AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0051750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051750 MtrunA17_Chr1g0153761 100.000 203 0 0 1 203 111 313 1.07e-152 425
Msa0051750 MtrunA17_Chr2g0284651 99.015 203 2 0 1 203 107 309 6.35e-152 423
Msa0051750 MtrunA17_Chr8g0334331 40.800 125 66 6 2 124 138 256 5.50e-18 80.9
Msa0051750 MtrunA17_Chr3g0138921 40.800 125 66 6 2 124 172 290 7.90e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051750 AT5G23540.2 97.044 203 6 0 1 203 57 259 9.20e-149 414
Msa0051750 AT5G23540.1 97.044 203 6 0 1 203 106 308 3.95e-148 414
Msa0051750 AT5G27607.1 88.889 36 4 0 1 36 81 116 1.11e-17 75.9
Msa0051750 AT1G71230.1 38.889 126 67 5 2 124 137 255 1.36e-16 77.4
Msa0051750 AT1G22920.2 40.000 125 67 6 2 124 137 255 3.16e-16 76.3
Msa0051750 AT1G22920.1 40.000 125 67 6 2 124 137 255 3.21e-16 76.3

Find 49 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATTTGGCTGCTGGCTTTC+CGG 0.193654 1_2:+5871828 Msa0051750:CDS
CACATCCTGGATTTGGCTGC+TGG 0.286015 1_2:+5871820 Msa0051750:CDS
CTGCACTGCCTTGTTGTACT+TGG 0.295287 1_2:-5873662 None:intergenic
AGGTGGTCATTGATGCTTTC+CGG 0.296529 1_2:+5872735 Msa0051750:CDS
TATCATTCACATCCTGGATT+TGG 0.322391 1_2:+5871813 Msa0051750:CDS
TCAAACATTGTTCAGACTTT+GGG 0.328260 1_2:+5873784 Msa0051750:CDS
GATCCTATTCAGAGTGTTAA+AGG 0.332585 1_2:+5872710 Msa0051750:CDS
ATCAAACATTGTTCAGACTT+TGG 0.343443 1_2:+5873783 Msa0051750:CDS
AAGACACTCACTTGGATAGA+TGG 0.346214 1_2:-5872833 None:intergenic
ACTCAATAGCAATCAATTAC+AGG 0.372816 1_2:+5872971 Msa0051750:CDS
TTGCCTTTAACACTCTGAAT+AGG 0.383773 1_2:-5872713 None:intergenic
TGACCCAGCATCATAGTTTG+TGG 0.401995 1_2:-5872767 None:intergenic
AACTAATGAACAAACTGTTC+AGG 0.404384 1_2:+5873086 Msa0051750:CDS
TTAACCTTCATAAGAAGAAA+TGG 0.410261 1_2:+5873022 Msa0051750:CDS
CAGTCCATTTCTTCTTATGA+AGG 0.428123 1_2:-5873026 None:intergenic
TTCAGGCCAGAGATGGTTGT+AGG 0.442433 1_2:+5871786 None:intergenic
GTTCAGATGGCCCAAGTTGG+AGG 0.446964 1_2:-5872807 None:intergenic
GCGACAGACAACCTCCAACT+TGG 0.454333 1_2:+5872796 Msa0051750:CDS
GGATAGATGGCTTGTTCAGA+TGG 0.463953 1_2:-5872820 None:intergenic
GGCTTTAAATCAACGGGCAG+TGG 0.464164 1_2:+5872676 Msa0051750:CDS
TAATCCACAAACTATGATGC+TGG 0.468722 1_2:+5872763 Msa0051750:CDS
GAAAGCCAGCAGCCAAATCC+AGG 0.481373 1_2:-5871825 None:intergenic
AGCATCCTGCCTTCCGACAT+TGG 0.486252 1_2:-5873722 None:intergenic
GGTTGGTATCATTCACATCC+TGG 0.489485 1_2:+5871807 Msa0051750:CDS
TAGTTTGTGGATTAATCAGC+CGG 0.499510 1_2:-5872754 None:intergenic
CAAGTACAACAAGGCAGTGC+AGG 0.499844 1_2:+5873663 Msa0051750:CDS
GGACTGATGGTTTGACACTC+AGG 0.502110 1_2:+5873043 Msa0051750:CDS
CGACAGACAACCTCCAACTT+GGG 0.511124 1_2:+5872797 Msa0051750:CDS
TGTGGACATTAACACACAAC+AGG 0.519212 1_2:+5871851 Msa0051750:CDS
AATTGCCAATGTCGGAAGGC+AGG 0.531358 1_2:+5873717 Msa0051750:CDS
AATAATGTCGGTTCAAGCCA+TGG 0.548960 1_2:-5872948 None:intergenic
TGGCTGCTGGCTTTCCGGTG+TGG 0.551510 1_2:+5871833 Msa0051750:CDS
CTTGTTCAGATGGCCCAAGT+TGG 0.556282 1_2:-5872810 None:intergenic
GGCCAGAGATGGTTGTAGGT+TGG 0.558155 1_2:+5871790 None:intergenic
CATAAGAAGAAATGGACTGA+TGG 0.560914 1_2:+5873030 Msa0051750:CDS
TTGCTATTGAGTAATAATGT+CGG 0.574217 1_2:-5872960 None:intergenic
TCAACGGGCAGTGGCTGTCG+TGG 0.579907 1_2:+5872685 Msa0051750:CDS
AATTAGAAACATGCTCCTCA+AGG 0.585638 1_2:-5873753 None:intergenic
AATCCACAAACTATGATGCT+GGG 0.587299 1_2:+5872764 Msa0051750:CDS
ACGGGCAGTGGCTGTCGTGG+TGG 0.593252 1_2:+5872688 Msa0051750:CDS
AAACTTGCAATTGCCAATGT+CGG 0.594399 1_2:+5873709 Msa0051750:CDS
GTACAACAAGGCAGTGCAGG+AGG 0.596933 1_2:+5873666 Msa0051750:CDS
AAGTTGGAGGTTGTCTGTCG+CGG 0.603477 1_2:-5872794 None:intergenic
TTGCAATTGCCAATGTCGGA+AGG 0.605525 1_2:+5873713 Msa0051750:CDS
TATTCAGAGTGTTAAAGGCA+AGG 0.607906 1_2:+5872715 Msa0051750:CDS
GGATGCTAAGAAGCACCTTG+AGG 0.677016 1_2:+5873738 Msa0051750:CDS
TTTAGCAACCAAGTACAACA+AGG 0.716028 1_2:+5873654 Msa0051750:CDS
TCAGAGTGTTAAAGGCAAGG+TGG 0.720728 1_2:+5872718 Msa0051750:CDS
TTGTGTGTTAATGTCCACAC+CGG 0.745909 1_2:-5871847 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTTTTCTTTATC+TGG + chr1_2:5873190-5873209 Msa0051750:intron 10.0%
!!! TTATTTATTTTTTCTTTATC+TGG + chr1_2:5873190-5873209 Msa0051750:intron 10.0%
!!! ATCTTTTTATTTTACTTGTT+TGG - chr1_2:5871948-5871967 None:intergenic 15.0%
!! ATGATATTTATGAAATTTCT+GGG + chr1_2:5871966-5871985 Msa0051750:intron 15.0%
!! TATGATATCATATAACAATA+CGG - chr1_2:5872186-5872205 None:intergenic 15.0%
!!! TTTCACAAACATTATTTTAT+CGG + chr1_2:5873379-5873398 Msa0051750:intron 15.0%
!!! ATCTTTTTATTTTACTTGTT+TGG - chr1_2:5871948-5871967 None:intergenic 15.0%
!! ATGATATTTATGAAATTTCT+GGG + chr1_2:5871966-5871985 Msa0051750:intron 15.0%
!! TATGATATCATATAACAATA+CGG - chr1_2:5872186-5872205 None:intergenic 15.0%
!!! TTTCACAAACATTATTTTAT+CGG + chr1_2:5873379-5873398 Msa0051750:intron 15.0%
!! GATGATATTTATGAAATTTC+TGG + chr1_2:5871965-5871984 Msa0051750:intron 20.0%
!! TGATATTTATGAAATTTCTG+GGG + chr1_2:5871967-5871986 Msa0051750:intron 20.0%
!!! AGTATTTTTATTGCTAAAGA+TGG + chr1_2:5872011-5872030 Msa0051750:intron 20.0%
!!! GTATTTTTATTGCTAAAGAT+GGG + chr1_2:5872012-5872031 Msa0051750:intron 20.0%
!! AGAAAAGTAAATTTATTTCC+TGG + chr1_2:5872041-5872060 Msa0051750:intron 20.0%
!! TAAATTTAATTGTTGCTCAT+AGG - chr1_2:5873325-5873344 None:intergenic 20.0%
!! GATGATATTTATGAAATTTC+TGG + chr1_2:5871965-5871984 Msa0051750:intron 20.0%
!! TGATATTTATGAAATTTCTG+GGG + chr1_2:5871967-5871986 Msa0051750:intron 20.0%
!!! AGTATTTTTATTGCTAAAGA+TGG + chr1_2:5872011-5872030 Msa0051750:intron 20.0%
!!! GTATTTTTATTGCTAAAGAT+GGG + chr1_2:5872012-5872031 Msa0051750:intron 20.0%
!! AGAAAAGTAAATTTATTTCC+TGG + chr1_2:5872041-5872060 Msa0051750:intron 20.0%
!! TAAATTTAATTGTTGCTCAT+AGG - chr1_2:5873325-5873344 None:intergenic 20.0%
!! GATATTTATGAAATTTCTGG+GGG + chr1_2:5871968-5871987 Msa0051750:intron 25.0%
!! ATATTTATGAAATTTCTGGG+GGG + chr1_2:5871969-5871988 Msa0051750:intron 25.0%
!! TAATGAGTTGGATCAAAATA+TGG - chr1_2:5872211-5872230 None:intergenic 25.0%
! ATTGAAACTAACTGTAAACT+AGG + chr1_2:5872523-5872542 Msa0051750:intron 25.0%
! TTGAAACTAACTGTAAACTA+GGG + chr1_2:5872524-5872543 Msa0051750:intron 25.0%
!!! AAATTTTAAAGACACTCACT+TGG - chr1_2:5872844-5872863 None:intergenic 25.0%
!! TTGCTATTGAGTAATAATGT+CGG - chr1_2:5872963-5872982 None:intergenic 25.0%
! TTAACCTTCATAAGAAGAAA+TGG + chr1_2:5873022-5873041 Msa0051750:CDS 25.0%
! GATTCTACTAATTTAAGTCA+AGG - chr1_2:5873547-5873566 None:intergenic 25.0%
!! GATATTTATGAAATTTCTGG+GGG + chr1_2:5871968-5871987 Msa0051750:intron 25.0%
!! ATATTTATGAAATTTCTGGG+GGG + chr1_2:5871969-5871988 Msa0051750:intron 25.0%
!! TAATGAGTTGGATCAAAATA+TGG - chr1_2:5872211-5872230 None:intergenic 25.0%
! ATTGAAACTAACTGTAAACT+AGG + chr1_2:5872523-5872542 Msa0051750:intron 25.0%
! TTGAAACTAACTGTAAACTA+GGG + chr1_2:5872524-5872543 Msa0051750:intron 25.0%
!!! AAATTTTAAAGACACTCACT+TGG - chr1_2:5872844-5872863 None:intergenic 25.0%
!! TTGCTATTGAGTAATAATGT+CGG - chr1_2:5872963-5872982 None:intergenic 25.0%
! TTAACCTTCATAAGAAGAAA+TGG + chr1_2:5873022-5873041 Msa0051750:CDS 25.0%
! GATTCTACTAATTTAAGTCA+AGG - chr1_2:5873547-5873566 None:intergenic 25.0%
ACATGTAGAGATTAATGAGT+TGG - chr1_2:5872223-5872242 None:intergenic 30.0%
CTCTACATGTGTATAAGAAT+TGG + chr1_2:5872233-5872252 Msa0051750:intron 30.0%
! TTTATAGATTATGAAGTGCC+TGG + chr1_2:5872490-5872509 Msa0051750:intron 30.0%
GTTTCAATTACAAATTCTCC+AGG - chr1_2:5872511-5872530 None:intergenic 30.0%
! TTATCTATTGCAGAGTTTTG+AGG + chr1_2:5872655-5872674 Msa0051750:intron 30.0%
!!! GTTTTGAGGCTTTAAATCAA+CGG + chr1_2:5872669-5872688 Msa0051750:CDS 30.0%
!!! TTTTGAGGCTTTAAATCAAC+GGG + chr1_2:5872670-5872689 Msa0051750:CDS 30.0%
! TGACTTCAAATTCTCCTTTT+AGG + chr1_2:5872918-5872937 Msa0051750:intron 30.0%
ACTCAATAGCAATCAATTAC+AGG + chr1_2:5872971-5872990 Msa0051750:CDS 30.0%
AACTAATGAACAAACTGTTC+AGG + chr1_2:5873086-5873105 Msa0051750:CDS 30.0%
TTCAGGTATGTTAAGATTCT+TGG + chr1_2:5873103-5873122 Msa0051750:intron 30.0%
TCAGGTATGTTAAGATTCTT+GGG + chr1_2:5873104-5873123 Msa0051750:intron 30.0%
AGAAGAGAACAGAAAAAAGA+AGG - chr1_2:5873157-5873176 None:intergenic 30.0%
CATAAGTTTCATCATGTTGT+AGG + chr1_2:5873249-5873268 Msa0051750:intron 30.0%
ATTTAATTGTTGCTCATAGG+TGG - chr1_2:5873322-5873341 None:intergenic 30.0%
TACACGAAAATACAAAGACA+GGG - chr1_2:5873428-5873447 None:intergenic 30.0%
ATACACGAAAATACAAAGAC+AGG - chr1_2:5873429-5873448 None:intergenic 30.0%
! TATTTTCGTGTATGATGTTG+TGG + chr1_2:5873436-5873455 Msa0051750:intron 30.0%
! ATTTTCGTGTATGATGTTGT+GGG + chr1_2:5873437-5873456 Msa0051750:intron 30.0%
TAATGGTTTATTCTCGAGAA+TGG + chr1_2:5873480-5873499 Msa0051750:intron 30.0%
ATCAAACATTGTTCAGACTT+TGG + chr1_2:5873783-5873802 Msa0051750:CDS 30.0%
TCAAACATTGTTCAGACTTT+GGG + chr1_2:5873784-5873803 Msa0051750:CDS 30.0%
ACATGTAGAGATTAATGAGT+TGG - chr1_2:5872223-5872242 None:intergenic 30.0%
CTCTACATGTGTATAAGAAT+TGG + chr1_2:5872233-5872252 Msa0051750:intron 30.0%
! TTTATAGATTATGAAGTGCC+TGG + chr1_2:5872490-5872509 Msa0051750:intron 30.0%
GTTTCAATTACAAATTCTCC+AGG - chr1_2:5872511-5872530 None:intergenic 30.0%
! TTATCTATTGCAGAGTTTTG+AGG + chr1_2:5872655-5872674 Msa0051750:intron 30.0%
!!! GTTTTGAGGCTTTAAATCAA+CGG + chr1_2:5872669-5872688 Msa0051750:CDS 30.0%
!!! TTTTGAGGCTTTAAATCAAC+GGG + chr1_2:5872670-5872689 Msa0051750:CDS 30.0%
! TGACTTCAAATTCTCCTTTT+AGG + chr1_2:5872918-5872937 Msa0051750:intron 30.0%
ACTCAATAGCAATCAATTAC+AGG + chr1_2:5872971-5872990 Msa0051750:CDS 30.0%
AACTAATGAACAAACTGTTC+AGG + chr1_2:5873086-5873105 Msa0051750:CDS 30.0%
TTCAGGTATGTTAAGATTCT+TGG + chr1_2:5873103-5873122 Msa0051750:intron 30.0%
TCAGGTATGTTAAGATTCTT+GGG + chr1_2:5873104-5873123 Msa0051750:intron 30.0%
AGAAGAGAACAGAAAAAAGA+AGG - chr1_2:5873157-5873176 None:intergenic 30.0%
CATAAGTTTCATCATGTTGT+AGG + chr1_2:5873249-5873268 Msa0051750:intron 30.0%
ATTTAATTGTTGCTCATAGG+TGG - chr1_2:5873322-5873341 None:intergenic 30.0%
TACACGAAAATACAAAGACA+GGG - chr1_2:5873428-5873447 None:intergenic 30.0%
ATACACGAAAATACAAAGAC+AGG - chr1_2:5873429-5873448 None:intergenic 30.0%
! TATTTTCGTGTATGATGTTG+TGG + chr1_2:5873436-5873455 Msa0051750:intron 30.0%
! ATTTTCGTGTATGATGTTGT+GGG + chr1_2:5873437-5873456 Msa0051750:intron 30.0%
TAATGGTTTATTCTCGAGAA+TGG + chr1_2:5873480-5873499 Msa0051750:intron 30.0%
ATCAAACATTGTTCAGACTT+TGG + chr1_2:5873783-5873802 Msa0051750:CDS 30.0%
TCAAACATTGTTCAGACTTT+GGG + chr1_2:5873784-5873803 Msa0051750:CDS 30.0%
TATCATTCACATCCTGGATT+TGG + chr1_2:5871813-5871832 Msa0051750:CDS 35.0%
AGAACACTAAAGCATAATCC+AGG - chr1_2:5872062-5872081 None:intergenic 35.0%
ATTACCCCACATTCTTAGAT+TGG + chr1_2:5872324-5872343 Msa0051750:intron 35.0%
TTACCCCACATTCTTAGATT+GGG + chr1_2:5872325-5872344 Msa0051750:intron 35.0%
ACATCCCAATCTAAGAATGT+GGG - chr1_2:5872332-5872351 None:intergenic 35.0%
AACATCCCAATCTAAGAATG+TGG - chr1_2:5872333-5872352 None:intergenic 35.0%
! GATCCTATTCAGAGTGTTAA+AGG + chr1_2:5872710-5872729 Msa0051750:CDS 35.0%
TTGCCTTTAACACTCTGAAT+AGG - chr1_2:5872716-5872735 None:intergenic 35.0%
! TATTCAGAGTGTTAAAGGCA+AGG + chr1_2:5872715-5872734 Msa0051750:CDS 35.0%
! TAGTTTGTGGATTAATCAGC+CGG - chr1_2:5872757-5872776 None:intergenic 35.0%
TAATCCACAAACTATGATGC+TGG + chr1_2:5872763-5872782 Msa0051750:CDS 35.0%
AATCCACAAACTATGATGCT+GGG + chr1_2:5872764-5872783 Msa0051750:CDS 35.0%
CAGTCCATTTCTTCTTATGA+AGG - chr1_2:5873029-5873048 None:intergenic 35.0%
!! CATAAGAAGAAATGGACTGA+TGG + chr1_2:5873030-5873049 Msa0051750:CDS 35.0%
AGCAATCTATCATCAACTAC+AGG - chr1_2:5873511-5873530 None:intergenic 35.0%
! TCATGATTTTTGCGCAATTC+AGG + chr1_2:5873621-5873640 Msa0051750:intron 35.0%
TTTAGCAACCAAGTACAACA+AGG + chr1_2:5873654-5873673 Msa0051750:CDS 35.0%
! TTGGCAATTGCAAGTTTTTC+TGG - chr1_2:5873706-5873725 None:intergenic 35.0%
AAACTTGCAATTGCCAATGT+CGG + chr1_2:5873709-5873728 Msa0051750:CDS 35.0%
AATTAGAAACATGCTCCTCA+AGG - chr1_2:5873756-5873775 None:intergenic 35.0%
TATCATTCACATCCTGGATT+TGG + chr1_2:5871813-5871832 Msa0051750:CDS 35.0%
AGAACACTAAAGCATAATCC+AGG - chr1_2:5872062-5872081 None:intergenic 35.0%
ATTACCCCACATTCTTAGAT+TGG + chr1_2:5872324-5872343 Msa0051750:intron 35.0%
TTACCCCACATTCTTAGATT+GGG + chr1_2:5872325-5872344 Msa0051750:intron 35.0%
ACATCCCAATCTAAGAATGT+GGG - chr1_2:5872332-5872351 None:intergenic 35.0%
AACATCCCAATCTAAGAATG+TGG - chr1_2:5872333-5872352 None:intergenic 35.0%
! GATCCTATTCAGAGTGTTAA+AGG + chr1_2:5872710-5872729 Msa0051750:CDS 35.0%
TTGCCTTTAACACTCTGAAT+AGG - chr1_2:5872716-5872735 None:intergenic 35.0%
! TATTCAGAGTGTTAAAGGCA+AGG + chr1_2:5872715-5872734 Msa0051750:CDS 35.0%
! TAGTTTGTGGATTAATCAGC+CGG - chr1_2:5872757-5872776 None:intergenic 35.0%
TAATCCACAAACTATGATGC+TGG + chr1_2:5872763-5872782 Msa0051750:CDS 35.0%
AATCCACAAACTATGATGCT+GGG + chr1_2:5872764-5872783 Msa0051750:CDS 35.0%
CAGTCCATTTCTTCTTATGA+AGG - chr1_2:5873029-5873048 None:intergenic 35.0%
!! CATAAGAAGAAATGGACTGA+TGG + chr1_2:5873030-5873049 Msa0051750:CDS 35.0%
AGCAATCTATCATCAACTAC+AGG - chr1_2:5873511-5873530 None:intergenic 35.0%
! TCATGATTTTTGCGCAATTC+AGG + chr1_2:5873621-5873640 Msa0051750:intron 35.0%
TTTAGCAACCAAGTACAACA+AGG + chr1_2:5873654-5873673 Msa0051750:CDS 35.0%
! TTGGCAATTGCAAGTTTTTC+TGG - chr1_2:5873706-5873725 None:intergenic 35.0%
AAACTTGCAATTGCCAATGT+CGG + chr1_2:5873709-5873728 Msa0051750:CDS 35.0%
AATTAGAAACATGCTCCTCA+AGG - chr1_2:5873756-5873775 None:intergenic 35.0%
TTGTGTGTTAATGTCCACAC+CGG - chr1_2:5871850-5871869 None:intergenic 40.0%
TGTGGACATTAACACACAAC+AGG + chr1_2:5871851-5871870 Msa0051750:CDS 40.0%
CAAACCTTATCCCACTAAGT+GGG + chr1_2:5872136-5872155 Msa0051750:intron 40.0%
AAACCTTATCCCACTAAGTG+GGG + chr1_2:5872137-5872156 Msa0051750:intron 40.0%
ATTGGTGCAAGCACTTGAAT+AGG + chr1_2:5872251-5872270 Msa0051750:intron 40.0%
TTGGAGGTTCAATGCTACAA+CGG - chr1_2:5872291-5872310 None:intergenic 40.0%
! AATATGATGATGAGCCTTGG+AGG - chr1_2:5872307-5872326 None:intergenic 40.0%
! GGTAATATGATGATGAGCCT+TGG - chr1_2:5872310-5872329 None:intergenic 40.0%
CATCCCAATCTAAGAATGTG+GGG - chr1_2:5872331-5872350 None:intergenic 40.0%
ATAACAGCACTATCCACACA+AGG - chr1_2:5872601-5872620 None:intergenic 40.0%
AAGACACTCACTTGGATAGA+TGG - chr1_2:5872836-5872855 None:intergenic 40.0%
! TCCTTTTAGGCTCTTATCCA+TGG + chr1_2:5872931-5872950 Msa0051750:intron 40.0%
!! AATAATGTCGGTTCAAGCCA+TGG - chr1_2:5872951-5872970 None:intergenic 40.0%
ACGCGCTATGTCAAATATCT+AGG - chr1_2:5873286-5873305 None:intergenic 40.0%
! TGTGAACGATTTTGCTCACT+TGG + chr1_2:5873347-5873366 Msa0051750:intron 40.0%
CACACACTCACTGTAATCAA+AGG + chr1_2:5873580-5873599 Msa0051750:intron 40.0%
TTGTGTGTTAATGTCCACAC+CGG - chr1_2:5871850-5871869 None:intergenic 40.0%
TGTGGACATTAACACACAAC+AGG + chr1_2:5871851-5871870 Msa0051750:CDS 40.0%
CAAACCTTATCCCACTAAGT+GGG + chr1_2:5872136-5872155 Msa0051750:intron 40.0%
AAACCTTATCCCACTAAGTG+GGG + chr1_2:5872137-5872156 Msa0051750:intron 40.0%
ATTGGTGCAAGCACTTGAAT+AGG + chr1_2:5872251-5872270 Msa0051750:intron 40.0%
TTGGAGGTTCAATGCTACAA+CGG - chr1_2:5872291-5872310 None:intergenic 40.0%
! AATATGATGATGAGCCTTGG+AGG - chr1_2:5872307-5872326 None:intergenic 40.0%
! GGTAATATGATGATGAGCCT+TGG - chr1_2:5872310-5872329 None:intergenic 40.0%
CATCCCAATCTAAGAATGTG+GGG - chr1_2:5872331-5872350 None:intergenic 40.0%
ATAACAGCACTATCCACACA+AGG - chr1_2:5872601-5872620 None:intergenic 40.0%
AAGACACTCACTTGGATAGA+TGG - chr1_2:5872836-5872855 None:intergenic 40.0%
! TCCTTTTAGGCTCTTATCCA+TGG + chr1_2:5872931-5872950 Msa0051750:intron 40.0%
!! AATAATGTCGGTTCAAGCCA+TGG - chr1_2:5872951-5872970 None:intergenic 40.0%
ACGCGCTATGTCAAATATCT+AGG - chr1_2:5873286-5873305 None:intergenic 40.0%
! TGTGAACGATTTTGCTCACT+TGG + chr1_2:5873347-5873366 Msa0051750:intron 40.0%
CACACACTCACTGTAATCAA+AGG + chr1_2:5873580-5873599 Msa0051750:intron 40.0%
! GGTTGGTATCATTCACATCC+TGG + chr1_2:5871807-5871826 Msa0051750:CDS 45.0%
CCACTTAGTGGGATAAGGTT+TGG - chr1_2:5872138-5872157 None:intergenic 45.0%
CCAAACCTTATCCCACTAAG+TGG + chr1_2:5872135-5872154 Msa0051750:intron 45.0%
TGCAAGCACTTGAATAGGAG+AGG + chr1_2:5872256-5872275 Msa0051750:intron 45.0%
TGGAGGTTCAATGCTACAAC+GGG - chr1_2:5872290-5872309 None:intergenic 45.0%
! GTTGTAGCATTGAACCTCCA+AGG + chr1_2:5872290-5872309 Msa0051750:intron 45.0%
TACTAGCAAGCTAGCTAGCT+GGG + chr1_2:5872357-5872376 Msa0051750:intron 45.0%
AGCTGGGTGGTATAAACTTG+TGG + chr1_2:5872373-5872392 Msa0051750:intron 45.0%
!! ATCCACACAAGGCATTGTCA+TGG - chr1_2:5872590-5872609 None:intergenic 45.0%
! TCAGAGTGTTAAAGGCAAGG+TGG + chr1_2:5872718-5872737 Msa0051750:CDS 45.0%
AGGTGGTCATTGATGCTTTC+CGG + chr1_2:5872735-5872754 Msa0051750:CDS 45.0%
TGACCCAGCATCATAGTTTG+TGG - chr1_2:5872770-5872789 None:intergenic 45.0%
!! GGATAGATGGCTTGTTCAGA+TGG - chr1_2:5872823-5872842 None:intergenic 45.0%
GCCATGGATAAGAGCCTAAA+AGG - chr1_2:5872935-5872954 None:intergenic 45.0%
AAACCATTAAGCAACCCCTC+AGG - chr1_2:5873469-5873488 None:intergenic 45.0%
GTGAGTGTGTGTCTGTTCAA+TGG - chr1_2:5873571-5873590 None:intergenic 45.0%
TTGCAATTGCCAATGTCGGA+AGG + chr1_2:5873713-5873732 Msa0051750:CDS 45.0%
! GGTTGGTATCATTCACATCC+TGG + chr1_2:5871807-5871826 Msa0051750:CDS 45.0%
CCACTTAGTGGGATAAGGTT+TGG - chr1_2:5872138-5872157 None:intergenic 45.0%
CCAAACCTTATCCCACTAAG+TGG + chr1_2:5872135-5872154 Msa0051750:intron 45.0%
TGCAAGCACTTGAATAGGAG+AGG + chr1_2:5872256-5872275 Msa0051750:intron 45.0%
TGGAGGTTCAATGCTACAAC+GGG - chr1_2:5872290-5872309 None:intergenic 45.0%
! GTTGTAGCATTGAACCTCCA+AGG + chr1_2:5872290-5872309 Msa0051750:intron 45.0%
TACTAGCAAGCTAGCTAGCT+GGG + chr1_2:5872357-5872376 Msa0051750:intron 45.0%
AGCTGGGTGGTATAAACTTG+TGG + chr1_2:5872373-5872392 Msa0051750:intron 45.0%
!! ATCCACACAAGGCATTGTCA+TGG - chr1_2:5872590-5872609 None:intergenic 45.0%
! TCAGAGTGTTAAAGGCAAGG+TGG + chr1_2:5872718-5872737 Msa0051750:CDS 45.0%
AGGTGGTCATTGATGCTTTC+CGG + chr1_2:5872735-5872754 Msa0051750:CDS 45.0%
TGACCCAGCATCATAGTTTG+TGG - chr1_2:5872770-5872789 None:intergenic 45.0%
!! GGATAGATGGCTTGTTCAGA+TGG - chr1_2:5872823-5872842 None:intergenic 45.0%
GCCATGGATAAGAGCCTAAA+AGG - chr1_2:5872935-5872954 None:intergenic 45.0%
AAACCATTAAGCAACCCCTC+AGG - chr1_2:5873469-5873488 None:intergenic 45.0%
GTGAGTGTGTGTCTGTTCAA+TGG - chr1_2:5873571-5873590 None:intergenic 45.0%
TTGCAATTGCCAATGTCGGA+AGG + chr1_2:5873713-5873732 Msa0051750:CDS 45.0%
TGACCCCACTTAGTGGGATA+AGG - chr1_2:5872143-5872162 None:intergenic 50.0%
TTATCCCACTAAGTGGGGTC+AGG + chr1_2:5872142-5872161 Msa0051750:intron 50.0%
TGTACCTGACCCCACTTAGT+GGG - chr1_2:5872149-5872168 None:intergenic 50.0%
ATGTACCTGACCCCACTTAG+TGG - chr1_2:5872150-5872169 None:intergenic 50.0%
ACTAAGTGGGGTCAGGTACA+TGG + chr1_2:5872149-5872168 Msa0051750:intron 50.0%
CTACTAGCAAGCTAGCTAGC+TGG + chr1_2:5872356-5872375 Msa0051750:intron 50.0%
AGCCATGACAATGCCTTGTG+TGG + chr1_2:5872585-5872604 Msa0051750:intron 50.0%
!! GGCTTTAAATCAACGGGCAG+TGG + chr1_2:5872676-5872695 Msa0051750:CDS 50.0%
AAGTTGGAGGTTGTCTGTCG+CGG - chr1_2:5872797-5872816 None:intergenic 50.0%
CGACAGACAACCTCCAACTT+GGG + chr1_2:5872797-5872816 Msa0051750:CDS 50.0%
CTTGTTCAGATGGCCCAAGT+TGG - chr1_2:5872813-5872832 None:intergenic 50.0%
GGACTGATGGTTTGACACTC+AGG + chr1_2:5873043-5873062 Msa0051750:CDS 50.0%
ATGTTGTGGGTGTAGACCTG+AGG + chr1_2:5873450-5873469 Msa0051750:intron 50.0%
TGTTGTGGGTGTAGACCTGA+GGG + chr1_2:5873451-5873470 Msa0051750:intron 50.0%
AGACCTGAGGGGTTGCTTAA+TGG + chr1_2:5873463-5873482 Msa0051750:intron 50.0%
! CTGCACTGCCTTGTTGTACT+TGG - chr1_2:5873665-5873684 None:intergenic 50.0%
CAAGTACAACAAGGCAGTGC+AGG + chr1_2:5873663-5873682 Msa0051750:CDS 50.0%
AATTGCCAATGTCGGAAGGC+AGG + chr1_2:5873717-5873736 Msa0051750:CDS 50.0%
!! GGATGCTAAGAAGCACCTTG+AGG + chr1_2:5873738-5873757 Msa0051750:CDS 50.0%
TGACCCCACTTAGTGGGATA+AGG - chr1_2:5872143-5872162 None:intergenic 50.0%
TTATCCCACTAAGTGGGGTC+AGG + chr1_2:5872142-5872161 Msa0051750:intron 50.0%
TGTACCTGACCCCACTTAGT+GGG - chr1_2:5872149-5872168 None:intergenic 50.0%
ATGTACCTGACCCCACTTAG+TGG - chr1_2:5872150-5872169 None:intergenic 50.0%
ACTAAGTGGGGTCAGGTACA+TGG + chr1_2:5872149-5872168 Msa0051750:intron 50.0%
CTACTAGCAAGCTAGCTAGC+TGG + chr1_2:5872356-5872375 Msa0051750:intron 50.0%
AGCCATGACAATGCCTTGTG+TGG + chr1_2:5872585-5872604 Msa0051750:intron 50.0%
!! GGCTTTAAATCAACGGGCAG+TGG + chr1_2:5872676-5872695 Msa0051750:CDS 50.0%
AAGTTGGAGGTTGTCTGTCG+CGG - chr1_2:5872797-5872816 None:intergenic 50.0%
CGACAGACAACCTCCAACTT+GGG + chr1_2:5872797-5872816 Msa0051750:CDS 50.0%
CTTGTTCAGATGGCCCAAGT+TGG - chr1_2:5872813-5872832 None:intergenic 50.0%
GGACTGATGGTTTGACACTC+AGG + chr1_2:5873043-5873062 Msa0051750:CDS 50.0%
ATGTTGTGGGTGTAGACCTG+AGG + chr1_2:5873450-5873469 Msa0051750:intron 50.0%
TGTTGTGGGTGTAGACCTGA+GGG + chr1_2:5873451-5873470 Msa0051750:intron 50.0%
AGACCTGAGGGGTTGCTTAA+TGG + chr1_2:5873463-5873482 Msa0051750:intron 50.0%
! CTGCACTGCCTTGTTGTACT+TGG - chr1_2:5873665-5873684 None:intergenic 50.0%
CAAGTACAACAAGGCAGTGC+AGG + chr1_2:5873663-5873682 Msa0051750:CDS 50.0%
AATTGCCAATGTCGGAAGGC+AGG + chr1_2:5873717-5873736 Msa0051750:CDS 50.0%
!! GGATGCTAAGAAGCACCTTG+AGG + chr1_2:5873738-5873757 Msa0051750:CDS 50.0%
CACATCCTGGATTTGGCTGC+TGG + chr1_2:5871820-5871839 Msa0051750:CDS 55.0%
GAAAGCCAGCAGCCAAATCC+AGG - chr1_2:5871828-5871847 None:intergenic 55.0%
!! GGATTTGGCTGCTGGCTTTC+CGG + chr1_2:5871828-5871847 Msa0051750:CDS 55.0%
TAGCAAGCTAGCTAGCTGGG+TGG + chr1_2:5872360-5872379 Msa0051750:intron 55.0%
GCGACAGACAACCTCCAACT+TGG + chr1_2:5872796-5872815 Msa0051750:CDS 55.0%
! GTTCAGATGGCCCAAGTTGG+AGG - chr1_2:5872810-5872829 None:intergenic 55.0%
GTTGTGGGTGTAGACCTGAG+GGG + chr1_2:5873452-5873471 Msa0051750:intron 55.0%
GTACAACAAGGCAGTGCAGG+AGG + chr1_2:5873666-5873685 Msa0051750:CDS 55.0%
AGCATCCTGCCTTCCGACAT+TGG - chr1_2:5873725-5873744 None:intergenic 55.0%
CACATCCTGGATTTGGCTGC+TGG + chr1_2:5871820-5871839 Msa0051750:CDS 55.0%
GAAAGCCAGCAGCCAAATCC+AGG - chr1_2:5871828-5871847 None:intergenic 55.0%
!! GGATTTGGCTGCTGGCTTTC+CGG + chr1_2:5871828-5871847 Msa0051750:CDS 55.0%
TAGCAAGCTAGCTAGCTGGG+TGG + chr1_2:5872360-5872379 Msa0051750:intron 55.0%
GCGACAGACAACCTCCAACT+TGG + chr1_2:5872796-5872815 Msa0051750:CDS 55.0%
! GTTCAGATGGCCCAAGTTGG+AGG - chr1_2:5872810-5872829 None:intergenic 55.0%
GTTGTGGGTGTAGACCTGAG+GGG + chr1_2:5873452-5873471 Msa0051750:intron 55.0%
GTACAACAAGGCAGTGCAGG+AGG + chr1_2:5873666-5873685 Msa0051750:CDS 55.0%
AGCATCCTGCCTTCCGACAT+TGG - chr1_2:5873725-5873744 None:intergenic 55.0%
!! TGGCTGCTGGCTTTCCGGTG+TGG + chr1_2:5871833-5871852 Msa0051750:CDS 65.0%
TCAACGGGCAGTGGCTGTCG+TGG + chr1_2:5872685-5872704 Msa0051750:CDS 65.0%
!! TGGCTGCTGGCTTTCCGGTG+TGG + chr1_2:5871833-5871852 Msa0051750:CDS 65.0%
TCAACGGGCAGTGGCTGTCG+TGG + chr1_2:5872685-5872704 Msa0051750:CDS 65.0%
ACGGGCAGTGGCTGTCGTGG+TGG + chr1_2:5872688-5872707 Msa0051750:CDS 70.0%
ACGGGCAGTGGCTGTCGTGG+TGG + chr1_2:5872688-5872707 Msa0051750:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 5871798 5873834 5871798 ID=Msa0051750;Name=Msa0051750
chr1_2 mRNA 5871798 5873834 5871798 ID=Msa0051750-mRNA-1;Parent=Msa0051750;Name=Msa0051750-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|4|0|203
chr1_2 exon 5871798 5871872 5871798 ID=Msa0051750-mRNA-1:exon:1843;Parent=Msa0051750-mRNA-1
chr1_2 exon 5872668 5872844 5872668 ID=Msa0051750-mRNA-1:exon:1844;Parent=Msa0051750-mRNA-1
chr1_2 exon 5872940 5873107 5872940 ID=Msa0051750-mRNA-1:exon:1845;Parent=Msa0051750-mRNA-1
chr1_2 exon 5873643 5873834 5873643 ID=Msa0051750-mRNA-1:exon:1846;Parent=Msa0051750-mRNA-1
chr1_2 CDS 5871798 5871872 5871798 ID=Msa0051750-mRNA-1:cds;Parent=Msa0051750-mRNA-1
chr1_2 CDS 5872668 5872844 5872668 ID=Msa0051750-mRNA-1:cds;Parent=Msa0051750-mRNA-1
chr1_2 CDS 5872940 5873107 5872940 ID=Msa0051750-mRNA-1:cds;Parent=Msa0051750-mRNA-1
chr1_2 CDS 5873643 5873834 5873643 ID=Msa0051750-mRNA-1:cds;Parent=Msa0051750-mRNA-1
Gene Sequence

>Msa0051750

ATGGTTGTAGGTTGGTATCATTCACATCCTGGATTTGGCTGCTGGCTTTCCGGTGTGGACATTAACACACAACAGAGTTTTGAGGCTTTAAATCAACGGGCAGTGGCTGTCGTGGTGGATCCTATTCAGAGTGTTAAAGGCAAGGTGGTCATTGATGCTTTCCGGCTGATTAATCCACAAACTATGATGCTGGGTCAAGAACCGCGACAGACAACCTCCAACTTGGGCCATCTGAACAAGCCATCTATCCAAGCTCTTATCCATGGCTTGAACCGACATTATTACTCAATAGCAATCAATTACAGGAAGAATGAGCTTGAAGAGAAGATGTTGCTTAACCTTCATAAGAAGAAATGGACTGATGGTTTGACACTCAGGCGATTTGATTCACATTCTAAAACTAATGAACAAACTGTTCAGGAGATGCTGAGTTTAGCAACCAAGTACAACAAGGCAGTGCAGGAGGAAGACGAGCTGTCACCAGAAAAACTTGCAATTGCCAATGTCGGAAGGCAGGATGCTAAGAAGCACCTTGAGGAGCATGTTTCTAATTTAATGTCATCAAACATTGTTCAGACTTTGGGAATGATGCTCGACACAGTTGTGTTCTAG

Protein sequence

>Msa0051750

MVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDSHSKTNEQTVQEMLSLATKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF*