AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0717510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717510 MtrunA17_Chr5g0405451 94.144 444 20 3 1 443 1 439 0.0 807
Msa0717510 MtrunA17_Chr5g0406201 73.319 476 73 7 8 438 6 472 0.0 639
Msa0717510 MtrunA17_Chr2g0303671 46.154 182 97 1 249 429 123 304 8.58e-52 176
Msa0717510 MtrunA17_Chr5g0418551 33.824 136 90 0 274 409 91 226 2.67e-17 81.3
Msa0717510 MtrunA17_Chr5g0418551 33.088 136 88 1 277 409 58 193 1.06e-15 76.6
Msa0717510 MtrunA17_Chr5g0409271 31.387 137 93 1 277 412 15 151 3.25e-14 72.4
Msa0717510 MtrunA17_Chr4g0049351 29.240 171 113 3 249 418 40 203 3.62e-12 68.2
Msa0717510 MtrunA17_Chr6g0461061 29.825 171 118 2 258 427 195 364 7.90e-12 67.4
Msa0717510 MtrunA17_Chr4g0063141 33.088 136 88 2 277 411 555 688 9.40e-12 67.4
Msa0717510 MtrunA17_Chr7g0221441 38.095 84 52 0 338 421 739 822 1.04e-11 67.0
Msa0717510 MtrunA17_Chr5g0434371 35.714 154 93 2 276 429 591 738 1.26e-11 67.0
Msa0717510 MtrunA17_Chr7g0274241 27.632 152 108 2 265 416 114 263 3.20e-11 65.1
Msa0717510 MtrunA17_Chr3g0127131 33.000 100 65 1 315 412 244 343 4.05e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717510 AT5G66055.1 52.482 423 189 5 23 437 7 425 1.70e-151 437
Msa0717510 AT5G66055.2 49.300 357 170 4 23 372 7 359 8.07e-115 341
Msa0717510 AT5G40160.1 47.802 182 94 1 249 429 127 308 1.45e-52 179
Msa0717510 AT5G40160.2 47.436 156 81 1 249 403 127 282 1.54e-43 155
Msa0717510 AT4G27780.1 40.506 79 47 0 334 412 261 339 1.01e-12 69.7
Msa0717510 AT2G25600.1 32.857 140 92 1 277 416 581 718 1.03e-12 70.9
Msa0717510 AT5G53470.1 32.673 101 66 1 314 412 224 324 1.16e-11 66.2
Msa0717510 AT2G03430.1 29.710 138 97 0 272 409 82 219 1.33e-11 64.7
Msa0717510 AT2G03430.1 29.341 167 112 2 246 409 23 186 4.72e-11 63.2
Msa0717510 AT4G19150.1 26.087 161 114 2 277 436 20 176 2.32e-11 64.3
Msa0717510 AT2G14255.1 31.333 150 100 2 265 411 83 232 2.48e-11 66.2
Msa0717510 AT5G13300.1 33.663 101 65 1 328 428 718 816 3.43e-11 65.9

Find 92 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTATTTGTAGGATAAA+TGG 0.153410 5_1:+11314224 Msa0717510:intron
TTCTTCTTTGAAATTGGTTT+TGG 0.193195 5_1:-11312351 None:intergenic
AATCCTAGATGGGCTGTTTA+TGG 0.219355 5_1:+11312693 Msa0717510:CDS
CAGTTGAAGCCTTTGGTTCT+TGG 0.229120 5_1:+11312582 Msa0717510:CDS
AGAATCTTGTTCCTGATAAA+TGG 0.230329 5_1:+11312397 Msa0717510:CDS
GTTGATTCCTTTGAGGGATA+TGG 0.236009 5_1:+11312518 Msa0717510:CDS
TGAACTTCTTTCCATTTATC+AGG 0.246691 5_1:-11312408 None:intergenic
GCTCTTTACAAAGCGGTAAT+TGG 0.258042 5_1:+11314435 Msa0717510:CDS
GTGAAGCTTCTGCTGATTAA+AGG 0.274738 5_1:+11315480 Msa0717510:CDS
GGCTTATAAAGAAGCTAAAT+TGG 0.277637 5_1:+11312557 Msa0717510:CDS
CATATGGAAACTTTAGCTTT+AGG 0.289789 5_1:+11316872 Msa0717510:three_prime_UTR
TATGGATTTGAATGAGTATA+AGG 0.293852 5_1:+11312536 Msa0717510:CDS
GACTCTGCTGCTATGAAAAC+TGG 0.356814 5_1:+11312762 Msa0717510:CDS
TCTTCTTATCCCCATCTGTC+TGG 0.368058 5_1:-11316760 None:intergenic
ATTGGCTCAGTTGAAGCCTT+TGG 0.368198 5_1:+11312575 Msa0717510:CDS
TGATGTTGATATTAATGTTA+TGG 0.368619 5_1:+11314309 Msa0717510:CDS
CAATGTGGATATAAATCTTC+AGG 0.373575 5_1:+11315310 Msa0717510:CDS
AAGAAGAGTGTGTGGGGTTG+TGG 0.374765 5_1:-11312111 None:intergenic
TGATATTAATGTTATGGATA+AGG 0.387981 5_1:+11314315 Msa0717510:CDS
ATCCTAGATGGGCTGTTTAT+GGG 0.393025 5_1:+11312694 Msa0717510:CDS
TCTCAAGAGACAGTTGGTTA+TGG 0.396572 5_1:-11314469 None:intergenic
TTCAATCCATAACTAGTTAC+GGG 0.396857 5_1:-11312029 None:intergenic
TAGTGCCTAGGAATCCTAGA+TGG 0.397952 5_1:+11312682 Msa0717510:CDS
ACAAGAGTACTTTAATTGTT+CGG 0.397986 5_1:-11315283 None:intergenic
ATCTGTCTGGAGCGTCTATA+AGG 0.403987 5_1:-11316747 None:intergenic
CTCACATTATCTTGCACAAA+CGG 0.408366 5_1:-11314504 None:intergenic
ATTCAATCCATAACTAGTTA+CGG 0.417324 5_1:-11312030 None:intergenic
AAATGTATTCAAAATATGAT+AGG 0.418620 5_1:+11316919 Msa0717510:three_prime_UTR
TCAAAACCCGTAACTAGTTA+TGG 0.418744 5_1:+11312023 Msa0717510:five_prime_UTR
GAAGCCTTTGGTTCTTGGTA+AGG 0.419470 5_1:+11312587 Msa0717510:CDS
AGATGGGCTGTTTATGGGAG+AGG 0.423749 5_1:+11312699 Msa0717510:CDS
GAAGAAGGTGGGTTGAGTGA+TGG 0.439717 5_1:+11312642 Msa0717510:CDS
AAGAGGGTTGATTCCTTTGA+GGG 0.442733 5_1:+11312512 Msa0717510:CDS
CGGAGACTGTCTTGTCTTCG+AGG 0.443191 5_1:+11312266 Msa0717510:CDS
AAGAAGGTGGGTTGAGTGAT+GGG 0.449225 5_1:+11312643 Msa0717510:CDS
TTGCTGAGTCTTAGGATGGC+TGG 0.449489 5_1:+11315415 Msa0717510:intron
AAAGAGGGTTGATTCCTTTG+AGG 0.450936 5_1:+11312511 Msa0717510:CDS
ATGATTTGGACTGACAAGTA+AGG 0.452938 5_1:+11316797 Msa0717510:three_prime_UTR
GTCGTCCTAGGTTGTTTACC+AGG 0.463875 5_1:+11313871 Msa0717510:CDS
ACGAGGTTGTTGTCGGAAGT+TGG 0.464298 5_1:-11312315 None:intergenic
GCAAGCAGCTCTTCAGCATA+TGG 0.476206 5_1:+11316856 Msa0717510:three_prime_UTR
AAAGTTATGAAGAAGAAAAG+AGG 0.482187 5_1:+11312495 Msa0717510:CDS
ACAGCCCATCTAGGATTCCT+AGG 0.499470 5_1:-11312687 None:intergenic
TTTATCAGGAACAAGATTCT+CGG 0.500203 5_1:-11312394 None:intergenic
GTTGTTTACGAGGTTGTTGT+CGG 0.500244 5_1:-11312322 None:intergenic
CTCGACCTTTGCCTTTACTC+TGG 0.500612 5_1:+11316681 Msa0717510:CDS
CTCCCATAAACAGCCCATCT+AGG 0.507590 5_1:-11312696 None:intergenic
GTTGTTTACCAGGGAGGAGA+GGG 0.513400 5_1:+11313881 Msa0717510:CDS
CTTCGTAGTTGTTGTCATGT+TGG 0.515970 5_1:-11312233 None:intergenic
GATGATGAAGAAGAAGAAGA+AGG 0.516113 5_1:+11312627 Msa0717510:CDS
AAGTTATGAAGAAGAAAAGA+GGG 0.517219 5_1:+11312496 Msa0717510:CDS
GGTGGGTTGAGTGATGGGTC+TGG 0.520143 5_1:+11312648 Msa0717510:CDS
GAAGTAGCAACTGACAAGTC+TGG 0.525281 5_1:-11313924 None:intergenic
TATAGACGCTCCAGACAGAT+GGG 0.526314 5_1:+11316750 Msa0717510:CDS
ATGGAGAGAAGAAGAGTGTG+TGG 0.526930 5_1:-11312119 None:intergenic
TGGAGAGAAGAAGAGTGTGT+GGG 0.527588 5_1:-11312118 None:intergenic
GACTGTCTTGTCTTCGAGGA+AGG 0.528284 5_1:+11312270 Msa0717510:CDS
TGTTTATGGGAGAGGTTTCG+AGG 0.529560 5_1:+11312707 Msa0717510:CDS
CGAGTTTCTCAAGAGACAGT+TGG 0.545416 5_1:-11314475 None:intergenic
CAACAAATCCCTCTCCTCCC+TGG 0.550164 5_1:-11313889 None:intergenic
GTCTGAACAGCAAGATGTAA+TGG 0.552014 5_1:-11315441 None:intergenic
TTATAGACGCTCCAGACAGA+TGG 0.558402 5_1:+11316749 Msa0717510:CDS
TGATTTGGACTGACAAGTAA+GGG 0.568870 5_1:+11316798 Msa0717510:three_prime_UTR
GGTGTGGAAGAAGAAGAAGA+AGG 0.570732 5_1:-11312144 None:intergenic
GAGTAAAGGCAAAGGTCGAG+TGG 0.584489 5_1:-11316678 None:intergenic
TTCAAATCCATATCCCTCAA+AGG 0.588549 5_1:-11312525 None:intergenic
TTGTACAGCATAATGAATCA+AGG 0.591443 5_1:-11315249 None:intergenic
AGTGCCTAGGAATCCTAGAT+GGG 0.592539 5_1:+11312683 Msa0717510:CDS
AGATTGAAACTTGCGAGGTG+TGG 0.593440 5_1:-11312160 None:intergenic
AATTACCGCTTTGTAAAGAG+CGG 0.596818 5_1:-11314433 None:intergenic
GGTTGTTTACCAGGGAGGAG+AGG 0.600499 5_1:+11313880 Msa0717510:CDS
TCGTCCTAGGTTGTTTACCA+GGG 0.600545 5_1:+11313872 Msa0717510:CDS
AGTACTCTTGTTGTACAATG+TGG 0.602365 5_1:+11315295 Msa0717510:CDS
TGATGGGTCTGGTGATGAGA+GGG 0.602994 5_1:+11312659 Msa0717510:CDS
GTGATGAGAGGGTAGTGCCT+AGG 0.605695 5_1:+11312670 Msa0717510:CDS
GAAACTTTAGCTTTAGGACA+AGG 0.609493 5_1:+11316878 Msa0717510:three_prime_UTR
TAAACATAACGAAGAAAGAA+CGG 0.615305 5_1:+11312439 Msa0717510:CDS
TGAAAAGATTGAAACTTGCG+AGG 0.619228 5_1:-11312165 None:intergenic
CTTGCAGCAAAAGTGTGCAA+AGG 0.619949 5_1:-11314250 None:intergenic
GTGATGGGTCTGGTGATGAG+AGG 0.626193 5_1:+11312658 Msa0717510:CDS
CAACTGTCTCTTGAGAAACT+CGG 0.635724 5_1:+11314476 Msa0717510:CDS
TCCTAGGTTGTTTACCAGGG+AGG 0.641807 5_1:+11313875 Msa0717510:CDS
GGAGAGAAGAAGAGTGTGTG+GGG 0.642297 5_1:-11312117 None:intergenic
AACTACGAAGAACACATCAT+CGG 0.651971 5_1:+11312246 Msa0717510:CDS
TCCTCCCTGGTAAACAACCT+AGG 0.653160 5_1:-11313876 None:intergenic
AAAACCTTACCAAGAACCAA+AGG 0.660134 5_1:-11312591 None:intergenic
TTGTGGATTATGAACAAGTG+TGG 0.665151 5_1:-11312094 None:intergenic
TTTGACCAGAGTAAAGGCAA+AGG 0.667685 5_1:-11316686 None:intergenic
TTTGGCCGCTCTTTACAAAG+CGG 0.690793 5_1:+11314428 Msa0717510:CDS
ATAGACGCTCCAGACAGATG+GGG 0.692464 5_1:+11316751 Msa0717510:CDS
TCTGCTGCTATGAAAACTGG+AGG 0.737144 5_1:+11312765 Msa0717510:CDS
TACAGCATAATGAATCAAGG+TGG 0.739803 5_1:-11315246 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG - chr5_1:11315092-11315111 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr5_1:11315093-11315112 None:intergenic 10.0%
!! AATAATTTATAAAATAGAAG+CGG + chr5_1:11315849-11315868 Msa0717510:intron 10.0%
!!! AATTTTTTCATAAAAAAAGA+AGG + chr5_1:11316949-11316968 Msa0717510:three_prime_UTR 10.0%
!! AGTATATGTTAATAGATTAA+GGG - chr5_1:11314913-11314932 None:intergenic 15.0%
!! AATTAGAGTTATATTGTATT+GGG - chr5_1:11315027-11315046 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG - chr5_1:11315028-11315047 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr5_1:11315091-11315110 None:intergenic 15.0%
!! TTACATTGATAGATTAATAT+AGG - chr5_1:11315549-11315568 None:intergenic 15.0%
!! ATAATTTATAAAATAGAAGC+GGG + chr5_1:11315850-11315869 Msa0717510:intron 15.0%
!!! AAATAAAACTTTTGATGATT+TGG + chr5_1:11316783-11316802 Msa0717510:exon 15.0%
!! AAATGTATTCAAAATATGAT+AGG + chr5_1:11316919-11316938 Msa0717510:three_prime_UTR 15.0%
!! TAAAAATGTGATTTCTAATT+TGG + chr5_1:11316996-11317015 Msa0717510:three_prime_UTR 15.0%
!!! TTCTTTTTCTTCTTTGAAAT+TGG - chr5_1:11312360-11312379 None:intergenic 20.0%
!!! TTTGTATTTACAATCTGTTT+TGG + chr5_1:11312791-11312810 Msa0717510:intron 20.0%
!! AAAACTAAAAGTTGTTACAT+AGG - chr5_1:11312853-11312872 None:intergenic 20.0%
!!! TATGGACATTTTGAAAAATA+AGG + chr5_1:11313319-11313338 Msa0717510:intron 20.0%
!!! ATGGACATTTTGAAAAATAA+GGG + chr5_1:11313320-11313339 Msa0717510:intron 20.0%
!!! TGTTGGTTAAAACAAATTTA+TGG + chr5_1:11313375-11313394 Msa0717510:intron 20.0%
!!! TTATATCTCAACTTTTTCAT+AGG - chr5_1:11313453-11313472 None:intergenic 20.0%
!! ATGAAAAAGTTGAGATATAA+AGG + chr5_1:11313453-11313472 Msa0717510:intron 20.0%
!! TAACAGTACAAAATATAATG+AGG - chr5_1:11314001-11314020 None:intergenic 20.0%
!!! ATTATATTTTGTACTGTTAC+CGG + chr5_1:11314002-11314021 Msa0717510:intron 20.0%
!!! CTCTATATTTATGTTTTCAA+TGG + chr5_1:11314195-11314214 Msa0717510:intron 20.0%
!! TGATGTTGATATTAATGTTA+TGG + chr5_1:11314309-11314328 Msa0717510:CDS 20.0%
!! TGATATTAATGTTATGGATA+AGG + chr5_1:11314315-11314334 Msa0717510:CDS 20.0%
!! CATGAATACTAATTTATACA+CGG + chr5_1:11314340-11314359 Msa0717510:intron 20.0%
!! AAACACAATAGTTTAAATAG+AGG - chr5_1:11314386-11314405 None:intergenic 20.0%
!!! TGTTTTGTTTTACTTTTTCA+AGG + chr5_1:11314401-11314420 Msa0717510:intron 20.0%
!! GAGTATATGTTAATAGATTA+AGG - chr5_1:11314914-11314933 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr5_1:11314958-11314977 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr5_1:11315068-11315087 None:intergenic 20.0%
!! TGATCAGAAATTAAAAAACA+AGG + chr5_1:11315506-11315525 Msa0717510:CDS 20.0%
!! AAAAAGGGAAAAAATACAAT+GGG - chr5_1:11315671-11315690 None:intergenic 20.0%
!! AAAAAAGGGAAAAAATACAA+TGG - chr5_1:11315672-11315691 None:intergenic 20.0%
!! AGCCTTTCAAAAAAAAAAAA+AGG + chr5_1:11315741-11315760 Msa0717510:intron 20.0%
!! GCCTTTCAAAAAAAAAAAAA+GGG + chr5_1:11315742-11315761 Msa0717510:intron 20.0%
!!! ACCCTTTTTTTTTTTTTGAA+AGG - chr5_1:11315746-11315765 None:intergenic 20.0%
!! AAAAAAAAAAAAAGGGTCAT+TGG + chr5_1:11315749-11315768 Msa0717510:intron 20.0%
!!! AATTCTTTAGAAAATAGAAG+TGG + chr5_1:11315982-11316001 Msa0717510:intron 20.0%
!!! AAAACTTTCAACTGTTATTT+AGG + chr5_1:11316211-11316230 Msa0717510:intron 20.0%
!! AACTAAATATTCATCAATCA+CGG - chr5_1:11316429-11316448 None:intergenic 20.0%
!!! ATATCATAATATTTTGTCTG+TGG + chr5_1:11316512-11316531 Msa0717510:intron 20.0%
!! AAATATCACTGTAAAAGAAA+TGG - chr5_1:11316617-11316636 None:intergenic 20.0%
! ATTCAATCCATAACTAGTTA+CGG - chr5_1:11312033-11312052 None:intergenic 25.0%
!!! TTCTTCTTTGAAATTGGTTT+TGG - chr5_1:11312354-11312373 None:intergenic 25.0%
! TAAACATAACGAAGAAAGAA+CGG + chr5_1:11312439-11312458 Msa0717510:CDS 25.0%
! AAAGTTATGAAGAAGAAAAG+AGG + chr5_1:11312495-11312514 Msa0717510:CDS 25.0%
! AAGTTATGAAGAAGAAAAGA+GGG + chr5_1:11312496-11312515 Msa0717510:CDS 25.0%
! TATGGATTTGAATGAGTATA+AGG + chr5_1:11312536-11312555 Msa0717510:CDS 25.0%
!!! TATTTTTGTTAATGCTGTTG+AGG + chr5_1:11312817-11312836 Msa0717510:intron 25.0%
!!! TTGGATTTGCTTTTGATTTA+TGG + chr5_1:11313347-11313366 Msa0717510:intron 25.0%
!!! TGGATTTGCTTTTGATTTAT+GGG + chr5_1:11313348-11313367 Msa0717510:intron 25.0%
! GAAATTTGATTGTGATGAAA+TGG + chr5_1:11313718-11313737 Msa0717510:intron 25.0%
!! TGGATCATTTTATTCATTGA+TGG + chr5_1:11313738-11313757 Msa0717510:intron 25.0%
!! TATTCATTGATGGTTAAATC+CGG + chr5_1:11313748-11313767 Msa0717510:intron 25.0%
! TTCTCATTGTTTGCAATATA+TGG + chr5_1:11313798-11313817 Msa0717510:intron 25.0%
! TTACTTCAACATCAAAACAA+AGG - chr5_1:11314050-11314069 None:intergenic 25.0%
!!! TGTTGCATTTTTTTCAATGT+TGG + chr5_1:11314112-11314131 Msa0717510:intron 25.0%
! CTCATTATTTGTAGGATAAA+TGG + chr5_1:11314224-11314243 Msa0717510:intron 25.0%
!!! TACTTTTAGAATCTTTGTTG+CGG + chr5_1:11314284-11314303 Msa0717510:CDS 25.0%
!!! TTGTTTTACTTTTTCAAGGA+TGG + chr5_1:11314405-11314424 Msa0717510:intron 25.0%
! GTAAGAAAATCAACAGATAA+AGG - chr5_1:11314575-11314594 None:intergenic 25.0%
! AATATGCTGAAAACAACTTA+TGG + chr5_1:11314795-11314814 Msa0717510:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr5_1:11314959-11314978 None:intergenic 25.0%
!!! TGAAATGACTCACTTATTTT+GGG - chr5_1:11314980-11314999 None:intergenic 25.0%
!! TTGAAATGACTCACTTATTT+TGG - chr5_1:11314981-11315000 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr5_1:11315069-11315088 None:intergenic 25.0%
!!! ACAAGAGTACTTTAATTGTT+CGG - chr5_1:11315286-11315305 None:intergenic 25.0%
!! TGAATATAGATGCTTTTAAC+TGG + chr5_1:11315598-11315617 Msa0717510:intron 25.0%
!! TGAATATAGGTGCTTTTAAT+GGG + chr5_1:11315874-11315893 Msa0717510:intron 25.0%
!! ACATGTATTCTTTAGAAAAC+AGG + chr5_1:11316046-11316065 Msa0717510:intron 25.0%
! CTAAGTCATTAAAAACCTAT+CGG + chr5_1:11316178-11316197 Msa0717510:intron 25.0%
!!! TTTTTTTTTTACCCAAGCAT+GGG - chr5_1:11316292-11316311 None:intergenic 25.0%
!!! TTTTTTTTTTTACCCAAGCA+TGG - chr5_1:11316293-11316312 None:intergenic 25.0%
TTCAATCCATAACTAGTTAC+GGG - chr5_1:11312032-11312051 None:intergenic 30.0%
!!! TTGGTTTTTTGTTGTTTACG+AGG - chr5_1:11312335-11312354 None:intergenic 30.0%
AAAGAAGAAAAAGAAGACAG+TGG + chr5_1:11312365-11312384 Msa0717510:CDS 30.0%
TTTATCAGGAACAAGATTCT+CGG - chr5_1:11312397-11312416 None:intergenic 30.0%
AGAATCTTGTTCCTGATAAA+TGG + chr5_1:11312397-11312416 Msa0717510:CDS 30.0%
TGAACTTCTTTCCATTTATC+AGG - chr5_1:11312411-11312430 None:intergenic 30.0%
GGCTTATAAAGAAGCTAAAT+TGG + chr5_1:11312557-11312576 Msa0717510:CDS 30.0%
CAAACACATGTATTTACGTT+TGG + chr5_1:11312918-11312937 Msa0717510:intron 30.0%
TGACACAATAATCTATGAAG+CGG - chr5_1:11312993-11313012 None:intergenic 30.0%
TTGTATCGCTCTTATTGTTT+AGG + chr5_1:11313097-11313116 Msa0717510:intron 30.0%
TGTATCGCTCTTATTGTTTA+GGG + chr5_1:11313098-11313117 Msa0717510:intron 30.0%
!! TATGCTTGTTAGACAACTTT+TGG + chr5_1:11313244-11313263 Msa0717510:intron 30.0%
!! GACATTTTGAAAAATAAGGG+TGG + chr5_1:11313323-11313342 Msa0717510:intron 30.0%
TTTGAAAAATAAGGGTGGTT+TGG + chr5_1:11313328-11313347 Msa0717510:intron 30.0%
! TCTCTTCAGATAAGTGTTTT+TGG + chr5_1:11313547-11313566 Msa0717510:intron 30.0%
TTGGAGAAGTTTATCCAAAA+TGG + chr5_1:11313566-11313585 Msa0717510:intron 30.0%
ATCCAAAATGGCTCTTAAAT+TGG + chr5_1:11313578-11313597 Msa0717510:intron 30.0%
TTTGTTTATATTGCCATCCT+AGG - chr5_1:11313698-11313717 None:intergenic 30.0%
! ATTCATTGATGGTTAAATCC+GGG + chr5_1:11313749-11313768 Msa0717510:intron 30.0%
GCATAAAATGAATATCTTCC+CGG - chr5_1:11313770-11313789 None:intergenic 30.0%
! TCTTTCATGCTTTTGTGTAT+AGG + chr5_1:11313849-11313868 Msa0717510:intron 30.0%
!!! ACTAGAGAGTTCTTATTTTC+CGG - chr5_1:11314024-11314043 None:intergenic 30.0%
! TGGAATCATAATAGAAGTGT+AGG + chr5_1:11314132-11314151 Msa0717510:intron 30.0%
! GGAATCATAATAGAAGTGTA+GGG + chr5_1:11314133-11314152 Msa0717510:intron 30.0%
! GAATCATAATAGAAGTGTAG+GGG + chr5_1:11314134-11314153 Msa0717510:intron 30.0%
! ATTCACTTGTTTGTTACCTT+CGG + chr5_1:11314164-11314183 Msa0717510:intron 30.0%
ATATAGAGATTACTTACCGA+AGG - chr5_1:11314183-11314202 None:intergenic 30.0%
GGCTAATACTCATTATTTGT+AGG + chr5_1:11314216-11314235 Msa0717510:intron 30.0%
!!! TTACTTTTTCAAGGATGGTT+TGG + chr5_1:11314410-11314429 Msa0717510:intron 30.0%
TGATAACAATGATGAATTCC+CGG - chr5_1:11314631-11314650 None:intergenic 30.0%
! TAATAGATTAAGGGCATGTT+TGG - chr5_1:11314904-11314923 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr5_1:11315084-11315103 None:intergenic 30.0%
TTATATCCTTAGTTACCTGT+TGG + chr5_1:11315167-11315186 Msa0717510:intron 30.0%
AAGCAAATGCATAGAATATC+AGG - chr5_1:11315196-11315215 None:intergenic 30.0%
TTGTACAGCATAATGAATCA+AGG - chr5_1:11315252-11315271 None:intergenic 30.0%
CAATGTGGATATAAATCTTC+AGG + chr5_1:11315310-11315329 Msa0717510:CDS 30.0%
GAGGTAGAAAAGCTAATTAT+TGG - chr5_1:11315356-11315375 None:intergenic 30.0%
! TGAATTTTGTTCTCAAACAG+TGG - chr5_1:11315394-11315413 None:intergenic 30.0%
! AAATTCATTTGCTGAGTCTT+AGG + chr5_1:11315407-11315426 Msa0717510:intron 30.0%
AAAAACTCGCGGATAAAAAA+GGG - chr5_1:11315686-11315705 None:intergenic 30.0%
AAAAAACTCGCGGATAAAAA+AGG - chr5_1:11315687-11315706 None:intergenic 30.0%
! CTGAATATAGGTGCTTTTAA+TGG + chr5_1:11315873-11315892 Msa0717510:intron 30.0%
TTTCATCTAAATCACCTAAC+TGG - chr5_1:11316102-11316121 None:intergenic 30.0%
AGTTAGGTGATTTAGATGAA+AGG + chr5_1:11316101-11316120 Msa0717510:intron 30.0%
! CGATAGGTTTTTAATGACTT+AGG - chr5_1:11316180-11316199 None:intergenic 30.0%
!! AGGCTTGATTGAATTTGTTT+TGG + chr5_1:11316401-11316420 Msa0717510:intron 30.0%
!! ATTTGTCTTTTGTTTGTCTC+AGG + chr5_1:11316644-11316663 Msa0717510:intron 30.0%
!! CATATGGAAACTTTAGCTTT+AGG + chr5_1:11316872-11316891 Msa0717510:three_prime_UTR 30.0%
TCAAAACCCGTAACTAGTTA+TGG + chr5_1:11312023-11312042 Msa0717510:five_prime_UTR 35.0%
! TTGTGGATTATGAACAAGTG+TGG - chr5_1:11312097-11312116 None:intergenic 35.0%
TGAAAAGATTGAAACTTGCG+AGG - chr5_1:11312168-11312187 None:intergenic 35.0%
! AGAGAATTTTGTGGAAGTTG+CGG - chr5_1:11312203-11312222 None:intergenic 35.0%
! GTGATGAAGAGAGAATTTTG+TGG - chr5_1:11312212-11312231 None:intergenic 35.0%
AACTACGAAGAACACATCAT+CGG + chr5_1:11312246-11312265 Msa0717510:CDS 35.0%
TTGTCGGAAGTTGGAAAAAT+GGG - chr5_1:11312309-11312328 None:intergenic 35.0%
TTCAAATCCATATCCCTCAA+AGG - chr5_1:11312528-11312547 None:intergenic 35.0%
AAAACCTTACCAAGAACCAA+AGG - chr5_1:11312594-11312613 None:intergenic 35.0%
GATGATGAAGAAGAAGAAGA+AGG + chr5_1:11312627-11312646 Msa0717510:CDS 35.0%
ATGAAGAAGAAGAAGAAGGT+GGG + chr5_1:11312631-11312650 Msa0717510:CDS 35.0%
!!! AGTTTTAGATTGAACGTGTC+AGG + chr5_1:11312867-11312886 Msa0717510:intron 35.0%
GCTTCATAGATTATTGTGTC+AGG + chr5_1:11312992-11313011 Msa0717510:intron 35.0%
GTCAGGTGTATGAAATGTAT+TGG + chr5_1:11313009-11313028 Msa0717510:intron 35.0%
CACATACATGTAGTTACCTT+TGG + chr5_1:11313039-11313058 Msa0717510:intron 35.0%
CAAGCACATGTAGTTATGTT+TGG + chr5_1:11313158-11313177 Msa0717510:intron 35.0%
GTAGTGAAAATCAACTTCCT+TGG + chr5_1:11313288-11313307 Msa0717510:intron 35.0%
! TTTGATTTATGGGAGCTTGT+TGG + chr5_1:11313358-11313377 Msa0717510:intron 35.0%
! CACCAATTTAAGAGCCATTT+TGG - chr5_1:11313583-11313602 None:intergenic 35.0%
GTTGTATATTGCCATCCATT+AGG - chr5_1:11313626-11313645 None:intergenic 35.0%
TTCAGTAAGTATTCCATGTC+TGG + chr5_1:11313944-11313963 Msa0717510:intron 35.0%
! TAATAGAAGTGTAGGGGAAA+AGG + chr5_1:11314140-11314159 Msa0717510:intron 35.0%
ACACGGAAGATTATAATGTG+TGG + chr5_1:11314357-11314376 Msa0717510:intron 35.0%
AATTACCGCTTTGTAAAGAG+CGG - chr5_1:11314436-11314455 None:intergenic 35.0%
CTCACATTATCTTGCACAAA+CGG - chr5_1:11314507-11314526 None:intergenic 35.0%
! CTGTTTTCATAAGCTATCCT+GGG + chr5_1:11314762-11314781 Msa0717510:intron 35.0%
AGAAAATGGGTCAGATATTC+CGG - chr5_1:11314945-11314964 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG + chr5_1:11315113-11315132 Msa0717510:intron 35.0%
TCTGTGTGAAAAACCAAACT+GGG + chr5_1:11315114-11315133 Msa0717510:intron 35.0%
TAGAATATCAGGATACCAAC+AGG - chr5_1:11315185-11315204 None:intergenic 35.0%
!! TTGCTTTGTTGTTTATGTGC+TGG + chr5_1:11315210-11315229 Msa0717510:intron 35.0%
TACAGCATAATGAATCAAGG+TGG - chr5_1:11315249-11315268 None:intergenic 35.0%
! AGTACTCTTGTTGTACAATG+TGG + chr5_1:11315295-11315314 Msa0717510:CDS 35.0%
! TTCTACCTCTTACTCTTTTG+TGG + chr5_1:11315367-11315386 Msa0717510:intron 35.0%
ACCTTGTGTGTTAGATAATG+TGG + chr5_1:11315573-11315592 Msa0717510:intron 35.0%
CCTTGTGTGTTAGATAATGT+GGG + chr5_1:11315574-11315593 Msa0717510:intron 35.0%
!! AGATGCTTTTAACTGGTCAT+TGG + chr5_1:11315605-11315624 Msa0717510:intron 35.0%
!! GATGCTTTTAACTGGTCATT+GGG + chr5_1:11315606-11315625 Msa0717510:intron 35.0%
ACAAACATTCATCATGACAC+TGG + chr5_1:11315811-11315830 Msa0717510:intron 35.0%
GGTAAAATATCAGTTGTCAC+TGG + chr5_1:11315902-11315921 Msa0717510:intron 35.0%
TTAAATGTAACCTCGTGTGT+TGG + chr5_1:11316005-11316024 Msa0717510:intron 35.0%
! AATCACCTAACTGGTTCTTA+AGG - chr5_1:11316093-11316112 None:intergenic 35.0%
! GTTTTTCTTCAACAACCGAT+AGG - chr5_1:11316196-11316215 None:intergenic 35.0%
AGCAGTAAGCAGATTAATAC+TGG + chr5_1:11316591-11316610 Msa0717510:intron 35.0%
!! TGACATTTTGACCAGAGTAA+AGG - chr5_1:11316695-11316714 None:intergenic 35.0%
! ATGATTTGGACTGACAAGTA+AGG + chr5_1:11316797-11316816 Msa0717510:three_prime_UTR 35.0%
! TGATTTGGACTGACAAGTAA+GGG + chr5_1:11316798-11316817 Msa0717510:three_prime_UTR 35.0%
!! GAAACTTTAGCTTTAGGACA+AGG + chr5_1:11316878-11316897 Msa0717510:three_prime_UTR 35.0%
GAAGAAGAAGAAGAAGGGAA+TGG - chr5_1:11312141-11312160 None:intergenic 40.0%
GTGTGGAAGAAGAAGAAGAA+GGG - chr5_1:11312146-11312165 None:intergenic 40.0%
CTTCGTAGTTGTTGTCATGT+TGG - chr5_1:11312236-11312255 None:intergenic 40.0%
TGTCGGAAGTTGGAAAAATG+GGG - chr5_1:11312308-11312327 None:intergenic 40.0%
GTTGTCGGAAGTTGGAAAAA+TGG - chr5_1:11312310-11312329 None:intergenic 40.0%
GTTGTTTACGAGGTTGTTGT+CGG - chr5_1:11312325-11312344 None:intergenic 40.0%
! AAAGAGGGTTGATTCCTTTG+AGG + chr5_1:11312511-11312530 Msa0717510:CDS 40.0%
! AAGAGGGTTGATTCCTTTGA+GGG + chr5_1:11312512-11312531 Msa0717510:CDS 40.0%
! GTTGATTCCTTTGAGGGATA+TGG + chr5_1:11312518-11312537 Msa0717510:CDS 40.0%
GATGAAGAAGAAGAAGAAGG+TGG + chr5_1:11312630-11312649 Msa0717510:CDS 40.0%
!! AATCCTAGATGGGCTGTTTA+TGG + chr5_1:11312693-11312712 Msa0717510:CDS 40.0%
!! ATCCTAGATGGGCTGTTTAT+GGG + chr5_1:11312694-11312713 Msa0717510:CDS 40.0%
CAATGACACGTAGATACCAA+AGG - chr5_1:11313058-11313077 None:intergenic 40.0%
CTATGTGTCAGTGTCATATC+CGG + chr5_1:11313184-11313203 Msa0717510:intron 40.0%
AGCAACACAGACACATATAC+CGG - chr5_1:11313206-11313225 None:intergenic 40.0%
!! ACTTCCTTGGTGATGATGTA+TGG + chr5_1:11313301-11313320 Msa0717510:intron 40.0%
ATGTCCATACATCATCACCA+AGG - chr5_1:11313308-11313327 None:intergenic 40.0%
TCACAACCTTTGGTACCTAA+TGG + chr5_1:11313608-11313627 Msa0717510:intron 40.0%
AACCTTTGGTACCTAATGGA+TGG + chr5_1:11313612-11313631 Msa0717510:intron 40.0%
GCTACATAAACAACCTAGGA+TGG + chr5_1:11313682-11313701 Msa0717510:intron 40.0%
! TTTTGTGTATAGGTCGTCCT+AGG + chr5_1:11313859-11313878 Msa0717510:intron 40.0%
TTGTTCCATCGTTGATGTTG+CGG + chr5_1:11314074-11314093 Msa0717510:intron 40.0%
GCTCTTTACAAAGCGGTAAT+TGG + chr5_1:11314435-11314454 Msa0717510:CDS 40.0%
TCTCAAGAGACAGTTGGTTA+TGG - chr5_1:11314472-11314491 None:intergenic 40.0%
CAACTGTCTCTTGAGAAACT+CGG + chr5_1:11314476-11314495 Msa0717510:CDS 40.0%
!! GCTGTTTTCATAAGCTATCC+TGG + chr5_1:11314761-11314780 Msa0717510:intron 40.0%
AGACTGTTCAGAAGAGCTTA+TGG - chr5_1:11314840-11314859 None:intergenic 40.0%
GAAAATGGGTCAGATATTCC+GGG - chr5_1:11314944-11314963 None:intergenic 40.0%
CCAAACTGGGTCAGATAAAA+CGG + chr5_1:11315127-11315146 Msa0717510:intron 40.0%
CAAACTGGGTCAGATAAAAC+GGG + chr5_1:11315128-11315147 Msa0717510:intron 40.0%
AGGATACCAACAGGTAACTA+AGG - chr5_1:11315176-11315195 None:intergenic 40.0%
GTTGTTTATGTGCTGGAAAC+AGG + chr5_1:11315217-11315236 Msa0717510:intron 40.0%
TTTATGTGCTGGAAACAGGA+TGG + chr5_1:11315221-11315240 Msa0717510:intron 40.0%
TTATGTGCTGGAAACAGGAT+GGG + chr5_1:11315222-11315241 Msa0717510:intron 40.0%
! TCATTTGCTGAGTCTTAGGA+TGG + chr5_1:11315411-11315430 Msa0717510:intron 40.0%
GTCTGAACAGCAAGATGTAA+TGG - chr5_1:11315444-11315463 None:intergenic 40.0%
! GTGAAGCTTCTGCTGATTAA+AGG + chr5_1:11315480-11315499 Msa0717510:CDS 40.0%
CCCACATTATCTAACACACA+AGG - chr5_1:11315577-11315596 None:intergenic 40.0%
TGTGGTGTTCCGTATAATTG+CGG + chr5_1:11315642-11315661 Msa0717510:intron 40.0%
AATGGGATGCCGCAATTATA+CGG - chr5_1:11315654-11315673 None:intergenic 40.0%
!! AATAGAAGCGGGCTGAATAT+AGG + chr5_1:11315861-11315880 Msa0717510:intron 40.0%
ATTTACCTACGAAGCAACTC+AGG + chr5_1:11315926-11315945 Msa0717510:intron 40.0%
CTCTTCCTTAAGAACCAGTT+AGG + chr5_1:11316085-11316104 Msa0717510:intron 40.0%
GAAAGACTTCCCTGGTTAAT+GGG - chr5_1:11316158-11316177 None:intergenic 40.0%
TCACTAAAGAAGCAAGTGCT+TGG - chr5_1:11316252-11316271 None:intergenic 40.0%
TACATATCTAGTCCCATGCT+TGG + chr5_1:11316277-11316296 Msa0717510:intron 40.0%
ACATATCTAGTCCCATGCTT+GGG + chr5_1:11316278-11316297 Msa0717510:intron 40.0%
ATTGACTAATCAACGCGTCA+CGG - chr5_1:11316351-11316370 None:intergenic 40.0%
!! GTCTTTTGTTTGTCTCAGGA+TGG + chr5_1:11316648-11316667 Msa0717510:intron 40.0%
TTTGACCAGAGTAAAGGCAA+AGG - chr5_1:11316689-11316708 None:intergenic 40.0%
! AGCCATTGCTGAGTTTTTCA+TGG + chr5_1:11316827-11316846 Msa0717510:three_prime_UTR 40.0%
TGCCATGAAAAACTCAGCAA+TGG - chr5_1:11316832-11316851 None:intergenic 40.0%
! ATTGCTGAGTTTTTCATGGC+AGG + chr5_1:11316831-11316850 Msa0717510:three_prime_UTR 40.0%
! TGGAGAGAAGAAGAGTGTGT+GGG - chr5_1:11312121-11312140 None:intergenic 45.0%
! ATGGAGAGAAGAAGAGTGTG+TGG - chr5_1:11312122-11312141 None:intergenic 45.0%
GGTGTGGAAGAAGAAGAAGA+AGG - chr5_1:11312147-11312166 None:intergenic 45.0%
AGATTGAAACTTGCGAGGTG+TGG - chr5_1:11312163-11312182 None:intergenic 45.0%
! ATTGGCTCAGTTGAAGCCTT+TGG + chr5_1:11312575-11312594 Msa0717510:CDS 45.0%
!! CAGTTGAAGCCTTTGGTTCT+TGG + chr5_1:11312582-11312601 Msa0717510:CDS 45.0%
!! GAAGCCTTTGGTTCTTGGTA+AGG + chr5_1:11312587-11312606 Msa0717510:CDS 45.0%
!! AAGAAGGTGGGTTGAGTGAT+GGG + chr5_1:11312643-11312662 Msa0717510:CDS 45.0%
TAGTGCCTAGGAATCCTAGA+TGG + chr5_1:11312682-11312701 Msa0717510:CDS 45.0%
AGTGCCTAGGAATCCTAGAT+GGG + chr5_1:11312683-11312702 Msa0717510:CDS 45.0%
TGTTTATGGGAGAGGTTTCG+AGG + chr5_1:11312707-11312726 Msa0717510:CDS 45.0%
GACTCTGCTGCTATGAAAAC+TGG + chr5_1:11312762-11312781 Msa0717510:CDS 45.0%
TCTGCTGCTATGAAAACTGG+AGG + chr5_1:11312765-11312784 Msa0717510:CDS 45.0%
CTACGTGTCAGTGTCGTATA+TGG + chr5_1:11312944-11312963 Msa0717510:intron 45.0%
! CTACGTGTCATTGTCACATC+TGG + chr5_1:11313065-11313084 Msa0717510:intron 45.0%
!! TATTGTTTAGGGTGCCGTTC+TGG + chr5_1:11313109-11313128 Msa0717510:intron 45.0%
!! TGGTGCTACTTCACAACCTT+TGG + chr5_1:11313598-11313617 Msa0717510:intron 45.0%
TGCCATCCATTAGGTACCAA+AGG - chr5_1:11313617-11313636 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr5_1:11313655-11313674 Msa0717510:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr5_1:11313656-11313675 Msa0717510:intron 45.0%
GTCGGCTACATAAACAACCT+AGG + chr5_1:11313678-11313697 Msa0717510:intron 45.0%
TCGTCCTAGGTTGTTTACCA+GGG + chr5_1:11313872-11313891 Msa0717510:CDS 45.0%
GAAGTAGCAACTGACAAGTC+TGG - chr5_1:11313927-11313946 None:intergenic 45.0%
CAGTGATTGTTCACCAGACA+TGG - chr5_1:11313960-11313979 None:intergenic 45.0%
TTACTCCGCAACATCAACGA+TGG - chr5_1:11314082-11314101 None:intergenic 45.0%
! CTTGCAGCAAAAGTGTGCAA+AGG - chr5_1:11314253-11314272 None:intergenic 45.0%
! TTGCACACTTTTGCTGCAAG+CGG + chr5_1:11314253-11314272 Msa0717510:CDS 45.0%
TTTGGCCGCTCTTTACAAAG+CGG + chr5_1:11314428-11314447 Msa0717510:CDS 45.0%
CGAGTTTCTCAAGAGACAGT+TGG - chr5_1:11314478-11314497 None:intergenic 45.0%
CAATGATGAATTCCCGGTGA+GGG - chr5_1:11314625-11314644 None:intergenic 45.0%
ACAATGATGAATTCCCGGTG+AGG - chr5_1:11314626-11314645 None:intergenic 45.0%
TAAGCTATCCTGGGAGCTTA+TGG + chr5_1:11314771-11314790 Msa0717510:intron 45.0%
GCATATTTCCATAAGCTCCC+AGG - chr5_1:11314782-11314801 None:intergenic 45.0%
! CCGTTTTATCTGACCCAGTT+TGG - chr5_1:11315130-11315149 None:intergenic 45.0%
TATGTGCTGGAAACAGGATG+GGG + chr5_1:11315223-11315242 Msa0717510:intron 45.0%
GTGGTCCACAAAAGAGTAAG+AGG - chr5_1:11315375-11315394 None:intergenic 45.0%
! ACTGGTCATTGGGTTTTCTG+TGG + chr5_1:11315616-11315635 Msa0717510:intron 45.0%
! CTGGTCATTGGGTTTTCTGT+GGG + chr5_1:11315617-11315636 Msa0717510:intron 45.0%
! TTGGGTTTTCTGTGGGTTTG+TGG + chr5_1:11315624-11315643 Msa0717510:intron 45.0%
CAAGACGCACAAAAAACTCG+CGG - chr5_1:11315697-11315716 None:intergenic 45.0%
!! AGGTGCTTTTAATGGGTCGT+TGG + chr5_1:11315881-11315900 Msa0717510:intron 45.0%
CAACATAACACCAACACACG+AGG - chr5_1:11316018-11316037 None:intergenic 45.0%
!! CTCGTGTGTTGGTGTTATGT+TGG + chr5_1:11316016-11316035 Msa0717510:intron 45.0%
AAGAGATTCGCCCATTAACC+AGG + chr5_1:11316145-11316164 Msa0717510:intron 45.0%
AGAGATTCGCCCATTAACCA+GGG + chr5_1:11316146-11316165 Msa0717510:intron 45.0%
GGAAAGACTTCCCTGGTTAA+TGG - chr5_1:11316159-11316178 None:intergenic 45.0%
TGACTTAGGAAAGACTTCCC+TGG - chr5_1:11316166-11316185 None:intergenic 45.0%
! ATCTGTCTGGAGCGTCTATA+AGG - chr5_1:11316750-11316769 None:intergenic 45.0%
TTATAGACGCTCCAGACAGA+TGG + chr5_1:11316749-11316768 Msa0717510:CDS 45.0%
TATAGACGCTCCAGACAGAT+GGG + chr5_1:11316750-11316769 Msa0717510:CDS 45.0%
TCTTCTTATCCCCATCTGTC+TGG - chr5_1:11316763-11316782 None:intergenic 45.0%
!!! ACATTTTTATTTTAAAAAAA+TGG - chr5_1:11316985-11317004 None:intergenic 5.0%
! AAGAAGAGTGTGTGGGGTTG+TGG - chr5_1:11312114-11312133 None:intergenic 50.0%
! GGAGAGAAGAAGAGTGTGTG+GGG - chr5_1:11312120-11312139 None:intergenic 50.0%
GACTGTCTTGTCTTCGAGGA+AGG + chr5_1:11312270-11312289 Msa0717510:CDS 50.0%
ACGAGGTTGTTGTCGGAAGT+TGG - chr5_1:11312318-11312337 None:intergenic 50.0%
!! GAAGAAGGTGGGTTGAGTGA+TGG + chr5_1:11312642-11312661 Msa0717510:CDS 50.0%
! TGATGGGTCTGGTGATGAGA+GGG + chr5_1:11312659-11312678 Msa0717510:CDS 50.0%
! ACAGCCCATCTAGGATTCCT+AGG - chr5_1:11312690-11312709 None:intergenic 50.0%
CTCCCATAAACAGCCCATCT+AGG - chr5_1:11312699-11312718 None:intergenic 50.0%
!! AGATGGGCTGTTTATGGGAG+AGG + chr5_1:11312699-11312718 Msa0717510:CDS 50.0%
ATACGTGTCAGCCACCAGAA+CGG - chr5_1:11313126-11313145 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr5_1:11313657-11313676 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr5_1:11313654-11313673 Msa0717510:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_1:11313660-11313679 Msa0717510:intron 50.0%
GTCGTCCTAGGTTGTTTACC+AGG + chr5_1:11313871-11313890 Msa0717510:CDS 50.0%
TCCTAGGTTGTTTACCAGGG+AGG + chr5_1:11313875-11313894 Msa0717510:CDS 50.0%
TCCTCCCTGGTAAACAACCT+AGG - chr5_1:11313879-11313898 None:intergenic 50.0%
GTTGTTTACCAGGGAGGAGA+GGG + chr5_1:11313881-11313900 Msa0717510:CDS 50.0%
AACATATACTCCCTCCGTCC+CGG + chr5_1:11314923-11314942 Msa0717510:intron 50.0%
ATGGGTCAGATATTCCGGGA+CGG - chr5_1:11314940-11314959 None:intergenic 50.0%
CTGGGTCAGATAAAACGGGA+CGG + chr5_1:11315132-11315151 Msa0717510:intron 50.0%
GTCAGATAAAACGGGACGGA+GGG + chr5_1:11315136-11315155 Msa0717510:intron 50.0%
TTGCTGAGTCTTAGGATGGC+TGG + chr5_1:11315415-11315434 Msa0717510:intron 50.0%
GAATGCCTGAGTTGCTTCGT+AGG - chr5_1:11315934-11315953 None:intergenic 50.0%
AATTTCAGTCCTCGCCTTGC+AGG + chr5_1:11316368-11316387 Msa0717510:intron 50.0%
GCCTTGCAGGAGAAGTGATA+AGG + chr5_1:11316381-11316400 Msa0717510:intron 50.0%
GCCTTATCACTTCTCCTGCA+AGG - chr5_1:11316385-11316404 None:intergenic 50.0%
GAGTAAAGGCAAAGGTCGAG+TGG - chr5_1:11316681-11316700 None:intergenic 50.0%
CTCGACCTTTGCCTTTACTC+TGG + chr5_1:11316681-11316700 Msa0717510:CDS 50.0%
ATAGACGCTCCAGACAGATG+GGG + chr5_1:11316751-11316770 Msa0717510:CDS 50.0%
GCAAGCAGCTCTTCAGCATA+TGG + chr5_1:11316856-11316875 Msa0717510:three_prime_UTR 50.0%
CGGAGACTGTCTTGTCTTCG+AGG + chr5_1:11312266-11312285 Msa0717510:CDS 55.0%
!! GTGATGGGTCTGGTGATGAG+AGG + chr5_1:11312658-11312677 Msa0717510:CDS 55.0%
GTGATGAGAGGGTAGTGCCT+AGG + chr5_1:11312670-11312689 Msa0717510:CDS 55.0%
CAGGTGCGCTTGACACGTAA+TGG + chr5_1:11312886-11312905 Msa0717510:intron 55.0%
!! TGTTTAGGGTGCCGTTCTGG+TGG + chr5_1:11313112-11313131 Msa0717510:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5_1:11313662-11313681 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_1:11313668-11313687 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_1:11313669-11313688 None:intergenic 55.0%
GGTTGTTTACCAGGGAGGAG+AGG + chr5_1:11313880-11313899 Msa0717510:CDS 55.0%
CAACAAATCCCTCTCCTCCC+TGG - chr5_1:11313892-11313911 None:intergenic 55.0%
GTCAGATATTCCGGGACGGA+GGG - chr5_1:11314936-11314955 None:intergenic 55.0%
GGTCAGATAAAACGGGACGG+AGG + chr5_1:11315135-11315154 Msa0717510:intron 55.0%
ATCACTTCTCCTGCAAGGCG+AGG - chr5_1:11316380-11316399 None:intergenic 55.0%
!! GGTGGGTTGAGTGATGGGTC+TGG + chr5_1:11312648-11312667 Msa0717510:CDS 60.0%
GATGAATTCCCGGTGAGGGC+AGG - chr5_1:11314621-11314640 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG - chr5_1:11314937-11314956 None:intergenic 60.0%
CGTGCTCTTCCTGCCCTCAC+CGG + chr5_1:11314609-11314628 Msa0717510:intron 65.0%
GTGCTCTTCCTGCCCTCACC+GGG + chr5_1:11314610-11314629 Msa0717510:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 11312000 11317044 11312000 ID=Msa0717510;Name=Msa0717510
chr5_1 mRNA 11312000 11317044 11312000 ID=Msa0717510-mRNA-1;Parent=Msa0717510;Name=Msa0717510-mRNA-1;_AED=0.09;_eAED=0.09;_QI=51|1|1|1|1|1|7|256|443
chr5_1 exon 11312000 11312786 11312000 ID=Msa0717510-mRNA-1:exon:4604;Parent=Msa0717510-mRNA-1
chr5_1 exon 11313871 11313947 11313871 ID=Msa0717510-mRNA-1:exon:4605;Parent=Msa0717510-mRNA-1
chr5_1 exon 11314238 11314336 11314238 ID=Msa0717510-mRNA-1:exon:4606;Parent=Msa0717510-mRNA-1
chr5_1 exon 11314423 11314521 11314423 ID=Msa0717510-mRNA-1:exon:4607;Parent=Msa0717510-mRNA-1
chr5_1 exon 11315239 11315337 11315239 ID=Msa0717510-mRNA-1:exon:4608;Parent=Msa0717510-mRNA-1
chr5_1 exon 11315429 11315527 11315429 ID=Msa0717510-mRNA-1:exon:4609;Parent=Msa0717510-mRNA-1
chr5_1 exon 11316666 11317044 11316666 ID=Msa0717510-mRNA-1:exon:4610;Parent=Msa0717510-mRNA-1
chr5_1 five_prime_UTR 11312000 11312050 11312000 ID=Msa0717510-mRNA-1:five_prime_utr;Parent=Msa0717510-mRNA-1
chr5_1 CDS 11312051 11312786 11312051 ID=Msa0717510-mRNA-1:cds;Parent=Msa0717510-mRNA-1
chr5_1 CDS 11313871 11313947 11313871 ID=Msa0717510-mRNA-1:cds;Parent=Msa0717510-mRNA-1
chr5_1 CDS 11314238 11314336 11314238 ID=Msa0717510-mRNA-1:cds;Parent=Msa0717510-mRNA-1
chr5_1 CDS 11314423 11314521 11314423 ID=Msa0717510-mRNA-1:cds;Parent=Msa0717510-mRNA-1
chr5_1 CDS 11315239 11315337 11315239 ID=Msa0717510-mRNA-1:cds;Parent=Msa0717510-mRNA-1
chr5_1 CDS 11315429 11315527 11315429 ID=Msa0717510-mRNA-1:cds;Parent=Msa0717510-mRNA-1
chr5_1 CDS 11316666 11316788 11316666 ID=Msa0717510-mRNA-1:cds;Parent=Msa0717510-mRNA-1
chr5_1 three_prime_UTR 11316789 11317044 11316789 ID=Msa0717510-mRNA-1:three_prime_utr;Parent=Msa0717510-mRNA-1
Gene Sequence

>Msa0717510

ATGTTGTCAATTGCAACAAGAACAACAAAAATGTTCAATTTTTCCACACTTGTTCATAATCCACAACCCCACACACTCTTCTTCTCTCCATTCCCTTCTTCTTCTTCTTCCACACCTCGCAAGTTTCAATCTTTTCAATCTCTCACAAACCGCAACTTCCACAAAATTCTCTCTTCATCACACCAACATGACAACAACTACGAAGAACACATCATCGGAGACTGTCTTGTCTTCGAGGAAGGCATTTTCGAAGACCCCATTTTTCCAACTTCCGACAACAACCTCGTAAACAACAAAAAACCAAAACCAATTTCAAAGAAGAAAAAGAAGACAGTGGTAAAGTCCGAGAATCTTGTTCCTGATAAATGGAAAGAAGTTCAAGCAGAGATAAACATAACGAAGAAAGAACGGCGTAAGATAGCTCAAGAGATTGAGTTTAATAGTAAAGTTATGAAGAAGAAAAGAGGGTTGATTCCTTTGAGGGATATGGATTTGAATGAGTATAAGGCTTATAAAGAAGCTAAATTGGCTCAGTTGAAGCCTTTGGTTCTTGGTAAGGTTTTTGCTGAGAAAGAAGATGATGAAGAAGAAGAAGAAGGTGGGTTGAGTGATGGGTCTGGTGATGAGAGGGTAGTGCCTAGGAATCCTAGATGGGCTGTTTATGGGAGAGGTTTCGAGGATGTTAATGAGTTTTTGAATAGTGAGAGTTATGACTCTGCTGCTATGAAAACTGGAGGTCGTCCTAGGTTGTTTACCAGGGAGGAGAGGGATTTGTTGAGTAAGAAAAAGCCAGACTTGTCAGTTGCTACTTCAGATAAATGGCTTCCTTTGCACACTTTTGCTGCAAGCGGAGAATCTTTACTTTTAGAATCTTTGTTGCGGCATGATGTTGATATTAATGTTATGGATAAGGATGGTTTGGCCGCTCTTTACAAAGCGGTAATTGGAAGAAAGCATGCCATAACCAACTGTCTCTTGAGAAACTCGGCGAATCCGTTTGTGCAAGATAATGATGGGGCCACCTTGATTCATTATGCTGTACAAACAGCGTCTGTCCGAACAATTAAAGTACTCTTGTTGTACAATGTGGATATAAATCTTCAGGACAATGATGGCTGGACACCATTACATCTTGCTGTTCAGACTCAGAGAACTGATATAGTGAAGCTTCTGCTGATTAAAGGTGCTGATCAGAAATTAAAAAACAAGGATGGTTTAACTCCACTCGACCTTTGCCTTTACTCTGGTCAAAATGTCAGAACATATGAGTTAATCAAGTTGTTGAAACAGCCTTATAGACGCTCCAGACAGATGGGGATAAGAAGAAAATAA

Protein sequence

>Msa0717510

MLSIATRTTKMFNFSTLVHNPQPHTLFFSPFPSSSSSTPRKFQSFQSLTNRNFHKILSSSHQHDNNYEEHIIGDCLVFEEGIFEDPIFPTSDNNLVNNKKPKPISKKKKKTVVKSENLVPDKWKEVQAEINITKKERRKIAQEIEFNSKVMKKKRGLIPLRDMDLNEYKAYKEAKLAQLKPLVLGKVFAEKEDDEEEEEGGLSDGSGDERVVPRNPRWAVYGRGFEDVNEFLNSESYDSAAMKTGGRPRLFTREERDLLSKKKPDLSVATSDKWLPLHTFAASGESLLLESLLRHDVDINVMDKDGLAALYKAVIGRKHAITNCLLRNSANPFVQDNDGATLIHYAVQTASVRTIKVLLLYNVDINLQDNDGWTPLHLAVQTQRTDIVKLLLIKGADQKLKNKDGLTPLDLCLYSGQNVRTYELIKLLKQPYRRSRQMGIRRK*