AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930160 MtrunA17_Chr8g0392621 98.852 871 10 0 1 871 22 892 0.0 1771
Msa0930160 MtrunA17_Chr6g0483131 65.873 882 265 16 5 870 8 869 0.0 1070
Msa0930160 MtrunA17_Chr4g0070741 27.178 482 212 19 518 867 593 1067 4.76e-29 125
Msa0930160 MtrunA17_Chr4g0070741 26.115 471 287 17 109 538 57 507 2.45e-22 103
Msa0930160 MtrunA17_Chr2g0300211 34.500 200 123 4 99 293 70 266 1.53e-27 120
Msa0930160 MtrunA17_Chr2g0300211 24.893 466 216 16 519 855 704 1164 4.18e-27 119
Msa0930160 MtrunA17_Chr1g0150791 36.207 174 105 3 105 275 76 246 6.12e-27 118
Msa0930160 MtrunA17_Chr1g0150791 24.681 470 260 14 471 871 621 1065 2.45e-26 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930160 AT1G42550.1 54.989 882 325 27 9 869 12 842 0.0 816
Msa0930160 AT5G20610.1 30.383 339 209 11 87 413 38 361 3.78e-27 119
Msa0930160 AT5G20610.1 33.498 203 126 4 514 709 701 901 1.23e-22 105
Msa0930160 AT5G26160.3 31.925 213 126 6 65 272 32 230 1.10e-24 111
Msa0930160 AT5G26160.3 25.613 367 227 12 517 851 590 942 1.12e-19 95.1
Msa0930160 AT5G26160.2 31.925 213 126 6 65 272 32 230 1.33e-24 111
Msa0930160 AT5G26160.2 25.613 367 227 12 517 851 590 942 1.04e-19 95.5
Msa0930160 AT5G26160.1 31.925 213 126 6 65 272 32 230 1.33e-24 111
Msa0930160 AT5G26160.1 25.613 367 227 12 517 851 590 942 1.04e-19 95.5

Find 226 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACACATCAACAACTAATT+TGG 0.112687 6_2:-78971210 Msa0930160:CDS
TCGTTTCTGCTTGTCATTCT+AGG 0.136217 6_2:+78970549 None:intergenic
CTATGTGGTCATCAACTTTC+TGG 0.179146 6_2:+78970421 None:intergenic
AGTTGTAAAGGTGGAATTTC+AGG 0.189977 6_2:+78970036 None:intergenic
AATATCAGCGTGACTCTTTC+AGG 0.228861 6_2:+78969277 None:intergenic
ACATCTGCATTGCTAGCTTT+GGG 0.242611 6_2:+78969860 None:intergenic
CTGAGCATTGGGATTGTTCT+TGG 0.248888 6_2:+78971493 None:intergenic
TGCAACCGGTTTCTCTTCTA+TGG 0.251241 6_2:+78970299 None:intergenic
GAGGAATCATGAACTGGATT+TGG 0.266943 6_2:+78970453 None:intergenic
GACATCTGCATTGCTAGCTT+TGG 0.273912 6_2:+78969859 None:intergenic
GTTTGACTTGTTTCAGAAAT+TGG 0.274326 6_2:-78969797 Msa0930160:CDS
CACCTCTTTGGTTTCTGTCT+TGG 0.280369 6_2:+78971238 None:intergenic
GATGCTCAAGAGCTGGATTT+TGG 0.294691 6_2:-78970861 Msa0930160:CDS
CTTATTCATGCAACACGTTC+TGG 0.320960 6_2:-78969193 Msa0930160:CDS
GGAAAGTGGGAAAGATCTTT+TGG 0.322823 6_2:-78969386 Msa0930160:CDS
CTTGGCTTCCATGAATCCTT+TGG 0.326206 6_2:-78969908 Msa0930160:CDS
ATGCGTGCACTTTCACATAT+TGG 0.332421 6_2:-78971149 Msa0930160:CDS
TGTGTTAACCACCACCTCTT+TGG 0.342541 6_2:+78971226 None:intergenic
GTCCCATGCATTCTTATTTG+TGG 0.349501 6_2:+78969093 None:intergenic
CTTCTTCTCATGATTGTTGT+TGG 0.355425 6_2:+78970923 None:intergenic
TCGGATTCTCCTCCATCTTC+CGG 0.357183 6_2:+78969994 None:intergenic
AACACATCAACAACTAATTT+GGG 0.359751 6_2:-78971209 Msa0930160:CDS
AGAAGCTTCTCTGAAGTAAC+TGG 0.362673 6_2:+78969523 None:intergenic
AGGCACACTGAAGGATGATT+TGG 0.363853 6_2:+78970575 None:intergenic
CTGCTTGTCATTCTAGGACT+AGG 0.364675 6_2:+78970555 None:intergenic
GCCTAACTCGTGCACCTTGT+TGG 0.364828 6_2:+78970787 None:intergenic
AGAATGAGAAGAAAGGGATT+TGG 0.370371 6_2:-78971184 Msa0930160:CDS
CAAATCATCCATTCCTTGAA+TGG 0.372936 6_2:+78970488 None:intergenic
ATGTGGGTGGTTTCAAAGTT+AGG 0.372982 6_2:-78969120 Msa0930160:CDS
TTCTGACCTCGGTAAAGGCT+TGG 0.373813 6_2:-78969962 Msa0930160:CDS
TGAAAGAGTCACGCTGATAT+TGG 0.381885 6_2:-78969275 Msa0930160:CDS
GAAATTCCATCCTCAAGCTT+TGG 0.383944 6_2:+78971260 None:intergenic
TGACAAACTACTCAACTTGC+TGG 0.387407 6_2:+78970620 None:intergenic
GATACGAGCTTCAAGTTATC+TGG 0.390732 6_2:-78970759 Msa0930160:CDS
CTGCTATTCCACTTGAGGAT+TGG 0.394911 6_2:-78969360 Msa0930160:CDS
CTGGACTTTGAATTCTGCAT+TGG 0.395970 6_2:+78970639 None:intergenic
AGGAATCATGAACTGGATTT+GGG 0.397713 6_2:+78970454 None:intergenic
TTTCAGAAATTGGCTGGCAT+TGG 0.398106 6_2:-78969787 Msa0930160:CDS
TCTGACCTCGGTAAAGGCTT+GGG 0.399031 6_2:-78969961 Msa0930160:CDS
TTCACAACCTCATCTGCAAC+CGG 0.404254 6_2:+78970285 None:intergenic
ACTTCTTCATATCGTCTCAT+TGG 0.404417 6_2:+78969235 None:intergenic
AACAAGAGATGGCGGATACT+TGG 0.406870 6_2:-78969926 Msa0930160:CDS
TCTTCAAGAATCTGAGCATT+GGG 0.406979 6_2:+78971482 None:intergenic
TGCTGTTGATGCTCAAGAGC+TGG 0.408444 6_2:-78970868 Msa0930160:CDS
ATGCAATGGTTAGTTGCATA+TGG 0.412127 6_2:-78969046 Msa0930160:CDS
AACAACATCCAAAGGATTCA+TGG 0.412903 6_2:+78969900 None:intergenic
AGAGGAAGAGACGGAATCAT+TGG 0.413020 6_2:-78970142 Msa0930160:CDS
TGGGAGAGAATGAGAAGAAA+GGG 0.417323 6_2:-78971190 Msa0930160:CDS
CTTTGTTGTAGCTTAAGCTT+TGG 0.419370 6_2:+78969329 None:intergenic
GGCTAGTCTTAGTCCGTTCA+TGG 0.419473 6_2:+78971064 None:intergenic
CACTTTACAAGCTTGACATC+GGG 0.426837 6_2:+78968911 None:intergenic
ATCGAATGGAGCTTCTTCTT+CGG 0.429366 6_2:+78969435 None:intergenic
GCAACACGTTCTGGCACAAA+GGG 0.435630 6_2:-78969184 Msa0930160:CDS
ACTGCAACTGCAAGTTCTAA+TGG 0.438234 6_2:-78969304 Msa0930160:CDS
TCCTCCATCTTCCGGAGAAT+CGG 0.440582 6_2:+78970002 None:intergenic
ATTGTCATTGTGATCTTCAA+TGG 0.443126 6_2:+78971361 None:intergenic
TGGGAAAAGCAGGGAAGAAA+GGG 0.443601 6_2:-78969021 Msa0930160:CDS
TTGGGAAAAGCAGGGAAGAA+AGG 0.444809 6_2:-78969022 Msa0930160:CDS
GGAGAACTTGTTGTGAAACT+TGG 0.445170 6_2:-78970723 Msa0930160:CDS
TGGTTAGTTGCATATGGGTT+GGG 0.448026 6_2:-78969040 Msa0930160:CDS
TAAGACTAGCCGTTTGCGTT+AGG 0.448434 6_2:-78971052 Msa0930160:CDS
ATGTCAAACATTATCAGTTC+AGG 0.453173 6_2:-78969592 Msa0930160:CDS
AAAAGCTCTTGAGTCTATGA+TGG 0.453235 6_2:-78970196 Msa0930160:CDS
TTTCAGATTGTGGAGAAAGA+TGG 0.453818 6_2:-78970699 Msa0930160:CDS
GACTTGTTTCAGAAATTGGC+TGG 0.453957 6_2:-78969793 Msa0930160:CDS
GCCAACAAGGTGCACGAGTT+AGG 0.454298 6_2:-78970788 Msa0930160:CDS
GCATATGGGTTGGGAAAAGC+AGG 0.456357 6_2:-78969031 Msa0930160:CDS
GGCTTCTGCTATTCCACTTG+AGG 0.457095 6_2:-78969365 Msa0930160:CDS
GCTTTGGTCTTGATCGCCAT+GGG 0.457357 6_2:+78971276 None:intergenic
AACGAATATCAACAGGACTT+TGG 0.460472 6_2:-78969561 Msa0930160:CDS
TGATCTTCAATGGATGGAAC+AGG 0.463470 6_2:+78971371 None:intergenic
AGCCGTTTGCGTTAGGAAGA+AGG 0.466046 6_2:-78971045 Msa0930160:CDS
ATTCCACCTTTACAACTTGA+AGG 0.467961 6_2:-78970030 Msa0930160:CDS
CAGATTGTGGAGAAAGATGG+AGG 0.468329 6_2:-78970696 Msa0930160:CDS
TTCTTCAAGAATCTGAGCAT+TGG 0.469470 6_2:+78971481 None:intergenic
TTGTTCTTGGCATCTGCCAT+TGG 0.473010 6_2:+78971506 None:intergenic
CTGCACTCAGCTCAAAGAAA+GGG 0.475554 6_2:-78969408 Msa0930160:CDS
GGTAGTTGATAAAGGGATTG+AGG 0.475867 6_2:-78970364 Msa0930160:CDS
AGCTCAAAGAAAGGGGAAAG+TGG 0.476835 6_2:-78969400 Msa0930160:CDS
TTCCTTCTTCCTAACGCAAA+CGG 0.477467 6_2:+78971043 None:intergenic
TATCTTTCTGACCTCGGTAA+AGG 0.481608 6_2:-78969967 Msa0930160:CDS
GAAGAAGAGGAATCATGAAC+TGG 0.483448 6_2:+78970447 None:intergenic
AGCTTTGGTCTTGATCGCCA+TGG 0.485605 6_2:+78971275 None:intergenic
CTTGACATCGGGATTTCTCA+TGG 0.485916 6_2:+78968922 None:intergenic
TAATAATTCAATGAAAATAG+AGG 0.486967 6_2:-78970160 Msa0930160:CDS
AGGAGAGAACGAATATCAAC+AGG 0.488196 6_2:-78969568 Msa0930160:CDS
TTGGGAGAGAATGAGAAGAA+AGG 0.488412 6_2:-78971191 Msa0930160:CDS
CTTGTTCCTACCTTGTACGA+CGG 0.489568 6_2:+78969663 None:intergenic
TGAAGGGCATGCCGATTCTC+CGG 0.490624 6_2:-78970013 Msa0930160:CDS
AGAAGAAAGGGATTTGGAAG+TGG 0.490924 6_2:-78971178 Msa0930160:CDS
TTATCAACTACCTCAAAATC+CGG 0.493481 6_2:+78970375 None:intergenic
GAAGGTGGCAGTGCCATTCA+AGG 0.493689 6_2:-78970501 Msa0930160:CDS
GTCTCATTGGATCCCGCAGT+TGG 0.493983 6_2:+78969248 None:intergenic
AGAAACTATGCGGGCAGCGC+TGG 0.502243 6_2:+78969627 None:intergenic
GAATCCTTTGGATGTTGTTG+TGG 0.502472 6_2:-78969896 Msa0930160:CDS
TCATGCGATGCCAACACAAA+AGG 0.503833 6_2:+78969832 None:intergenic
CTGTTTGTTCTCTGTTGAAG+TGG 0.506284 6_2:-78971111 Msa0930160:CDS
CAAAGGGACAAGACCTGCTA+TGG 0.506660 6_2:-78968985 Msa0930160:CDS
CATCTGCATTGCTAGCTTTG+GGG 0.507161 6_2:+78969861 None:intergenic
ATGAGACGATATGAAGAAGT+TGG 0.507288 6_2:-78969232 Msa0930160:CDS
GGGAAGAAGACATTGACAAA+GGG 0.509402 6_2:-78969001 Msa0930160:CDS
AGGGATTGAGGTTCAAGAGA+AGG 0.509466 6_2:-78970352 Msa0930160:CDS
CTTAGTCCGTTCATGGAAGA+AGG 0.510345 6_2:+78971071 None:intergenic
TAAAACCATAGAAGAGAAAC+CGG 0.511009 6_2:-78970304 Msa0930160:CDS
AAACAAGTCAAACCCACTTA+CGG 0.513728 6_2:+78969807 None:intergenic
GAGTTGTTCGTGGCAAAACA+AGG 0.514347 6_2:+78971393 None:intergenic
GTCGCATGTCCTTGTCCCCA+TGG 0.514497 6_2:-78971292 Msa0930160:CDS
TCTGCACTCAGCTCAAAGAA+AGG 0.515153 6_2:-78969409 Msa0930160:CDS
TTTCCCATCAGTTCATCTAT+CGG 0.516995 6_2:+78969724 None:intergenic
TTTCAATGCCTCAACTGCCA+TGG 0.518234 6_2:+78969474 None:intergenic
GAGTATTTCGTCACGGATCG+TGG 0.521965 6_2:-78968963 Msa0930160:CDS
CAGTTCATCTATCGGCATCA+AGG 0.524088 6_2:+78969732 None:intergenic
AGCTGTTCTTCGAGCTGTGG+TGG 0.524261 6_2:+78971418 None:intergenic
TTCCACCTTTACAACTTGAA+GGG 0.526364 6_2:-78970029 Msa0930160:CDS
CAAGAGAAGGAAGAAGATGA+AGG 0.527000 6_2:-78970339 Msa0930160:CDS
GAAGGAAGAAGATGAAGGTG+AGG 0.527620 6_2:-78970334 Msa0930160:CDS
CAGATGAAGAAACTGTGACT+AGG 0.532322 6_2:-78970116 Msa0930160:CDS
AGATGAAGAAACTGTGACTA+GGG 0.533523 6_2:-78970115 Msa0930160:CDS
AATGCAGAAGATTGAATCCA+TGG 0.535381 6_2:-78969491 Msa0930160:CDS
CATGCCGATTCTCCGGAAGA+TGG 0.536713 6_2:-78970006 Msa0930160:CDS
CACGGATCGTGGCTGATATG+TGG 0.539317 6_2:-78968952 Msa0930160:CDS
GATTGAATCCATGGCAGTTG+AGG 0.540044 6_2:-78969482 Msa0930160:CDS
AGAGAAACCGGTTGCAGATG+AGG 0.540398 6_2:-78970292 Msa0930160:CDS
GCATCGCATGAATCCGTAAG+TGG 0.540823 6_2:-78969820 Msa0930160:CDS
ACTGCTTTCACTGTAAACTT+CGG 0.543612 6_2:+78971331 None:intergenic
GTTCCACAAATAAGAATGCA+TGG 0.544139 6_2:-78969096 Msa0930160:CDS
ATCGCGTCAGCCGTCGTACA+AGG 0.544732 6_2:-78969673 Msa0930160:CDS
GGATGTGTGTGATTTGTAGA+GGG 0.546560 6_2:+78971439 None:intergenic
GACCTTCCTTCTTCCATGAA+CGG 0.548612 6_2:-78971077 Msa0930160:CDS
TGCAATGGTTAGTTGCATAT+GGG 0.549444 6_2:-78969045 Msa0930160:CDS
GAGTCTATGATGGGAGATGA+TGG 0.552409 6_2:-78970186 Msa0930160:CDS
GATATTGGTTGTCCAACTGC+GGG 0.552803 6_2:-78969260 Msa0930160:CDS
CGGTAAAGGCTTGGGTTGTG+TGG 0.554157 6_2:-78969953 Msa0930160:CDS
TCTTGATCGCCATGGGGACA+AGG 0.555366 6_2:+78971283 None:intergenic
TGGCAGTGCCATTCAAGGAA+TGG 0.555467 6_2:-78970496 Msa0930160:CDS
TTTCAATGCAGAAACTATGC+GGG 0.556470 6_2:+78969618 None:intergenic
GGGCTAAGGAGGAGGAGAAG+AGG 0.559729 6_2:-78969162 Msa0930160:CDS
GTGACGAAATACTCCATAGC+AGG 0.562189 6_2:+78968972 None:intergenic
CTAGCCACAACAACATCCAA+AGG 0.562371 6_2:+78969892 None:intergenic
GCATGCCCTTCAAGTTGTAA+AGG 0.562567 6_2:+78970024 None:intergenic
TGGGGACAAGGACATGCGAC+GGG 0.563051 6_2:+78971295 None:intergenic
TCACTTTACAAGCTTGACAT+CGG 0.564256 6_2:+78968910 None:intergenic
TGGATGTGTGTGATTTGTAG+AGG 0.564843 6_2:+78971438 None:intergenic
CAAAGTAACAAGCATGCATG+TGG 0.566320 6_2:-78969137 Msa0930160:CDS
GACAGAAACCAAAGAGGTGG+TGG 0.570453 6_2:-78971234 Msa0930160:CDS
TCATTGTGATCTTCAATGGA+TGG 0.574269 6_2:+78971365 None:intergenic
TCAAGACCAAAGCTTGAGGA+TGG 0.574280 6_2:-78971266 Msa0930160:CDS
AAGGTGCACGAGTTAGGCAG+TGG 0.574926 6_2:-78970782 Msa0930160:CDS
GCTCAAAGAAAGGGGAAAGT+GGG 0.576184 6_2:-78969399 Msa0930160:CDS
AAAGCTCTTGAGTCTATGAT+GGG 0.578864 6_2:-78970195 Msa0930160:CDS
TGCAACACGTTCTGGCACAA+AGG 0.579645 6_2:-78969185 Msa0930160:CDS
AACTTTCTGGACAGAAGAAG+AGG 0.581837 6_2:+78970434 None:intergenic
AATGAAAATAGAGGAAGAGA+CGG 0.582509 6_2:-78970151 Msa0930160:CDS
GGAAGCTGTTCTTCGAGCTG+TGG 0.583506 6_2:+78971415 None:intergenic
ATGGTTAGTTGCATATGGGT+TGG 0.588597 6_2:-78969041 Msa0930160:CDS
GGAGTTTCTTCAGATGCTTG+AGG 0.589691 6_2:-78970094 Msa0930160:CDS
AATCCTCCACTTGTTCTATG+TGG 0.592843 6_2:+78970406 None:intergenic
GATGGAACAGGAGTTGTTCG+TGG 0.594167 6_2:+78971383 None:intergenic
TGATGACCACATAGAACAAG+TGG 0.594643 6_2:-78970412 Msa0930160:CDS
CGTTAGGAAGAAGGAAACAA+AGG 0.595602 6_2:-78971036 Msa0930160:CDS
AGACGATATGAAGAAGTTGG+AGG 0.596461 6_2:-78969229 Msa0930160:CDS
AAGTTATCTGGAAAGGCGAA+AGG 0.598430 6_2:-78970747 Msa0930160:CDS
TGTGTGGTTCAAACAAGAGA+TGG 0.599945 6_2:-78969937 Msa0930160:CDS
TGCCCTTCAAGTTGTAAAGG+TGG 0.600821 6_2:+78970027 None:intergenic
TGCACTCAGCTCAAAGAAAG+GGG 0.602008 6_2:-78969407 Msa0930160:CDS
AAAGACTAACTGCAATGCAA+TGG 0.603303 6_2:-78969060 Msa0930160:CDS
GTCCGTTCATGGAAGAAGGA+AGG 0.603868 6_2:+78971075 None:intergenic
TCCGTTGAGAAAAGCCAACA+AGG 0.603895 6_2:-78970801 Msa0930160:CDS
GTTTCTTCAGATGCTTGAGG+AGG 0.606539 6_2:-78970091 Msa0930160:CDS
TGATATTGGTTGTCCAACTG+CGG 0.606602 6_2:-78969261 Msa0930160:CDS
AGATAAATTGAAAAGGGACG+TGG 0.607650 6_2:+78970894 None:intergenic
GATGCCGATAGATGAACTGA+TGG 0.613209 6_2:-78969728 Msa0930160:CDS
TCTCTAATCCAATCCTCAAG+TGG 0.613755 6_2:+78969352 None:intergenic
AGGGAAGAAGACATTGACAA+AGG 0.614678 6_2:-78969002 Msa0930160:CDS
TCAGATTCTTGAAGAACTAG+AGG 0.615369 6_2:-78971474 Msa0930160:CDS
TGCTATGGAGTATTTCGTCA+CGG 0.616016 6_2:-78968970 Msa0930160:CDS
GAGGTCAGAAAGATATACTT+CGG 0.619421 6_2:+78969975 None:intergenic
CAAAGCTTAAGCTACAACAA+AGG 0.620042 6_2:-78969328 Msa0930160:CDS
CGTCAGCCGTCGTACAAGGT+AGG 0.620909 6_2:-78969669 Msa0930160:CDS
GGTTGCAGATGAGGTTGTGA+AGG 0.621662 6_2:-78970283 Msa0930160:CDS
CTGAGTGCAGAAACATCGAA+TGG 0.625191 6_2:+78969421 None:intergenic
TGTTGTTGGTATAATAAGCA+TGG 0.627355 6_2:+78970937 None:intergenic
GAAGTATATCTTTCTGACCT+CGG 0.627389 6_2:-78969973 Msa0930160:CDS
GTAAAGGTGGAATTTCAGGT+TGG 0.628299 6_2:+78970040 None:intergenic
CATCGCATGAATCCGTAAGT+GGG 0.628618 6_2:-78969819 Msa0930160:CDS
ATATGTGAAAGTGCACGCAT+CGG 0.629019 6_2:+78971152 None:intergenic
TTTGGATTGTTTGCGTGCGA+AGG 0.630319 6_2:+78970593 None:intergenic
GGCATTGGTCTTGATGAACT+CGG 0.632439 6_2:-78969772 Msa0930160:CDS
AAGGACATGCGACGGGATCG+AGG 0.632471 6_2:+78971302 None:intergenic
ATTGAAAATTCAAGCTGACG+TGG 0.632872 6_2:-78969458 Msa0930160:CDS
ACTCCTTCACATTCACATGA+AGG 0.633586 6_2:-78970519 Msa0930160:CDS
TTCCACAAATAAGAATGCAT+GGG 0.633963 6_2:-78969095 Msa0930160:CDS
GCGATCAAGACCAAAGCTTG+AGG 0.634062 6_2:-78971270 Msa0930160:CDS
ATGCCATCACGTGTTTCACA+AGG 0.634809 6_2:-78970996 Msa0930160:CDS
GAGCTTCAAGTTATCTGGAA+AGG 0.635002 6_2:-78970754 Msa0930160:CDS
GCCGATTCTCCGGAAGATGG+AGG 0.639156 6_2:-78970003 Msa0930160:CDS
ATGGGGACAAGGACATGCGA+CGG 0.641046 6_2:+78971294 None:intergenic
CGTCGTACAAGGTAGGAACA+AGG 0.643621 6_2:-78969662 Msa0930160:CDS
AAAGTAACAAGCATGCATGT+GGG 0.649857 6_2:-78969136 Msa0930160:CDS
CAAGACAGAAACCAAAGAGG+TGG 0.653529 6_2:-78971237 Msa0930160:CDS
TCTAGGACTAGGCACACTGA+AGG 0.657190 6_2:+78970566 None:intergenic
GAGGAGGATCAAGACAGCAA+AGG 0.657946 6_2:-78970075 Msa0930160:CDS
AACACGTTCTGGCACAAAGG+GGG 0.659062 6_2:-78969182 Msa0930160:CDS
CAAACATTATCAGTTCAGGA+AGG 0.660678 6_2:-78969588 Msa0930160:CDS
CAAGCTCAGACAATCTAGCA+TGG 0.661428 6_2:+78970238 None:intergenic
AGGAAGAAGGAAACAAAGGA+TGG 0.665822 6_2:-78971032 Msa0930160:CDS
GTAACAAGCATGCATGTGGG+TGG 0.668323 6_2:-78969133 Msa0930160:CDS
GCTCCTTGTGAAACACGTGA+TGG 0.669131 6_2:+78970993 None:intergenic
ATGCCGATAGATGAACTGAT+GGG 0.669377 6_2:-78969727 Msa0930160:CDS
GCATGAATAAGCACCATCGT+AGG 0.672184 6_2:+78969205 None:intergenic
TTATCTGGAAAGGCGAAAGG+AGG 0.674087 6_2:-78970744 Msa0930160:CDS
CCTTCACATTCACATGAAGG+TGG 0.678609 6_2:-78970516 Msa0930160:CDS
AGGTGCACGAGTTAGGCAGT+GGG 0.679141 6_2:-78970781 Msa0930160:CDS
GTACAAGGTAGGAACAAGGA+AGG 0.681269 6_2:-78969658 Msa0930160:CDS
TTCCAAGACAGAAACCAAAG+AGG 0.681865 6_2:-78971240 Msa0930160:CDS
AGTTGTTCGTGGCAAAACAA+GGG 0.685686 6_2:+78971394 None:intergenic
TTCATCTATCGGCATCAAGG+AGG 0.688397 6_2:+78969735 None:intergenic
TGACCACATAGAACAAGTGG+AGG 0.689391 6_2:-78970409 Msa0930160:CDS
GTGGTTCAAACAAGAGATGG+CGG 0.692152 6_2:-78969934 Msa0930160:CDS
CCACCTTCATGTGAATGTGA+AGG 0.696835 6_2:+78970516 None:intergenic
AGAAGTTGGAGGACCTACGA+TGG 0.697633 6_2:-78969218 Msa0930160:CDS
TGACAAGCAGAAACGACGCG+TGG 0.698961 6_2:-78970542 Msa0930160:CDS
CTTTGGTCTTGATCGCCATG+GGG 0.700721 6_2:+78971277 None:intergenic
CAACACGTTCTGGCACAAAG+GGG 0.715647 6_2:-78969183 Msa0930160:CDS
CATATGGGTTGGGAAAAGCA+GGG 0.739417 6_2:-78969030 Msa0930160:CDS
CACAACCCAAGCCTTTACCG+AGG 0.745080 6_2:+78969956 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTCAATGAAAATAG+AGG - chr6_2:78970253-78970272 Msa0930160:CDS 15.0%
!! GCAAAAAGATAAATTGAAAA+GGG + chr6_2:78969528-78969547 None:intergenic 20.0%
!! AGCAAAAAGATAAATTGAAA+AGG + chr6_2:78969529-78969548 None:intergenic 20.0%
! TAACACATCAACAACTAATT+TGG - chr6_2:78969203-78969222 Msa0930160:CDS 25.0%
! AACACATCAACAACTAATTT+GGG - chr6_2:78969204-78969223 Msa0930160:CDS 25.0%
!!! ATTTTGAGGTAGTTGATAAA+GGG - chr6_2:78970042-78970061 Msa0930160:CDS 25.0%
ATTGTCATTGTGATCTTCAA+TGG + chr6_2:78969055-78969074 None:intergenic 30.0%
TGTTGTTGGTATAATAAGCA+TGG + chr6_2:78969479-78969498 None:intergenic 30.0%
TTATCAACTACCTCAAAATC+CGG + chr6_2:78970041-78970060 None:intergenic 30.0%
!!! GATTTTGAGGTAGTTGATAA+AGG - chr6_2:78970041-78970060 Msa0930160:CDS 30.0%
TAAAACCATAGAAGAGAAAC+CGG - chr6_2:78970109-78970128 Msa0930160:CDS 30.0%
AATGAAAATAGAGGAAGAGA+CGG - chr6_2:78970262-78970281 Msa0930160:CDS 30.0%
!! GTTTGACTTGTTTCAGAAAT+TGG - chr6_2:78970616-78970635 Msa0930160:CDS 30.0%
! TTTTCAATGCAGAAACTATG+CGG + chr6_2:78970799-78970818 None:intergenic 30.0%
ATGTCAAACATTATCAGTTC+AGG - chr6_2:78970821-78970840 Msa0930160:CDS 30.0%
TTCCACAAATAAGAATGCAT+GGG - chr6_2:78971318-78971337 Msa0930160:CDS 30.0%
TCTTCAAGAATCTGAGCATT+GGG + chr6_2:78968934-78968953 None:intergenic 35.0%
TTCTTCAAGAATCTGAGCAT+TGG + chr6_2:78968935-78968954 None:intergenic 35.0%
TCAGATTCTTGAAGAACTAG+AGG - chr6_2:78968939-78968958 Msa0930160:CDS 35.0%
TCATTGTGATCTTCAATGGA+TGG + chr6_2:78969051-78969070 None:intergenic 35.0%
ACTGCTTTCACTGTAAACTT+CGG + chr6_2:78969085-78969104 None:intergenic 35.0%
AGAATGAGAAGAAAGGGATT+TGG - chr6_2:78969229-78969248 Msa0930160:CDS 35.0%
CTTCTTCTCATGATTGTTGT+TGG + chr6_2:78969493-78969512 None:intergenic 35.0%
AGATAAATTGAAAAGGGACG+TGG + chr6_2:78969522-78969541 None:intergenic 35.0%
!! GAAACTTGGTTTTCAGATTG+TGG - chr6_2:78969704-78969723 Msa0930160:CDS 35.0%
TTTCAGATTGTGGAGAAAGA+TGG - chr6_2:78969714-78969733 Msa0930160:CDS 35.0%
CAAATCATCCATTCCTTGAA+TGG + chr6_2:78969928-78969947 None:intergenic 35.0%
AGGAATCATGAACTGGATTT+GGG + chr6_2:78969962-78969981 None:intergenic 35.0%
! TTTTGATCTTCCGGATTTTG+AGG - chr6_2:78970028-78970047 Msa0930160:CDS 35.0%
AAAAGCTCTTGAGTCTATGA+TGG - chr6_2:78970217-78970236 Msa0930160:CDS 35.0%
AAAGCTCTTGAGTCTATGAT+GGG - chr6_2:78970218-78970237 Msa0930160:CDS 35.0%
AGATGAAGAAACTGTGACTA+GGG - chr6_2:78970298-78970317 Msa0930160:CDS 35.0%
AGTTGTAAAGGTGGAATTTC+AGG + chr6_2:78970380-78970399 None:intergenic 35.0%
ATTCCACCTTTACAACTTGA+AGG - chr6_2:78970383-78970402 Msa0930160:CDS 35.0%
TTCCACCTTTACAACTTGAA+GGG - chr6_2:78970384-78970403 Msa0930160:CDS 35.0%
GAGGTCAGAAAGATATACTT+CGG + chr6_2:78970441-78970460 None:intergenic 35.0%
GAAGTATATCTTTCTGACCT+CGG - chr6_2:78970440-78970459 Msa0930160:CDS 35.0%
AACAACATCCAAAGGATTCA+TGG + chr6_2:78970516-78970535 None:intergenic 35.0%
AAACAAGTCAAACCCACTTA+CGG + chr6_2:78970609-78970628 None:intergenic 35.0%
TTTCCCATCAGTTCATCTAT+CGG + chr6_2:78970692-78970711 None:intergenic 35.0%
TTTCAATGCAGAAACTATGC+GGG + chr6_2:78970798-78970817 None:intergenic 35.0%
CAAACATTATCAGTTCAGGA+AGG - chr6_2:78970825-78970844 Msa0930160:CDS 35.0%
AACGAATATCAACAGGACTT+TGG - chr6_2:78970852-78970871 Msa0930160:CDS 35.0%
AATGCAGAAGATTGAATCCA+TGG - chr6_2:78970922-78970941 Msa0930160:CDS 35.0%
ATTGAAAATTCAAGCTGACG+TGG - chr6_2:78970955-78970974 Msa0930160:CDS 35.0%
! CTTTGTTGTAGCTTAAGCTT+TGG + chr6_2:78971087-78971106 None:intergenic 35.0%
CAAAGCTTAAGCTACAACAA+AGG - chr6_2:78971085-78971104 Msa0930160:CDS 35.0%
ACTTCTTCATATCGTCTCAT+TGG + chr6_2:78971181-78971200 None:intergenic 35.0%
ATGAGACGATATGAAGAAGT+TGG - chr6_2:78971181-78971200 Msa0930160:CDS 35.0%
AAAGTAACAAGCATGCATGT+GGG - chr6_2:78971277-78971296 Msa0930160:CDS 35.0%
GTTCCACAAATAAGAATGCA+TGG - chr6_2:78971317-78971336 Msa0930160:CDS 35.0%
AAAGACTAACTGCAATGCAA+TGG - chr6_2:78971353-78971372 Msa0930160:CDS 35.0%
! ATGCAATGGTTAGTTGCATA+TGG - chr6_2:78971367-78971386 Msa0930160:CDS 35.0%
! TGCAATGGTTAGTTGCATAT+GGG - chr6_2:78971368-78971387 Msa0930160:CDS 35.0%
TCACTTTACAAGCTTGACAT+CGG + chr6_2:78971506-78971525 None:intergenic 35.0%
! GGATGTGTGTGATTTGTAGA+GGG + chr6_2:78968977-78968996 None:intergenic 40.0%
! TGGATGTGTGTGATTTGTAG+AGG + chr6_2:78968978-78968997 None:intergenic 40.0%
AGTTGTTCGTGGCAAAACAA+GGG + chr6_2:78969022-78969041 None:intergenic 40.0%
TGATCTTCAATGGATGGAAC+AGG + chr6_2:78969045-78969064 None:intergenic 40.0%
GAAATTCCATCCTCAAGCTT+TGG + chr6_2:78969156-78969175 None:intergenic 40.0%
TTCCAAGACAGAAACCAAAG+AGG - chr6_2:78969173-78969192 Msa0930160:CDS 40.0%
TTGGGAGAGAATGAGAAGAA+AGG - chr6_2:78969222-78969241 Msa0930160:CDS 40.0%
TGGGAGAGAATGAGAAGAAA+GGG - chr6_2:78969223-78969242 Msa0930160:CDS 40.0%
AGAAGAAAGGGATTTGGAAG+TGG - chr6_2:78969235-78969254 Msa0930160:CDS 40.0%
! ATATGTGAAAGTGCACGCAT+CGG + chr6_2:78969264-78969283 None:intergenic 40.0%
ATGCGTGCACTTTCACATAT+TGG - chr6_2:78969264-78969283 Msa0930160:CDS 40.0%
CTGTTTGTTCTCTGTTGAAG+TGG - chr6_2:78969302-78969321 Msa0930160:CDS 40.0%
TTCCTTCTTCCTAACGCAAA+CGG + chr6_2:78969373-78969392 None:intergenic 40.0%
CGTTAGGAAGAAGGAAACAA+AGG - chr6_2:78969377-78969396 Msa0930160:CDS 40.0%
AGGAAGAAGGAAACAAAGGA+TGG - chr6_2:78969381-78969400 Msa0930160:CDS 40.0%
!! GGATTTTGGAAGAAGCTATG+TGG - chr6_2:78969566-78969585 Msa0930160:CDS 40.0%
!!! ACCTTGTTGGCTTTTCTCAA+CGG + chr6_2:78969616-78969635 None:intergenic 40.0%
! GATACGAGCTTCAAGTTATC+TGG - chr6_2:78969654-78969673 Msa0930160:CDS 40.0%
! GAGCTTCAAGTTATCTGGAA+AGG - chr6_2:78969659-78969678 Msa0930160:CDS 40.0%
AAGTTATCTGGAAAGGCGAA+AGG - chr6_2:78969666-78969685 Msa0930160:CDS 40.0%
!! GGAGAACTTGTTGTGAAACT+TGG - chr6_2:78969690-78969709 Msa0930160:CDS 40.0%
CTGGACTTTGAATTCTGCAT+TGG + chr6_2:78969777-78969796 None:intergenic 40.0%
TGACAAACTACTCAACTTGC+TGG + chr6_2:78969796-78969815 None:intergenic 40.0%
TCGTTTCTGCTTGTCATTCT+AGG + chr6_2:78969867-78969886 None:intergenic 40.0%
ACTCCTTCACATTCACATGA+AGG - chr6_2:78969894-78969913 Msa0930160:CDS 40.0%
GAGGAATCATGAACTGGATT+TGG + chr6_2:78969963-78969982 None:intergenic 40.0%
GAAGAAGAGGAATCATGAAC+TGG + chr6_2:78969969-78969988 None:intergenic 40.0%
AACTTTCTGGACAGAAGAAG+AGG + chr6_2:78969982-78970001 None:intergenic 40.0%
CTATGTGGTCATCAACTTTC+TGG + chr6_2:78969995-78970014 None:intergenic 40.0%
TGATGACCACATAGAACAAG+TGG - chr6_2:78970001-78970020 Msa0930160:CDS 40.0%
AATCCTCCACTTGTTCTATG+TGG + chr6_2:78970010-78970029 None:intergenic 40.0%
!! AGTGGAGGATTTTGATCTTC+CGG - chr6_2:78970019-78970038 Msa0930160:CDS 40.0%
!! GGTAGTTGATAAAGGGATTG+AGG - chr6_2:78970049-78970068 Msa0930160:CDS 40.0%
CAAGAGAAGGAAGAAGATGA+AGG - chr6_2:78970074-78970093 Msa0930160:CDS 40.0%
CAGATGAAGAAACTGTGACT+AGG - chr6_2:78970297-78970316 Msa0930160:CDS 40.0%
! GTAAAGGTGGAATTTCAGGT+TGG + chr6_2:78970376-78970395 None:intergenic 40.0%
TATCTTTCTGACCTCGGTAA+AGG - chr6_2:78970446-78970465 Msa0930160:CDS 40.0%
TGTGTGGTTCAAACAAGAGA+TGG - chr6_2:78970476-78970495 Msa0930160:CDS 40.0%
GAATCCTTTGGATGTTGTTG+TGG - chr6_2:78970517-78970536 Msa0930160:CDS 40.0%
!! ACATCTGCATTGCTAGCTTT+GGG + chr6_2:78970556-78970575 None:intergenic 40.0%
! GATGTCAAAGCCTTTTGTGT+TGG - chr6_2:78970571-78970590 Msa0930160:CDS 40.0%
! GACTTGTTTCAGAAATTGGC+TGG - chr6_2:78970620-78970639 Msa0930160:CDS 40.0%
TTTCAGAAATTGGCTGGCAT+TGG - chr6_2:78970626-78970645 Msa0930160:CDS 40.0%
ATGCCGATAGATGAACTGAT+GGG - chr6_2:78970686-78970705 Msa0930160:CDS 40.0%
AGGAGAGAACGAATATCAAC+AGG - chr6_2:78970845-78970864 Msa0930160:CDS 40.0%
!! AGAAGCTTCTCTGAAGTAAC+TGG + chr6_2:78970893-78970912 None:intergenic 40.0%
ATCGAATGGAGCTTCTTCTT+CGG + chr6_2:78970981-78971000 None:intergenic 40.0%
! GGAAAGTGGGAAAGATCTTT+TGG - chr6_2:78971027-78971046 Msa0930160:CDS 40.0%
TCTCTAATCCAATCCTCAAG+TGG + chr6_2:78971064-78971083 None:intergenic 40.0%
! ACTGCAACTGCAAGTTCTAA+TGG - chr6_2:78971109-78971128 Msa0930160:CDS 40.0%
AATATCAGCGTGACTCTTTC+AGG + chr6_2:78971139-78971158 None:intergenic 40.0%
TGAAAGAGTCACGCTGATAT+TGG - chr6_2:78971138-78971157 Msa0930160:CDS 40.0%
! TGATATTGGTTGTCCAACTG+CGG - chr6_2:78971152-78971171 Msa0930160:CDS 40.0%
AGACGATATGAAGAAGTTGG+AGG - chr6_2:78971184-78971203 Msa0930160:CDS 40.0%
CTTATTCATGCAACACGTTC+TGG - chr6_2:78971220-78971239 Msa0930160:CDS 40.0%
CAAAGTAACAAGCATGCATG+TGG - chr6_2:78971276-78971295 Msa0930160:CDS 40.0%
ATGTGGGTGGTTTCAAAGTT+AGG - chr6_2:78971293-78971312 Msa0930160:CDS 40.0%
! GTCCCATGCATTCTTATTTG+TGG + chr6_2:78971323-78971342 None:intergenic 40.0%
! ATGGTTAGTTGCATATGGGT+TGG - chr6_2:78971372-78971391 Msa0930160:CDS 40.0%
! TGGTTAGTTGCATATGGGTT+GGG - chr6_2:78971373-78971392 Msa0930160:CDS 40.0%
AGGGAAGAAGACATTGACAA+AGG - chr6_2:78971411-78971430 Msa0930160:CDS 40.0%
GGGAAGAAGACATTGACAAA+GGG - chr6_2:78971412-78971431 Msa0930160:CDS 40.0%
! TGCTATGGAGTATTTCGTCA+CGG - chr6_2:78971443-78971462 Msa0930160:CDS 40.0%
CACTTTACAAGCTTGACATC+GGG + chr6_2:78971505-78971524 None:intergenic 40.0%
!! CTGAGCATTGGGATTGTTCT+TGG + chr6_2:78968923-78968942 None:intergenic 45.0%
GAGTTGTTCGTGGCAAAACA+AGG + chr6_2:78969023-78969042 None:intergenic 45.0%
TCAAGACCAAAGCTTGAGGA+TGG - chr6_2:78969147-78969166 Msa0930160:CDS 45.0%
! CACCTCTTTGGTTTCTGTCT+TGG + chr6_2:78969178-78969197 None:intergenic 45.0%
CAAGACAGAAACCAAAGAGG+TGG - chr6_2:78969176-78969195 Msa0930160:CDS 45.0%
TGTGTTAACCACCACCTCTT+TGG + chr6_2:78969190-78969209 None:intergenic 45.0%
GACCTTCCTTCTTCCATGAA+CGG - chr6_2:78969336-78969355 Msa0930160:CDS 45.0%
CTTAGTCCGTTCATGGAAGA+AGG + chr6_2:78969345-78969364 None:intergenic 45.0%
! TAAGACTAGCCGTTTGCGTT+AGG - chr6_2:78969361-78969380 Msa0930160:CDS 45.0%
ATGCCATCACGTGTTTCACA+AGG - chr6_2:78969417-78969436 Msa0930160:CDS 45.0%
! GATGCTCAAGAGCTGGATTT+TGG - chr6_2:78969552-78969571 Msa0930160:CDS 45.0%
TCCGTTGAGAAAAGCCAACA+AGG - chr6_2:78969612-78969631 Msa0930160:CDS 45.0%
TTATCTGGAAAGGCGAAAGG+AGG - chr6_2:78969669-78969688 Msa0930160:CDS 45.0%
CAGATTGTGGAGAAAGATGG+AGG - chr6_2:78969717-78969736 Msa0930160:CDS 45.0%
TTTGGATTGTTTGCGTGCGA+AGG + chr6_2:78969823-78969842 None:intergenic 45.0%
AGGCACACTGAAGGATGATT+TGG + chr6_2:78969841-78969860 None:intergenic 45.0%
!! CTGCTTGTCATTCTAGGACT+AGG + chr6_2:78969861-78969880 None:intergenic 45.0%
CCACCTTCATGTGAATGTGA+AGG + chr6_2:78969900-78969919 None:intergenic 45.0%
CCTTCACATTCACATGAAGG+TGG - chr6_2:78969897-78969916 Msa0930160:CDS 45.0%
TGACCACATAGAACAAGTGG+AGG - chr6_2:78970004-78970023 Msa0930160:CDS 45.0%
AGGGATTGAGGTTCAAGAGA+AGG - chr6_2:78970061-78970080 Msa0930160:CDS 45.0%
GAAGGAAGAAGATGAAGGTG+AGG - chr6_2:78970079-78970098 Msa0930160:CDS 45.0%
! TGCAACCGGTTTCTCTTCTA+TGG + chr6_2:78970117-78970136 None:intergenic 45.0%
TTCACAACCTCATCTGCAAC+CGG + chr6_2:78970131-78970150 None:intergenic 45.0%
CAAGCTCAGACAATCTAGCA+TGG + chr6_2:78970178-78970197 None:intergenic 45.0%
! GAGTCTATGATGGGAGATGA+TGG - chr6_2:78970227-78970246 Msa0930160:CDS 45.0%
AGAGGAAGAGACGGAATCAT+TGG - chr6_2:78970271-78970290 Msa0930160:CDS 45.0%
GGAGTTTCTTCAGATGCTTG+AGG - chr6_2:78970319-78970338 Msa0930160:CDS 45.0%
GTTTCTTCAGATGCTTGAGG+AGG - chr6_2:78970322-78970341 Msa0930160:CDS 45.0%
!! TGCCCTTCAAGTTGTAAAGG+TGG + chr6_2:78970389-78970408 None:intergenic 45.0%
!! GCATGCCCTTCAAGTTGTAA+AGG + chr6_2:78970392-78970411 None:intergenic 45.0%
GTGGTTCAAACAAGAGATGG+CGG - chr6_2:78970479-78970498 Msa0930160:CDS 45.0%
!! AACAAGAGATGGCGGATACT+TGG - chr6_2:78970487-78970506 Msa0930160:CDS 45.0%
CTTGGCTTCCATGAATCCTT+TGG - chr6_2:78970505-78970524 Msa0930160:CDS 45.0%
CTAGCCACAACAACATCCAA+AGG + chr6_2:78970524-78970543 None:intergenic 45.0%
!! CATCTGCATTGCTAGCTTTG+GGG + chr6_2:78970555-78970574 None:intergenic 45.0%
! GACATCTGCATTGCTAGCTT+TGG + chr6_2:78970557-78970576 None:intergenic 45.0%
TCATGCGATGCCAACACAAA+AGG + chr6_2:78970584-78970603 None:intergenic 45.0%
CATCGCATGAATCCGTAAGT+GGG - chr6_2:78970594-78970613 Msa0930160:CDS 45.0%
!! GGCATTGGTCTTGATGAACT+CGG - chr6_2:78970641-78970660 Msa0930160:CDS 45.0%
TTCATCTATCGGCATCAAGG+AGG + chr6_2:78970681-78970700 None:intergenic 45.0%
CAGTTCATCTATCGGCATCA+AGG + chr6_2:78970684-78970703 None:intergenic 45.0%
GATGCCGATAGATGAACTGA+TGG - chr6_2:78970685-78970704 Msa0930160:CDS 45.0%
!! GCAGAGCAGATTGCTTTTGA+AGG - chr6_2:78970716-78970735 Msa0930160:CDS 45.0%
CTTGTTCCTACCTTGTACGA+CGG + chr6_2:78970753-78970772 None:intergenic 45.0%
GTACAAGGTAGGAACAAGGA+AGG - chr6_2:78970755-78970774 Msa0930160:CDS 45.0%
GATTGAATCCATGGCAGTTG+AGG - chr6_2:78970931-78970950 Msa0930160:CDS 45.0%
TTTCAATGCCTCAACTGCCA+TGG + chr6_2:78970942-78970961 None:intergenic 45.0%
CTGAGTGCAGAAACATCGAA+TGG + chr6_2:78970995-78971014 None:intergenic 45.0%
TCTGCACTCAGCTCAAAGAA+AGG - chr6_2:78971004-78971023 Msa0930160:CDS 45.0%
CTGCACTCAGCTCAAAGAAA+GGG - chr6_2:78971005-78971024 Msa0930160:CDS 45.0%
TGCACTCAGCTCAAAGAAAG+GGG - chr6_2:78971006-78971025 Msa0930160:CDS 45.0%
AGCTCAAAGAAAGGGGAAAG+TGG - chr6_2:78971013-78971032 Msa0930160:CDS 45.0%
GCTCAAAGAAAGGGGAAAGT+GGG - chr6_2:78971014-78971033 Msa0930160:CDS 45.0%
CTGCTATTCCACTTGAGGAT+TGG - chr6_2:78971053-78971072 Msa0930160:CDS 45.0%
! GATATTGGTTGTCCAACTGC+GGG - chr6_2:78971153-78971172 Msa0930160:CDS 45.0%
GCATGAATAAGCACCATCGT+AGG + chr6_2:78971211-78971230 None:intergenic 45.0%
!! CATATGGGTTGGGAAAAGCA+GGG - chr6_2:78971383-78971402 Msa0930160:CDS 45.0%
TTGGGAAAAGCAGGGAAGAA+AGG - chr6_2:78971391-78971410 Msa0930160:CDS 45.0%
TGGGAAAAGCAGGGAAGAAA+GGG - chr6_2:78971392-78971411 Msa0930160:CDS 45.0%
GTGACGAAATACTCCATAGC+AGG + chr6_2:78971444-78971463 None:intergenic 45.0%
CTTGACATCGGGATTTCTCA+TGG + chr6_2:78971494-78971513 None:intergenic 45.0%
GATGGAACAGGAGTTGTTCG+TGG + chr6_2:78969033-78969052 None:intergenic 50.0%
!! CTTTGGTCTTGATCGCCATG+GGG + chr6_2:78969139-78969158 None:intergenic 50.0%
!! GCTTTGGTCTTGATCGCCAT+GGG + chr6_2:78969140-78969159 None:intergenic 50.0%
!! AGCTTTGGTCTTGATCGCCA+TGG + chr6_2:78969141-78969160 None:intergenic 50.0%
GCGATCAAGACCAAAGCTTG+AGG - chr6_2:78969143-78969162 Msa0930160:CDS 50.0%
GACAGAAACCAAAGAGGTGG+TGG - chr6_2:78969179-78969198 Msa0930160:CDS 50.0%
GTCCGTTCATGGAAGAAGGA+AGG + chr6_2:78969341-78969360 None:intergenic 50.0%
!! GGCTAGTCTTAGTCCGTTCA+TGG + chr6_2:78969352-78969371 None:intergenic 50.0%
AGCCGTTTGCGTTAGGAAGA+AGG - chr6_2:78969368-78969387 Msa0930160:CDS 50.0%
GCTCCTTGTGAAACACGTGA+TGG + chr6_2:78969423-78969442 None:intergenic 50.0%
TGCTGTTGATGCTCAAGAGC+TGG - chr6_2:78969545-78969564 Msa0930160:CDS 50.0%
! TCTAGGACTAGGCACACTGA+AGG + chr6_2:78969850-78969869 None:intergenic 50.0%
! TGGCAGTGCCATTCAAGGAA+TGG - chr6_2:78969917-78969936 Msa0930160:CDS 50.0%
AGAGAAACCGGTTGCAGATG+AGG - chr6_2:78970121-78970140 Msa0930160:CDS 50.0%
GGTTGCAGATGAGGTTGTGA+AGG - chr6_2:78970130-78970149 Msa0930160:CDS 50.0%
GAGGAGGATCAAGACAGCAA+AGG - chr6_2:78970338-78970357 Msa0930160:CDS 50.0%
TCCTCCATCTTCCGGAGAAT+CGG + chr6_2:78970414-78970433 None:intergenic 50.0%
TCGGATTCTCCTCCATCTTC+CGG + chr6_2:78970422-78970441 None:intergenic 50.0%
TTCTGACCTCGGTAAAGGCT+TGG - chr6_2:78970451-78970470 Msa0930160:CDS 50.0%
TCTGACCTCGGTAAAGGCTT+GGG - chr6_2:78970452-78970471 Msa0930160:CDS 50.0%
GCATCGCATGAATCCGTAAG+TGG - chr6_2:78970593-78970612 Msa0930160:CDS 50.0%
CGTCGTACAAGGTAGGAACA+AGG - chr6_2:78970751-78970770 Msa0930160:CDS 50.0%
GGCTTCTGCTATTCCACTTG+AGG - chr6_2:78971048-78971067 Msa0930160:CDS 50.0%
AGAAGTTGGAGGACCTACGA+TGG - chr6_2:78971195-78971214 Msa0930160:CDS 50.0%
TGCAACACGTTCTGGCACAA+AGG - chr6_2:78971228-78971247 Msa0930160:CDS 50.0%
GCAACACGTTCTGGCACAAA+GGG - chr6_2:78971229-78971248 Msa0930160:CDS 50.0%
CAACACGTTCTGGCACAAAG+GGG - chr6_2:78971230-78971249 Msa0930160:CDS 50.0%
AACACGTTCTGGCACAAAGG+GGG - chr6_2:78971231-78971250 Msa0930160:CDS 50.0%
GTAACAAGCATGCATGTGGG+TGG - chr6_2:78971280-78971299 Msa0930160:CDS 50.0%
!! GCATATGGGTTGGGAAAAGC+AGG - chr6_2:78971382-78971401 Msa0930160:CDS 50.0%
CAAAGGGACAAGACCTGCTA+TGG - chr6_2:78971428-78971447 Msa0930160:CDS 50.0%
GAGTATTTCGTCACGGATCG+TGG - chr6_2:78971450-78971469 Msa0930160:CDS 50.0%
AGCTGTTCTTCGAGCTGTGG+TGG + chr6_2:78968998-78969017 None:intergenic 55.0%
GGAAGCTGTTCTTCGAGCTG+TGG + chr6_2:78969001-78969020 None:intergenic 55.0%
ATGGGGACAAGGACATGCGA+CGG + chr6_2:78969122-78969141 None:intergenic 55.0%
TCTTGATCGCCATGGGGACA+AGG + chr6_2:78969133-78969152 None:intergenic 55.0%
GCCAACAAGGTGCACGAGTT+AGG - chr6_2:78969625-78969644 Msa0930160:CDS 55.0%
GCCTAACTCGTGCACCTTGT+TGG + chr6_2:78969629-78969648 None:intergenic 55.0%
AAGGTGCACGAGTTAGGCAG+TGG - chr6_2:78969631-78969650 Msa0930160:CDS 55.0%
AGGTGCACGAGTTAGGCAGT+GGG - chr6_2:78969632-78969651 Msa0930160:CDS 55.0%
TGACAAGCAGAAACGACGCG+TGG - chr6_2:78969871-78969890 Msa0930160:CDS 55.0%
! GAAGGTGGCAGTGCCATTCA+AGG - chr6_2:78969912-78969931 Msa0930160:CDS 55.0%
!! TGAAGGGCATGCCGATTCTC+CGG - chr6_2:78970400-78970419 Msa0930160:CDS 55.0%
!! CATGCCGATTCTCCGGAAGA+TGG - chr6_2:78970407-78970426 Msa0930160:CDS 55.0%
CACAACCCAAGCCTTTACCG+AGG + chr6_2:78970460-78970479 None:intergenic 55.0%
! CGGTAAAGGCTTGGGTTGTG+TGG - chr6_2:78970460-78970479 Msa0930160:CDS 55.0%
GTCTCATTGGATCCCGCAGT+TGG + chr6_2:78971168-78971187 None:intergenic 55.0%
TTCTGGCACAAAGGGGGCTA+AGG - chr6_2:78971237-78971256 Msa0930160:CDS 55.0%
CACGGATCGTGGCTGATATG+TGG - chr6_2:78971461-78971480 Msa0930160:CDS 55.0%
AAGGACATGCGACGGGATCG+AGG + chr6_2:78969114-78969133 None:intergenic 60.0%
TGGGGACAAGGACATGCGAC+GGG + chr6_2:78969121-78969140 None:intergenic 60.0%
GTCGCATGTCCTTGTCCCCA+TGG - chr6_2:78969121-78969140 Msa0930160:CDS 60.0%
! GCCGATTCTCCGGAAGATGG+AGG - chr6_2:78970410-78970429 Msa0930160:CDS 60.0%
ATCGCGTCAGCCGTCGTACA+AGG - chr6_2:78970740-78970759 Msa0930160:CDS 60.0%
CGTCAGCCGTCGTACAAGGT+AGG - chr6_2:78970744-78970763 Msa0930160:CDS 60.0%
AGAAACTATGCGGGCAGCGC+TGG + chr6_2:78970789-78970808 None:intergenic 60.0%
TGGCACAAAGGGGGCTAAGG+AGG - chr6_2:78971240-78971259 Msa0930160:CDS 60.0%
CACAAAGGGGGCTAAGGAGG+AGG - chr6_2:78971243-78971262 Msa0930160:CDS 60.0%
GGGCTAAGGAGGAGGAGAAG+AGG - chr6_2:78971251-78971270 Msa0930160:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 78968910 78971525 78968910 ID=Msa0930160;Name=Msa0930160
chr6_2 mRNA 78968910 78971525 78968910 ID=Msa0930160-mRNA-1;Parent=Msa0930160;Name=Msa0930160-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|871
chr6_2 exon 78968910 78971525 78968910 ID=Msa0930160-mRNA-1:exon:13458;Parent=Msa0930160-mRNA-1
chr6_2 CDS 78968910 78971525 78968910 ID=Msa0930160-mRNA-1:cds;Parent=Msa0930160-mRNA-1
Gene Sequence

>Msa0930160

ATGGCAGATGCCAAGAACAATCCCAATGCTCAGATTCTTGAAGAACTAGAGGCTCTGAGTGAAACCCTCTACAAATCACACACATCCACCACAGCTCGAAGAACAGCTTCCCTTGTTTTGCCACGAACAACTCCTGTTCCATCCATTGAAGATCACAATGACAATCACGCAACCGAAGTTTACAGTGAAAGCAGTAACAAACCTCGATCCCGTCGCATGTCCTTGTCCCCATGGCGATCAAGACCAAAGCTTGAGGATGGAATTTCCAAGACAGAAACCAAAGAGGTGGTGGTTAACACATCAACAACTAATTTGGGAGAGAATGAGAAGAAAGGGATTTGGAAGTGGAAGCCGATGCGTGCACTTTCACATATTGGAATGCAGAAACTAAGCTGTTTGTTCTCTGTTGAAGTGGTAGCTGCTCAAGACCTTCCTTCTTCCATGAACGGACTAAGACTAGCCGTTTGCGTTAGGAAGAAGGAAACAAAGGATGGTGCTGTTAAGACAATGCCATCACGTGTTTCACAAGGAGCTGCTGATTTCGAAGAGACACTTTTCATCAAGTGCCATGCTTATTATACCAACAACAATCATGAGAAGAAGTTTGAGCCACGTCCCTTTTCAATTTATCTTTTTGCTGTTGATGCTCAAGAGCTGGATTTTGGAAGAAGCTATGTGGATTTGAGCGAGTTGATTCGAGAGTCCGTTGAGAAAAGCCAACAAGGTGCACGAGTTAGGCAGTGGGATACGAGCTTCAAGTTATCTGGAAAGGCGAAAGGAGGAGAACTTGTTGTGAAACTTGGTTTTCAGATTGTGGAGAAAGATGGAGGAGTTGATATATACAATAATACAAATAACAATAGTCCAATGCAGAATTCAAAGTCCAGCAAGTTGAGTAGTTTGTCATCTTCCTTCGCACGCAAACAATCCAAATCATCCTTCAGTGTGCCTAGTCCTAGAATGACAAGCAGAAACGACGCGTGGACTCCTTCACATTCACATGAAGGTGGCAGTGCCATTCAAGGAATGGATGATTTGAATCTTGATGACCCAAATCCAGTTCATGATTCCTCTTCTTCTGTCCAGAAAGTTGATGACCACATAGAACAAGTGGAGGATTTTGATCTTCCGGATTTTGAGGTAGTTGATAAAGGGATTGAGGTTCAAGAGAAGGAAGAAGATGAAGGTGAGGAATCTGATAAAACCATAGAAGAGAAACCGGTTGCAGATGAGGTTGTGAAGGAAGTAGTGCACGATCATGTGCACCATGCTAGATTGTCTGAGCTTGATTCAATTGCTCAACAAATAAAAGCTCTTGAGTCTATGATGGGAGATGATGGAATTAATAATTCAATGAAAATAGAGGAAGAGACGGAATCATTGGATGCAGATGAAGAAACTGTGACTAGGGAGTTTCTTCAGATGCTTGAGGAGGATCAAGACAGCAAAGGATACTTATTCGACCAACCTGAAATTCCACCTTTACAACTTGAAGGGCATGCCGATTCTCCGGAAGATGGAGGAGAATCCGAAGTATATCTTTCTGACCTCGGTAAAGGCTTGGGTTGTGTGGTTCAAACAAGAGATGGCGGATACTTGGCTTCCATGAATCCTTTGGATGTTGTTGTGGCTAGAAAAGATACCCCAAAGCTAGCAATGCAGATGTCAAAGCCTTTTGTGTTGGCATCGCATGAATCCGTAAGTGGGTTTGACTTGTTTCAGAAATTGGCTGGCATTGGTCTTGATGAACTCGGCTCTCTAATTTTATCCTCCTTGATGCCGATAGATGAACTGATGGGAAAAACTGCAGAGCAGATTGCTTTTGAAGGCATCGCGTCAGCCGTCGTACAAGGTAGGAACAAGGAAGGAGCAAGTTCCAGCGCTGCCCGCATAGTTTCTGCATTGAAAAGCATGTCAAACATTATCAGTTCAGGAAGGAGAGAACGAATATCAACAGGACTTTGGAATGTTGATGAAAATCCAGTTACTTCAGAGAAGCTTCTTGCTATATCAATGCAGAAGATTGAATCCATGGCAGTTGAGGCATTGAAAATTCAAGCTGACGTGGCCGAAGAAGAAGCTCCATTCGATGTTTCTGCACTCAGCTCAAAGAAAGGGGAAAGTGGGAAAGATCTTTTGGCTTCTGCTATTCCACTTGAGGATTGGATTAGAGACCAAAGCTTAAGCTACAACAAAGGTACTGCAACTGCAAGTTCTAATGGTGAACCTGAAAGAGTCACGCTGATATTGGTTGTCCAACTGCGGGATCCAATGAGACGATATGAAGAAGTTGGAGGACCTACGATGGTGCTTATTCATGCAACACGTTCTGGCACAAAGGGGGCTAAGGAGGAGGAGAAGAGGTTCAAAGTAACAAGCATGCATGTGGGTGGTTTCAAAGTTAGGAGTTCCACAAATAAGAATGCATGGGACAATGAGAAGCAAAGACTAACTGCAATGCAATGGTTAGTTGCATATGGGTTGGGAAAAGCAGGGAAGAAAGGGAAGAAGACATTGACAAAGGGACAAGACCTGCTATGGAGTATTTCGTCACGGATCGTGGCTGATATGTGGCTCAAAACCATGAGAAATCCCGATGTCAAGCTTGTAAAGTGA
Protein sequence

>Msa0930160

MADAKNNPNAQILEELEALSETLYKSHTSTTARRTASLVLPRTTPVPSIEDHNDNHATEVYSESSNKPRSRRMSLSPWRSRPKLEDGISKTETKEVVVNTSTTNLGENEKKGIWKWKPMRALSHIGMQKLSCLFSVEVVAAQDLPSSMNGLRLAVCVRKKETKDGAVKTMPSRVSQGAADFEETLFIKCHAYYTNNNHEKKFEPRPFSIYLFAVDAQELDFGRSYVDLSELIRESVEKSQQGARVRQWDTSFKLSGKAKGGELVVKLGFQIVEKDGGVDIYNNTNNNSPMQNSKSSKLSSLSSSFARKQSKSSFSVPSPRMTSRNDAWTPSHSHEGGSAIQGMDDLNLDDPNPVHDSSSSVQKVDDHIEQVEDFDLPDFEVVDKGIEVQEKEEDEGEESDKTIEEKPVADEVVKEVVHDHVHHARLSELDSIAQQIKALESMMGDDGINNSMKIEEETESLDADEETVTREFLQMLEEDQDSKGYLFDQPEIPPLQLEGHADSPEDGGESEVYLSDLGKGLGCVVQTRDGGYLASMNPLDVVVARKDTPKLAMQMSKPFVLASHESVSGFDLFQKLAGIGLDELGSLILSSLMPIDELMGKTAEQIAFEGIASAVVQGRNKEGASSSAARIVSALKSMSNIISSGRRERISTGLWNVDENPVTSEKLLAISMQKIESMAVEALKIQADVAEEEAPFDVSALSSKKGESGKDLLASAIPLEDWIRDQSLSYNKGTATASSNGEPERVTLILVVQLRDPMRRYEEVGGPTMVLIHATRSGTKGAKEEEKRFKVTSMHVGGFKVRSSTNKNAWDNEKQRLTAMQWLVAYGLGKAGKKGKKTLTKGQDLLWSISSRIVADMWLKTMRNPDVKLVK*