AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163960 MtrunA17_Chr1g0179231 98.624 218 3 0 1 218 1 218 5.85e-160 441
Msa0163960 MtrunA17_Chr1g0179681 35.294 153 85 7 32 178 87 231 1.82e-15 73.2
Msa0163960 MtrunA17_Chr3g0102841 31.056 161 88 4 61 215 61 204 1.41e-14 69.7
Msa0163960 MtrunA17_Chr7g0214751 29.208 202 120 6 26 213 43 235 4.26e-13 66.2
Msa0163960 MtrunA17_Chr7g0234801 33.588 131 78 3 49 178 5 127 9.87e-13 66.6
Msa0163960 MtrunA17_Chr8g0377771 35.669 157 80 9 61 211 23 164 2.02e-12 65.9
Msa0163960 MtrunA17_Chr8g0392891 32.031 128 72 4 59 177 117 238 7.74e-12 62.8
Msa0163960 MtrunA17_Chr5g0396231 35.537 121 45 3 96 216 413 500 8.79e-12 63.9
Msa0163960 MtrunA17_Chr8g0335211 33.594 128 68 5 79 204 100 212 1.45e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163960 AT4G19830.1 71.505 186 42 1 32 217 52 226 2.08e-91 268
Msa0163960 AT4G26555.2 33.750 160 86 5 55 213 18 158 1.86e-18 79.3
Msa0163960 AT4G26555.1 33.750 160 86 5 55 213 64 204 2.16e-18 80.5
Msa0163960 AT5G48570.1 34.000 150 65 4 68 216 37 153 1.73e-14 72.0
Msa0163960 AT3G10060.1 36.975 119 66 4 63 178 92 204 1.94e-14 70.1
Msa0163960 AT5G13410.1 32.903 155 91 5 64 213 105 251 7.55e-14 68.9
Msa0163960 AT3G25230.1 40.196 102 51 4 79 178 39 132 7.06e-13 67.4
Msa0163960 AT3G25230.2 40.196 102 51 4 79 178 39 132 8.84e-13 67.0
Msa0163960 AT5G05420.1 30.137 146 67 4 73 216 31 143 1.82e-12 63.2
Msa0163960 AT3G60370.1 31.298 131 57 4 87 217 129 226 9.38e-12 62.8
Msa0163960 AT3G60370.2 31.298 131 57 4 87 217 158 255 1.11e-11 63.2
Msa0163960 AT1G18170.1 34.884 129 73 4 59 178 104 230 1.34e-11 62.4

Find 67 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAATGAAATTTATATTTA+AGG 0.075803 1_4:+42490276 Msa0163960:three_prime_UTR
AATGGTGAAGGTTCGACTTT+AGG 0.241757 1_4:+42490084 Msa0163960:CDS
TTCTCTGAACTCCCCAATTC+TGG 0.241954 1_4:+42488798 Msa0163960:CDS
TTTGTCTTTGTCCTTGGTTC+TGG 0.255718 1_4:+42489226 Msa0163960:CDS
AAAGTTTAAGTATCAATGTT+AGG 0.267247 1_4:+42488551 None:intergenic
TTGGAACTCCTTGTTGGTTC+AGG 0.280949 1_4:+42488834 Msa0163960:CDS
ATGGTGAAGGTTCGACTTTA+GGG 0.294637 1_4:+42490085 Msa0163960:CDS
GGCCTTAACACCACCAGAAT+TGG 0.297767 1_4:-42488811 None:intergenic
TTTATCAATTTGTGAATTGC+AGG 0.338768 1_4:+42490246 Msa0163960:three_prime_UTR
TTCTGGTGGTGTTAAGGCCT+TGG 0.355031 1_4:+42488815 Msa0163960:CDS
ATTCTCATCTTTGTGGTCAT+AGG 0.366810 1_4:-42489188 None:intergenic
GCCTTAACACCACCAGAATT+GGG 0.386314 1_4:-42488810 None:intergenic
CCCCAATTCTGGTGGTGTTA+AGG 0.386678 1_4:+42488809 Msa0163960:CDS
TGCTGTGTTCAGGTAATTGC+TGG 0.390936 1_4:+42489700 Msa0163960:intron
AGAAGGTGAAGGAGAAGAAT+AGG 0.395312 1_4:-42488754 None:intergenic
CTTTGTCCTTGGTTCTGGTA+AGG 0.410071 1_4:+42489231 Msa0163960:CDS
ACTTATATTTGATATTGAAC+TGG 0.414468 1_4:+42490110 Msa0163960:CDS
ATAATAAAATACTGTGTCCT+TGG 0.418797 1_4:+42488600 Msa0163960:CDS
GGTCTTCTTGTTATGTTACA+TGG 0.420319 1_4:-42488666 None:intergenic
GATCACCATTCTCATCTTTG+TGG 0.422175 1_4:-42489195 None:intergenic
AAGGCCTTGGAACTCCTTGT+TGG 0.425790 1_4:+42488828 Msa0163960:CDS
TTGTTTGTTTACTAGATGGC+TGG 0.432490 1_4:-42490165 None:intergenic
GTGTTTGTTTGTTTACTAGA+TGG 0.436943 1_4:-42490169 None:intergenic
AGTTCAGAGAAATCTGCTAT+TGG 0.443056 1_4:-42488786 None:intergenic
GAGATTAGAGACAGAGATAA+GGG 0.448579 1_4:-42488687 None:intergenic
AGGACAAAGACAAAAGGATT+AGG 0.454496 1_4:-42489217 None:intergenic
AAGGTTGAGATTCATTACTA+TGG 0.463418 1_4:+42489127 Msa0163960:intron
GAAGAATAGGAAGGTGGAAG+AGG 0.466133 1_4:-42488741 None:intergenic
AAGTTTAAGTATCAATGTTA+GGG 0.469362 1_4:+42488552 None:intergenic
TTTCTTACATTAGGCGGGAT+AGG 0.475564 1_4:-42489814 None:intergenic
AATCCGACTCGACTTGCAAA+TGG 0.488064 1_4:+42490066 Msa0163960:CDS
GTCATCATACCTCCCTCACT+TGG 0.492147 1_4:+42489769 Msa0163960:CDS
ATTCACAAATTGATAAATGC+TGG 0.499046 1_4:-42490240 None:intergenic
AGAGATTAGAGACAGAGATA+AGG 0.501803 1_4:-42488688 None:intergenic
AAAAGTTCTTTGACAGGCAG+AGG 0.504470 1_4:+42490025 Msa0163960:intron
AAATCGAGCAATATACTACC+TGG 0.512956 1_4:-42490302 None:intergenic
AAGGATTTCTTACATTAGGC+GGG 0.525661 1_4:-42489819 None:intergenic
ATATTTGATATTGAACTGGT+TGG 0.533481 1_4:+42490114 Msa0163960:CDS
AAAGGATTTCTTACATTAGG+CGG 0.534022 1_4:-42489820 None:intergenic
GAACCAAGGACAAAGACAAA+AGG 0.544303 1_4:-42489223 None:intergenic
TCAGGTGAAGTTCCTCAAGA+TGG 0.562507 1_4:+42488852 Msa0163960:CDS
TCTGAACTCCCCAATTCTGG+TGG 0.572089 1_4:+42488801 Msa0163960:CDS
TATGACCACAAAGATGAGAA+TGG 0.579877 1_4:+42489190 Msa0163960:CDS
GAAGGAGAAGAATAGGAAGG+TGG 0.580002 1_4:-42488747 None:intergenic
GGTAGACTTGCAGCAAAACA+AGG 0.581972 1_4:+42489148 Msa0163960:CDS
GGTGAAGGAGAAGAATAGGA+AGG 0.585572 1_4:-42488750 None:intergenic
ACACACGTGTTGCACTTCCA+AGG 0.590396 1_4:-42488617 None:intergenic
TCACCATTTGCAAGTCGAGT+CGG 0.591167 1_4:-42490069 None:intergenic
ACTCGACTTGCAAATGGTGA+AGG 0.607106 1_4:+42490072 Msa0163960:CDS
GACTTGCAGCAAAACAAGGA+TGG 0.607232 1_4:+42489152 Msa0163960:CDS
TATACCTGGTCTCCATCTTG+AGG 0.616605 1_4:-42488864 None:intergenic
TTCTGATACCCAAGTGAGGG+AGG 0.616633 1_4:-42489778 None:intergenic
TCATCATACCTCCCTCACTT+GGG 0.617977 1_4:+42489770 Msa0163960:CDS
TGAACCAACAAGGAGTTCCA+AGG 0.619826 1_4:-42488832 None:intergenic
CCTTAACACCACCAGAATTG+GGG 0.629737 1_4:-42488809 None:intergenic
ATATTGAACTGGTTGGTCTG+AGG 0.637937 1_4:+42490121 Msa0163960:CDS
AATCGAGCAATATACTACCT+GGG 0.638861 1_4:-42490301 None:intergenic
AATTTATATTTAAGGAACCC+AGG 0.642409 1_4:+42490284 Msa0163960:three_prime_UTR
TGGGTATCAGAACACATCAC+AGG 0.647520 1_4:+42489789 Msa0163960:CDS
GAACTTCACCTGAACCAACA+AGG 0.650571 1_4:-42488842 None:intergenic
AGTTCCTCAAGATGGAGACC+AGG 0.651081 1_4:+42488860 Msa0163960:CDS
GTGAGATCAATGAAAGTCGG+TGG 0.665800 1_4:+42489736 Msa0163960:CDS
AGCTTACCTTACCAGAACCA+AGG 0.667313 1_4:-42489237 None:intergenic
GGTAATTGCTGGAATTGATG+TGG 0.679818 1_4:+42489711 Msa0163960:intron
GTGTTCTGATACCCAAGTGA+GGG 0.691969 1_4:-42489781 None:intergenic
GCAGTGAGATCAATGAAAGT+CGG 0.693946 1_4:+42489733 Msa0163960:CDS
TGTGTTCTGATACCCAAGTG+AGG 0.735364 1_4:-42489782 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACATTAGCATTAATTTAA+AGG - chr1_4:42488897-42488916 None:intergenic 15.0%
!!! TTATAGATAATTTAATGGAT+AGG + chr1_4:42489023-42489042 Msa0163960:intron 15.0%
!! AAAAATTTCAGACTTATATA+TGG + chr1_4:42489591-42489610 Msa0163960:intron 15.0%
!! TTACATTAGCATTAATTTAA+AGG - chr1_4:42488897-42488916 None:intergenic 15.0%
!!! TTATAGATAATTTAATGGAT+AGG + chr1_4:42489023-42489042 Msa0163960:intron 15.0%
!! AAAAATTTCAGACTTATATA+TGG + chr1_4:42489591-42489610 Msa0163960:intron 15.0%
!!! AACCATATATTCTAAAATGA+TGG - chr1_4:42488936-42488955 None:intergenic 20.0%
!! AAAACAAAACATGTTTATCA+AGG - chr1_4:42488964-42488983 None:intergenic 20.0%
!! TTGATTATAACCAGTAAATT+TGG + chr1_4:42489259-42489278 Msa0163960:intron 20.0%
!!! CAAACTTATTTTGATCATTT+GGG - chr1_4:42489425-42489444 None:intergenic 20.0%
!!! ACAAACTTATTTTGATCATT+TGG - chr1_4:42489426-42489445 None:intergenic 20.0%
!! ATAAAAGGATTTCTTACATT+AGG - chr1_4:42489826-42489845 None:intergenic 20.0%
!! ACTTATATTTGATATTGAAC+TGG + chr1_4:42490110-42490129 Msa0163960:CDS 20.0%
!!! AAACACTTTCTTTTTTATGA+GGG + chr1_4:42490186-42490205 Msa0163960:three_prime_UTR 20.0%
!!! AACCATATATTCTAAAATGA+TGG - chr1_4:42488936-42488955 None:intergenic 20.0%
!! AAAACAAAACATGTTTATCA+AGG - chr1_4:42488964-42488983 None:intergenic 20.0%
!! TTGATTATAACCAGTAAATT+TGG + chr1_4:42489259-42489278 Msa0163960:intron 20.0%
!!! CAAACTTATTTTGATCATTT+GGG - chr1_4:42489425-42489444 None:intergenic 20.0%
!!! ACAAACTTATTTTGATCATT+TGG - chr1_4:42489426-42489445 None:intergenic 20.0%
!! ATAAAAGGATTTCTTACATT+AGG - chr1_4:42489826-42489845 None:intergenic 20.0%
!! ACTTATATTTGATATTGAAC+TGG + chr1_4:42490110-42490129 Msa0163960:CDS 20.0%
!!! AAACACTTTCTTTTTTATGA+GGG + chr1_4:42490186-42490205 Msa0163960:three_prime_UTR 20.0%
! ATAATAAAATACTGTGTCCT+TGG + chr1_4:42488600-42488619 Msa0163960:CDS 25.0%
!!! TGCCATCATTTTAGAATATA+TGG + chr1_4:42488931-42488950 Msa0163960:intron 25.0%
!! GATAATTTAATGGATAGGTA+AGG + chr1_4:42489028-42489047 Msa0163960:intron 25.0%
! AGTAAATGTTGTTACATTGA+AGG + chr1_4:42489108-42489127 Msa0163960:intron 25.0%
! TATAACCAGTAAATTTGGTT+TGG + chr1_4:42489264-42489283 Msa0163960:intron 25.0%
!!! CATACTAAGTTTTTTCCATA+AGG + chr1_4:42489563-42489582 Msa0163960:intron 25.0%
!! TGAAATTTTTACTGTCCTTA+TGG - chr1_4:42489581-42489600 None:intergenic 25.0%
! ATGTAATTCTGGATCATAAA+AGG - chr1_4:42489841-42489860 None:intergenic 25.0%
! AAACAAAAAAGTTCTTTGAC+AGG + chr1_4:42490019-42490038 Msa0163960:intron 25.0%
! ATATTTGATATTGAACTGGT+TGG + chr1_4:42490114-42490133 Msa0163960:CDS 25.0%
!!! CAAACACTTTCTTTTTTATG+AGG + chr1_4:42490185-42490204 Msa0163960:three_prime_UTR 25.0%
!!! AACACTTTCTTTTTTATGAG+GGG + chr1_4:42490187-42490206 Msa0163960:three_prime_UTR 25.0%
! ATTCACAAATTGATAAATGC+TGG - chr1_4:42490243-42490262 None:intergenic 25.0%
! TTTATCAATTTGTGAATTGC+AGG + chr1_4:42490246-42490265 Msa0163960:three_prime_UTR 25.0%
! AATTTATATTTAAGGAACCC+AGG + chr1_4:42490284-42490303 Msa0163960:three_prime_UTR 25.0%
! ATAATAAAATACTGTGTCCT+TGG + chr1_4:42488600-42488619 Msa0163960:CDS 25.0%
!!! TGCCATCATTTTAGAATATA+TGG + chr1_4:42488931-42488950 Msa0163960:intron 25.0%
!! GATAATTTAATGGATAGGTA+AGG + chr1_4:42489028-42489047 Msa0163960:intron 25.0%
! AGTAAATGTTGTTACATTGA+AGG + chr1_4:42489108-42489127 Msa0163960:intron 25.0%
! TATAACCAGTAAATTTGGTT+TGG + chr1_4:42489264-42489283 Msa0163960:intron 25.0%
!!! CATACTAAGTTTTTTCCATA+AGG + chr1_4:42489563-42489582 Msa0163960:intron 25.0%
!! TGAAATTTTTACTGTCCTTA+TGG - chr1_4:42489581-42489600 None:intergenic 25.0%
! ATGTAATTCTGGATCATAAA+AGG - chr1_4:42489841-42489860 None:intergenic 25.0%
! AAACAAAAAAGTTCTTTGAC+AGG + chr1_4:42490019-42490038 Msa0163960:intron 25.0%
! ATATTTGATATTGAACTGGT+TGG + chr1_4:42490114-42490133 Msa0163960:CDS 25.0%
!!! CAAACACTTTCTTTTTTATG+AGG + chr1_4:42490185-42490204 Msa0163960:three_prime_UTR 25.0%
!!! AACACTTTCTTTTTTATGAG+GGG + chr1_4:42490187-42490206 Msa0163960:three_prime_UTR 25.0%
! ATTCACAAATTGATAAATGC+TGG - chr1_4:42490243-42490262 None:intergenic 25.0%
! TTTATCAATTTGTGAATTGC+AGG + chr1_4:42490246-42490265 Msa0163960:three_prime_UTR 25.0%
! AATTTATATTTAAGGAACCC+AGG + chr1_4:42490284-42490303 Msa0163960:three_prime_UTR 25.0%
! TACATGGATATTTTGTGTGA+GGG - chr1_4:42488653-42488672 None:intergenic 30.0%
! TTACATGGATATTTTGTGTG+AGG - chr1_4:42488654-42488673 None:intergenic 30.0%
TTAAAGGAGAGAATTATACC+TGG - chr1_4:42488881-42488900 None:intergenic 30.0%
!!! CATGTTTTGTTTTGCTTTGT+TGG + chr1_4:42488971-42488990 Msa0163960:intron 30.0%
AAGGTTGAGATTCATTACTA+TGG + chr1_4:42489127-42489146 Msa0163960:intron 30.0%
AAACACCAAACCAAATTTAC+TGG - chr1_4:42489272-42489291 None:intergenic 30.0%
CAGACTTATATATGGATCTT+TGG + chr1_4:42489599-42489618 Msa0163960:intron 30.0%
CTTAGTATGCAACATGATAA+AGG - chr1_4:42489653-42489672 None:intergenic 30.0%
AGAAGTTAATCTTGTGAGAA+TGG + chr1_4:42489675-42489694 Msa0163960:intron 30.0%
AAAGGATTTCTTACATTAGG+CGG - chr1_4:42489823-42489842 None:intergenic 30.0%
CAAACGTAACTATGTAATTC+TGG - chr1_4:42489852-42489871 None:intergenic 30.0%
GTGTTTGTTTGTTTACTAGA+TGG - chr1_4:42490172-42490191 None:intergenic 30.0%
! TACATGGATATTTTGTGTGA+GGG - chr1_4:42488653-42488672 None:intergenic 30.0%
! TTACATGGATATTTTGTGTG+AGG - chr1_4:42488654-42488673 None:intergenic 30.0%
TTAAAGGAGAGAATTATACC+TGG - chr1_4:42488881-42488900 None:intergenic 30.0%
!!! CATGTTTTGTTTTGCTTTGT+TGG + chr1_4:42488971-42488990 Msa0163960:intron 30.0%
AAGGTTGAGATTCATTACTA+TGG + chr1_4:42489127-42489146 Msa0163960:intron 30.0%
AAACACCAAACCAAATTTAC+TGG - chr1_4:42489272-42489291 None:intergenic 30.0%
CAGACTTATATATGGATCTT+TGG + chr1_4:42489599-42489618 Msa0163960:intron 30.0%
CTTAGTATGCAACATGATAA+AGG - chr1_4:42489653-42489672 None:intergenic 30.0%
AGAAGTTAATCTTGTGAGAA+TGG + chr1_4:42489675-42489694 Msa0163960:intron 30.0%
AAAGGATTTCTTACATTAGG+CGG - chr1_4:42489823-42489842 None:intergenic 30.0%
CAAACGTAACTATGTAATTC+TGG - chr1_4:42489852-42489871 None:intergenic 30.0%
GTGTTTGTTTGTTTACTAGA+TGG - chr1_4:42490172-42490191 None:intergenic 30.0%
! GGTCTTCTTGTTATGTTACA+TGG - chr1_4:42488669-42488688 None:intergenic 35.0%
GAGATTAGAGACAGAGATAA+GGG - chr1_4:42488690-42488709 None:intergenic 35.0%
AGAGATTAGAGACAGAGATA+AGG - chr1_4:42488691-42488710 None:intergenic 35.0%
AGTTCAGAGAAATCTGCTAT+TGG - chr1_4:42488789-42488808 None:intergenic 35.0%
GGTAGAGTATGAGAATTTGT+AGG + chr1_4:42488992-42489011 Msa0163960:intron 35.0%
ATTCTCATCTTTGTGGTCAT+AGG - chr1_4:42489191-42489210 None:intergenic 35.0%
TATGACCACAAAGATGAGAA+TGG + chr1_4:42489190-42489209 Msa0163960:CDS 35.0%
AGGACAAAGACAAAAGGATT+AGG - chr1_4:42489220-42489239 None:intergenic 35.0%
! AATCCTTTTGTCTTTGTCCT+TGG + chr1_4:42489220-42489239 Msa0163960:CDS 35.0%
! CTTAATTGCTTCTTGAGTTG+TGG - chr1_4:42489499-42489518 None:intergenic 35.0%
GAAGCAATTAAGCATCAATG+TGG + chr1_4:42489507-42489526 Msa0163960:intron 35.0%
! ATGCAACATGATAAAGGCAT+AGG - chr1_4:42489647-42489666 None:intergenic 35.0%
AAGGATTTCTTACATTAGGC+GGG - chr1_4:42489822-42489841 None:intergenic 35.0%
AAGTCGAGTCGGATTAAAAA+TGG - chr1_4:42490061-42490080 None:intergenic 35.0%
TTGTTTGTTTACTAGATGGC+TGG - chr1_4:42490168-42490187 None:intergenic 35.0%
!!! ACTTTCTTTTTTATGAGGGG+TGG + chr1_4:42490190-42490209 Msa0163960:three_prime_UTR 35.0%
AATCGAGCAATATACTACCT+GGG - chr1_4:42490304-42490323 None:intergenic 35.0%
AAATCGAGCAATATACTACC+TGG - chr1_4:42490305-42490324 None:intergenic 35.0%
! GGTCTTCTTGTTATGTTACA+TGG - chr1_4:42488669-42488688 None:intergenic 35.0%
GAGATTAGAGACAGAGATAA+GGG - chr1_4:42488690-42488709 None:intergenic 35.0%
AGAGATTAGAGACAGAGATA+AGG - chr1_4:42488691-42488710 None:intergenic 35.0%
AGTTCAGAGAAATCTGCTAT+TGG - chr1_4:42488789-42488808 None:intergenic 35.0%
GGTAGAGTATGAGAATTTGT+AGG + chr1_4:42488992-42489011 Msa0163960:intron 35.0%
ATTCTCATCTTTGTGGTCAT+AGG - chr1_4:42489191-42489210 None:intergenic 35.0%
TATGACCACAAAGATGAGAA+TGG + chr1_4:42489190-42489209 Msa0163960:CDS 35.0%
AGGACAAAGACAAAAGGATT+AGG - chr1_4:42489220-42489239 None:intergenic 35.0%
! AATCCTTTTGTCTTTGTCCT+TGG + chr1_4:42489220-42489239 Msa0163960:CDS 35.0%
! CTTAATTGCTTCTTGAGTTG+TGG - chr1_4:42489499-42489518 None:intergenic 35.0%
GAAGCAATTAAGCATCAATG+TGG + chr1_4:42489507-42489526 Msa0163960:intron 35.0%
! ATGCAACATGATAAAGGCAT+AGG - chr1_4:42489647-42489666 None:intergenic 35.0%
AAGGATTTCTTACATTAGGC+GGG - chr1_4:42489822-42489841 None:intergenic 35.0%
AAGTCGAGTCGGATTAAAAA+TGG - chr1_4:42490061-42490080 None:intergenic 35.0%
TTGTTTGTTTACTAGATGGC+TGG - chr1_4:42490168-42490187 None:intergenic 35.0%
!!! ACTTTCTTTTTTATGAGGGG+TGG + chr1_4:42490190-42490209 Msa0163960:three_prime_UTR 35.0%
AATCGAGCAATATACTACCT+GGG - chr1_4:42490304-42490323 None:intergenic 35.0%
AAATCGAGCAATATACTACC+TGG - chr1_4:42490305-42490324 None:intergenic 35.0%
! ATATTTTGTGTGAGGGAGAG+TGG - chr1_4:42488646-42488665 None:intergenic 40.0%
AGAAGGTGAAGGAGAAGAAT+AGG - chr1_4:42488757-42488776 None:intergenic 40.0%
!!! GCTATTGGACGTTTTGAAGA+AGG - chr1_4:42488774-42488793 None:intergenic 40.0%
GATCACCATTCTCATCTTTG+TGG - chr1_4:42489198-42489217 None:intergenic 40.0%
GAACCAAGGACAAAGACAAA+AGG - chr1_4:42489226-42489245 None:intergenic 40.0%
TTTGTCTTTGTCCTTGGTTC+TGG + chr1_4:42489226-42489245 Msa0163960:CDS 40.0%
GGTAATTGCTGGAATTGATG+TGG + chr1_4:42489711-42489730 Msa0163960:intron 40.0%
GCAGTGAGATCAATGAAAGT+CGG + chr1_4:42489733-42489752 Msa0163960:CDS 40.0%
TTTCTTACATTAGGCGGGAT+AGG - chr1_4:42489817-42489836 None:intergenic 40.0%
AAAAGTTCTTTGACAGGCAG+AGG + chr1_4:42490025-42490044 Msa0163960:intron 40.0%
AATGGTGAAGGTTCGACTTT+AGG + chr1_4:42490084-42490103 Msa0163960:CDS 40.0%
ATGGTGAAGGTTCGACTTTA+GGG + chr1_4:42490085-42490104 Msa0163960:CDS 40.0%
!! ATATTGAACTGGTTGGTCTG+AGG + chr1_4:42490121-42490140 Msa0163960:CDS 40.0%
! ATATTTTGTGTGAGGGAGAG+TGG - chr1_4:42488646-42488665 None:intergenic 40.0%
AGAAGGTGAAGGAGAAGAAT+AGG - chr1_4:42488757-42488776 None:intergenic 40.0%
!!! GCTATTGGACGTTTTGAAGA+AGG - chr1_4:42488774-42488793 None:intergenic 40.0%
GATCACCATTCTCATCTTTG+TGG - chr1_4:42489198-42489217 None:intergenic 40.0%
GAACCAAGGACAAAGACAAA+AGG - chr1_4:42489226-42489245 None:intergenic 40.0%
TTTGTCTTTGTCCTTGGTTC+TGG + chr1_4:42489226-42489245 Msa0163960:CDS 40.0%
GGTAATTGCTGGAATTGATG+TGG + chr1_4:42489711-42489730 Msa0163960:intron 40.0%
GCAGTGAGATCAATGAAAGT+CGG + chr1_4:42489733-42489752 Msa0163960:CDS 40.0%
TTTCTTACATTAGGCGGGAT+AGG - chr1_4:42489817-42489836 None:intergenic 40.0%
AAAAGTTCTTTGACAGGCAG+AGG + chr1_4:42490025-42490044 Msa0163960:intron 40.0%
AATGGTGAAGGTTCGACTTT+AGG + chr1_4:42490084-42490103 Msa0163960:CDS 40.0%
ATGGTGAAGGTTCGACTTTA+GGG + chr1_4:42490085-42490104 Msa0163960:CDS 40.0%
!! ATATTGAACTGGTTGGTCTG+AGG + chr1_4:42490121-42490140 Msa0163960:CDS 40.0%
GAAGAATAGGAAGGTGGAAG+AGG - chr1_4:42488744-42488763 None:intergenic 45.0%
GAAGGAGAAGAATAGGAAGG+TGG - chr1_4:42488750-42488769 None:intergenic 45.0%
GGTGAAGGAGAAGAATAGGA+AGG - chr1_4:42488753-42488772 None:intergenic 45.0%
!!! GGACGTTTTGAAGAAGGTGA+AGG - chr1_4:42488768-42488787 None:intergenic 45.0%
TTCTCTGAACTCCCCAATTC+TGG + chr1_4:42488798-42488817 Msa0163960:CDS 45.0%
CCTTAACACCACCAGAATTG+GGG - chr1_4:42488812-42488831 None:intergenic 45.0%
GCCTTAACACCACCAGAATT+GGG - chr1_4:42488813-42488832 None:intergenic 45.0%
TGAACCAACAAGGAGTTCCA+AGG - chr1_4:42488835-42488854 None:intergenic 45.0%
!! TTGGAACTCCTTGTTGGTTC+AGG + chr1_4:42488834-42488853 Msa0163960:CDS 45.0%
GAACTTCACCTGAACCAACA+AGG - chr1_4:42488845-42488864 None:intergenic 45.0%
TCAGGTGAAGTTCCTCAAGA+TGG + chr1_4:42488852-42488871 Msa0163960:CDS 45.0%
TATACCTGGTCTCCATCTTG+AGG - chr1_4:42488867-42488886 None:intergenic 45.0%
GGTAGACTTGCAGCAAAACA+AGG + chr1_4:42489148-42489167 Msa0163960:CDS 45.0%
GACTTGCAGCAAAACAAGGA+TGG + chr1_4:42489152-42489171 Msa0163960:CDS 45.0%
!! CTTTGTCCTTGGTTCTGGTA+AGG + chr1_4:42489231-42489250 Msa0163960:CDS 45.0%
AGCTTACCTTACCAGAACCA+AGG - chr1_4:42489240-42489259 None:intergenic 45.0%
!! GAGAATGGATTGCTGTGTTC+AGG + chr1_4:42489690-42489709 Msa0163960:intron 45.0%
TGCTGTGTTCAGGTAATTGC+TGG + chr1_4:42489700-42489719 Msa0163960:intron 45.0%
GTGAGATCAATGAAAGTCGG+TGG + chr1_4:42489736-42489755 Msa0163960:CDS 45.0%
TCATCATACCTCCCTCACTT+GGG + chr1_4:42489770-42489789 Msa0163960:CDS 45.0%
GTGTTCTGATACCCAAGTGA+GGG - chr1_4:42489784-42489803 None:intergenic 45.0%
TGTGTTCTGATACCCAAGTG+AGG - chr1_4:42489785-42489804 None:intergenic 45.0%
TGGGTATCAGAACACATCAC+AGG + chr1_4:42489789-42489808 Msa0163960:CDS 45.0%
! AATCCGACTCGACTTGCAAA+TGG + chr1_4:42490066-42490085 Msa0163960:CDS 45.0%
TCACCATTTGCAAGTCGAGT+CGG - chr1_4:42490072-42490091 None:intergenic 45.0%
! ACTCGACTTGCAAATGGTGA+AGG + chr1_4:42490072-42490091 Msa0163960:CDS 45.0%
GAAGAATAGGAAGGTGGAAG+AGG - chr1_4:42488744-42488763 None:intergenic 45.0%
GAAGGAGAAGAATAGGAAGG+TGG - chr1_4:42488750-42488769 None:intergenic 45.0%
GGTGAAGGAGAAGAATAGGA+AGG - chr1_4:42488753-42488772 None:intergenic 45.0%
!!! GGACGTTTTGAAGAAGGTGA+AGG - chr1_4:42488768-42488787 None:intergenic 45.0%
TTCTCTGAACTCCCCAATTC+TGG + chr1_4:42488798-42488817 Msa0163960:CDS 45.0%
CCTTAACACCACCAGAATTG+GGG - chr1_4:42488812-42488831 None:intergenic 45.0%
GCCTTAACACCACCAGAATT+GGG - chr1_4:42488813-42488832 None:intergenic 45.0%
TGAACCAACAAGGAGTTCCA+AGG - chr1_4:42488835-42488854 None:intergenic 45.0%
!! TTGGAACTCCTTGTTGGTTC+AGG + chr1_4:42488834-42488853 Msa0163960:CDS 45.0%
GAACTTCACCTGAACCAACA+AGG - chr1_4:42488845-42488864 None:intergenic 45.0%
TCAGGTGAAGTTCCTCAAGA+TGG + chr1_4:42488852-42488871 Msa0163960:CDS 45.0%
TATACCTGGTCTCCATCTTG+AGG - chr1_4:42488867-42488886 None:intergenic 45.0%
GGTAGACTTGCAGCAAAACA+AGG + chr1_4:42489148-42489167 Msa0163960:CDS 45.0%
GACTTGCAGCAAAACAAGGA+TGG + chr1_4:42489152-42489171 Msa0163960:CDS 45.0%
!! CTTTGTCCTTGGTTCTGGTA+AGG + chr1_4:42489231-42489250 Msa0163960:CDS 45.0%
AGCTTACCTTACCAGAACCA+AGG - chr1_4:42489240-42489259 None:intergenic 45.0%
!! GAGAATGGATTGCTGTGTTC+AGG + chr1_4:42489690-42489709 Msa0163960:intron 45.0%
TGCTGTGTTCAGGTAATTGC+TGG + chr1_4:42489700-42489719 Msa0163960:intron 45.0%
GTGAGATCAATGAAAGTCGG+TGG + chr1_4:42489736-42489755 Msa0163960:CDS 45.0%
TCATCATACCTCCCTCACTT+GGG + chr1_4:42489770-42489789 Msa0163960:CDS 45.0%
GTGTTCTGATACCCAAGTGA+GGG - chr1_4:42489784-42489803 None:intergenic 45.0%
TGTGTTCTGATACCCAAGTG+AGG - chr1_4:42489785-42489804 None:intergenic 45.0%
TGGGTATCAGAACACATCAC+AGG + chr1_4:42489789-42489808 Msa0163960:CDS 45.0%
! AATCCGACTCGACTTGCAAA+TGG + chr1_4:42490066-42490085 Msa0163960:CDS 45.0%
TCACCATTTGCAAGTCGAGT+CGG - chr1_4:42490072-42490091 None:intergenic 45.0%
! ACTCGACTTGCAAATGGTGA+AGG + chr1_4:42490072-42490091 Msa0163960:CDS 45.0%
!! TTTATTTATAGATAATTTAA+TGG + chr1_4:42489018-42489037 Msa0163960:intron 5.0%
!! ATTAATGAAATTTATATTTA+AGG + chr1_4:42490276-42490295 Msa0163960:three_prime_UTR 5.0%
!! TTTATTTATAGATAATTTAA+TGG + chr1_4:42489018-42489037 Msa0163960:intron 5.0%
!! ATTAATGAAATTTATATTTA+AGG + chr1_4:42490276-42490295 Msa0163960:three_prime_UTR 5.0%
ACACACGTGTTGCACTTCCA+AGG - chr1_4:42488620-42488639 None:intergenic 50.0%
TCTGAACTCCCCAATTCTGG+TGG + chr1_4:42488801-42488820 Msa0163960:CDS 50.0%
! CCCCAATTCTGGTGGTGTTA+AGG + chr1_4:42488809-42488828 Msa0163960:CDS 50.0%
GGCCTTAACACCACCAGAAT+TGG - chr1_4:42488814-42488833 None:intergenic 50.0%
! TTCTGGTGGTGTTAAGGCCT+TGG + chr1_4:42488815-42488834 Msa0163960:CDS 50.0%
AAGGCCTTGGAACTCCTTGT+TGG + chr1_4:42488828-42488847 Msa0163960:CDS 50.0%
AGTTCCTCAAGATGGAGACC+AGG + chr1_4:42488860-42488879 Msa0163960:CDS 50.0%
GTCATCATACCTCCCTCACT+TGG + chr1_4:42489769-42489788 Msa0163960:CDS 50.0%
TTCTGATACCCAAGTGAGGG+AGG - chr1_4:42489781-42489800 None:intergenic 50.0%
ACACACGTGTTGCACTTCCA+AGG - chr1_4:42488620-42488639 None:intergenic 50.0%
TCTGAACTCCCCAATTCTGG+TGG + chr1_4:42488801-42488820 Msa0163960:CDS 50.0%
! CCCCAATTCTGGTGGTGTTA+AGG + chr1_4:42488809-42488828 Msa0163960:CDS 50.0%
GGCCTTAACACCACCAGAAT+TGG - chr1_4:42488814-42488833 None:intergenic 50.0%
! TTCTGGTGGTGTTAAGGCCT+TGG + chr1_4:42488815-42488834 Msa0163960:CDS 50.0%
AAGGCCTTGGAACTCCTTGT+TGG + chr1_4:42488828-42488847 Msa0163960:CDS 50.0%
AGTTCCTCAAGATGGAGACC+AGG + chr1_4:42488860-42488879 Msa0163960:CDS 50.0%
GTCATCATACCTCCCTCACT+TGG + chr1_4:42489769-42489788 Msa0163960:CDS 50.0%
TTCTGATACCCAAGTGAGGG+AGG - chr1_4:42489781-42489800 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 42488562 42490327 42488562 ID=Msa0163960;Name=Msa0163960
chr1_4 mRNA 42488562 42490327 42488562 ID=Msa0163960-mRNA-1;Parent=Msa0163960;Name=Msa0163960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=26|1|1|1|0.66|0.75|4|175|218
chr1_4 exon 42488562 42488881 42488562 ID=Msa0163960-mRNA-1:exon:12307;Parent=Msa0163960-mRNA-1
chr1_4 exon 42489130 42489252 42489130 ID=Msa0163960-mRNA-1:exon:12308;Parent=Msa0163960-mRNA-1
chr1_4 exon 42489712 42489828 42489712 ID=Msa0163960-mRNA-1:exon:12309;Parent=Msa0163960-mRNA-1
chr1_4 exon 42490030 42490327 42490030 ID=Msa0163960-mRNA-1:exon:12310;Parent=Msa0163960-mRNA-1
chr1_4 five_prime_UTR 42488562 42488587 42488562 ID=Msa0163960-mRNA-1:five_prime_utr;Parent=Msa0163960-mRNA-1
chr1_4 CDS 42488588 42488881 42488588 ID=Msa0163960-mRNA-1:cds;Parent=Msa0163960-mRNA-1
chr1_4 CDS 42489130 42489252 42489130 ID=Msa0163960-mRNA-1:cds;Parent=Msa0163960-mRNA-1
chr1_4 CDS 42489712 42489828 42489712 ID=Msa0163960-mRNA-1:cds;Parent=Msa0163960-mRNA-1
chr1_4 CDS 42490030 42490152 42490030 ID=Msa0163960-mRNA-1:cds;Parent=Msa0163960-mRNA-1
chr1_4 three_prime_UTR 42490153 42490327 42490153 ID=Msa0163960-mRNA-1:three_prime_utr;Parent=Msa0163960-mRNA-1
Gene Sequence

>Msa0163960

ATGAAGATGAAGATAATAAAATACTGTGTCCTTGGAAGTGCAACACGTGTGTGTGCCACTCTCCCTCACACAAAATATCCATGTAACATAACAAGAAGACCCTTATCTCTGTCTCTAATCTCTACTACTTTCTCTGCTTTAATCTTCTCACTTCCTCTTCCACCTTCCTATTCTTCTCCTTCACCTTCTTCAAAACGTCCAATAGCAGATTTCTCTGAACTCCCCAATTCTGGTGGTGTTAAGGCCTTGGAACTCCTTGTTGGTTCAGGTGAAGTTCCTCAAGATGGAGACCAGGTTGAGATTCATTACTATGGTAGACTTGCAGCAAAACAAGGATGGCGTTTTGATTCAACCTATGACCACAAAGATGAGAATGGTGATCCTAATCCTTTTGTCTTTGTCCTTGGTTCTGGTAAGGTAATTGCTGGAATTGATGTGGCAGTGAGATCAATGAAAGTCGGTGGTATTCGCAGAGTCATCATACCTCCCTCACTTGGGTATCAGAACACATCACAGGAACCTATCCCGCCTAATTTCTTTGACAGGCAGAGGCTGTTCACTACCATTTTTAATCCGACTCGACTTGCAAATGGTGAAGGTTCGACTTTAGGGACACTTATATTTGATATTGAACTGGTTGGTCTGAGGCATCAATGA

Protein sequence

>Msa0163960

MKMKIIKYCVLGSATRVCATLPHTKYPCNITRRPLSLSLISTTFSALIFSLPLPPSYSSPSPSSKRPIADFSELPNSGGVKALELLVGSGEVPQDGDQVEIHYYGRLAAKQGWRFDSTYDHKDENGDPNPFVFVLGSGKVIAGIDVAVRSMKVGGIRRVIIPPSLGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVGLRHQ*