AlfalfaGEDB | Msa0051740

M. sativa cultivar zhongmu-4 / Msa0051740

KEGG: K03030
GO: GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369
PFAM: PF01398.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051740	XP_003589235.1	100.000	313	0	0	1	313	1	313	0.0	650

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051740	sp\|Q9LT08\|PSDE_ARATH	95.806	310	11	2	4	313	1	308	0.0	611

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051740	A0A2K3PR28	100.000	313	0	0	1	313	1	313	0.0	650

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0051740	0.820657	6.108835e-53	-8.615850e-47
Msa0002560	Msa0051740	0.819673	1.026246e-52	-8.615850e-47
Msa0002680	Msa0051740	0.817451	3.276224e-52	-8.615850e-47
Msa0002710	Msa0051740	0.810715	1.004279e-50	-8.615850e-47
Msa0003220	Msa0051740	0.820148	7.992286e-53	-8.615850e-47
Msa0003720	Msa0051740	0.810881	9.243343e-51	-8.615850e-47
Msa0003890	Msa0051740	0.802348	5.855432e-49	-8.615850e-47
Msa0006110	Msa0051740	0.852775	3.700808e-61	-8.615850e-47
Msa0008200	Msa0051740	0.822419	2.392884e-53	-8.615850e-47
Msa0010490	Msa0051740	0.819924	8.996258e-53	-8.615850e-47

Showing 1 to 10 of 1,292 entries

Previous1 2 3 4 5…130Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051740	MtrunA17_Chr1g0153761	100.000	313	0	0	1	313	1	313	0.0	650
Msa0051740	MtrunA17_Chr2g0284651	99.032	310	2	1	4	313	1	309	0.0	636
Msa0051740	MtrunA17_Chr8g0334331	42.029	207	107	9	33	234	58	256	2.34e-35	131
Msa0051740	MtrunA17_Chr3g0138921	42.029	207	107	9	33	234	92	290	4.73e-35	130

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051740	AT5G23540.1	95.806	310	11	2	4	313	1	308	0.0	611
Msa0051740	AT5G23540.2	97.683	259	6	0	55	313	1	259	0.0	528
Msa0051740	AT1G71230.1	40.566	212	103	8	33	234	57	255	3.60e-34	128
Msa0051740	AT1G22920.1	39.806	206	113	8	33	234	57	255	1.65e-32	124
Msa0051740	AT1G22920.2	39.806	206	113	8	33	234	57	255	2.13e-32	123
Msa0051740	AT5G27607.1	76.596	47	11	0	100	146	70	116	2.60e-19	82.4

Showing 1 to 6 of 6 entries

Previous1Next

Find 93 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGCAATTGCCAATGT+CGG	0.594399	1_2:+5853602	Msa0051740:CDS
AAACTTGCTCAGATGAATCT+AGG	0.385066	1_2:-5850282	None:intergenic
AACAACAACCATGTCAGGTA+TGG	0.489135	1_2:+5850189	Msa0051740:exon
AACTAATGAACAAACTGTTC+AGG	0.404384	1_2:+5852979	Msa0051740:CDS
AACTTGCTCAGATGAATCTA+GGG	0.538949	1_2:-5850281	None:intergenic
AAGACACTCACTTGGATAGA+TGG	0.346214	1_2:-5852726	None:intergenic
AAGACTTCAAAGAATGTTTG+CGG	0.555255	1_2:+5850213	Msa0051740:CDS
AAGTCTTTCCATACCTGACA+TGG	0.565400	1_2:-5850197	None:intergenic
AAGTTATGGGTTTAATGTTG+GGG	0.546173	1_2:+5850476	Msa0051740:CDS
AAGTTGGAGGTTGTCTGTCG+CGG	0.603477	1_2:-5852687	None:intergenic

Showing 1 to 10 of 93 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGATCAAAACGCAAACTTTA+CGG	+	chr1_2:5850046-5850065	Msa0051740:five_prime_UTR	30.0%
AAGACTTCAAAGAATGTTTG+CGG	+	chr1_2:5850213-5850232	Msa0051740:CDS	30.0%
GGTATGAGAAATTGAATGAA+GGG	-	chr1_2:5850383-5850402	None:intergenic	30.0%
ATTAAACCCATAACTTCCAT+AGG	-	chr1_2:5850472-5850491	None:intergenic	30.0%
GAAGTTATGGGTTTAATGTT+GGG	+	chr1_2:5850475-5850494	Msa0051740:CDS	30.0%
AAGTTATGGGTTTAATGTTG+GGG	+	chr1_2:5850476-5850495	Msa0051740:CDS	30.0%
CTTGATATGTTGAAACAAAC+TGG	+	chr1_2:5850607-5850626	Msa0051740:CDS	30.0%
ATATGTTGAAACAAACTGGA+AGG	+	chr1_2:5850611-5850630	Msa0051740:CDS	30.0%
TTGCTTAAATCCTATGGTTA+TGG	-	chr1_2:5851070-5851089	None:intergenic	30.0%
TGAATGTTATAATGGTTGTG+TGG	+	chr1_2:5851182-5851201	Msa0051740:intron	30.0%

Showing 1 to 10 of 261 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	5850046	5853966	5850046	ID=Msa0051740;Name=Msa0051740
chr1_2	mRNA	5850046	5853966	5850046	ID=Msa0051740-mRNA-1;Parent=Msa0051740;Name=Msa0051740-mRNA-1;_AED=0.10;_eAED=0.10;_QI=153\|1\|1\|1\|1\|1\|6\|239\|313
chr1_2	exon	5850046	5850343	5850046	ID=Msa0051740-mRNA-1:exon:1826;Parent=Msa0051740-mRNA-1
chr1_2	exon	5850455	5850632	5850455	ID=Msa0051740-mRNA-1:exon:1827;Parent=Msa0051740-mRNA-1
chr1_2	exon	5851684	5851765	5851684	ID=Msa0051740-mRNA-1:exon:1828;Parent=Msa0051740-mRNA-1
chr1_2	exon	5852561	5852737	5852561	ID=Msa0051740-mRNA-1:exon:1829;Parent=Msa0051740-mRNA-1
chr1_2	exon	5852833	5853000	5852833	ID=Msa0051740-mRNA-1:exon:1830;Parent=Msa0051740-mRNA-1
chr1_2	exon	5853536	5853966	5853536	ID=Msa0051740-mRNA-1:exon:1831;Parent=Msa0051740-mRNA-1
chr1_2	five_prime_UTR	5850046	5850198	5850046	ID=Msa0051740-mRNA-1:five_prime_utr;Parent=Msa0051740-mRNA-1
chr1_2	CDS	5850199	5850343	5850199	ID=Msa0051740-mRNA-1:cds;Parent=Msa0051740-mRNA-1
chr1_2	CDS	5850455	5850632	5850455	ID=Msa0051740-mRNA-1:cds;Parent=Msa0051740-mRNA-1
chr1_2	CDS	5851684	5851765	5851684	ID=Msa0051740-mRNA-1:cds;Parent=Msa0051740-mRNA-1
chr1_2	CDS	5852561	5852737	5852561	ID=Msa0051740-mRNA-1:cds;Parent=Msa0051740-mRNA-1
chr1_2	CDS	5852833	5853000	5852833	ID=Msa0051740-mRNA-1:cds;Parent=Msa0051740-mRNA-1
chr1_2	CDS	5853536	5853727	5853536	ID=Msa0051740-mRNA-1:cds;Parent=Msa0051740-mRNA-1
chr1_2	three_prime_UTR	5853728	5853966	5853728	ID=Msa0051740-mRNA-1:three_prime_utr;Parent=Msa0051740-mRNA-1

Gene Sequence

>Msa0051740

ATGTCAGGTATGGAAAGACTTCAAAGAATGTTTGCGGGTGCAGGTGGAGCACTCGGCGGTCATCCACCACCGGATTCCCCCACCCTAGATTCATCTGAGCAAGTTTACATCTCTTCCCTTGCTCTTCTCAAAATGCTCAAACATGGTAGGGCTGGTGTACCTATGGAAGTTATGGGTTTAATGTTGGGGGAGTTCGTTGATGAGTATACTGTTAGGGTTGTTGATGTTTTTGCTATGCCTCAGAGTGGTACTGGTGTTAGTGTTGAAGCTGTTGATCATGTTTTTCAAACTAACATGCTTGATATGTTGAAACAAACTGGAAGGCCAGAGATGGTTGTAGGTTGGTATCATTCACATCCTGGATTTGGCTGCTGGCTTTCCGGTGTGGACATTAACACACAACAGAGTTTTGAGGCTTTAAATCAACGGGCAGTGGCTGTCGTGGTGGATCCTATTCAGAGTGTTAAAGGCAAGGTGGTCATTGATGCTTTCCGGCTGATTAATCCACAAACTATGATGCTGGGTCAAGAACCGCGACAGACAACCTCCAACTTGGGCCATCTGAACAAGCCATCTATCCAAGCTCTTATCCATGGCTTGAACCGACATTATTACTCAATAGCAATCAATTACAGGAAGAATGAGCTTGAAGAGAAGATGTTGCTTAACCTTCATAAGAAGAAATGGACTGATGGTTTGACACTCAGGCGATTTGATTCACATTCTAAAACTAATGAACAAACTGTTCAGGAGATGCTGAGTTTAGCAACCAAGTACAACAAGGCAGTGCAGGAGGAAGACGAGCTGTCACCAGAAAAACTTGCAATTGCCAATGTCGGAAGGCAGGATGCTAAGAAGCACCTTGAGGAGCATGTTTCTAATTTAATGTCATCAAACATTGTTCAGACTTTGGGAATGATGCTCGACACAGTTGTGTTCTAG

Protein sequence

>Msa0051740

MSGMERLQRMFAGAGGALGGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDSHSKTNEQTVQEMLSLATKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF*