Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344630 | AES68255.2 | 85.135 | 74 | 10 | 1 | 3 | 76 | 176 | 248 | 1.78e-35 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344630 | sp|A0A0B6VQ48|PAR1_ROSHC | 69.697 | 66 | 20 | 0 | 11 | 76 | 210 | 275 | 3.99e-28 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344630 | G7IYC3 | 85.135 | 74 | 10 | 1 | 3 | 76 | 176 | 248 | 8.51e-36 | 131 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0344630 | 0.814871 | 1.235690e-51 | -8.615850e-47 |
| Msa0043980 | Msa0344630 | 0.807677 | 4.498361e-50 | -8.615850e-47 |
| Msa0049750 | Msa0344630 | 0.820797 | 5.672983e-53 | -8.615850e-47 |
| Msa0051630 | Msa0344630 | 0.809170 | 2.160290e-50 | -8.615850e-47 |
| Msa0051740 | Msa0344630 | 0.803494 | 3.394255e-49 | -8.615850e-47 |
| Msa0051750 | Msa0344630 | 0.813985 | 1.940140e-51 | -8.615850e-47 |
| Msa0065950 | Msa0344630 | 0.809580 | 1.763695e-50 | -8.615850e-47 |
| Msa0206010 | Msa0344630 | 0.825024 | 5.873508e-54 | -8.615850e-47 |
| Msa0284820 | Msa0344630 | 0.813260 | 2.800226e-51 | -8.615850e-47 |
| Msa0287410 | Msa0344630 | 0.828177 | 1.039196e-54 | -8.615850e-47 |
| Msa0323560 | Msa0344630 | 0.807878 | 4.075920e-50 | -8.615850e-47 |
| Msa0326110 | Msa0344630 | 0.826460 | 2.680015e-54 | -8.615850e-47 |
| Msa0344630 | Msa0588240 | 0.814798 | 1.282435e-51 | -8.615850e-47 |
| Msa0344630 | Msa0628740 | 0.804890 | 1.738196e-49 | -8.615850e-47 |
| Msa0344630 | Msa0653490 | 0.800169 | 1.635084e-48 | -8.615850e-47 |
| Msa0344630 | Msa0666140 | 0.803303 | 3.718547e-49 | -8.615850e-47 |
| Msa0344630 | Msa0698360 | 0.801059 | 1.076481e-48 | -8.615850e-47 |
| Msa0344630 | Msa1082500 | 0.805018 | 1.634744e-49 | -8.615850e-47 |
| Msa0344630 | Msa1250530 | 0.806767 | 7.011709e-50 | -8.615850e-47 |
| Msa0344630 | Msa1279210 | 0.805132 | 1.546851e-49 | -8.615850e-47 |
| Msa0344630 | Msa1397120 | 0.807485 | 4.940758e-50 | -8.615850e-47 |
| Msa0344630 | Msa1403890 | 0.802988 | 4.320272e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344630 | MtrunA17_Chr3g0077221 | 85.135 | 74 | 10 | 1 | 3 | 76 | 207 | 279 | 5.26e-39 | 130 |
| Msa0344630 | MtrunA17_Chr3g0077231 | 90.476 | 63 | 6 | 0 | 14 | 76 | 213 | 275 | 3.73e-36 | 123 |
| Msa0344630 | MtrunA17_Chr4g0039311 | 60.811 | 74 | 28 | 1 | 3 | 76 | 208 | 280 | 5.81e-29 | 105 |
| Msa0344630 | MtrunA17_Chr4g0039321 | 63.514 | 74 | 26 | 1 | 3 | 76 | 206 | 278 | 6.54e-28 | 102 |
| Msa0344630 | MtrunA17_Chr8g0363831 | 72.881 | 59 | 16 | 0 | 18 | 76 | 219 | 277 | 2.54e-26 | 97.8 |
| Msa0344630 | MtrunA17_Chr4g0039331 | 61.905 | 63 | 24 | 0 | 11 | 73 | 72 | 134 | 4.53e-25 | 90.9 |
| Msa0344630 | MtrunA17_Chr8g0364051 | 69.492 | 59 | 18 | 0 | 18 | 76 | 218 | 276 | 1.77e-22 | 87.8 |
| Msa0344630 | MtrunA17_Chr4g0001321 | 41.892 | 74 | 43 | 0 | 3 | 76 | 207 | 280 | 9.87e-14 | 63.9 |
| Msa0344630 | MtrunA17_Chr5g0431311 | 40.580 | 69 | 41 | 0 | 7 | 75 | 205 | 273 | 4.31e-13 | 62.0 |
| Msa0344630 | MtrunA17_Chr2g0333781 | 39.189 | 74 | 45 | 0 | 3 | 76 | 210 | 283 | 1.19e-12 | 60.8 |
| Msa0344630 | MtrunA17_Chr3g0106111 | 46.296 | 54 | 29 | 0 | 16 | 69 | 214 | 267 | 1.33e-11 | 58.2 |
| Msa0344630 | MtrunA17_Chr5g0423551 | 45.283 | 53 | 29 | 0 | 18 | 70 | 215 | 267 | 3.30e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344630 | AT1G51410.1 | 77.778 | 63 | 14 | 0 | 14 | 76 | 216 | 278 | 6.43e-31 | 110 |
| Msa0344630 | AT5G19440.1 | 66.216 | 74 | 24 | 1 | 3 | 76 | 207 | 279 | 2.73e-28 | 103 |
| Msa0344630 | AT1G15950.6 | 44.595 | 74 | 41 | 0 | 3 | 76 | 203 | 276 | 1.80e-15 | 68.6 |
| Msa0344630 | AT1G15950.3 | 44.595 | 74 | 41 | 0 | 3 | 76 | 203 | 276 | 2.14e-15 | 68.9 |
| Msa0344630 | AT1G15950.1 | 44.595 | 74 | 41 | 0 | 3 | 76 | 203 | 276 | 2.14e-15 | 68.9 |
| Msa0344630 | AT1G15950.2 | 44.595 | 74 | 41 | 0 | 3 | 76 | 203 | 276 | 2.62e-15 | 68.6 |
| Msa0344630 | AT1G15950.7 | 44.595 | 74 | 41 | 0 | 3 | 76 | 105 | 178 | 6.07e-15 | 67.0 |
| Msa0344630 | AT1G15950.4 | 44.444 | 72 | 40 | 0 | 3 | 74 | 203 | 274 | 7.59e-15 | 67.0 |
| Msa0344630 | AT1G15950.5 | 44.444 | 72 | 40 | 0 | 3 | 74 | 203 | 274 | 9.03e-15 | 67.0 |
| Msa0344630 | AT1G80820.2 | 41.429 | 70 | 41 | 0 | 7 | 76 | 202 | 271 | 4.79e-13 | 62.0 |
| Msa0344630 | AT1G80820.1 | 41.429 | 70 | 41 | 0 | 7 | 76 | 202 | 271 | 6.75e-13 | 62.0 |
| Msa0344630 | AT5G58490.1 | 39.726 | 73 | 44 | 0 | 3 | 75 | 205 | 277 | 1.73e-12 | 60.8 |
Find 16 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCATCCCAAACTAGAATT+TGG | 0.171474 | 3_1:+3407825 | None:intergenic |
| GACATTTCCAAATTCTAGTT+TGG | 0.253982 | 3_1:-3407832 | Msa0344630:CDS |
| CATTCTCGTACGCCAGAATA+TGG | 0.258064 | 3_1:+3407778 | None:intergenic |
| AATTATTAATCTTACTTCTC+TGG | 0.283324 | 3_1:+3407660 | None:intergenic |
| TGTTGCAAATGCCCATATTC+TGG | 0.323215 | 3_1:-3407790 | Msa0344630:CDS |
| CTCTTTCACTTCATTGATGC+AGG | 0.365922 | 3_1:-3407861 | Msa0344630:CDS |
| ACATTTCCAAATTCTAGTTT+GGG | 0.393375 | 3_1:-3407831 | Msa0344630:CDS |
| ATTATTAATCTTACTTCTCT+GGG | 0.410205 | 3_1:+3407661 | None:intergenic |
| TCCAAATTCTAGTTTGGGAT+GGG | 0.474083 | 3_1:-3407826 | Msa0344630:CDS |
| TTCCAAATTCTAGTTTGGGA+TGG | 0.486809 | 3_1:-3407827 | Msa0344630:CDS |
| ATTCTCGTACGCCAGAATAT+GGG | 0.502026 | 3_1:+3407779 | None:intergenic |
| TACGAGAATGCTTCAGCTAG+TGG | 0.527796 | 3_1:-3407765 | Msa0344630:CDS |
| TTCTCTGGGAGTTGCAACGA+AGG | 0.598543 | 3_1:+3407675 | None:intergenic |
| TATTGCGAAGAGAAATGCCA+AGG | 0.623859 | 3_1:-3412912 | None:intergenic |
| CACACTACTCAGAAGTTGTG+AGG | 0.628161 | 3_1:-3407716 | Msa0344630:CDS |
| TCTCTGGGAGTTGCAACGAA+GGG | 0.653512 | 3_1:+3407676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTCATATTTACTTAAAT+AGG | - | chr3_1:3408369-3408388 | Msa0344630:intron | 10.0% |
| !! | TTTAATAAAAAATCAAACTT+AGG | + | chr3_1:3409074-3409093 | None:intergenic | 10.0% |
| !! | TTATTAATTTCAAAAAAGAT+GGG | - | chr3_1:3410363-3410382 | Msa0344630:intron | 10.0% |
| !! | AAAAAGAAAAAAAAAAAAAG+AGG | - | chr3_1:3410487-3410506 | Msa0344630:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr3_1:3410912-3410931 | Msa0344630:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr3_1:3410913-3410932 | Msa0344630:intron | 10.0% |
| !! | TATTTAGTGTTATATTATAT+TGG | - | chr3_1:3410977-3410996 | Msa0344630:intron | 10.0% |
| !! | ATTTAGTGTTATATTATATT+GGG | - | chr3_1:3410978-3410997 | Msa0344630:intron | 10.0% |
| !!! | TATATTCGACAAATTTTTAT+TGG | - | chr3_1:3407718-3407737 | Msa0344630:CDS | 15.0% |
| !!! | ATATTCGACAAATTTTTATT+GGG | - | chr3_1:3407719-3407738 | Msa0344630:CDS | 15.0% |
| !!! | AGTAAAATAGGTTTTTATAA+AGG | + | chr3_1:3408684-3408703 | None:intergenic | 15.0% |
| !! | TTATTTAGTAACAAGTATAT+TGG | + | chr3_1:3408811-3408830 | None:intergenic | 15.0% |
| !!! | ACTTGATTATACTTTTTAAT+TGG | - | chr3_1:3409231-3409250 | Msa0344630:intron | 15.0% |
| !!! | CTTGATTATACTTTTTAATT+GGG | - | chr3_1:3409232-3409251 | Msa0344630:intron | 15.0% |
| !!! | TTGATTATACTTTTTAATTG+GGG | - | chr3_1:3409233-3409252 | Msa0344630:intron | 15.0% |
| !!! | GTTTTTTTTTTAAAGAACTT+GGG | + | chr3_1:3409315-3409334 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTTTTAAAGAACT+TGG | + | chr3_1:3409316-3409335 | None:intergenic | 15.0% |
| !!! | ATTTTAGACAATTTATACTT+GGG | + | chr3_1:3409345-3409364 | None:intergenic | 15.0% |
| !!! | TATTTTAGACAATTTATACT+TGG | + | chr3_1:3409346-3409365 | None:intergenic | 15.0% |
| !! | AAACTATTAATTATACAAAG+AGG | - | chr3_1:3409600-3409619 | Msa0344630:intron | 15.0% |
| !! | AACTATTAATTATACAAAGA+GGG | - | chr3_1:3409601-3409620 | Msa0344630:intron | 15.0% |
| !! | AAAAAAGAACAAATAATACT+TGG | + | chr3_1:3409818-3409837 | None:intergenic | 15.0% |
| !!! | GTTCTTTTTTTTTTTTTTTC+CGG | - | chr3_1:3409828-3409847 | Msa0344630:intron | 15.0% |
| !!! | GTTAATTGTTTCTTATAATA+AGG | + | chr3_1:3410102-3410121 | None:intergenic | 15.0% |
| !!! | TAAGAAACAATTAACTTTTT+TGG | - | chr3_1:3410107-3410126 | Msa0344630:intron | 15.0% |
| !! | ATAAATAAATGAAATGAAGA+TGG | - | chr3_1:3410052-3410071 | Msa0344630:intron | 15.0% |
| !!! | CTTTTTTGAAATTAATAACA+AGG | + | chr3_1:3410361-3410380 | None:intergenic | 15.0% |
| !! | GTTATTAATTTCAAAAAAGA+TGG | - | chr3_1:3410362-3410381 | Msa0344630:intron | 15.0% |
| !! | ATAGTATAGTATAATGTTTA+CGG | - | chr3_1:3410433-3410452 | Msa0344630:intron | 15.0% |
| !! | TAAAATGAGAAAAACATATT+TGG | + | chr3_1:3410554-3410573 | None:intergenic | 15.0% |
| !! | TGTATATTAGTAGAAAAATA+CGG | + | chr3_1:3410644-3410663 | None:intergenic | 15.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr3_1:3410877-3410896 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr3_1:3410914-3410933 | Msa0344630:intron | 15.0% |
| !! | ATAAAAACATAAATTGACCT+TGG | + | chr3_1:3407677-3407696 | None:intergenic | 20.0% |
| !!! | TTTATTTTTGATTTTGTGAG+CGG | - | chr3_1:3407692-3407711 | Msa0344630:CDS | 20.0% |
| !!! | ATGTCTTTTTATACATTGTA+AGG | - | chr3_1:3407743-3407762 | Msa0344630:CDS | 20.0% |
| !!! | TGTCTTTTTATACATTGTAA+GGG | - | chr3_1:3407744-3407763 | Msa0344630:CDS | 20.0% |
| !!! | TGTTAAATAGACTTTTTAAC+TGG | + | chr3_1:3408042-3408061 | None:intergenic | 20.0% |
| !! | TTTAAGAAAAAAGTCAGATA+TGG | - | chr3_1:3408484-3408503 | Msa0344630:intron | 20.0% |
| !! | AAATCTTATAAATGTCTAAG+AGG | - | chr3_1:3408746-3408765 | Msa0344630:intron | 20.0% |
| !! | TCTTCATAAGATAGTTAATT+AGG | + | chr3_1:3408778-3408797 | None:intergenic | 20.0% |
| !!! | AGACTAGTCTATTTTTTTTA+GGG | + | chr3_1:3408978-3408997 | None:intergenic | 20.0% |
| !! | ACTATTAATTATACAAAGAG+GGG | - | chr3_1:3409602-3409621 | Msa0344630:intron | 20.0% |
| !! | TTATAAATACTATTAGTGTC+CGG | + | chr3_1:3409850-3409869 | None:intergenic | 20.0% |
| !! | TTATTATATGAAATCTACGT+GGG | + | chr3_1:3409990-3410009 | None:intergenic | 20.0% |
| !! | TTTATTATATGAAATCTACG+TGG | + | chr3_1:3409991-3410010 | None:intergenic | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | + | chr3_1:3410196-3410215 | None:intergenic | 20.0% |
| !!! | AAATTAATAACAAGGTTTTC+GGG | + | chr3_1:3410353-3410372 | None:intergenic | 20.0% |
| !!! | GAAATTAATAACAAGGTTTT+CGG | + | chr3_1:3410354-3410373 | None:intergenic | 20.0% |
| !! | TAGTATAGTATAATGTTTAC+GGG | - | chr3_1:3410434-3410453 | Msa0344630:intron | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr3_1:3410878-3410897 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr3_1:3410937-3410956 | Msa0344630:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr3_1:3411047-3411066 | Msa0344630:intron | 20.0% |
| !! | AATTCAATATAATTTCAGTC+CGG | + | chr3_1:3411496-3411515 | None:intergenic | 20.0% |
| !!! | TCATGGATTGAAATTATTAT+TGG | - | chr3_1:3411533-3411552 | Msa0344630:intron | 20.0% |
| !! | GTAATTAATTACCATTAATC+AGG | + | chr3_1:3412260-3412279 | None:intergenic | 20.0% |
| !!! | TTGGTTTGTCGAAAATTTTA+AGG | - | chr3_1:3407976-3407995 | Msa0344630:intron | 25.0% |
| ! | TCATATTTACTTAAATAGGC+CGG | - | chr3_1:3408373-3408392 | Msa0344630:intron | 25.0% |
| !!! | ATGTCATATGCTCATTTTTA+AGG | - | chr3_1:3408618-3408637 | Msa0344630:intron | 25.0% |
| !!! | ACAAGTATATTGGTTTGATT+AGG | + | chr3_1:3408801-3408820 | None:intergenic | 25.0% |
| ! | ATTCATACTTTCACATGATT+TGG | + | chr3_1:3408834-3408853 | None:intergenic | 25.0% |
| ! | AACATGTACCTATTTCATTA+TGG | + | chr3_1:3408888-3408907 | None:intergenic | 25.0% |
| !!! | CAGACTAGTCTATTTTTTTT+AGG | + | chr3_1:3408979-3408998 | None:intergenic | 25.0% |
| !! | CGGTCTATTTAAAATCTAAT+CGG | + | chr3_1:3409106-3409125 | None:intergenic | 25.0% |
| !! | ATTAGATTTTAAATAGACCG+AGG | - | chr3_1:3409106-3409125 | Msa0344630:intron | 25.0% |
| !!! | TAAGGAGTTTTAATTTTCGA+AGG | - | chr3_1:3409203-3409222 | Msa0344630:intron | 25.0% |
| !!! | ATTATACTTTTTAATTGGGG+TGG | - | chr3_1:3409236-3409255 | Msa0344630:intron | 25.0% |
| !!! | TTATACTTTTTAATTGGGGT+GGG | - | chr3_1:3409237-3409256 | Msa0344630:intron | 25.0% |
| !! | CTTACCTTTTGCAAATTAAA+TGG | - | chr3_1:3409469-3409488 | Msa0344630:intron | 25.0% |
| !! | TTCTAGAGAACTATAGATAA+AGG | + | chr3_1:3410032-3410051 | None:intergenic | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | + | chr3_1:3410097-3410116 | None:intergenic | 25.0% |
| !! | AATTAATAACAAGGTTTTCG+GGG | + | chr3_1:3410352-3410371 | None:intergenic | 25.0% |
| ! | TATAATGTTTACGGGAAAAA+AGG | - | chr3_1:3410442-3410461 | Msa0344630:intron | 25.0% |
| ! | TAATAAGGTCAAGTGTATTA+TGG | - | chr3_1:3410794-3410813 | Msa0344630:intron | 25.0% |
| ! | AATAAGGTCAAGTGTATTAT+GGG | - | chr3_1:3410795-3410814 | Msa0344630:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr3_1:3410936-3410955 | Msa0344630:intron | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr3_1:3411024-3411043 | Msa0344630:intron | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr3_1:3411025-3411044 | Msa0344630:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr3_1:3411046-3411065 | Msa0344630:intron | 25.0% |
| ! | GAAAGAAAAAGACAAATACT+TGG | + | chr3_1:3411345-3411364 | None:intergenic | 25.0% |
| ! | ATTCAATATAATTTCAGTCC+GGG | + | chr3_1:3411495-3411514 | None:intergenic | 25.0% |
| ! | TGGATTGAAATTATTATTGG+TGG | - | chr3_1:3411536-3411555 | Msa0344630:intron | 25.0% |
| ! | ATTGAAATTATTATTGGTGG+TGG | - | chr3_1:3411539-3411558 | Msa0344630:intron | 25.0% |
| ! | TAAAGAAAACAACATCGATA+TGG | - | chr3_1:3412158-3412177 | Msa0344630:intron | 25.0% |
| ! | AATTGAAAGCTACTAAAAGT+AGG | - | chr3_1:3412391-3412410 | Msa0344630:intron | 25.0% |
| ! | ATTGAAAGCTACTAAAAGTA+GGG | - | chr3_1:3412392-3412411 | Msa0344630:intron | 25.0% |
| !! | TGTCTATTTCCTTTAATTTC+TGG | - | chr3_1:3412482-3412501 | Msa0344630:intron | 25.0% |
| !!! | ACATTTCCAAATTCTAGTTT+GGG | - | chr3_1:3412738-3412757 | Msa0344630:intron | 25.0% |
| AAGGAATTGACAACAACAAA+TGG | - | chr3_1:3407818-3407837 | Msa0344630:CDS | 30.0% | |
| AACAACAAATGGAGTCAATT+TGG | - | chr3_1:3407829-3407848 | Msa0344630:CDS | 30.0% | |
| TACATAAACACGAGAAAATG+AGG | + | chr3_1:3407873-3407892 | None:intergenic | 30.0% | |
| TGTTTATGTATGTAGTTGGT+AGG | - | chr3_1:3407883-3407902 | Msa0344630:intron | 30.0% | |
| TTACGATTAGAAGTGAGAAT+CGG | - | chr3_1:3407928-3407947 | Msa0344630:intron | 30.0% | |
| ACTGGATAATCAGTCATATA+AGG | + | chr3_1:3408024-3408043 | None:intergenic | 30.0% | |
| ! | TTTTATTAAGATCTGTGACC+TGG | - | chr3_1:3408416-3408435 | Msa0344630:intron | 30.0% |
| TCTATTTAGCTAAAAAGACC+AGG | + | chr3_1:3408437-3408456 | None:intergenic | 30.0% | |
| ATGAGCATATGACATGTAAT+AGG | + | chr3_1:3408613-3408632 | None:intergenic | 30.0% | |
| ! | AAAGGTTTTCATGTTTCACT+AGG | + | chr3_1:3408666-3408685 | None:intergenic | 30.0% |
| TACAGTAGCCATAATGAAAT+AGG | - | chr3_1:3408877-3408896 | Msa0344630:intron | 30.0% | |
| AACTAACAACATATATGCGT+GGG | + | chr3_1:3409163-3409182 | None:intergenic | 30.0% | |
| !! | AGGTCCATTTAATTTGCAAA+AGG | + | chr3_1:3409476-3409495 | None:intergenic | 30.0% |
| TCTAGAGAACTACTATAGTT+AGG | + | chr3_1:3410275-3410294 | None:intergenic | 30.0% | |
| AGACATGTAAAGAACTAGTT+AGG | + | chr3_1:3410323-3410342 | None:intergenic | 30.0% | |
| ! | AAAAAAAAAGAGGAGTGTAG+TGG | - | chr3_1:3410497-3410516 | Msa0344630:intron | 30.0% |
| TTCAAATGAGTCATCTATTG+CGG | + | chr3_1:3410591-3410610 | None:intergenic | 30.0% | |
| AAATACGGTCAAAGTAAGTT+AGG | + | chr3_1:3410629-3410648 | None:intergenic | 30.0% | |
| ATGTATTGTCATGCGTAATA+AGG | - | chr3_1:3410779-3410798 | Msa0344630:intron | 30.0% | |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr3_1:3410873-3410892 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr3_1:3410921-3410940 | Msa0344630:intron | 30.0% | |
| ! | AATATGTATGTGTCCTGTTT+TGG | - | chr3_1:3411563-3411582 | Msa0344630:intron | 30.0% |
| !! | AATTCAAAACCGTTTTTGAG+AGG | + | chr3_1:3412036-3412055 | None:intergenic | 30.0% |
| GCAATTCTAAACCTGATTAA+TGG | - | chr3_1:3412246-3412265 | Msa0344630:intron | 30.0% | |
| AACAACAAGCCAGAAATTAA+AGG | + | chr3_1:3412494-3412513 | None:intergenic | 30.0% | |
| ACAATGAAGCTAGAAATAAC+AGG | + | chr3_1:3412574-3412593 | None:intergenic | 30.0% | |
| CAAATATGTTTGTGTTCAAG+AGG | - | chr3_1:3412653-3412672 | Msa0344630:intron | 30.0% | |
| AGCTTCTATTATCTACAGAA+GGG | + | chr3_1:3412690-3412709 | None:intergenic | 30.0% | |
| ! | GACATTTCCAAATTCTAGTT+TGG | - | chr3_1:3412737-3412756 | Msa0344630:intron | 30.0% |
| GCAGTTGTGCATTAAAGAAA+GGG | - | chr3_1:3407777-3407796 | Msa0344630:CDS | 35.0% | |
| CAGTTGTGCATTAAAGAAAG+GGG | - | chr3_1:3407778-3407797 | Msa0344630:CDS | 35.0% | |
| CTCGTGTTTATGTATGTAGT+TGG | - | chr3_1:3407879-3407898 | Msa0344630:intron | 35.0% | |
| !! | ATGTAGTTGGTAGGATGAAA+TGG | - | chr3_1:3407892-3407911 | Msa0344630:intron | 35.0% |
| !! | TGTAGTTGGTAGGATGAAAT+GGG | - | chr3_1:3407893-3407912 | Msa0344630:intron | 35.0% |
| ATTAGAAGTGAGAATCGGTT+AGG | - | chr3_1:3407933-3407952 | Msa0344630:intron | 35.0% | |
| ! | ATCTTTTAGACCTATCATGC+CGG | + | chr3_1:3408395-3408414 | None:intergenic | 35.0% |
| CATATGACATGTAATAGGTC+AGG | + | chr3_1:3408608-3408627 | None:intergenic | 35.0% | |
| ! | GTTTGACCTGACCTTTTTAA+AGG | - | chr3_1:3408640-3408659 | Msa0344630:intron | 35.0% |
| ! | GTTTCACTAGGCCTTTAAAA+AGG | + | chr3_1:3408654-3408673 | None:intergenic | 35.0% |
| GTTAGGTCGTAGAGTAAAAT+AGG | + | chr3_1:3408696-3408715 | None:intergenic | 35.0% | |
| ! | TTTTAAATAGACCGAGGTGT+AGG | - | chr3_1:3409112-3409131 | Msa0344630:intron | 35.0% |
| CAACTAACAACATATATGCG+TGG | + | chr3_1:3409164-3409183 | None:intergenic | 35.0% | |
| !! | GTAGCAAGGATTCTAGTTTA+AGG | - | chr3_1:3409185-3409204 | Msa0344630:intron | 35.0% |
| CTAACACTCACTCTTCTATT+AGG | - | chr3_1:3409907-3409926 | Msa0344630:intron | 35.0% | |
| TCCTAACTATATACTCCATC+CGG | - | chr3_1:3410075-3410094 | Msa0344630:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+TGG | + | chr3_1:3410093-3410112 | None:intergenic | 35.0% | |
| ! | TTCTAGAGAACTACTCTCTT+CGG | + | chr3_1:3410228-3410247 | None:intergenic | 35.0% |
| AAAGATGGGACAGATATTAC+TGG | - | chr3_1:3410377-3410396 | Msa0344630:intron | 35.0% | |
| TCAAATGAGTCATCTATTGC+GGG | + | chr3_1:3410590-3410609 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr3_1:3411060-3411079 | Msa0344630:intron | 35.0% | |
| AAGGCAAATCTACTTGAAGA+GGG | - | chr3_1:3411725-3411744 | Msa0344630:intron | 35.0% | |
| ACCTTGAACAACAGAATCAA+AGG | + | chr3_1:3411753-3411772 | None:intergenic | 35.0% | |
| TCCTTGACATCATGATAGAA+GGG | + | chr3_1:3411803-3411822 | None:intergenic | 35.0% | |
| GTATGTGGTTTCAAAGACAT+TGG | - | chr3_1:3412110-3412129 | Msa0344630:intron | 35.0% | |
| CATATTGCTAGATGCAGAAA+AGG | + | chr3_1:3412356-3412375 | None:intergenic | 35.0% | |
| ! | CTTTTCTGCATCTAGCAATA+TGG | - | chr3_1:3412354-3412373 | Msa0344630:intron | 35.0% |
| AACAACAACTATTGCTGATC+TGG | - | chr3_1:3412449-3412468 | Msa0344630:intron | 35.0% | |
| ACAGGAAATATACTCTCATC+TGG | + | chr3_1:3412556-3412575 | None:intergenic | 35.0% | |
| GAGCTTCTATTATCTACAGA+AGG | + | chr3_1:3412691-3412710 | None:intergenic | 35.0% | |
| !! | TTCCAAATTCTAGTTTGGGA+TGG | - | chr3_1:3412742-3412761 | Msa0344630:intron | 35.0% |
| !! | TCCAAATTCTAGTTTGGGAT+GGG | - | chr3_1:3412743-3412762 | Msa0344630:intron | 35.0% |
| ACATTGTAAGGGACTAACTG+AGG | - | chr3_1:3407755-3407774 | Msa0344630:CDS | 40.0% | |
| GGCAGTTGTGCATTAAAGAA+AGG | - | chr3_1:3407776-3407795 | Msa0344630:CDS | 40.0% | |
| GGCAATGTGACTGTTATTGA+AGG | - | chr3_1:3407799-3407818 | Msa0344630:CDS | 40.0% | |
| GGAGTCAATTTGGATGATGT+TGG | - | chr3_1:3407839-3407858 | Msa0344630:CDS | 40.0% | |
| ! | TTGGTAGGATGAAATGGGTT+AGG | - | chr3_1:3407898-3407917 | Msa0344630:intron | 40.0% |
| ! | CGAGTTGCACGATTTAAAGT+TGG | - | chr3_1:3407957-3407976 | Msa0344630:intron | 40.0% |
| TATTCTCATCCCTGTTTGCA+AGG | - | chr3_1:3408551-3408570 | Msa0344630:intron | 40.0% | |
| ACATGTAATAGGTCAGGCTA+AGG | + | chr3_1:3408602-3408621 | None:intergenic | 40.0% | |
| ! | ACTAGGCCTTTAAAAAGGTC+AGG | + | chr3_1:3408649-3408668 | None:intergenic | 40.0% |
| TACGACCTAACAACGTCAAT+AGG | - | chr3_1:3408705-3408724 | Msa0344630:intron | 40.0% | |
| GTAGACCTATTGACGTTGTT+AGG | + | chr3_1:3408713-3408732 | None:intergenic | 40.0% | |
| ATGTTGTTAGTTGCGTAGCA+AGG | - | chr3_1:3409171-3409190 | Msa0344630:intron | 40.0% | |
| !! | TACTTTTTAATTGGGGTGGG+AGG | - | chr3_1:3409240-3409259 | Msa0344630:intron | 40.0% |
| ! | TGGGATAACAAGTTGACATG+TGG | + | chr3_1:3409296-3409315 | None:intergenic | 40.0% |
| TCATGGGCATATTTCTCTTG+AGG | + | chr3_1:3409496-3409515 | None:intergenic | 40.0% | |
| ACCGGATGGAGTATATAGTT+AGG | + | chr3_1:3410079-3410098 | None:intergenic | 40.0% | |
| ATGGGACAGATATTACTGGT+GGG | - | chr3_1:3410381-3410400 | Msa0344630:intron | 40.0% | |
| GTTTACGGGAAAAAAGGAGT+TGG | - | chr3_1:3410448-3410467 | Msa0344630:intron | 40.0% | |
| AGGTCAAGTGTATTATGGGA+TGG | - | chr3_1:3410799-3410818 | Msa0344630:intron | 40.0% | |
| TCAAGTGTATTATGGGATGG+AGG | - | chr3_1:3410802-3410821 | Msa0344630:intron | 40.0% | |
| GTCAATTAAATTGGGACGGA+GGG | + | chr3_1:3410869-3410888 | None:intergenic | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | + | chr3_1:3410870-3410889 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr3_1:3411061-3411080 | Msa0344630:intron | 40.0% | |
| AGAGAAAATGAGCAGCAACT+TGG | - | chr3_1:3411218-3411237 | Msa0344630:intron | 40.0% | |
| GAGAAAATGAGCAGCAACTT+GGG | - | chr3_1:3411219-3411238 | Msa0344630:intron | 40.0% | |
| GGAAATGTTGTATGTGTGAC+TGG | - | chr3_1:3411240-3411259 | Msa0344630:intron | 40.0% | |
| AGCCACGATTAAGAAGCAAT+CGG | + | chr3_1:3411296-3411315 | None:intergenic | 40.0% | |
| ACAAATACTTGGATCGCGAA+CGG | + | chr3_1:3411334-3411353 | None:intergenic | 40.0% | |
| !!! | TATGTGTCCTGTTTTGGTGT+TGG | - | chr3_1:3411569-3411588 | Msa0344630:intron | 40.0% |
| ACAAACACCAACACCAAAAC+AGG | + | chr3_1:3411579-3411598 | None:intergenic | 40.0% | |
| CAAGGCAAATCTACTTGAAG+AGG | - | chr3_1:3411724-3411743 | Msa0344630:intron | 40.0% | |
| GCCTTTGATTCTGTTGTTCA+AGG | - | chr3_1:3411749-3411768 | Msa0344630:intron | 40.0% | |
| TCTGTTGTTCAAGGTTGTCA+TGG | - | chr3_1:3411758-3411777 | Msa0344630:intron | 40.0% | |
| TCCCTTCTATCATGATGTCA+AGG | - | chr3_1:3411799-3411818 | Msa0344630:intron | 40.0% | |
| GTCCTTGACATCATGATAGA+AGG | + | chr3_1:3411804-3411823 | None:intergenic | 40.0% | |
| GATCAATCAATTCAGCCTGA+GGG | + | chr3_1:3411826-3411845 | None:intergenic | 40.0% | |
| TTGATTGATCCTGCTCTCAA+AGG | - | chr3_1:3411836-3411855 | Msa0344630:intron | 40.0% | |
| TGATTGATCCTGCTCTCAAA+GGG | - | chr3_1:3411837-3411856 | Msa0344630:intron | 40.0% | |
| AGACAAGACGTTTGAGTGAT+GGG | + | chr3_1:3411895-3411914 | None:intergenic | 40.0% | |
| AAGACAAGACGTTTGAGTGA+TGG | + | chr3_1:3411896-3411915 | None:intergenic | 40.0% | |
| ATTGCTGCTGTTGCGTATAA+TGG | - | chr3_1:3411926-3411945 | Msa0344630:intron | 40.0% | |
| ATGTTGTTGTCGATGAGACT+TGG | - | chr3_1:3411966-3411985 | Msa0344630:intron | 40.0% | |
| ATGTGTGTGCCTCTCAAAAA+CGG | - | chr3_1:3412024-3412043 | Msa0344630:intron | 40.0% | |
| CCACAGCTGAAACAATCAAT+AGG | + | chr3_1:3412091-3412110 | None:intergenic | 40.0% | |
| ! | CCTATTGATTGTTTCAGCTG+TGG | - | chr3_1:3412088-3412107 | Msa0344630:intron | 40.0% |
| ATTGTTTCAGCTGTGGTATG+TGG | - | chr3_1:3412095-3412114 | Msa0344630:intron | 40.0% | |
| GGTTACTATTAACCCAGCAA+TGG | - | chr3_1:3412179-3412198 | Msa0344630:intron | 40.0% | |
| ATTAACCCAGCAATGGTCAT+AGG | - | chr3_1:3412186-3412205 | Msa0344630:intron | 40.0% | |
| TTAACCCAGCAATGGTCATA+GGG | - | chr3_1:3412187-3412206 | Msa0344630:intron | 40.0% | |
| CTCTTTCACTTCATTGATGC+AGG | - | chr3_1:3412708-3412727 | Msa0344630:intron | 40.0% | |
| ACCCATCCCAAACTAGAATT+TGG | + | chr3_1:3412747-3412766 | None:intergenic | 40.0% | |
| TGTTGCAAATGCCCATATTC+TGG | - | chr3_1:3412779-3412798 | Msa0344630:intron | 40.0% | |
| ATTCTCGTACGCCAGAATAT+GGG | + | chr3_1:3412793-3412812 | None:intergenic | 40.0% | |
| CTTAAATAGGCCGGCATGAT+AGG | - | chr3_1:3408382-3408401 | Msa0344630:intron | 45.0% | |
| AGTCAGATATGGCCTATCGT+AGG | - | chr3_1:3408495-3408514 | Msa0344630:intron | 45.0% | |
| ATAGACCAGACATGCCAACA+GGG | + | chr3_1:3408534-3408553 | None:intergenic | 45.0% | |
| AATAGACCAGACATGCCAAC+AGG | + | chr3_1:3408535-3408554 | None:intergenic | 45.0% | |
| ! | ATGCATCGACCTTGCAAACA+GGG | + | chr3_1:3408563-3408582 | None:intergenic | 45.0% |
| TGTTTGCAAGGTCGATGCAT+GGG | - | chr3_1:3408563-3408582 | Msa0344630:intron | 45.0% | |
| GTCGCTCGAACAAATGTCAT+GGG | + | chr3_1:3409512-3409531 | None:intergenic | 45.0% | |
| TGTCGCTCGAACAAATGTCA+TGG | + | chr3_1:3409513-3409532 | None:intergenic | 45.0% | |
| GACATTTGTTCGAGCGACAA+CGG | - | chr3_1:3409514-3409533 | Msa0344630:intron | 45.0% | |
| ! | AGCGACAACGGCTCTATTTT+TGG | - | chr3_1:3409526-3409545 | Msa0344630:intron | 45.0% |
| !! | GCGACAACGGCTCTATTTTT+GGG | - | chr3_1:3409527-3409546 | Msa0344630:intron | 45.0% |
| CGAGGCAAGATCTCTCTATA+AGG | + | chr3_1:3409769-3409788 | None:intergenic | 45.0% | |
| GAGATCTTGCCTCGTTTCAA+CGG | - | chr3_1:3409775-3409794 | Msa0344630:intron | 45.0% | |
| GATGGGACAGATATTACTGG+TGG | - | chr3_1:3410380-3410399 | Msa0344630:intron | 45.0% | |
| TGGGACAGATATTACTGGTG+GGG | - | chr3_1:3410382-3410401 | Msa0344630:intron | 45.0% | |
| !! | GTGTAGTGGAGCGTTGTTAT+TGG | - | chr3_1:3410511-3410530 | Msa0344630:intron | 45.0% |
| ATGAGTCATCTATTGCGGGA+CGG | + | chr3_1:3410586-3410605 | None:intergenic | 45.0% | |
| ! | GTATTATCTAAGGCTGCGGT+TGG | + | chr3_1:3410845-3410864 | None:intergenic | 45.0% |
| !! | GGGAGTATTATCTAAGGCTG+CGG | + | chr3_1:3410849-3410868 | None:intergenic | 45.0% |
| !! | GACGGAGGGAGTATTATCTA+AGG | + | chr3_1:3410855-3410874 | None:intergenic | 45.0% |
| ! | CTTCAGGTTACATCGCTTCA+TGG | - | chr3_1:3411265-3411284 | Msa0344630:intron | 45.0% |
| GTCCGATTGCTTCTTAATCG+TGG | - | chr3_1:3411291-3411310 | Msa0344630:intron | 45.0% | |
| ATAATTTCAGTCCGGGTGTC+TGG | + | chr3_1:3411488-3411507 | None:intergenic | 45.0% | |
| TACCATACGAAGCACAGACA+CGG | + | chr3_1:3411604-3411623 | None:intergenic | 45.0% | |
| GACCACTTGGTTAAGCTTGA+AGG | - | chr3_1:3411677-3411696 | Msa0344630:intron | 45.0% | |
| CACCTTCAAGCTTAACCAAG+TGG | + | chr3_1:3411682-3411701 | None:intergenic | 45.0% | |
| !! | GGTTAAGCTTGAAGGTGCTA+AGG | - | chr3_1:3411685-3411704 | Msa0344630:intron | 45.0% |
| GGAGAGATTGCAACTGTTCA+AGG | - | chr3_1:3411706-3411725 | Msa0344630:intron | 45.0% | |
| GGATCAATCAATTCAGCCTG+AGG | + | chr3_1:3411827-3411846 | None:intergenic | 45.0% | |
| GACAAGACGTTTGAGTGATG+GGG | + | chr3_1:3411894-3411913 | None:intergenic | 45.0% | |
| ACAACAACATCAGGAGTTCG+AGG | + | chr3_1:3411956-3411975 | None:intergenic | 45.0% | |
| GTCTCATCGACAACAACATC+AGG | + | chr3_1:3411965-3411984 | None:intergenic | 45.0% | |
| !! | TTTAGGACTGGTTGCAAGAG+AGG | + | chr3_1:3412213-3412232 | None:intergenic | 45.0% |
| TTGCAGCAGCACTTGTGTTT+AGG | + | chr3_1:3412230-3412249 | None:intergenic | 45.0% | |
| CATTCTCGTACGCCAGAATA+TGG | + | chr3_1:3412794-3412813 | None:intergenic | 45.0% | |
| TACGAGAATGCTTCAGCTAG+TGG | - | chr3_1:3412804-3412823 | Msa0344630:intron | 45.0% | |
| CACACTACTCAGAAGTTGTG+AGG | - | chr3_1:3412853-3412872 | Msa0344630:intron | 45.0% | |
| !!! | GTTTTATAAATATAAAATAT+AGG | + | chr3_1:3408922-3408941 | None:intergenic | 5.0% |
| !! | ATAGTATTTAATAATTATTA+TGG | + | chr3_1:3410409-3410428 | None:intergenic | 5.0% |
| !!! | TTTTTTTTCTTTTTTTTTTT+GGG | + | chr3_1:3410481-3410500 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTCTTTTTTTTTT+TGG | + | chr3_1:3410482-3410501 | None:intergenic | 5.0% |
| !! | AAATAATAATTATTATTGAT+TGG | + | chr3_1:3411415-3411434 | None:intergenic | 5.0% |
| !! | ATATATATATATATATATCA+TGG | - | chr3_1:3411516-3411535 | Msa0344630:intron | 5.0% |
| TAGACCAGACATGCCAACAG+GGG | + | chr3_1:3408533-3408552 | None:intergenic | 50.0% | |
| ! | CATGCATCGACCTTGCAAAC+AGG | + | chr3_1:3408564-3408583 | None:intergenic | 50.0% |
| CTGTTTGCAAGGTCGATGCA+TGG | - | chr3_1:3408562-3408581 | Msa0344630:intron | 50.0% | |
| TAGGCCTCTGATGAGTGGTA+TGG | - | chr3_1:3409131-3409150 | Msa0344630:intron | 50.0% | |
| CATGCCATACCACTCATCAG+AGG | + | chr3_1:3409138-3409157 | None:intergenic | 50.0% | |
| ATCTTGCCTCGTTTCAACGG+AGG | - | chr3_1:3409778-3409797 | Msa0344630:intron | 50.0% | |
| TTGAGTCCTCCGTTGAAACG+AGG | + | chr3_1:3409787-3409806 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr3_1:3411065-3411084 | Msa0344630:intron | 50.0% | |
| AATACTTGGATCGCGAACGG+TGG | + | chr3_1:3411331-3411350 | None:intergenic | 50.0% | |
| TGAATGAGACACCAGACACC+CGG | - | chr3_1:3411474-3411493 | Msa0344630:intron | 50.0% | |
| TCATGATGTCAAGGACCCTC+AGG | - | chr3_1:3411808-3411827 | Msa0344630:intron | 50.0% | |
| ! | TTGAGAGTCCCTTTGAGAGC+AGG | + | chr3_1:3411848-3411867 | None:intergenic | 50.0% |
| ! | CATTGGCTGAAGAAGCTGCA+TGG | - | chr3_1:3412127-3412146 | Msa0344630:intron | 50.0% |
| ! | GCAGCACTTGTGTTTAGGAC+TGG | + | chr3_1:3412225-3412244 | None:intergenic | 50.0% |
| ! | TCTCTGGGAGTTGCAACGAA+GGG | + | chr3_1:3412896-3412915 | None:intergenic | 50.0% |
| ! | TTCTCTGGGAGTTGCAACGA+AGG | + | chr3_1:3412897-3412916 | None:intergenic | 50.0% |
| CCTACGGCTTAGCCTACGAT+AGG | + | chr3_1:3408510-3408529 | None:intergenic | 55.0% | |
| CCTATCGTAGGCTAAGCCGT+AGG | - | chr3_1:3408507-3408526 | Msa0344630:intron | 55.0% | |
| CTCATCAGAGGCCTACACCT+CGG | + | chr3_1:3409126-3409145 | None:intergenic | 55.0% | |
| AGGTGTAGGCCTCTGATGAG+TGG | - | chr3_1:3409126-3409145 | Msa0344630:intron | 55.0% | |
| GTCATCTATTGCGGGACGGA+GGG | + | chr3_1:3410582-3410601 | None:intergenic | 55.0% | |
| AGTCATCTATTGCGGGACGG+AGG | + | chr3_1:3410583-3410602 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr3_1:3411069-3411088 | Msa0344630:intron | 55.0% | |
| GTATGTGTGACTGGCGCTTC+AGG | - | chr3_1:3411249-3411268 | Msa0344630:intron | 55.0% | |
| GTCCGTGTCTGTGCTTCGTA+TGG | - | chr3_1:3411599-3411618 | Msa0344630:intron | 55.0% | |
| GAGGCCCTATGACCATTGCT+GGG | + | chr3_1:3412194-3412213 | None:intergenic | 55.0% | |
| AGAGGCCCTATGACCATTGC+TGG | + | chr3_1:3412195-3412214 | None:intergenic | 55.0% | |
| GACATGCCAACAGGGGCCTA+CGG | + | chr3_1:3408526-3408545 | None:intergenic | 60.0% | |
| TAGGCCCCTGTTGGCATGTC+TGG | - | chr3_1:3408526-3408545 | Msa0344630:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr3_1:3411068-3411087 | Msa0344630:intron | 60.0% | |
| GATCTCTACTCCCTCCGTCC+CGG | + | chr3_1:3411082-3411101 | None:intergenic | 60.0% | |
| GCTAAGCCGTAGGCCCCTGT+TGG | - | chr3_1:3408517-3408536 | Msa0344630:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 3407671 | 3412920 | 3407671 | ID=Msa0344630;Name=Msa0344630 |
| chr3_1 | mRNA | 3407671 | 3412920 | 3407671 | ID=Msa0344630-mRNA-1;Parent=Msa0344630;Name=Msa0344630-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.33|0|0|3|0|76 |
| chr3_1 | exon | 3412913 | 3412920 | 3412913 | ID=Msa0344630-mRNA-1:exon:1109;Parent=Msa0344630-mRNA-1 |
| chr3_1 | exon | 3407945 | 3407951 | 3407945 | ID=Msa0344630-mRNA-1:exon:1108;Parent=Msa0344630-mRNA-1 |
| chr3_1 | exon | 3407671 | 3407886 | 3407671 | ID=Msa0344630-mRNA-1:exon:1107;Parent=Msa0344630-mRNA-1 |
| chr3_1 | CDS | 3412913 | 3412920 | 3412913 | ID=Msa0344630-mRNA-1:cds;Parent=Msa0344630-mRNA-1 |
| chr3_1 | CDS | 3407945 | 3407951 | 3407945 | ID=Msa0344630-mRNA-1:cds;Parent=Msa0344630-mRNA-1 |
| chr3_1 | CDS | 3407671 | 3407886 | 3407671 | ID=Msa0344630-mRNA-1:cds;Parent=Msa0344630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
