCGTACATTT+AGG + chr6_3:1553633-1553652 Msa0933050:intron 50.0%
TCTACCTATAGTTGGGGGAG+TGG + chr6_3:1553965-1553984 Msa0933050:CDS 50.0%
AATGCCACTCCCCCAACTAT+AGG - chr6_3:1553972-1553991 None:intergenic 50.0%
TATAGTTGGGGGAGTGGCAT+TGG + chr6_3:1553971-1553990 Msa0933050:CDS 50.0%
ACTGCAGATTGCAGGTACGA+AGG - chr6_3:1554613-1554632 None:intergenic 50.0%
GTCCCCACGAAAGCAAAACA+AGG + chr6_3:1554747-1554766 Msa0933050:intron 50.0%
! GTGCCGACCTCCATGATAAA+AGG - chr6_3:1555830-1555849 None:intergenic 50.0%
TCACCTGTGACACACTCAGT+CGG + chr6_3:1556136-1556155 Msa0933050:CDS 50.0%
TTTCCGACTGAGTGTGTCAC+AGG - chr6_3:1556142-1556161 None:intergenic 50.0%
TGACAGGTGAGACAGGAGTT+TGG - chr6_3:1556210-1556229 None:intergenic 50.0%
!! GACTTACCAAGGGCATTGAC+AGG - chr6_3:1556226-1556245 None:intergenic 50.0%
GCTTCCTTTGTCTTTGGCAC+TGG - chr6_3:1556510-1556529 None:intergenic 50.0%
CCTTCATCACTCTGTGCCTC+AGG - chr6_3:1551296-1551315 None:intergenic 55.0%
CCTGAGGCACAGAGTGATGA+AGG + chr6_3:1551293-1551312 Msa0933050:CDS 55.0%
CGACGTTTCAGTGTCGTGTC+CGG + chr6_3:1552097-1552116 Msa0933050:intron 55.0%
CCAACGAAGCAAAGCCGAAC+TGG - chr6_3:1552904-1552923 None:intergenic 55.0%
CCAGTTCGGCTTTGCTTCGT+TGG + chr6_3:1552901-1552920 Msa0933050:CDS 55.0%
TATGAGCCACGGCAAGTGGA+AGG - chr6_3:1553119-1553138 None:intergenic 55.0%
CTGCTTCCATGCATACCAGC+AGG + chr6_3:1555001-1555020 Msa0933050:CDS 55.0%
TCCATGCATACCAGCAGGTG+AGG + chr6_3:1555006-1555025 Msa0933050:intron 55.0%
ACCTCACCTGCTGGTATGCA+TGG - chr6_3:1555010-1555029 None:intergenic 55.0%
!! AGGGCATTGACAGGTGAGAC+AGG - chr6_3:1556217-1556236 None:intergenic 55.0%
GTCTCACCTGTCAATGCCCT+TGG + chr6_3:1556217-1556236 Msa0933050:CDS 55.0%
CGTTTCAGTGTCGTGTCCGG+TGG + chr6_3:1552100-1552119 Msa0933050:intron 60.0%
GGCAATCCTTCCACTTGCCG+TGG + chr6_3:1553110-1553129 Msa0933050:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 1550964 1556824 1550964 ID=Msa0933050;Name=Msa0933050
chr6_3 mRNA 1550964 1556824 1550964 ID=Msa0933050-mRNA-1;Parent=Msa0933050;Name=Msa0933050-mRNA-1;_AED=0.08;_eAED=0.08;_QI=35|1|1|1|1|1|9|291|424
chr6_3 exon 1550964 1551415 1550964 ID=Msa0933050-mRNA-1:exon:556;Parent=Msa0933050-mRNA-1
chr6_3 exon 1552860 1552982 1552860 ID=Msa0933050-mRNA-1:exon:557;Parent=Msa0933050-mRNA-1
chr6_3 exon 1553105 1553257 1553105 ID=Msa0933050-mRNA-1:exon:558;Parent=Msa0933050-mRNA-1
chr6_3 exon 1553936 1554021 1553936 ID=Msa0933050-mRNA-1:exon:559;Parent=Msa0933050-mRNA-1
chr6_3 exon 1554344 1554428 1554344 ID=Msa0933050-mRNA-1:exon:560;Parent=Msa0933050-mRNA-1
chr6_3 exon 1554511 1554630 1554511 ID=Msa0933050-mRNA-1:exon:561;Parent=Msa0933050-mRNA-1
chr6_3 exon 1554945 1555022 1554945 ID=Msa0933050-mRNA-1:exon:562;Parent=Msa0933050-mRNA-1
chr6_3 exon 1556109 1556238 1556109 ID=Msa0933050-mRNA-1:exon:563;Parent=Msa0933050-mRNA-1
chr6_3 exon 1556451 1556824 1556451 ID=Msa0933050-mRNA-1:exon:564;Parent=Msa0933050-mRNA-1
chr6_3 five_prime_UTR 1550964 1550998 1550964 ID=Msa0933050-mRNA-1:five_prime_utr;Parent=Msa0933050-mRNA-1
chr6_3 CDS 1550999 1551415 1550999 ID=Msa0933050-mRNA-1:cds;Parent=Msa0933050-mRNA-1
chr6_3 CDS 1552860 1552982 1552860 ID=Msa0933050-mRNA-1:cds;Parent=Msa0933050-mRNA-1
chr6_3 CDS 1553105 1553257 1553105 ID=Msa0933050-mRNA-1:cds;Parent=Msa0933050-mRNA-1
chr6_3 CDS 1553936 1554021 1553936 ID=Msa0933050-mRNA-1:cds;Parent=Msa0933050-mRNA-1
chr6_3 CDS 1554344 1554428 1554344 ID=Msa0933050-mRNA-1:cds;Parent=Msa0933050-mRNA-1
chr6_3 CDS 1554511 1554630 1554511 ID=Msa0933050-mRNA-1:cds;Parent=Msa0933050-mRNA-1
chr6_3 CDS 1554945 1555022 1554945 ID=Msa0933050-mRNA-1:cds;Parent=Msa0933050-mRNA-1
chr6_3 CDS 1556109 1556238 1556109 ID=Msa0933050-mRNA-1:cds;Parent=Msa0933050-mRNA-1
chr6_3 CDS 1556451 1556533 1556451 ID=Msa0933050-mRNA-1:cds;Parent=Msa0933050-mRNA-1
chr6_3 three_prime_UTR 1556534 1556824 1556534 ID=Msa0933050-mRNA-1:three_prime_utr;Parent=Msa0933050-mRNA-1
Gene Sequence

>Msa0933050

ATGCAACAAACAACTATGTCTCCTTATTTTCTCTCATCAAACCTCAACATGCATAATCTCTATGTCTCACCTTCTTCTTCAACCTTACACCTTTCAAACCACATAACCAAACCAAAATTTCACCCTTTTCAAAATACTCATTCTCACAATTTTTCTTCTTCACCACTTAGACTCACCATTGATGGATTTTCATGCCCATCTTCTTCTTTCTTCCAAACTGTTAGAAAATCTTCACCTTTCTTCATTTCAAATCCAAAAATGGATTCTTTTAGAGTCTTTGCTGCTTCTTCTGTTCCTGAGGCACAGAGTGATGAAGGGAAACAACAAACTTCTGGGCTTGTTCAGTCTCTTCAGCTTGGTTTCATGTTTGCTACTTGGTATCTCTTGAATATTTATTTCAACATTTACAACAAACAGGTTCTAAAAGTCTATCCATTTCCAGCAACAGTTACAACATTCCAGTTCGGCTTTGCTTCGTTGGTGATCAATTTGATCTGGACATTGAATCTTCATCCTAGACCAAAAATTAGTAGATCACAGCTTACGGCAATCCTTCCACTTGCCGTGGCTCATACATTGGGAAACCTTTTGACGAACATTAGTCTTGGCAAGGTTGCTGTTTCTTTCACTCACACCATCAAATCTATGGAACCTTTTTTCACTGTTGTTCTTTCATCTCTTCTTTTGGGTGAGATGCCTACTTTATGGGTGGTTTCTTCTCTTCTACCTATAGTTGGGGGAGTGGCATTGGCATCGATGACTGAAGTCTCTTTCAATTGGATTGGATTCAGCACTGCAATGGCTTCCAACCTTACGAATCAATCACGGAATGTTTTGAGCAAAAAACTAATGGCTAACGAAGAGGAAGCTTTGGACAATATCAATCTCTACTCAGTTATAACCATCATTTCATTTTTCCTGTTGGTACCATATGCTATATTTTCGGAGGGTGTCAAGTTTACTCCTTCGTACCTGCAATCTGCAGCAAGCCAAGGATTGAATGTTCGAGAGCTATGTATAAGATCCGTTTTGGCTGCATTCTGCTTCCATGCATACCAGCAGGTTTCATATGGGATATTAGAGAAAGTGTCACCTGTGACACACTCAGTCGGAAATTGCGTTAAGCGTGTCGTTGTCATCGTCTCTTCAGTTATCTTTTTCCAAACTCCTGTCTCACCTGTCAATGCCCTTGGAACTGCTATTGCACTTGTTGGAGTTTTCTTGTATTCAAGGGCAAAGAGGATTAAGCCAGTGCCAAAGACAAAGGAAGCATAA

Protein sequence

>Msa0933050

MQQTTMSPYFLSSNLNMHNLYVSPSSSTLHLSNHITKPKFHPFQNTHSHNFSSSPLRLTIDGFSCPSSSFFQTVRKSSPFFISNPKMDSFRVFAASSVPEAQSDEGKQQTSGLVQSLQLGFMFATWYLLNIYFNIYNKQVLKVYPFPATVTTFQFGFASLVINLIWTLNLHPRPKISRSQLTAILPLAVAHTLGNLLTNISLGKVAVSFTHTIKSMEPFFTVVLSSLLLGEMPTLWVVSSLLPIVGGVALASMTEVSFNWIGFSTAMASNLTNQSRNVLSKKLMANEEEALDNINLYSVITIISFFLLVPYAIFSEGVKFTPSYLQSAASQGLNVRELCIRSVLAAFCFHAYQQVSYGILEKVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNALGTAIALVGVFLYSRAKRIKPVPKTKEA*