AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1219250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1219250 MtrunA17_Chr8g0365881 89.474 361 5 2 1 361 1 328 0.0 654
Msa1219250 MtrunA17_Chr8g0364141 79.630 54 11 0 278 331 8 61 2.86e-22 91.7
Msa1219250 MtrunA17_Chr4g0068451 30.802 237 123 4 81 313 14 213 6.42e-21 90.9
Msa1219250 MtrunA17_Chr4g0055741 23.750 320 212 5 37 355 10 298 5.91e-18 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1219250 AT1G60550.1 70.845 367 71 5 1 361 1 337 0.0 520
Msa1219250 AT4G16800.1 25.000 276 175 3 82 355 54 299 1.84e-21 93.6

Find 91 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTGCAATTACTGGTTT+TGG 0.240337 8_1:-82051838 None:intergenic
GGCTGTTGAAGCAGAGAAAA+TGG 0.259099 8_1:+82052357 Msa1219250:CDS
CCTTAATGTGTTAGACTTGC+AGG 0.280510 8_1:+82051274 Msa1219250:CDS
GAGAGTACCATTGCAATTAC+TGG 0.312032 8_1:-82051844 None:intergenic
GCAGCAGATAATGCTATCTT+TGG 0.320415 8_1:+82052003 Msa1219250:CDS
TCTATAGAATAAAACTGATT+TGG 0.328989 8_1:+82053176 Msa1219250:three_prime_UTR
TTCCTTCTCATGATGTTGTT+TGG 0.337790 8_1:+82049617 Msa1219250:CDS
TCAAGTTACCAACGTGTTCA+TGG 0.366573 8_1:+82049589 Msa1219250:CDS
TGACGGGCACGCTGGACTTC+AGG 0.368255 8_1:+82052834 Msa1219250:CDS
AATGCTATCTTTGGCCAAAC+TGG 0.368332 8_1:+82052012 Msa1219250:CDS
CCTGCAAGTCTAACACATTA+AGG 0.368951 8_1:-82051274 None:intergenic
GCAGGGTATGCTGTTGGAGG+AGG 0.377182 8_1:+82051946 Msa1219250:CDS
TTCTCTAAATTATAGGAAAT+GGG 0.379648 8_1:+82052977 Msa1219250:intron
AAATAGCCCAACCGCAATTC+GGG 0.383989 8_1:+82052783 Msa1219250:CDS
GGGAGCTTTGATGCTGGTTA+TGG 0.384393 8_1:+82052171 Msa1219250:CDS
GTTTCTCACAAGGTTCTATA+CGG 0.403885 8_1:+82052336 Msa1219250:CDS
GAAATAGCCCAACCGCAATT+CGG 0.406545 8_1:+82052782 Msa1219250:CDS
CTAACATTAACACAGGTTGC+AGG 0.410643 8_1:+82051928 Msa1219250:CDS
TATTCTGATCATGAAAATAT+CGG 0.418618 8_1:+82051248 Msa1219250:CDS
ATCATCATCTTCAATGTCAT+TGG 0.421137 8_1:+82049415 Msa1219250:five_prime_UTR
CCATTGGAGAAATGAGCTAT+AGG 0.421367 8_1:-82049450 None:intergenic
GAAGCACCTTAGGACCAGTT+TGG 0.426368 8_1:-82052026 None:intergenic
AGGAGGGCATATATTGCATA+TGG 0.429416 8_1:+82051963 Msa1219250:CDS
TACTGCAGATTAGTATTAAT+AGG 0.436523 8_1:+82050395 Msa1219250:intron
CATGTTAGTTTATTTGAGGC+TGG 0.445533 8_1:+82053209 Msa1219250:three_prime_UTR
AGTTCATGTTAGTTTATTTG+AGG 0.446503 8_1:+82053205 Msa1219250:three_prime_UTR
ATGTCTTTGTTGTTTGCCAT+TGG 0.466222 8_1:-82049466 None:intergenic
CGAAAAGCATTCCTTCTCTC+TGG 0.468770 8_1:-82050418 None:intergenic
TTGAGAACCCGAATTGCGGT+TGG 0.473250 8_1:-82052790 None:intergenic
CTATTAATGCAGTGGATGAC+GGG 0.487601 8_1:+82052818 Msa1219250:CDS
AAGTTCTATCATGTCACGTT+TGG 0.491658 8_1:+82052194 Msa1219250:CDS
CTGGTACAACAGTATTGATA+AGG 0.497909 8_1:-82052381 None:intergenic
GCTATTAATGCAGTGGATGA+CGG 0.498064 8_1:+82052817 Msa1219250:CDS
AAATAATTTGCAGCTGCTGA+AGG 0.500500 8_1:-82051904 None:intergenic
GATGATGATGATGGTGGGAG+TGG 0.501186 8_1:-82049398 None:intergenic
TGAGAACCCGAATTGCGGTT+GGG 0.503855 8_1:-82052789 None:intergenic
AAGAAACAATCAAATGGTGT+AGG 0.506674 8_1:+82052749 Msa1219250:CDS
TCATGATCAGAATAACCATC+TGG 0.512939 8_1:-82051239 None:intergenic
TTCTGATGATGATGAAGGAA+AGG 0.516790 8_1:+82049651 Msa1219250:CDS
CTTTGGCCAAACTGGTCCTA+AGG 0.517904 8_1:+82052020 Msa1219250:CDS
GTTCCTTCTGATGATGATGA+AGG 0.518812 8_1:+82049646 Msa1219250:CDS
TTGATGTTGGAGAGGAAACA+AGG 0.525526 8_1:-82049528 None:intergenic
GCTGTTGAAGCAGAGAAAAT+GGG 0.526704 8_1:+82052358 Msa1219250:CDS
GTTGGTGTCATCATTCTCAC+TGG 0.529021 8_1:+82050499 Msa1219250:CDS
TGGAGAGGAAACAAGGTGGT+TGG 0.539271 8_1:-82049521 None:intergenic
GGTGGTGGTGATATTGATGT+TGG 0.539487 8_1:-82049541 None:intergenic
AACCGCAATTCGGGTTCTCA+AGG 0.543466 8_1:+82052792 Msa1219250:CDS
TGTAGGATGTGGATAAGATA+AGG 0.550338 8_1:-82049354 None:intergenic
AGAAACAATCAAATGGTGTA+GGG 0.550444 8_1:+82052750 Msa1219250:CDS
AAGGTTGGGAGCTTTGATGC+TGG 0.551127 8_1:+82052165 Msa1219250:intron
CAGGTTGCAGGGTATGCTGT+TGG 0.551508 8_1:+82051940 Msa1219250:CDS
CAGGGTATGCTGTTGGAGGA+GGG 0.554607 8_1:+82051947 Msa1219250:CDS
GGCACTGAAGAAGCAAATGA+AGG 0.554741 8_1:+82053025 Msa1219250:CDS
CATCTGGAGTCCTCAAGGCT+TGG 0.556853 8_1:-82051223 None:intergenic
GATAGCATTATCTGCTGCAA+TGG 0.558797 8_1:-82051998 None:intergenic
CCTATAGCTCATTTCTCCAA+TGG 0.563998 8_1:+82049450 Msa1219250:exon
TAACATTAACACAGGTTGCA+GGG 0.569695 8_1:+82051929 Msa1219250:CDS
GTTGCAGGGTATGCTGTTGG+AGG 0.577134 8_1:+82051943 Msa1219250:CDS
GCTAGAGATGATCCCTCTGT+TGG 0.578549 8_1:+82050481 Msa1219250:CDS
ATAACCATCTGGAGTCCTCA+AGG 0.585989 8_1:-82051228 None:intergenic
TTTCCTTCATCATCATCAGA+AGG 0.591701 8_1:-82049649 None:intergenic
AAGGAAATAAGTTGAGGTGG+TGG 0.591859 8_1:-82049556 None:intergenic
ATTGAAGATGATGATGATGA+TGG 0.595058 8_1:-82049407 None:intergenic
GGAACAGATGCGTTCTGTAG+TGG 0.596532 8_1:+82051194 Msa1219250:CDS
GCGAAATGTGGTTTCTCACA+AGG 0.598757 8_1:+82052326 Msa1219250:CDS
ATGATGATGATGGTGGGAGT+GGG 0.599280 8_1:-82049397 None:intergenic
CAAGGCAGCTATTAATGCAG+TGG 0.600034 8_1:+82052810 Msa1219250:CDS
TGTCATCATTCTCACTGGAA+AGG 0.600797 8_1:+82050504 Msa1219250:CDS
TCTAAATTATAGGAAATGGG+TGG 0.603920 8_1:+82052980 Msa1219250:intron
ATCAGCTCCTTAACCGTGTG+AGG 0.604886 8_1:-82050442 None:intergenic
ATTGTCTATGAGAAATCTGT+TGG 0.606756 8_1:+82049685 Msa1219250:CDS
TTCCAAACAACATCATGAGA+AGG 0.606798 8_1:-82049619 None:intergenic
TGCCTTGAGAACCCGAATTG+CGG 0.609132 8_1:-82052794 None:intergenic
GCAGTGGATGACGGGCACGC+TGG 0.611049 8_1:+82052826 Msa1219250:CDS
CACAAGGAAATAAGTTGAGG+TGG 0.624126 8_1:-82049559 None:intergenic
TTATTTGCTAACATTAACAC+AGG 0.624961 8_1:+82051921 Msa1219250:CDS
GTATTAATAGGCCAGAGAGA+AGG 0.626964 8_1:+82050407 Msa1219250:CDS
AGAATGATGACACCAACAGA+GGG 0.629795 8_1:-82050493 None:intergenic
CAAGCCTTGAGGACTCCAGA+TGG 0.630119 8_1:+82051224 Msa1219250:CDS
TCCAAAACCAGTAATTGCAA+TGG 0.632257 8_1:+82051837 Msa1219250:CDS
GAGAATGATGACACCAACAG+AGG 0.638786 8_1:-82050494 None:intergenic
TATGAGAAATCTGTTGGTGA+AGG 0.644857 8_1:+82049691 Msa1219250:CDS
TGACACAAGGAAATAAGTTG+AGG 0.649038 8_1:-82049562 None:intergenic
ACAGATGCGTTCTGTAGTGG+TGG 0.672100 8_1:+82051197 Msa1219250:CDS
TGGTGATATTGATGTTGGAG+AGG 0.678621 8_1:-82049536 None:intergenic
TGTTGGTGAAGGAATTGCCA+AGG 0.682387 8_1:+82049702 Msa1219250:CDS
GCGTCTTCGCTCCATATATG+CGG 0.682881 8_1:-82053053 None:intergenic
GTAACTTGAAGTGTGACACA+AGG 0.684211 8_1:-82049575 None:intergenic
GAACATCACCATGAACACGT+TGG 0.725959 8_1:-82049597 None:intergenic
ATGTTGGAGAGGAAACAAGG+TGG 0.769684 8_1:-82049525 None:intergenic
GTGGTGGTGACCAAGCCTTG+AGG 0.785466 8_1:+82051213 Msa1219250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTGTCTTTAAAATTA+TGG + chr8_1:82051552-82051571 Msa1219250:intron 10.0%
!!! TTAATTTTTGTTATCAATTT+GGG + chr8_1:82053139-82053158 Msa1219250:three_prime_UTR 10.0%
!!! AAATAATCTGAAATTCAATT+TGG + chr8_1:82050127-82050146 Msa1219250:intron 15.0%
!! AACACATATTGATAAATTAT+GGG + chr8_1:82050239-82050258 Msa1219250:intron 15.0%
!! TTAGTTTATATGAATATTTG+CGG - chr8_1:82050299-82050318 None:intergenic 15.0%
!!! TATTCAATTTTGTAAATGTT+CGG + chr8_1:82050370-82050389 Msa1219250:intron 15.0%
!! TTACAAAACAATAAAGTAAA+TGG - chr8_1:82050549-82050568 None:intergenic 15.0%
!! TACAAATGTTAAAATGAAAA+TGG - chr8_1:82052061-82052080 None:intergenic 15.0%
!!! TATCATTATTGAATTTGTTT+TGG + chr8_1:82052859-82052878 Msa1219250:intron 15.0%
!!! AATTCAACATTGATATTTTA+TGG + chr8_1:82053004-82053023 Msa1219250:CDS 15.0%
!! TATTAAACTTAGAAAAATCT+GGG - chr8_1:82053078-82053097 None:intergenic 15.0%
!!! TATAAATGCTTTTGAAATTA+TGG - chr8_1:82053106-82053125 None:intergenic 15.0%
!!! GTTAATTTTTGTTATCAATT+TGG + chr8_1:82053138-82053157 Msa1219250:three_prime_UTR 15.0%
!! ATGACATGTTTATAAATTGT+TGG + chr8_1:82049899-82049918 Msa1219250:intron 20.0%
!!! TATACTTTATTTAATGACGA+GGG - chr8_1:82050088-82050107 None:intergenic 20.0%
!!! ATATACTTTATTTAATGACG+AGG - chr8_1:82050089-82050108 None:intergenic 20.0%
!! GAACACATATTGATAAATTA+TGG + chr8_1:82050238-82050257 Msa1219250:intron 20.0%
!! TAGTAAATATTCATGAAGTA+CGG + chr8_1:82050322-82050341 Msa1219250:intron 20.0%
!! TAAAACAAGAAAAGAAAGAA+GGG - chr8_1:82050352-82050371 None:intergenic 20.0%
!! ATAAAACAAGAAAAGAAAGA+AGG - chr8_1:82050353-82050372 None:intergenic 20.0%
!! TATTCTGATCATGAAAATAT+CGG + chr8_1:82051248-82051267 Msa1219250:CDS 20.0%
!!! ACAATATATCAGTTTTTCAT+TGG - chr8_1:82051541-82051560 None:intergenic 20.0%
!!! ATTTTTCTCATTACAAATCA+TGG - chr8_1:82051719-82051738 None:intergenic 20.0%
!!! AAGCACATTTTTTTATCTTT+TGG - chr8_1:82052277-82052296 None:intergenic 20.0%
!!! TAATTTTAGTTTCTCCTTTA+AGG + chr8_1:82052444-82052463 Msa1219250:intron 20.0%
!! TAGAAAAAGAAACAATCAAA+TGG + chr8_1:82052743-82052762 Msa1219250:CDS 20.0%
!!! GTTGTTTTTCTCTAAATTAT+AGG + chr8_1:82052970-82052989 Msa1219250:intron 20.0%
!! TTTCTCTAAATTATAGGAAA+TGG + chr8_1:82052976-82052995 Msa1219250:intron 20.0%
!! TTCTCTAAATTATAGGAAAT+GGG + chr8_1:82052977-82052996 Msa1219250:intron 20.0%
!! CTATTAAACTTAGAAAAATC+TGG - chr8_1:82053079-82053098 None:intergenic 20.0%
!! TCTATAGAATAAAACTGATT+TGG + chr8_1:82053176-82053195 Msa1219250:three_prime_UTR 20.0%
!!! TTACTTAAGTTTTGTCTTGT+AGG - chr8_1:82049374-82049393 None:intergenic 25.0%
! TCAAATGTGTCAAATCAAAA+TGG - chr8_1:82049820-82049839 None:intergenic 25.0%
!!! ATTTTGATTTGACACATTTG+AGG + chr8_1:82049819-82049838 Msa1219250:intron 25.0%
! ACTTTATAAACTCTTCCAAA+TGG - chr8_1:82049873-82049892 None:intergenic 25.0%
! TTCAAATACAAAGGACTAAT+GGG - chr8_1:82050167-82050186 None:intergenic 25.0%
! ATTCAAATACAAAGGACTAA+TGG - chr8_1:82050168-82050187 None:intergenic 25.0%
!!! GGACTTTTTTGTATCATTTA+GGG + chr8_1:82050207-82050226 Msa1219250:intron 25.0%
! ATTTGCGGTTAAAAATTCTA+AGG - chr8_1:82050284-82050303 None:intergenic 25.0%
! TACTGCAGATTAGTATTAAT+AGG + chr8_1:82050395-82050414 Msa1219250:intron 25.0%
! ATAATGATTGGATTAACAAG+TGG - chr8_1:82050616-82050635 None:intergenic 25.0%
!! ACTAGTTGTATGATAATGAT+TGG - chr8_1:82050628-82050647 None:intergenic 25.0%
!!! TTGTTTTGTTCAAGTGATTT+TGG + chr8_1:82050698-82050717 Msa1219250:intron 25.0%
! TGCTGATAAAATAAAACCAA+TGG - chr8_1:82050729-82050748 None:intergenic 25.0%
!!! TAATGACATATTGATGATGT+AGG + chr8_1:82051172-82051191 Msa1219250:intron 25.0%
!!! AATGACATATTGATGATGTA+GGG + chr8_1:82051173-82051192 Msa1219250:intron 25.0%
! TTCACACAAATAGAAAAATC+TGG - chr8_1:82051316-82051335 None:intergenic 25.0%
! AAAGAGATAACTTGAGTAAT+GGG - chr8_1:82051350-82051369 None:intergenic 25.0%
!!! TATCTCTTTGGTTATTTTTG+AGG + chr8_1:82051361-82051380 Msa1219250:intron 25.0%
! AATTTGAGGACTAAATTAAC+CGG - chr8_1:82051480-82051499 None:intergenic 25.0%
! TCTACTAAATTAGAGAACAT+CGG - chr8_1:82051607-82051626 None:intergenic 25.0%
!! TTATTTGCTAACATTAACAC+AGG + chr8_1:82051921-82051940 Msa1219250:CDS 25.0%
! AATTCCAAACATAACCTTAA+AGG - chr8_1:82052461-82052480 None:intergenic 25.0%
! TTCATTATCATTGTATTGCA+TGG + chr8_1:82052623-82052642 Msa1219250:intron 25.0%
!!! TTTACTGCAATGTTTTGATT+TGG + chr8_1:82052705-82052724 Msa1219250:intron 25.0%
!!! CATTATTGAATTTGTTTTGG+TGG + chr8_1:82052862-82052881 Msa1219250:intron 25.0%
!! AGTTCATGTTAGTTTATTTG+AGG + chr8_1:82053205-82053224 Msa1219250:three_prime_UTR 25.0%
! ATTGAAGATGATGATGATGA+TGG - chr8_1:82049410-82049429 None:intergenic 30.0%
ATCATCATCTTCAATGTCAT+TGG + chr8_1:82049415-82049434 Msa1219250:five_prime_UTR 30.0%
ATTGTCTATGAGAAATCTGT+TGG + chr8_1:82049685-82049704 Msa1219250:CDS 30.0%
ATTATTATTCTCTCCTAGCT+AGG + chr8_1:82049788-82049807 Msa1219250:intron 30.0%
TCAAATACAAAGGACTAATG+GGG - chr8_1:82050166-82050185 None:intergenic 30.0%
ATCCTAGCATTCAAATACAA+AGG - chr8_1:82050176-82050195 None:intergenic 30.0%
!! ATGCTAGGATTTTGATATGA+CGG + chr8_1:82050186-82050205 Msa1219250:intron 30.0%
!!! CGGACTTTTTTGTATCATTT+AGG + chr8_1:82050206-82050225 Msa1219250:intron 30.0%
!! TTATTTTATAGGGCATGTTG+AGG + chr8_1:82050572-82050591 Msa1219250:intron 30.0%
TAAGTCACATGACAAGTTAA+TGG - chr8_1:82050654-82050673 None:intergenic 30.0%
! AGTGATTTTGGATATTCCAT+TGG + chr8_1:82050710-82050729 Msa1219250:intron 30.0%
TCATGAAATGATCAACTTGA+TGG + chr8_1:82050785-82050804 Msa1219250:intron 30.0%
ATCATATGATGCTTTCAGTA+CGG + chr8_1:82050831-82050850 Msa1219250:intron 30.0%
! TCAGTGTTTTCAAAACCATA+CGG + chr8_1:82050861-82050880 Msa1219250:intron 30.0%
ATCCTTAATGCAGAATTGAA+TGG + chr8_1:82051146-82051165 Msa1219250:intron 30.0%
AACCATTCAATTCTGCATTA+AGG - chr8_1:82051151-82051170 None:intergenic 30.0%
CAAAGAGATAACTTGAGTAA+TGG - chr8_1:82051351-82051370 None:intergenic 30.0%
CATTACTCAAGTTATCTCTT+TGG + chr8_1:82051349-82051368 Msa1219250:intron 30.0%
! ATTGGTTTCAACTGATGTTA+GGG - chr8_1:82051523-82051542 None:intergenic 30.0%
AAAATTATGGTGCTTGATTC+TGG + chr8_1:82051565-82051584 Msa1219250:intron 30.0%
! TGAATTGTTTCTCCAATTTG+AGG + chr8_1:82051628-82051647 Msa1219250:intron 30.0%
! GAATTGTTTCTCCAATTTGA+GGG + chr8_1:82051629-82051648 Msa1219250:intron 30.0%
! TCATTCTTTTCTCCTATTAC+AGG + chr8_1:82051798-82051817 Msa1219250:intron 30.0%
ATGTTACAAAAGACGAAAAG+GGG - chr8_1:82052127-82052146 None:intergenic 30.0%
GATGTTACAAAAGACGAAAA+GGG - chr8_1:82052128-82052147 None:intergenic 30.0%
AGATGTTACAAAAGACGAAA+AGG - chr8_1:82052129-82052148 None:intergenic 30.0%
! TCTTGTCTTTGTATCGATAA+AGG + chr8_1:82052146-82052165 Msa1219250:intron 30.0%
! TCTTTGTATCGATAAAGGTT+GGG + chr8_1:82052151-82052170 Msa1219250:intron 30.0%
AAAAATGTGCTTCTCAATAC+AGG + chr8_1:82052285-82052304 Msa1219250:intron 30.0%
AGGAGAAACTAAAATTACAG+TGG - chr8_1:82052441-82052460 None:intergenic 30.0%
!! TTCTCCTTTAAGGTTATGTT+TGG + chr8_1:82052454-82052473 Msa1219250:intron 30.0%
AAGAAACAATCAAATGGTGT+AGG + chr8_1:82052749-82052768 Msa1219250:CDS 30.0%
AGAAACAATCAAATGGTGTA+GGG + chr8_1:82052750-82052769 Msa1219250:CDS 30.0%
TATGCATACATATGCTCTAA+GGG - chr8_1:82052944-82052963 None:intergenic 30.0%
ATATGCATACATATGCTCTA+AGG - chr8_1:82052945-82052964 None:intergenic 30.0%
TCTAAATTATAGGAAATGGG+TGG + chr8_1:82052980-82052999 Msa1219250:intron 30.0%
! ATTTTTCTGTGTGTATCAGT+CGG + chr8_1:82053289-82053308 Msa1219250:three_prime_UTR 30.0%
TGTAGGATGTGGATAAGATA+AGG - chr8_1:82049357-82049376 None:intergenic 35.0%
!! AAGTTTTGTCTTGTAGGATG+TGG - chr8_1:82049368-82049387 None:intergenic 35.0%
!! AAGATGATGATGATGATGGT+GGG - chr8_1:82049406-82049425 None:intergenic 35.0%
!! ATGTCTTTGTTGTTTGCCAT+TGG - chr8_1:82049469-82049488 None:intergenic 35.0%
TGACACAAGGAAATAAGTTG+AGG - chr8_1:82049565-82049584 None:intergenic 35.0%
TTCCTTCTCATGATGTTGTT+TGG + chr8_1:82049617-82049636 Msa1219250:CDS 35.0%
TTCCAAACAACATCATGAGA+AGG - chr8_1:82049622-82049641 None:intergenic 35.0%
TTTCCTTCATCATCATCAGA+AGG - chr8_1:82049652-82049671 None:intergenic 35.0%
! TTCTGATGATGATGAAGGAA+AGG + chr8_1:82049651-82049670 Msa1219250:CDS 35.0%
! TATGAGAAATCTGTTGGTGA+AGG + chr8_1:82049691-82049710 Msa1219250:CDS 35.0%
GAAGCAAAAAGAGAAGAGAA+AGG - chr8_1:82049739-82049758 None:intergenic 35.0%
AAAATGGTCATATCCTAGCT+AGG - chr8_1:82049804-82049823 None:intergenic 35.0%
GTCCTTTGTATTTGAATGCT+AGG + chr8_1:82050171-82050190 Msa1219250:intron 35.0%
TTTCATGACAAGTGACAACA+TGG - chr8_1:82050773-82050792 None:intergenic 35.0%
GATCAAACCATAGTAAAGTC+TGG - chr8_1:82050908-82050927 None:intergenic 35.0%
GTCTTAAGTGACAAACTACA+TGG - chr8_1:82051119-82051138 None:intergenic 35.0%
TCATGATCAGAATAACCATC+TGG - chr8_1:82051242-82051261 None:intergenic 35.0%
!!! TTTTGAGGCATTCGTTTCAA+TGG + chr8_1:82051376-82051395 Msa1219250:intron 35.0%
TTTGTCCGTCAAATTGTGTA+AGG + chr8_1:82051453-82051472 Msa1219250:intron 35.0%
TTGTCCGTCAAATTGTGTAA+GGG + chr8_1:82051454-82051473 Msa1219250:intron 35.0%
TAGTCCTCAAATTCACGAAA+TGG + chr8_1:82051487-82051506 Msa1219250:intron 35.0%
! ATTGCCATTTCGTGAATTTG+AGG - chr8_1:82051494-82051513 None:intergenic 35.0%
TTGGTTTCAACTGATGTTAG+GGG - chr8_1:82051522-82051541 None:intergenic 35.0%
!! CATTGGTTTCAACTGATGTT+AGG - chr8_1:82051524-82051543 None:intergenic 35.0%
!!! TTGCAATTACTGGTTTTGGA+AGG - chr8_1:82051837-82051856 None:intergenic 35.0%
TCCAAAACCAGTAATTGCAA+TGG + chr8_1:82051837-82051856 Msa1219250:CDS 35.0%
!!! ACCATTGCAATTACTGGTTT+TGG - chr8_1:82051841-82051860 None:intergenic 35.0%
GTGCACAAAAAAGTGAGATT+TGG - chr8_1:82051880-82051899 None:intergenic 35.0%
! AAATAATTTGCAGCTGCTGA+AGG - chr8_1:82051907-82051926 None:intergenic 35.0%
TAACATTAACACAGGTTGCA+GGG + chr8_1:82051929-82051948 Msa1219250:CDS 35.0%
! GCAAATTATTGAAGCACCTT+AGG - chr8_1:82052039-82052058 None:intergenic 35.0%
! GTCTTTGTATCGATAAAGGT+TGG + chr8_1:82052150-82052169 Msa1219250:intron 35.0%
AAGTTCTATCATGTCACGTT+TGG + chr8_1:82052194-82052213 Msa1219250:CDS 35.0%
GTTTCTCACAAGGTTCTATA+CGG + chr8_1:82052336-82052355 Msa1219250:CDS 35.0%
!! CTGGTACAACAGTATTGATA+AGG - chr8_1:82052384-82052403 None:intergenic 35.0%
TGAGTGTTCTATGAATGGAA+TGG - chr8_1:82052418-82052437 None:intergenic 35.0%
ATTCGAACGTGAAAAATGGA+AGG - chr8_1:82052491-82052510 None:intergenic 35.0%
AGACATTCGAACGTGAAAAA+TGG - chr8_1:82052495-82052514 None:intergenic 35.0%
TGAAGGAAAAACCGCATATA+TGG + chr8_1:82053042-82053061 Msa1219250:CDS 35.0%
! CATGTTAGTTTATTTGAGGC+TGG + chr8_1:82053209-82053228 Msa1219250:three_prime_UTR 35.0%
!! GAAGATGATGATGATGATGG+TGG - chr8_1:82049407-82049426 None:intergenic 40.0%
CCATTGGAGAAATGAGCTAT+AGG - chr8_1:82049453-82049472 None:intergenic 40.0%
CCTATAGCTCATTTCTCCAA+TGG + chr8_1:82049450-82049469 Msa1219250:exon 40.0%
TTGATGTTGGAGAGGAAACA+AGG - chr8_1:82049531-82049550 None:intergenic 40.0%
TGGTGATATTGATGTTGGAG+AGG - chr8_1:82049539-82049558 None:intergenic 40.0%
! AAGGAAATAAGTTGAGGTGG+TGG - chr8_1:82049559-82049578 None:intergenic 40.0%
! CACAAGGAAATAAGTTGAGG+TGG - chr8_1:82049562-82049581 None:intergenic 40.0%
GTAACTTGAAGTGTGACACA+AGG - chr8_1:82049578-82049597 None:intergenic 40.0%
TCAAGTTACCAACGTGTTCA+TGG + chr8_1:82049589-82049608 Msa1219250:CDS 40.0%
! GTTCCTTCTGATGATGATGA+AGG + chr8_1:82049646-82049665 Msa1219250:CDS 40.0%
AAAGAGAAGAGAAAGGTGGA+AGG - chr8_1:82049732-82049751 None:intergenic 40.0%
GCAAAAAGAGAAGAGAAAGG+TGG - chr8_1:82049736-82049755 None:intergenic 40.0%
TAAGCACTTGTGAGACCATT+TGG + chr8_1:82049855-82049874 Msa1219250:intron 40.0%
ATGACGAGGGACTAAATGTT+TGG - chr8_1:82050075-82050094 None:intergenic 40.0%
GTATTAATAGGCCAGAGAGA+AGG + chr8_1:82050407-82050426 Msa1219250:CDS 40.0%
AGAATGATGACACCAACAGA+GGG - chr8_1:82050496-82050515 None:intergenic 40.0%
TGTCATCATTCTCACTGGAA+AGG + chr8_1:82050504-82050523 Msa1219250:CDS 40.0%
GTAAATGGCAGTAGCAGAAA+AGG - chr8_1:82050534-82050553 None:intergenic 40.0%
TCAAAACCATACGGTTCAAC+CGG + chr8_1:82050870-82050889 Msa1219250:intron 40.0%
! CCATAGTAAAGTCTGGTTCA+AGG - chr8_1:82050901-82050920 None:intergenic 40.0%
CCTTGAACCAGACTTTACTA+TGG + chr8_1:82050898-82050917 Msa1219250:intron 40.0%
GGATTTGAACTGCTTGAACT+TGG - chr8_1:82050941-82050960 None:intergenic 40.0%
CCTGCAAGTCTAACACATTA+AGG - chr8_1:82051277-82051296 None:intergenic 40.0%
CCTTAATGTGTTAGACTTGC+AGG + chr8_1:82051274-82051293 Msa1219250:CDS 40.0%
GGCAATTTAGTCCCTCAAAT+TGG - chr8_1:82051643-82051662 None:intergenic 40.0%
!! CCTTTGACTTGAGACTTGTT+GGG - chr8_1:82051664-82051683 None:intergenic 40.0%
!! TCCTTTGACTTGAGACTTGT+TGG - chr8_1:82051665-82051684 None:intergenic 40.0%
!!! CAATTACTGGTTTTGGAAGG+CGG - chr8_1:82051834-82051853 None:intergenic 40.0%
!! GAGAGTACCATTGCAATTAC+TGG - chr8_1:82051847-82051866 None:intergenic 40.0%
CTAACATTAACACAGGTTGC+AGG + chr8_1:82051928-82051947 Msa1219250:CDS 40.0%
! AGGAGGGCATATATTGCATA+TGG + chr8_1:82051963-82051982 Msa1219250:CDS 40.0%
GATAGCATTATCTGCTGCAA+TGG - chr8_1:82052001-82052020 None:intergenic 40.0%
GCAGCAGATAATGCTATCTT+TGG + chr8_1:82052003-82052022 Msa1219250:CDS 40.0%
AATGCTATCTTTGGCCAAAC+TGG + chr8_1:82052012-82052031 Msa1219250:CDS 40.0%
TACAAAAGACGAAAAGGGGA+TGG - chr8_1:82052123-82052142 None:intergenic 40.0%
ATGTGCTTCTCAATACAGGT+AGG + chr8_1:82052289-82052308 Msa1219250:intron 40.0%
!!! CACATTTCGCGTGCTTTTTT+AGG - chr8_1:82052316-82052335 None:intergenic 40.0%
! CTAAAAAAGCACGCGAAATG+TGG + chr8_1:82052314-82052333 Msa1219250:CDS 40.0%
GCTGTTGAAGCAGAGAAAAT+GGG + chr8_1:82052358-82052377 Msa1219250:CDS 40.0%
TGGAATGGAAAGAAGCTTAC+TGG - chr8_1:82052403-82052422 None:intergenic 40.0%
AGTGGTGAGTGTTCTATGAA+TGG - chr8_1:82052423-82052442 None:intergenic 40.0%
GCTATTAATGCAGTGGATGA+CGG + chr8_1:82052817-82052836 Msa1219250:CDS 40.0%
CTATTAATGCAGTGGATGAC+GGG + chr8_1:82052818-82052837 Msa1219250:CDS 40.0%
!! CATACATATGCTCTAAGGGA+AGG - chr8_1:82052940-82052959 None:intergenic 40.0%
!! ATGATGATGATGGTGGGAGT+GGG - chr8_1:82049400-82049419 None:intergenic 45.0%
ATGTTGGAGAGGAAACAAGG+TGG - chr8_1:82049528-82049547 None:intergenic 45.0%
! GGTGGTGGTGATATTGATGT+TGG - chr8_1:82049544-82049563 None:intergenic 45.0%
GAACATCACCATGAACACGT+TGG - chr8_1:82049600-82049619 None:intergenic 45.0%
! TGTTGGTGAAGGAATTGCCA+AGG + chr8_1:82049702-82049721 Msa1219250:CDS 45.0%
!! CGAAAAGCATTCCTTCTCTC+TGG - chr8_1:82050421-82050440 None:intergenic 45.0%
! GAATGCTTTTCGACCTCACA+CGG + chr8_1:82050429-82050448 Msa1219250:CDS 45.0%
! TTTTCGACCTCACACGGTTA+AGG + chr8_1:82050435-82050454 Msa1219250:CDS 45.0%
GAGAATGATGACACCAACAG+AGG - chr8_1:82050497-82050516 None:intergenic 45.0%
!! GTTGGTGTCATCATTCTCAC+TGG + chr8_1:82050499-82050518 Msa1219250:CDS 45.0%
! AGTCTGGTTCAAGGTTCAAC+CGG - chr8_1:82050892-82050911 None:intergenic 45.0%
GCTTGAACTTGGACGAAACT+GGG - chr8_1:82050930-82050949 None:intergenic 45.0%
TGCTTGAACTTGGACGAAAC+TGG - chr8_1:82050931-82050950 None:intergenic 45.0%
! ATAACCATCTGGAGTCCTCA+AGG - chr8_1:82051231-82051250 None:intergenic 45.0%
CCCAACAAGTCTCAAGTCAA+AGG + chr8_1:82051661-82051680 Msa1219250:intron 45.0%
! CTATCATGTCACGTTTGGTG+AGG + chr8_1:82052199-82052218 Msa1219250:intron 45.0%
GCGAAATGTGGTTTCTCACA+AGG + chr8_1:82052326-82052345 Msa1219250:CDS 45.0%
GGCTGTTGAAGCAGAGAAAA+TGG + chr8_1:82052357-82052376 Msa1219250:CDS 45.0%
GAAATAGCCCAACCGCAATT+CGG + chr8_1:82052782-82052801 Msa1219250:CDS 45.0%
AAATAGCCCAACCGCAATTC+GGG + chr8_1:82052783-82052802 Msa1219250:CDS 45.0%
CAAGGCAGCTATTAATGCAG+TGG + chr8_1:82052810-82052829 Msa1219250:CDS 45.0%
! GGCACTGAAGAAGCAAATGA+AGG + chr8_1:82053025-82053044 Msa1219250:CDS 45.0%
!!! TTTTGTAAAATTTATTTTAT+AGG + chr8_1:82050561-82050580 Msa1219250:intron 5.0%
!!! TTTGTAAAATTTATTTTATA+GGG + chr8_1:82050562-82050581 Msa1219250:intron 5.0%
!! GATGATGATGATGGTGGGAG+TGG - chr8_1:82049401-82049420 None:intergenic 50.0%
TGGAGAGGAAACAAGGTGGT+TGG - chr8_1:82049524-82049543 None:intergenic 50.0%
GAAAGGTGGAAGGACAACCT+TGG - chr8_1:82049722-82049741 None:intergenic 50.0%
ATCAGCTCCTTAACCGTGTG+AGG - chr8_1:82050445-82050464 None:intergenic 50.0%
GCTAGAGATGATCCCTCTGT+TGG + chr8_1:82050481-82050500 Msa1219250:CDS 50.0%
GGGCATGTTGAGGCAAGAAA+TGG + chr8_1:82050582-82050601 Msa1219250:intron 50.0%
GTTCAACCGGTTGAACCGTA+TGG - chr8_1:82050879-82050898 None:intergenic 50.0%
AATCCGTTGACGTGACTCAG+AGG + chr8_1:82050956-82050975 Msa1219250:intron 50.0%
AGACCTCTGAGTCACGTCAA+CGG - chr8_1:82050962-82050981 None:intergenic 50.0%
GGAACAGATGCGTTCTGTAG+TGG + chr8_1:82051194-82051213 Msa1219250:CDS 50.0%
ACAGATGCGTTCTGTAGTGG+TGG + chr8_1:82051197-82051216 Msa1219250:CDS 50.0%
CCGGCCCTTACACAATTTGA+CGG - chr8_1:82051461-82051480 None:intergenic 50.0%
CCGTCAAATTGTGTAAGGGC+CGG + chr8_1:82051458-82051477 Msa1219250:intron 50.0%
GGCGAATCTGCACCTGTAAT+AGG - chr8_1:82051813-82051832 None:intergenic 50.0%
CTTTGGCCAAACTGGTCCTA+AGG + chr8_1:82052020-82052039 Msa1219250:CDS 50.0%
! GAAGCACCTTAGGACCAGTT+TGG - chr8_1:82052029-82052048 None:intergenic 50.0%
! AAGGTTGGGAGCTTTGATGC+TGG + chr8_1:82052165-82052184 Msa1219250:intron 50.0%
! GGGAGCTTTGATGCTGGTTA+TGG + chr8_1:82052171-82052190 Msa1219250:CDS 50.0%
TGAGAACCCGAATTGCGGTT+GGG - chr8_1:82052792-82052811 None:intergenic 50.0%
TTGAGAACCCGAATTGCGGT+TGG - chr8_1:82052793-82052812 None:intergenic 50.0%
! AACCGCAATTCGGGTTCTCA+AGG + chr8_1:82052792-82052811 Msa1219250:CDS 50.0%
TGCCTTGAGAACCCGAATTG+CGG - chr8_1:82052797-82052816 None:intergenic 50.0%
GCGTCTTCGCTCCATATATG+CGG - chr8_1:82053056-82053075 None:intergenic 50.0%
! CATCTGGAGTCCTCAAGGCT+TGG - chr8_1:82051226-82051245 None:intergenic 55.0%
CAAGCCTTGAGGACTCCAGA+TGG + chr8_1:82051224-82051243 Msa1219250:CDS 55.0%
CAGGTTGCAGGGTATGCTGT+TGG + chr8_1:82051940-82051959 Msa1219250:CDS 55.0%
GTTGCAGGGTATGCTGTTGG+AGG + chr8_1:82051943-82051962 Msa1219250:CDS 55.0%
CAGGGTATGCTGTTGGAGGA+GGG + chr8_1:82051947-82051966 Msa1219250:CDS 55.0%
! GTGGTGGTGACCAAGCCTTG+AGG + chr8_1:82051213-82051232 Msa1219250:CDS 60.0%
GCAGGGTATGCTGTTGGAGG+AGG + chr8_1:82051946-82051965 Msa1219250:CDS 60.0%
! TGACGGGCACGCTGGACTTC+AGG + chr8_1:82052834-82052853 Msa1219250:CDS 65.0%
!! GCAGTGGATGACGGGCACGC+TGG + chr8_1:82052826-82052845 Msa1219250:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 82049343 82053332 82049343 ID=Msa1219250;Name=Msa1219250
chr8_1 mRNA 82049343 82053332 82049343 ID=Msa1219250-mRNA-1;Parent=Msa1219250;Name=Msa1219250-mRNA-1;_AED=0.11;_eAED=0.11;_QI=126|1|0.87|1|1|1|8|224|361
chr8_1 exon 82049343 82049723 82049343 ID=Msa1219250-mRNA-1:exon:29077;Parent=Msa1219250-mRNA-1
chr8_1 exon 82050403 82050525 82050403 ID=Msa1219250-mRNA-1:exon:29078;Parent=Msa1219250-mRNA-1
chr8_1 exon 82051194 82051295 82051194 ID=Msa1219250-mRNA-1:exon:29079;Parent=Msa1219250-mRNA-1
chr8_1 exon 82051820 82052041 82051820 ID=Msa1219250-mRNA-1:exon:29080;Parent=Msa1219250-mRNA-1
chr8_1 exon 82052168 82052215 82052168 ID=Msa1219250-mRNA-1:exon:29081;Parent=Msa1219250-mRNA-1
chr8_1 exon 82052307 82052402 82052307 ID=Msa1219250-mRNA-1:exon:29082;Parent=Msa1219250-mRNA-1
chr8_1 exon 82052733 82052855 82052733 ID=Msa1219250-mRNA-1:exon:29083;Parent=Msa1219250-mRNA-1
chr8_1 exon 82052992 82053332 82052992 ID=Msa1219250-mRNA-1:exon:29084;Parent=Msa1219250-mRNA-1
chr8_1 five_prime_UTR 82049343 82049468 82049343 ID=Msa1219250-mRNA-1:five_prime_utr;Parent=Msa1219250-mRNA-1
chr8_1 CDS 82049469 82049723 82049469 ID=Msa1219250-mRNA-1:cds;Parent=Msa1219250-mRNA-1
chr8_1 CDS 82050403 82050525 82050403 ID=Msa1219250-mRNA-1:cds;Parent=Msa1219250-mRNA-1
chr8_1 CDS 82051194 82051295 82051194 ID=Msa1219250-mRNA-1:cds;Parent=Msa1219250-mRNA-1
chr8_1 CDS 82051820 82052041 82051820 ID=Msa1219250-mRNA-1:cds;Parent=Msa1219250-mRNA-1
chr8_1 CDS 82052168 82052215 82052168 ID=Msa1219250-mRNA-1:cds;Parent=Msa1219250-mRNA-1
chr8_1 CDS 82052307 82052402 82052307 ID=Msa1219250-mRNA-1:cds;Parent=Msa1219250-mRNA-1
chr8_1 CDS 82052733 82052855 82052733 ID=Msa1219250-mRNA-1:cds;Parent=Msa1219250-mRNA-1
chr8_1 CDS 82052992 82053108 82052992 ID=Msa1219250-mRNA-1:cds;Parent=Msa1219250-mRNA-1
chr8_1 three_prime_UTR 82053109 82053332 82053109 ID=Msa1219250-mRNA-1:three_prime_utr;Parent=Msa1219250-mRNA-1
Gene Sequence

>Msa1219250

ATGGCAAACAACAAAGACATTGAAACAGTGATCAGAAGAGTCACTTCTGTAACCAACCACCTTGTTTCCTCTCCAACATCAATATCACCACCACCTCAACTTATTTCCTTGTGTCACACTTCAAGTTACCAACGTGTTCATGGTGATGTTCCTTCTCATGATGTTGTTTGGAAGCTTGTTCCTTCTGATGATGATGAAGGAAAGGTTTTCACTGACATTGTCTATGAGAAATCTGTTGGTGAAGGAATTGCCAAGATTAGTATTAATAGGCCAGAGAGAAGGAATGCTTTTCGACCTCACACGGTTAAGGAGCTGATTCGTGCTTTCAATGATGCTAGAGATGATCCCTCTGTTGGTGTCATCATTCTCACTGGAAAGGGAACAGATGCGTTCTGTAGTGGTGGTGACCAAGCCTTGAGGACTCCAGATGGTTATTCTGATCATGAAAATATCGGTCGCCTTAATGTGTTAGACTTGCAGGTGCAGATTCGCCGCCTTCCAAAACCAGTAATTGCAATGGTACTCTCACTGTTTACTCCAAATCTCACTTTTTTGTGCACAAAGCCTTCAGCAGCTGCAAATTATTTGCTAACATTAACACAGGTTGCAGGGTATGCTGTTGGAGGAGGGCATATATTGCATATGGTTTGTGATCTAACCATTGCAGCAGATAATGCTATCTTTGGCCAAACTGGTCCTAAGGTTGGGAGCTTTGATGCTGGTTATGGAAGTTCTATCATGTCACGTTTGGTAGGTCCTAAAAAAGCACGCGAAATGTGGTTTCTCACAAGGTTCTATACGGCTGTTGAAGCAGAGAAAATGGGCCTTATCAATACTGTTGTACCACTAGAGAATTTAGAAAAAGAAACAATCAAATGGTGTAGGGAGATACTCAGAAATAGCCCAACCGCAATTCGGGTTCTCAAGGCAGCTATTAATGCAGTGGATGACGGGCACGCTGGACTTCAGGAAATGGGTGGAAATTCAACATTGATATTTTATGGCACTGAAGAAGCAAATGAAGGAAAAACCGCATATATGGAGCGAAGACGCCCAGATTTTTCTAAGTTTAATAGAAGACCATAA

Protein sequence

>Msa1219250

MANNKDIETVIRRVTSVTNHLVSSPTSISPPPQLISLCHTSSYQRVHGDVPSHDVVWKLVPSDDDEGKVFTDIVYEKSVGEGIAKISINRPERRNAFRPHTVKELIRAFNDARDDPSVGVIILTGKGTDAFCSGGDQALRTPDGYSDHENIGRLNVLDLQVQIRRLPKPVIAMVLSLFTPNLTFLCTKPSAAANYLLTLTQVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYTAVEAEKMGLINTVVPLENLEKETIKWCREILRNSPTAIRVLKAAINAVDDGHAGLQEMGGNSTLIFYGTEEANEGKTAYMERRRPDFSKFNRRP*