AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0284260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0284260 MtrunA17_Chr2g0299721 88.346 532 14 3 1 485 1 531 0.0 956
Msa0284260 MtrunA17_Chr7g0256421 35.840 399 194 10 120 466 94 482 2.71e-69 229
Msa0284260 MtrunA17_Chr2g0321641 35.766 411 200 10 111 466 81 482 3.24e-66 221
Msa0284260 MtrunA17_Chr2g0321661 34.314 408 204 11 111 467 77 471 4.80e-62 210
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0284260 AT5G57030.1 66.229 533 123 5 1 485 1 524 0.0 696
Msa0284260 AT3G10230.1 33.408 446 232 9 73 466 50 482 5.41e-69 229
Msa0284260 AT3G10230.2 32.402 358 184 7 159 466 1 350 1.20e-51 179

Find 116 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGACATTCTTAAGTTATT+TGG 0.177728 2_3:+22125557 None:intergenic
ATTTCAATTGGACGTTCTTA+TGG 0.245863 2_3:-22128755 Msa0284260:CDS
GCAAGGGACATTATTACTTA+TGG 0.259775 2_3:-22126701 Msa0284260:CDS
GGAACCTTAATAGAGTTTAT+AGG 0.296541 2_3:-22125404 Msa0284260:three_prime_UTR
TCTTGTTAGGTACCCTGTAT+TGG 0.297570 2_3:-22125448 Msa0284260:three_prime_UTR
GTACTAGATCTAGTCGTTAT+TGG 0.302963 2_3:-22129345 Msa0284260:CDS
GGATTAAAAGTTGGACTTAT+TGG 0.306867 2_3:-22129276 Msa0284260:CDS
CTTGTTAGGTACCCTGTATT+GGG 0.312888 2_3:-22125447 Msa0284260:three_prime_UTR
GTTGCATCAGGAGCAGCTTC+AGG 0.332490 2_3:-22128316 Msa0284260:CDS
ATAACCTATAAACTCTATTA+AGG 0.336233 2_3:+22125400 None:intergenic
GCAATCTAAGCTTGCGGATA+AGG 0.338114 2_3:-22131335 Msa0284260:intron
TAAGGAGAAAGAAGATTTGT+TGG 0.345414 2_3:-22131549 Msa0284260:CDS
GTGTGTGTGCAAACAGCTTA+TGG 0.354505 2_3:-22128259 Msa0284260:CDS
CTTGCTCTAGCTGCTGAATC+TGG 0.361407 2_3:-22129306 Msa0284260:CDS
GTGTGGGAGGACGAATTTAA+AGG 0.371750 2_3:-22129222 Msa0284260:intron
CAGTTGCCACCTATCTCTAT+TGG 0.372211 2_3:-22129375 Msa0284260:CDS
AGGTTCTTCTGTTCTGTGTT+TGG 0.372287 2_3:+22126921 None:intergenic
GCTGCTGAATCTGGCAAGTT+AGG 0.372390 2_3:-22129297 Msa0284260:CDS
AGGATGTGGCAAGGATTTCT+TGG 0.374365 2_3:-22125638 Msa0284260:CDS
ATTTGATTACCTCGCATTGA+TGG 0.374576 2_3:+22126662 None:intergenic
GCTGAGTTTCTTCAACACTA+TGG 0.377942 2_3:-22131685 Msa0284260:five_prime_UTR
AACTATTGCAGTATGAGGTT+GGG 0.384949 2_3:-22128291 Msa0284260:CDS
GCTGTTTGCACACACACCTT+TGG 0.395248 2_3:+22128265 None:intergenic
TAAGTCCTTCTTTGCGGTTA+AGG 0.395321 2_3:-22131567 Msa0284260:CDS
CTCCCTTTCACAAACAACTA+TGG 0.400540 2_3:-22129246 Msa0284260:CDS
TCTAGCCTGTCTCCCAATAC+AGG 0.402133 2_3:+22125435 None:intergenic
GAGACAGGCTAGATTACATT+AGG 0.406678 2_3:-22125425 Msa0284260:three_prime_UTR
TTTGGTAAGGATCCACCAAC+TGG 0.407219 2_3:+22126939 None:intergenic
CTCTGTTGTGAGATCGTTGT+CGG 0.407519 2_3:-22126774 Msa0284260:CDS
AAGGTTGTATTGAGCATGTT+TGG 0.411470 2_3:-22128814 Msa0284260:CDS
ATTTCAGGTCTTGGACTTGA+AGG 0.411475 2_3:-22128833 Msa0284260:intron
CTTCTGTTCTGTGTTTGGTA+AGG 0.411856 2_3:+22126926 None:intergenic
AGGCTTGTTACTGTTGCATC+AGG 0.414531 2_3:-22128328 Msa0284260:CDS
TTTCAGCTTGGAATAAACTT+TGG 0.415293 2_3:-22126412 Msa0284260:intron
GAGTCAGGTGTCTCGTATCT+TGG 0.416251 2_3:-22128572 Msa0284260:CDS
TTCCCTAGGTGTGTCGAGTC+AGG 0.420699 2_3:-22128587 Msa0284260:intron
TCCATGAAAACCATCACGTT+TGG 0.421212 2_3:+22127836 None:intergenic
ACCATCACGTTTGGATCATA+AGG 0.427701 2_3:+22127845 None:intergenic
GATCTAGTCGTTATTGGTTG+TGG 0.430410 2_3:-22129339 Msa0284260:CDS
TTTGCATAAGTCCTTCTTTG+CGG 0.434401 2_3:-22131573 Msa0284260:CDS
AAACTATTGCAGTATGAGGT+TGG 0.434728 2_3:-22128292 Msa0284260:CDS
TAAGAACGTCCAATTGAAAT+CGG 0.444751 2_3:+22128758 None:intergenic
CTCTGTCGTTTCCTTTCTTG+TGG 0.445396 2_3:+22126389 None:intergenic
GAACAGAAGAACCTTGCATT+TGG 0.452985 2_3:-22126912 Msa0284260:intron
ACTCCATCTCCAATAGAGAT+AGG 0.454988 2_3:+22129366 None:intergenic
CTTCGTCGAACGCAACAATT+CGG 0.458295 2_3:-22131513 Msa0284260:CDS
ATTAGCACTAATTGTTCAGC+TGG 0.466025 2_3:-22126348 Msa0284260:CDS
GGCATTGCATAAAGAAATGT+TGG 0.467739 2_3:+22127764 None:intergenic
CACCATAGTTGTTTGTGAAA+GGG 0.468395 2_3:+22129244 None:intergenic
TTCACGAAGAATTGTTAAGA+AGG 0.473016 2_3:-22128712 Msa0284260:intron
ATAAACTTTGGCCACAAGAA+AGG 0.473197 2_3:-22126400 Msa0284260:CDS
TTGCATCAGGAGCAGCTTCA+GGG 0.474105 2_3:-22128315 Msa0284260:CDS
TATTACTTATGGAAGAAGTA+AGG 0.477112 2_3:-22126690 Msa0284260:CDS
AGGGAAACTATTGCAGTATG+AGG 0.481433 2_3:-22128296 Msa0284260:CDS
GTTATTGGTTGTGGTCCTGC+TGG 0.481480 2_3:-22129330 Msa0284260:CDS
GAGTTGTGTTGTTGCTAAAG+AGG 0.481683 2_3:-22131443 Msa0284260:CDS
GCAGCTAGAGCAAGACCAGC+AGG 0.483198 2_3:+22129315 None:intergenic
TGTGTGTGCAAACAGCTTAT+GGG 0.485667 2_3:-22128258 Msa0284260:CDS
TCATACAAAAGTGTTCTTTG+AGG 0.486804 2_3:-22127735 Msa0284260:intron
GACGTCGTCGTTTAACTGCT+TGG 0.489289 2_3:+22131660 None:intergenic
ACTATTGCAGTATGAGGTTG+GGG 0.493808 2_3:-22128290 Msa0284260:CDS
ATTGTTCAGCTGGACATTGA+AGG 0.495105 2_3:-22126338 Msa0284260:CDS
AAAAGTTGGACTTATTGGTC+CGG 0.495439 2_3:-22129271 Msa0284260:CDS
ATGATACTGTAGTGCCCTGC+AGG 0.496002 2_3:-22128490 Msa0284260:intron
AATGCGAAAGCAGGTGGTGC+AGG 0.499971 2_3:-22131472 Msa0284260:CDS
TTTCTCCTTAACCGCAAAGA+AGG 0.501398 2_3:+22131562 None:intergenic
CGTTGGAGCGAGAAACTTAA+CGG 0.502128 2_3:-22131605 Msa0284260:CDS
CATCTGCTTTCAGATCCTAC+AGG 0.507194 2_3:-22125527 Msa0284260:CDS
GGTACCCTGTATTGGGAGAC+AGG 0.508224 2_3:-22125440 Msa0284260:three_prime_UTR
GGCAAGTTAGGATTAAAAGT+TGG 0.508773 2_3:-22129285 Msa0284260:CDS
AGCTTATGGGGTGGAAGTTG+AGG 0.509754 2_3:-22128245 Msa0284260:intron
TTGTTTGTGAAAGGGAGATC+CGG 0.515364 2_3:+22129252 None:intergenic
TTGTATTGAGCATGTTTGGA+AGG 0.520513 2_3:-22128810 Msa0284260:CDS
CCACCTATCTCTATTGGAGA+TGG 0.520907 2_3:-22129369 Msa0284260:CDS
ACACCATAGTTGTTTGTGAA+AGG 0.521405 2_3:+22129243 None:intergenic
TGTTGAAACGACGACGTAGA+TGG 0.526248 2_3:+22131720 None:intergenic
CAGGTAAGCAGAAGAAAGTA+CGG 0.527877 2_3:+22126300 None:intergenic
ATGAAAGTGAATGCGAAAGC+AGG 0.541648 2_3:-22131481 Msa0284260:CDS
TTCGTTACAATGGAGTGCGT+TGG 0.541968 2_3:-22131622 Msa0284260:exon
ATCTTGGCTCAAAAGTAGAA+AGG 0.551209 2_3:-22128556 Msa0284260:CDS
AACACTGATCTTCGTTACAA+TGG 0.551274 2_3:-22131632 Msa0284260:exon
GTTCTTATGGCCGTGTCAGT+CGG 0.553276 2_3:-22128742 Msa0284260:CDS
CTTTCTTCTGCTTACCTGAG+TGG 0.554996 2_3:-22126295 Msa0284260:intron
TGGTCTTATATCCCAGTTGG+TGG 0.561768 2_3:-22126951 Msa0284260:CDS
AGCGAGAAACTTAACGGCAA+TGG 0.580164 2_3:-22131599 Msa0284260:CDS
CACAAACAACTATGGTGTGT+GGG 0.580409 2_3:-22129238 Msa0284260:CDS
CACACGTACAACACAGCACA+AGG 0.580909 2_3:+22125319 None:intergenic
TGGCAGCTGCACCAAATGCA+AGG 0.586864 2_3:+22126901 None:intergenic
AGAGGATTATGCTGATGAAG+AGG 0.595984 2_3:-22131425 Msa0284260:CDS
TTTATCATAGTTGACCCTGT+AGG 0.596255 2_3:+22125512 None:intergenic
TCCTTATGATCCAAACGTGA+TGG 0.596727 2_3:-22127846 Msa0284260:CDS
GAAGCAAATGCCGACTGACA+CGG 0.598268 2_3:+22128732 None:intergenic
AACGTACTATATCGTCAAGT+AGG 0.606795 2_3:+22125487 None:intergenic
TCACAAACAACTATGGTGTG+TGG 0.608110 2_3:-22129239 Msa0284260:CDS
TTTATTATCAATATATACAA+CGG 0.613565 2_3:+22128784 None:intergenic
GAATGGTCTTATATCCCAGT+TGG 0.614473 2_3:-22126954 Msa0284260:CDS
TTTGAATGACGGTAATGCAA+GGG 0.614670 2_3:-22126717 Msa0284260:CDS
CTAGCCTGTCTCCCAATACA+GGG 0.617031 2_3:+22125436 None:intergenic
AGGATTGTTGAGGCTAGCAA+TGG 0.625598 2_3:-22128536 Msa0284260:CDS
ATCTGCTTTCAGATCCTACA+GGG 0.639178 2_3:-22125526 Msa0284260:CDS
GAAACGACGACGTAGATGGT+TGG 0.640536 2_3:+22131724 None:intergenic
TTGGTAAGGATCCACCAACT+GGG 0.640890 2_3:+22126940 None:intergenic
AAAAGTAGAAAGGATTGTTG+AGG 0.645770 2_3:-22128546 Msa0284260:CDS
GAAAATAGACCATACCACTC+AGG 0.646689 2_3:+22126281 None:intergenic
GTGTGTGCAAACAGCTTATG+GGG 0.647388 2_3:-22128257 Msa0284260:CDS
GGATATGCAATCTAAGCTTG+CGG 0.648233 2_3:-22131341 Msa0284260:CDS
AATACAGGGTACCTAACAAG+AGG 0.648747 2_3:+22125450 None:intergenic
GCAATTACTGAAGCATATTG+CGG 0.648771 2_3:+22126746 None:intergenic
GCATGCAAATCATACCTGCA+GGG 0.656014 2_3:+22128476 None:intergenic
AAGGAGAATCCATCAATGCG+AGG 0.669695 2_3:-22126671 Msa0284260:intron
CCATCTCCAATAGAGATAGG+TGG 0.670865 2_3:+22129369 None:intergenic
AAACAACTATGGTGTGTGGG+AGG 0.673871 2_3:-22129235 Msa0284260:CDS
AAACAATAGAAGATCTCTCG+AGG 0.702047 2_3:+22125604 None:intergenic
AAAGTGAATGCGAAAGCAGG+TGG 0.705389 2_3:-22131478 Msa0284260:CDS
TGTGCAAACAGCTTATGGGG+TGG 0.724137 2_3:-22128254 Msa0284260:CDS
CTATTGCAGTATGAGGTTGG+GGG 0.774566 2_3:-22128289 Msa0284260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTTAATCAAAAAATAA+AGG + chr2_3:22126327-22126346 None:intergenic 10.0%
!! TTTATTATCAATATATACAA+CGG + chr2_3:22128288-22128307 None:intergenic 10.0%
!! AAAAAGATAGTAAAAATATA+AGG + chr2_3:22129006-22129025 None:intergenic 10.0%
!!! TTTTTCTTTAATAAATCAAA+AGG + chr2_3:22129472-22129491 None:intergenic 10.0%
!! GAAGTTTCAATATATAATAA+GGG + chr2_3:22128707-22128726 None:intergenic 15.0%
!! AGAAGTTTCAATATATAATA+AGG + chr2_3:22128708-22128727 None:intergenic 15.0%
!!! AAATATTTTCACAAAGTAAA+CGG + chr2_3:22128949-22128968 None:intergenic 15.0%
!! ATTAAATGTATAAAATGTGA+TGG - chr2_3:22129142-22129161 Msa0284260:intron 15.0%
!! AAAAAAATTAAGCAATAAGA+TGG + chr2_3:22131352-22131371 None:intergenic 15.0%
!!! TTAATTTTTTTCACACTTTT+GGG - chr2_3:22131361-22131380 Msa0284260:CDS 15.0%
!! AAGTTACATGAATATGATAT+TGG - chr2_3:22126015-22126034 Msa0284260:intron 20.0%
!! GCAATTAAAATTGAGTTTAA+TGG + chr2_3:22126079-22126098 None:intergenic 20.0%
!!! TATAACATTTTGAGCTTAAT+TGG + chr2_3:22126201-22126220 None:intergenic 20.0%
!! AAATGTAAAGAACAATGTTA+TGG - chr2_3:22126342-22126361 Msa0284260:CDS 20.0%
!! TATGTTCTGTCAATTTAAAA+TGG - chr2_3:22126453-22126472 Msa0284260:intron 20.0%
!! GTGTAGATATTTGAATTATA+TGG - chr2_3:22126563-22126582 Msa0284260:intron 20.0%
!! TTAAATTATTAAGGATGGAA+TGG - chr2_3:22127112-22127131 Msa0284260:intron 20.0%
!!! AAATGTGCTTTTTAAACATA+TGG - chr2_3:22127242-22127261 Msa0284260:intron 20.0%
!!! GAAAATATATACTGTTTTCA+AGG + chr2_3:22128147-22128166 None:intergenic 20.0%
!! AATAAAAATCCGATTTCAAT+TGG - chr2_3:22128302-22128321 Msa0284260:CDS 20.0%
!!! TTATTTCTGAATTAACTTCT+TGG - chr2_3:22128412-22128431 Msa0284260:intron 20.0%
!! ATGAATTACAAATCTACAAA+AGG + chr2_3:22128455-22128474 None:intergenic 20.0%
!!! AATTCATATTAATTTTCCCT+AGG - chr2_3:22128468-22128487 Msa0284260:intron 20.0%
!!! ATAGAAATGTTTTCAAAAAG+TGG - chr2_3:22128974-22128993 Msa0284260:intron 20.0%
!! TTATCAAGATTAAATACGAT+GGG - chr2_3:22129496-22129515 Msa0284260:intron 20.0%
!! ATGGTTCTTTCTAAATTATA+TGG - chr2_3:22129673-22129692 Msa0284260:intron 20.0%
!! TGGTTCTTTCTAAATTATAT+GGG - chr2_3:22129674-22129693 Msa0284260:intron 20.0%
!!! TTTTATCTTCAAATTTGTGT+AGG - chr2_3:22130093-22130112 Msa0284260:intron 20.0%
!!! AAAAAAGTAAGCATAGTTTT+CGG + chr2_3:22130487-22130506 None:intergenic 20.0%
!!! CATATATGTCATAGATATTT+TGG - chr2_3:22130814-22130833 Msa0284260:intron 20.0%
!! AATACCAATTCTATGTTATT+TGG - chr2_3:22130955-22130974 Msa0284260:intron 20.0%
!! TTATCCAAATAACATAGAAT+TGG + chr2_3:22130962-22130981 None:intergenic 20.0%
!!! ATTCTATGTTATTTGGATAA+TGG - chr2_3:22130962-22130981 Msa0284260:intron 20.0%
!! TGTGAAAAATCTAATATGAA+TGG - chr2_3:22131114-22131133 Msa0284260:intron 20.0%
!! GTGAAAAATCTAATATGAAT+GGG - chr2_3:22131115-22131134 Msa0284260:intron 20.0%
!!! GTTATGGTTTTTAGTAAAAA+GGG + chr2_3:22131240-22131259 None:intergenic 20.0%
!!! TGTTATGGTTTTTAGTAAAA+AGG + chr2_3:22131241-22131260 None:intergenic 20.0%
!!! CTTAATTTTTTTCACACTTT+TGG - chr2_3:22131360-22131379 Msa0284260:CDS 20.0%
!! ATAACCTATAAACTCTATTA+AGG + chr2_3:22131672-22131691 None:intergenic 20.0%
! ATTTAATTAGTATACTCTGC+TGG - chr2_3:22125853-22125872 Msa0284260:intron 25.0%
! ACAATGTTATGGAATTACTT+TGG - chr2_3:22126353-22126372 Msa0284260:CDS 25.0%
!! TGATTATTAATGAGAGTACA+AGG - chr2_3:22126799-22126818 Msa0284260:intron 25.0%
!! GATTATTAATGAGAGTACAA+GGG - chr2_3:22126800-22126819 Msa0284260:intron 25.0%
!! ATTATTAATGAGAGTACAAG+GGG - chr2_3:22126801-22126820 Msa0284260:intron 25.0%
! TCCATCCTTAATAATTTAAC+TGG + chr2_3:22127111-22127130 None:intergenic 25.0%
! TCAAGTATTACATGATACTT+GGG - chr2_3:22127266-22127285 Msa0284260:intron 25.0%
! AGTTCATTGCTTGAAAAAAA+TGG + chr2_3:22127476-22127495 None:intergenic 25.0%
! ATTAGAAAGATATAGCAAGA+AGG + chr2_3:22127876-22127895 None:intergenic 25.0%
! TCTATGGTTCATAAAAAGAA+GGG + chr2_3:22127976-22127995 None:intergenic 25.0%
! TTCTATGGTTCATAAAAAGA+AGG + chr2_3:22127977-22127996 None:intergenic 25.0%
! TCCATTAAATGAAATCTGTT+AGG + chr2_3:22128048-22128067 None:intergenic 25.0%
!! AACAGTATATATTTTCTTGC+TGG - chr2_3:22128151-22128170 Msa0284260:intron 25.0%
!! ACAGTATATATTTTCTTGCT+GGG - chr2_3:22128152-22128171 Msa0284260:intron 25.0%
! AAATTATAATGAAGTGCACT+TGG + chr2_3:22128220-22128239 None:intergenic 25.0%
!! TTCATTATAATTTCAGGTCT+TGG - chr2_3:22128227-22128246 Msa0284260:intron 25.0%
! AGGGAAGTTTCAATATATTA+TGG + chr2_3:22128646-22128665 None:intergenic 25.0%
! AATATATAATAAGGGAAACC+TGG + chr2_3:22128699-22128718 None:intergenic 25.0%
!! AAATGTTTTCAAAAAGTGGA+AGG - chr2_3:22128978-22128997 Msa0284260:intron 25.0%
!! AATGTTTTCAAAAAGTGGAA+GGG - chr2_3:22128979-22128998 Msa0284260:intron 25.0%
! ATGTTATGTTGTTAAAGACA+AGG + chr2_3:22129098-22129117 None:intergenic 25.0%
! CTTTAATAAATCAAAAGGCA+TGG + chr2_3:22129467-22129486 None:intergenic 25.0%
! CTTATCAAGATTAAATACGA+TGG - chr2_3:22129495-22129514 Msa0284260:intron 25.0%
! TATCAAGATTAAATACGATG+GGG - chr2_3:22129497-22129516 Msa0284260:intron 25.0%
! AGTTACAAAAACTTATGAAG+AGG - chr2_3:22129525-22129544 Msa0284260:intron 25.0%
! AAAAACTTATGAAGAGGTAA+GGG - chr2_3:22129531-22129550 Msa0284260:intron 25.0%
! GTATTATCCTATATGGAAAA+TGG + chr2_3:22129748-22129767 None:intergenic 25.0%
! CAACTAAGTATTATCCTATA+TGG + chr2_3:22129755-22129774 None:intergenic 25.0%
! AAGATATGTAATAGTACGAT+AGG + chr2_3:22129808-22129827 None:intergenic 25.0%
!! ATTGCTACAATTTTGAATGA+CGG - chr2_3:22130341-22130360 Msa0284260:intron 25.0%
! TATTACTTATGGAAGAAGTA+AGG - chr2_3:22130379-22130398 Msa0284260:intron 25.0%
!! ATTTTCTTTTTCTTTCAGCT+TGG - chr2_3:22130645-22130664 Msa0284260:intron 25.0%
! AGAATTGGTATTATGAATTG+TGG + chr2_3:22130947-22130966 None:intergenic 25.0%
! TTTAGTGTTAACAATAAAGC+AGG + chr2_3:22130990-22131009 None:intergenic 25.0%
! TATATAAACACGATAGTACA+AGG - chr2_3:22131068-22131087 Msa0284260:intron 25.0%
! AGTTAATCATCATTCCATTA+TGG + chr2_3:22131399-22131418 None:intergenic 25.0%
! AGAGACATTCTTAAGTTATT+TGG + chr2_3:22131515-22131534 None:intergenic 25.0%
!!! ATAAACTTTTTCCTCTTGTT+AGG - chr2_3:22131608-22131627 Msa0284260:CDS 25.0%
TAAGGAGAAAGAAGATTTGT+TGG - chr2_3:22125520-22125539 Msa0284260:CDS 30.0%
AATGCAACAGAAAAAGTCTA+TGG - chr2_3:22125707-22125726 Msa0284260:intron 30.0%
! AGTTGTTGATTATATCGAGT+TGG - chr2_3:22125786-22125805 Msa0284260:intron 30.0%
! TATTTTACACCTCAAGTTCA+TGG - chr2_3:22126053-22126072 Msa0284260:intron 30.0%
CTAGCTTATTTGAGCTTAAT+TGG + chr2_3:22126118-22126137 None:intergenic 30.0%
AAATGGTGTCTCATTTCTTT+AGG - chr2_3:22126531-22126550 Msa0284260:intron 30.0%
! ATGAAATTGTAGCTCCTTTT+AGG - chr2_3:22126586-22126605 Msa0284260:intron 30.0%
! TGAAATTGTAGCTCCTTTTA+GGG - chr2_3:22126587-22126606 Msa0284260:intron 30.0%
! AAAAAAATTATCGAGTTGCC+AGG - chr2_3:22126620-22126639 Msa0284260:intron 30.0%
! AAAAAATTATCGAGTTGCCA+GGG - chr2_3:22126621-22126640 Msa0284260:intron 30.0%
GAGTAATTTCTATTGTGACA+AGG - chr2_3:22126656-22126675 Msa0284260:intron 30.0%
AATTTCTATTGTGACAAGGA+TGG - chr2_3:22126660-22126679 Msa0284260:intron 30.0%
AAAATTTGATTGTACAGGGT+TGG + chr2_3:22126831-22126850 None:intergenic 30.0%
TCGCAAAATTTGATTGTACA+GGG + chr2_3:22126835-22126854 None:intergenic 30.0%
GGAGTTGTGATTTAAATTTG+AGG - chr2_3:22127002-22127021 Msa0284260:intron 30.0%
TGCAGCCAGTTAAATTATTA+AGG - chr2_3:22127103-22127122 Msa0284260:intron 30.0%
GCCAGTTAAATTATTAAGGA+TGG - chr2_3:22127107-22127126 Msa0284260:intron 30.0%
!!! TGGGACTAATGCATTTTTTA+GGG - chr2_3:22127215-22127234 Msa0284260:intron 30.0%
CTCAAGTATTACATGATACT+TGG - chr2_3:22127265-22127284 Msa0284260:intron 30.0%
CAAGTATTACATGATACTTG+GGG - chr2_3:22127267-22127286 Msa0284260:intron 30.0%
AAGTATTACATGATACTTGG+GGG - chr2_3:22127268-22127287 Msa0284260:intron 30.0%
AACAAGGTATAGATGATTTG+GGG + chr2_3:22127300-22127319 None:intergenic 30.0%
GAACAAGGTATAGATGATTT+GGG + chr2_3:22127301-22127320 None:intergenic 30.0%
AGAACAAGGTATAGATGATT+TGG + chr2_3:22127302-22127321 None:intergenic 30.0%
TTTATTCATAGAAAGAGCCA+TGG + chr2_3:22127327-22127346 None:intergenic 30.0%
!! TCAAGCACAAATTGTCATTT+TGG - chr2_3:22127400-22127419 Msa0284260:intron 30.0%
GGATTAAAAGTTGGACTTAT+TGG - chr2_3:22127793-22127812 Msa0284260:CDS 30.0%
GCCTAACAGATTTCATTTAA+TGG - chr2_3:22128044-22128063 Msa0284260:intron 30.0%
CAAGGACATAAATATCAAAC+TGG + chr2_3:22128129-22128148 None:intergenic 30.0%
GTGCACTTCATTATAATTTC+AGG - chr2_3:22128221-22128240 Msa0284260:intron 30.0%
TAAGAACGTCCAATTGAAAT+CGG + chr2_3:22128314-22128333 None:intergenic 30.0%
ATTTCAATTGGACGTTCTTA+TGG - chr2_3:22128314-22128333 Msa0284260:CDS 30.0%
TTCACGAAGAATTGTTAAGA+AGG - chr2_3:22128357-22128376 Msa0284260:intron 30.0%
AAAAGTAGAAAGGATTGTTG+AGG - chr2_3:22128523-22128542 Msa0284260:CDS 30.0%
AACTTCTGTCCTGTTATTAT+AGG - chr2_3:22128721-22128740 Msa0284260:CDS 30.0%
AGTAACAAGCCTATAATAAC+AGG + chr2_3:22128733-22128752 None:intergenic 30.0%
!!! GGTTTCTAGTGTTTTTATTC+AGG - chr2_3:22128864-22128883 Msa0284260:intron 30.0%
TTAATTGTTGTACTGTACAG+TGG - chr2_3:22128897-22128916 Msa0284260:intron 30.0%
! ATGTTTTCAAAAAGTGGAAG+GGG - chr2_3:22128980-22128999 Msa0284260:intron 30.0%
TATGTTGTTAAAGACAAGGA+AGG + chr2_3:22129094-22129113 None:intergenic 30.0%
! AACACTTTTGTATGAGACAT+GGG + chr2_3:22129329-22129348 None:intergenic 30.0%
!! TCATACAAAAGTGTTCTTTG+AGG - chr2_3:22129334-22129353 Msa0284260:CDS 30.0%
AACAGAACTGCAATACTTAA+TGG + chr2_3:22129391-22129410 None:intergenic 30.0%
CAAAAACTTATGAAGAGGTA+AGG - chr2_3:22129530-22129549 Msa0284260:intron 30.0%
! GCTAGCTGTATTATATTTTG+AGG - chr2_3:22129564-22129583 Msa0284260:intron 30.0%
GTTCCACATAAATTTAGCAA+GGG - chr2_3:22129696-22129715 Msa0284260:intron 30.0%
ATTATACTGGAGAACATTGA+CGG - chr2_3:22129912-22129931 Msa0284260:intron 30.0%
TCTATTATGTAACAGCTCAA+AGG + chr2_3:22129993-22130012 None:intergenic 30.0%
TTGAGCTGTTACATAATAGA+TGG - chr2_3:22129993-22130012 Msa0284260:intron 30.0%
TGAGCTGTTACATAATAGAT+GGG - chr2_3:22129994-22130013 Msa0284260:intron 30.0%
TCTTCAAATTTGTGTAGGAA+TGG - chr2_3:22130098-22130117 Msa0284260:intron 30.0%
! TAATATCGTTTTCGTCCAAT+AGG - chr2_3:22130269-22130288 Msa0284260:intron 30.0%
! AAGCATAGTTTTCGGAATTT+TGG + chr2_3:22130479-22130498 None:intergenic 30.0%
AAAATGTCAGCTCTCAAATT+TGG + chr2_3:22130579-22130598 None:intergenic 30.0%
TTTCAGCTTGGAATAAACTT+TGG - chr2_3:22130657-22130676 Msa0284260:intron 30.0%
! CAGAGATCTTTCTTTCTTTT+TGG - chr2_3:22130698-22130717 Msa0284260:intron 30.0%
!! AGATATTTTGGACTTTGTAG+TGG - chr2_3:22130826-22130845 Msa0284260:intron 30.0%
AGATAGAAGATAGAATGTAG+AGG + chr2_3:22130886-22130905 None:intergenic 30.0%
CTACATTCTATCTTCTATCT+TGG - chr2_3:22130886-22130905 Msa0284260:intron 30.0%
CATAAAGGTTAGTAGTATTC+AGG - chr2_3:22131272-22131291 Msa0284260:intron 30.0%
TATATCACAAGAAAGCAAAC+TGG + chr2_3:22131320-22131339 None:intergenic 30.0%
!! GATTAACTGATTTTTATCGC+AGG - chr2_3:22131411-22131430 Msa0284260:CDS 30.0%
GGAACCTTAATAGAGTTTAT+AGG - chr2_3:22131665-22131684 Msa0284260:five_prime_UTR 30.0%
!!! CTTTTTTGAGAGGGATTGTA+TGG + chr2_3:22125323-22125342 None:intergenic 35.0%
AACACTGATCTTCGTTACAA+TGG - chr2_3:22125437-22125456 Msa0284260:three_prime_UTR 35.0%
TTTGCATAAGTCCTTCTTTG+CGG - chr2_3:22125496-22125515 Msa0284260:CDS 35.0%
! GAAGAGGATTTTGTTAAAGC+TGG - chr2_3:22125660-22125679 Msa0284260:intron 35.0%
TTAAGCTCAAATAAGCTAGC+AGG - chr2_3:22126119-22126138 Msa0284260:intron 35.0%
!! TTTCTAGTTCCATCCCTAAA+AGG + chr2_3:22126603-22126622 None:intergenic 35.0%
! AAAAATTATCGAGTTGCCAG+GGG - chr2_3:22126622-22126641 Msa0284260:intron 35.0%
TATTGTGACAAGGATGGTTA+TGG - chr2_3:22126666-22126685 Msa0284260:intron 35.0%
CTCGCAAAATTTGATTGTAC+AGG + chr2_3:22126836-22126855 None:intergenic 35.0%
TGCGAGATTTAAGAATTCAC+TGG - chr2_3:22126850-22126869 Msa0284260:intron 35.0%
TGGTGTGATATCTCGTAAAA+AGG + chr2_3:22126950-22126969 None:intergenic 35.0%
TCAAGGAGCAATTGCTAATT+GGG + chr2_3:22126974-22126993 None:intergenic 35.0%
TTCAAGGAGCAATTGCTAAT+TGG + chr2_3:22126975-22126994 None:intergenic 35.0%
AATTAGCAATTGCTCCTTGA+AGG - chr2_3:22126974-22126993 Msa0284260:intron 35.0%
AATGGCATGTTACAAAGGTT+AGG - chr2_3:22127130-22127149 Msa0284260:intron 35.0%
ATGGCATGTTACAAAGGTTA+GGG - chr2_3:22127131-22127150 Msa0284260:intron 35.0%
CAAAATTAGCAATTGTGTGC+AGG - chr2_3:22127178-22127197 Msa0284260:intron 35.0%
TGCAGGTTCTATAAAGAAAG+TGG - chr2_3:22127195-22127214 Msa0284260:intron 35.0%
GCAGGTTCTATAAAGAAAGT+GGG - chr2_3:22127196-22127215 Msa0284260:intron 35.0%
!!! GTGGGACTAATGCATTTTTT+AGG - chr2_3:22127214-22127233 Msa0284260:intron 35.0%
!!! GGGACTAATGCATTTTTTAG+GGG - chr2_3:22127216-22127235 Msa0284260:intron 35.0%
GCATTGTTAACTTTCATGCA+CGG - chr2_3:22127445-22127464 Msa0284260:intron 35.0%
GTACTAGATCTAGTCGTTAT+TGG - chr2_3:22127724-22127743 Msa0284260:intron 35.0%
GGCAAGTTAGGATTAAAAGT+TGG - chr2_3:22127784-22127803 Msa0284260:CDS 35.0%
AAAAGTTGGACTTATTGGTC+CGG - chr2_3:22127798-22127817 Msa0284260:CDS 35.0%
CACCATAGTTGTTTGTGAAA+GGG + chr2_3:22127828-22127847 None:intergenic 35.0%
ACACCATAGTTGTTTGTGAA+AGG + chr2_3:22127829-22127848 None:intergenic 35.0%
!! CTCTAAGATCACTGTTTCTA+TGG + chr2_3:22127992-22128011 None:intergenic 35.0%
ATAATGAAGTGCACTTGGTA+AGG + chr2_3:22128215-22128234 None:intergenic 35.0%
AAGGTTGTATTGAGCATGTT+TGG - chr2_3:22128255-22128274 Msa0284260:CDS 35.0%
TTGTATTGAGCATGTTTGGA+AGG - chr2_3:22128259-22128278 Msa0284260:CDS 35.0%
ATCTTGGCTCAAAAGTAGAA+AGG - chr2_3:22128513-22128532 Msa0284260:CDS 35.0%
AAACTATTGCAGTATGAGGT+TGG - chr2_3:22128777-22128796 Msa0284260:CDS 35.0%
AACTATTGCAGTATGAGGTT+GGG - chr2_3:22128778-22128797 Msa0284260:CDS 35.0%
CAGATAAATGTTACCAAGTC+CGG - chr2_3:22129037-22129056 Msa0284260:intron 35.0%
AGATAAATGTTACCAAGTCC+GGG - chr2_3:22129038-22129057 Msa0284260:intron 35.0%
! GAACACTTTTGTATGAGACA+TGG + chr2_3:22129330-22129349 None:intergenic 35.0%
TATAGAGAAATTCCAATCGC+AGG - chr2_3:22129417-22129436 Msa0284260:intron 35.0%
CTAGCAATACACTTTCTAAC+AGG - chr2_3:22129591-22129610 Msa0284260:intron 35.0%
! TCAATTTTCAGCCAATAGGA+GGG + chr2_3:22129633-22129652 None:intergenic 35.0%
! TTCAATTTTCAGCCAATAGG+AGG + chr2_3:22129634-22129653 None:intergenic 35.0%
! CCATTCAATTTTCAGCCAAT+AGG + chr2_3:22129637-22129656 None:intergenic 35.0%
! CCTATTGGCTGAAAATTGAA+TGG - chr2_3:22129634-22129653 Msa0284260:intron 35.0%
GCTGAAAATTGAATGGTTCT+CGG - chr2_3:22129641-22129660 Msa0284260:intron 35.0%
GGTTCCACATAAATTTAGCA+AGG - chr2_3:22129695-22129714 Msa0284260:intron 35.0%
! GATGCATCCATTTTCCATAT+AGG - chr2_3:22129738-22129757 Msa0284260:intron 35.0%
! ACATTTTCTGATATTTGCCG+CGG - chr2_3:22129838-22129857 Msa0284260:intron 35.0%
! GCTGAAAGCATGTATTATAC+TGG - chr2_3:22129899-22129918 Msa0284260:intron 35.0%
TTATACTGGAGAACATTGAC+GGG - chr2_3:22129913-22129932 Msa0284260:intron 35.0%
AAAGGACAATTGGAAATCGA+GGG + chr2_3:22129975-22129994 None:intergenic 35.0%
GCAATTACTGAAGCATATTG+CGG + chr2_3:22130326-22130345 None:intergenic 35.0%
! TTTTGAATGACGGTAATGCA+AGG - chr2_3:22130351-22130370 Msa0284260:intron 35.0%
TTTGAATGACGGTAATGCAA+GGG - chr2_3:22130352-22130371 Msa0284260:intron 35.0%
GCAAGGGACATTATTACTTA+TGG - chr2_3:22130368-22130387 Msa0284260:intron 35.0%
ATTTGATTACCTCGCATTGA+TGG + chr2_3:22130410-22130429 None:intergenic 35.0%
! CATAGTTTTCGGAATTTTGG+AGG + chr2_3:22130476-22130495 None:intergenic 35.0%
TCAGACTTCTCATTGATGTA+AGG - chr2_3:22130598-22130617 Msa0284260:intron 35.0%
ATAAACTTTGGCCACAAGAA+AGG - chr2_3:22130669-22130688 Msa0284260:intron 35.0%
ATTAGCACTAATTGTTCAGC+TGG - chr2_3:22130721-22130740 Msa0284260:intron 35.0%
CACTAAACTAAAATCCCCTT+TGG - chr2_3:22131003-22131022 Msa0284260:intron 35.0%
AAGAACAGCTTGAATGGAAA+TGG + chr2_3:22131142-22131161 None:intergenic 35.0%
AACTCAAAGAACAGCTTGAA+TGG + chr2_3:22131148-22131167 None:intergenic 35.0%
TTAAATCTCTCCTATCCCTA+GGG + chr2_3:22131183-22131202 None:intergenic 35.0%
ATTAAATCTCTCCTATCCCT+AGG + chr2_3:22131184-22131203 None:intergenic 35.0%
!! TATGTCACGAGGTATTGTTA+TGG + chr2_3:22131256-22131275 None:intergenic 35.0%
AACAATACCTCGTGACATAA+AGG - chr2_3:22131257-22131276 Msa0284260:intron 35.0%
GGATTGAAATTGCTCCATAA+TGG - chr2_3:22131382-22131401 Msa0284260:CDS 35.0%
AAACAATAGAAGATCTCTCG+AGG + chr2_3:22131468-22131487 None:intergenic 35.0%
TTTATCATAGTTGACCCTGT+AGG + chr2_3:22131560-22131579 None:intergenic 35.0%
AACGTACTATATCGTCAAGT+AGG + chr2_3:22131585-22131604 None:intergenic 35.0%
GCTGAGTTTCTTCAACACTA+TGG - chr2_3:22125384-22125403 Msa0284260:three_prime_UTR 40.0%
TAAGTCCTTCTTTGCGGTTA+AGG - chr2_3:22125502-22125521 Msa0284260:CDS 40.0%
TTTCTCCTTAACCGCAAAGA+AGG + chr2_3:22125510-22125529 None:intergenic 40.0%
ATGAAAGTGAATGCGAAAGC+AGG - chr2_3:22125588-22125607 Msa0284260:CDS 40.0%
! GAGTTGTGTTGTTGCTAAAG+AGG - chr2_3:22125626-22125645 Msa0284260:CDS 40.0%
AGAGGATTATGCTGATGAAG+AGG - chr2_3:22125644-22125663 Msa0284260:intron 40.0%
! GAGGATTTTGTTAAAGCTGG+TGG - chr2_3:22125663-22125682 Msa0284260:intron 40.0%
GGATATGCAATCTAAGCTTG+CGG - chr2_3:22125728-22125747 Msa0284260:intron 40.0%
GTTTAATGGCCATGAACTTG+AGG + chr2_3:22126065-22126084 None:intergenic 40.0%
!! ATTGTAGCTCCTTTTAGGGA+TGG - chr2_3:22126591-22126610 Msa0284260:intron 40.0%
TTGCGGATGGTATATTACGA+GGG + chr2_3:22126920-22126939 None:intergenic 40.0%
AATTGCTCCTTGAAGGACAT+AGG - chr2_3:22126981-22127000 Msa0284260:intron 40.0%
GATGGAATGGCATGTTACAA+AGG - chr2_3:22127125-22127144 Msa0284260:intron 40.0%
! AAGGTATAGATGATTTGGGG+CGG + chr2_3:22127297-22127316 None:intergenic 40.0%
TCTATACCTTGTTCTGTCCA+TGG - chr2_3:22127307-22127326 Msa0284260:intron 40.0%
AAGACGTGTATGCCATAACA+CGG + chr2_3:22127375-22127394 None:intergenic 40.0%
TTAACTTTCACGTACAGCAC+TGG - chr2_3:22127535-22127554 Msa0284260:intron 40.0%
ACTCCATCTCCAATAGAGAT+AGG + chr2_3:22127706-22127725 None:intergenic 40.0%
! GATCTAGTCGTTATTGGTTG+TGG - chr2_3:22127730-22127749 Msa0284260:intron 40.0%
TTGTTTGTGAAAGGGAGATC+CGG + chr2_3:22127820-22127839 None:intergenic 40.0%
CTCCCTTTCACAAACAACTA+TGG - chr2_3:22127823-22127842 Msa0284260:CDS 40.0%
TCACAAACAACTATGGTGTG+TGG - chr2_3:22127830-22127849 Msa0284260:CDS 40.0%
CACAAACAACTATGGTGTGT+GGG - chr2_3:22127831-22127850 Msa0284260:CDS 40.0%
GGGCAAAACTGAAATCGTAA+GGG + chr2_3:22127956-22127975 None:intergenic 40.0%
AGGGCAAAACTGAAATCGTA+AGG + chr2_3:22127957-22127976 None:intergenic 40.0%
! ATTTCAGGTCTTGGACTTGA+AGG - chr2_3:22128236-22128255 Msa0284260:intron 40.0%
AACTTCCCTAAACCTTGCTA+TGG - chr2_3:22128657-22128676 Msa0284260:intron 40.0%
TACCTCCATAGCAAGGTTTA+GGG + chr2_3:22128665-22128684 None:intergenic 40.0%
ACAAAACTACCTCCATAGCA+AGG + chr2_3:22128672-22128691 None:intergenic 40.0%
AGGGAAACTATTGCAGTATG+AGG - chr2_3:22128773-22128792 Msa0284260:CDS 40.0%
ACTATTGCAGTATGAGGTTG+GGG - chr2_3:22128779-22128798 Msa0284260:CDS 40.0%
TGTGTGTGCAAACAGCTTAT+GGG - chr2_3:22128811-22128830 Msa0284260:CDS 40.0%
TAAAGACAAGGAAGGAAGCA+TGG + chr2_3:22129086-22129105 None:intergenic 40.0%
TCCTTATGATCCAAACGTGA+TGG - chr2_3:22129223-22129242 Msa0284260:CDS 40.0%
ACCATCACGTTTGGATCATA+AGG + chr2_3:22129227-22129246 None:intergenic 40.0%
! TCCAAACGTGATGGTTTTCA+TGG - chr2_3:22129232-22129251 Msa0284260:CDS 40.0%
TCCATGAAAACCATCACGTT+TGG + chr2_3:22129236-22129255 None:intergenic 40.0%
TTATGAAGAGGTAAGGGCTT+TGG - chr2_3:22129537-22129556 Msa0284260:intron 40.0%
ATTGAATGGTTCTCGGACTT+TGG - chr2_3:22129648-22129667 Msa0284260:intron 40.0%
GAGCCCTTGCTAAATTTATG+TGG + chr2_3:22129702-22129721 None:intergenic 40.0%
GGGCTCATCTTGTCAAAAAA+AGG - chr2_3:22129716-22129735 Msa0284260:intron 40.0%
AATAGTACGATAGGACAGAG+TGG + chr2_3:22129799-22129818 None:intergenic 40.0%
! AAATTGATGACCAATGACCG+CGG + chr2_3:22129858-22129877 None:intergenic 40.0%
GGGTAAAAGACTGCTATCAA+GGG + chr2_3:22129955-22129974 None:intergenic 40.0%
AGGGTAAAAGACTGCTATCA+AGG + chr2_3:22129956-22129975 None:intergenic 40.0%
CAAAGGACAATTGGAAATCG+AGG + chr2_3:22129976-22129995 None:intergenic 40.0%
GTAACAGCTCAAAGGACAAT+TGG + chr2_3:22129985-22130004 None:intergenic 40.0%
!! GAATGGTCTTATATCCCAGT+TGG - chr2_3:22130115-22130134 Msa0284260:intron 40.0%
CTTCTGTTCTGTGTTTGGTA+AGG + chr2_3:22130146-22130165 None:intergenic 40.0%
AGGTTCTTCTGTTCTGTGTT+TGG + chr2_3:22130151-22130170 None:intergenic 40.0%
GAACAGAAGAACCTTGCATT+TGG - chr2_3:22130157-22130176 Msa0284260:intron 40.0%
!! GGTCTAAGGTTCTAAGCTTA+CGG + chr2_3:22130437-22130456 None:intergenic 40.0%
! CTGGTAACATTTAGGGTCTA+AGG + chr2_3:22130451-22130470 None:intergenic 40.0%
GGAGGAACTGGTAACATTTA+GGG + chr2_3:22130458-22130477 None:intergenic 40.0%
TGGAGGAACTGGTAACATTT+AGG + chr2_3:22130459-22130478 None:intergenic 40.0%
!! TTTCGGAATTTTGGAGGAAC+TGG + chr2_3:22130470-22130489 None:intergenic 40.0%
CCAGATAGTAGAACTGTTTG+AGG + chr2_3:22130514-22130533 None:intergenic 40.0%
CCTCAAACAGTTCTACTATC+TGG - chr2_3:22130511-22130530 Msa0284260:intron 40.0%
ATTGTTCAGCTGGACATTGA+AGG - chr2_3:22130731-22130750 Msa0284260:intron 40.0%
CAGGTAAGCAGAAGAAAGTA+CGG + chr2_3:22130772-22130791 None:intergenic 40.0%
GAAAATAGACCATACCACTC+AGG + chr2_3:22130791-22130810 None:intergenic 40.0%
ATCTTCTATCTTGGCTTCAG+TGG - chr2_3:22130895-22130914 Msa0284260:intron 40.0%
AAAATCCCCTTTGGTATGCA+TGG - chr2_3:22131012-22131031 Msa0284260:intron 40.0%
ATCCTACCATGCATACCAAA+GGG + chr2_3:22131021-22131040 None:intergenic 40.0%
TATCCTACCATGCATACCAA+AGG + chr2_3:22131022-22131041 None:intergenic 40.0%
TATGCATGGTAGGATAGCAT+AGG - chr2_3:22131026-22131045 Msa0284260:intron 40.0%
! AGTTCTAATGAAAGCTCCCT+AGG - chr2_3:22131164-22131183 Msa0284260:intron 40.0%
GTTCTAATGAAAGCTCCCTA+GGG - chr2_3:22131165-22131184 Msa0284260:intron 40.0%
AAGGGAGTTGTAGCATGTAA+AGG + chr2_3:22131222-22131241 None:intergenic 40.0%
CTACTAACCTTTATGTCACG+AGG + chr2_3:22131267-22131286 None:intergenic 40.0%
! CTGATTTTTATCGCAGGATG+TGG - chr2_3:22131417-22131436 Msa0284260:CDS 40.0%
ATCTGCTTTCAGATCCTACA+GGG - chr2_3:22131543-22131562 Msa0284260:CDS 40.0%
! AATACAGGGTACCTAACAAG+AGG + chr2_3:22131622-22131641 None:intergenic 40.0%
TCTTGTTAGGTACCCTGTAT+TGG - chr2_3:22131621-22131640 Msa0284260:exon 40.0%
CTTGTTAGGTACCCTGTATT+GGG - chr2_3:22131622-22131641 Msa0284260:exon 40.0%
GAGACAGGCTAGATTACATT+AGG - chr2_3:22131644-22131663 Msa0284260:five_prime_UTR 40.0%
!!! TGGTTGGCGCTTTTTTGAGA+GGG + chr2_3:22125332-22125351 None:intergenic 45.0%
!!! ATGGTTGGCGCTTTTTTGAG+AGG + chr2_3:22125333-22125352 None:intergenic 45.0%
TGTTGAAACGACGACGTAGA+TGG + chr2_3:22125352-22125371 None:intergenic 45.0%
TTCGTTACAATGGAGTGCGT+TGG - chr2_3:22125447-22125466 Msa0284260:three_prime_UTR 45.0%
CGTTGGAGCGAGAAACTTAA+CGG - chr2_3:22125464-22125483 Msa0284260:three_prime_UTR 45.0%
AGCGAGAAACTTAACGGCAA+TGG - chr2_3:22125470-22125489 Msa0284260:three_prime_UTR 45.0%
CTTCGTCGAACGCAACAATT+CGG - chr2_3:22125556-22125575 Msa0284260:CDS 45.0%
AAAGTGAATGCGAAAGCAGG+TGG - chr2_3:22125591-22125610 Msa0284260:CDS 45.0%
GCAATCTAAGCTTGCGGATA+AGG - chr2_3:22125734-22125753 Msa0284260:intron 45.0%
!! ATCGAGTTGGCATTGATCGT+CGG - chr2_3:22125799-22125818 Msa0284260:intron 45.0%
CGCCACAATCTCATGATATG+TGG - chr2_3:22126702-22126721 Msa0284260:CDS 45.0%
CGCCACATATCATGAGATTG+TGG + chr2_3:22126707-22126726 None:intergenic 45.0%
CTTGCGGATGGTATATTACG+AGG + chr2_3:22126921-22126940 None:intergenic 45.0%
!! CGTAAAAAGGTGCTCTCTTG+CGG + chr2_3:22126937-22126956 None:intergenic 45.0%
GGAGCAATTGCTAATTGGGA+TGG + chr2_3:22126970-22126989 None:intergenic 45.0%
CACAACTCCTATGTCCTTCA+AGG + chr2_3:22126991-22127010 None:intergenic 45.0%
AAAGAGCCATGGACAGAACA+AGG + chr2_3:22127316-22127335 None:intergenic 45.0%
! ATGCCATAACACGGGTTACA+CGG + chr2_3:22127366-22127385 None:intergenic 45.0%
AGACGTGTATGCCATAACAC+GGG + chr2_3:22127374-22127393 None:intergenic 45.0%
GCAACTGCAAGAGCGATTAA+CGG + chr2_3:22127681-22127700 None:intergenic 45.0%
CAGTTGCCACCTATCTCTAT+TGG - chr2_3:22127694-22127713 Msa0284260:intron 45.0%
CCATCTCCAATAGAGATAGG+TGG + chr2_3:22127703-22127722 None:intergenic 45.0%
CCACCTATCTCTATTGGAGA+TGG - chr2_3:22127700-22127719 Msa0284260:intron 45.0%
AAACAACTATGGTGTGTGGG+AGG - chr2_3:22127834-22127853 Msa0284260:CDS 45.0%
GTGTGGGAGGACGAATTTAA+AGG - chr2_3:22127847-22127866 Msa0284260:CDS 45.0%
AGGATTGTTGAGGCTAGCAA+TGG - chr2_3:22128533-22128552 Msa0284260:CDS 45.0%
GCATGCAAATCATACCTGCA+GGG + chr2_3:22128596-22128615 None:intergenic 45.0%
AGCATGCAAATCATACCTGC+AGG + chr2_3:22128597-22128616 None:intergenic 45.0%
! TTCCCTAAACCTTGCTATGG+AGG - chr2_3:22128660-22128679 Msa0284260:intron 45.0%
CTACCTCCATAGCAAGGTTT+AGG + chr2_3:22128666-22128685 None:intergenic 45.0%
!! AGGCTTGTTACTGTTGCATC+AGG - chr2_3:22128741-22128760 Msa0284260:CDS 45.0%
CTATTGCAGTATGAGGTTGG+GGG - chr2_3:22128780-22128799 Msa0284260:CDS 45.0%
GTGTGTGTGCAAACAGCTTA+TGG - chr2_3:22128810-22128829 Msa0284260:CDS 45.0%
GTGTGTGCAAACAGCTTATG+GGG - chr2_3:22128812-22128831 Msa0284260:CDS 45.0%
! AACAGTGTGCTGACAAGCTT+AGG - chr2_3:22128921-22128940 Msa0284260:intron 45.0%
ACCAATACTCAGAGACTTCC+CGG + chr2_3:22129059-22129078 None:intergenic 45.0%
! TGGTTCTCGGACTTTGGAAA+TGG - chr2_3:22129654-22129673 Msa0284260:intron 45.0%
!! TGGTCTTATATCCCAGTTGG+TGG - chr2_3:22130118-22130137 Msa0284260:intron 45.0%
TTGGTAAGGATCCACCAACT+GGG + chr2_3:22130132-22130151 None:intergenic 45.0%
TTTGGTAAGGATCCACCAAC+TGG + chr2_3:22130133-22130152 None:intergenic 45.0%
ATGTGACAATGTCATGCCTG+TGG + chr2_3:22130209-22130228 None:intergenic 45.0%
CTCACAACAGAGTAGCCTAT+TGG + chr2_3:22130287-22130306 None:intergenic 45.0%
CTCTGTTGTGAGATCGTTGT+CGG - chr2_3:22130295-22130314 Msa0284260:intron 45.0%
AAGGAGAATCCATCAATGCG+AGG - chr2_3:22130398-22130417 Msa0284260:intron 45.0%
! CTCTGTCGTTTCCTTTCTTG+TGG + chr2_3:22130683-22130702 None:intergenic 45.0%
CTTTCTTCTGCTTACCTGAG+TGG - chr2_3:22130774-22130793 Msa0284260:intron 45.0%
TTCTGCTTACCTGAGTGGTA+TGG - chr2_3:22130779-22130798 Msa0284260:intron 45.0%
TCCTACCATGCATACCAAAG+GGG + chr2_3:22131020-22131039 None:intergenic 45.0%
GGATAGCATAGGACACGATA+AGG - chr2_3:22131037-22131056 Msa0284260:intron 45.0%
AATGAAAGCTCCCTAGGGAT+AGG - chr2_3:22131170-22131189 Msa0284260:intron 45.0%
! TTTTATCGCAGGATGTGGCA+AGG - chr2_3:22131422-22131441 Msa0284260:CDS 45.0%
AGGATGTGGCAAGGATTTCT+TGG - chr2_3:22131431-22131450 Msa0284260:CDS 45.0%
CATCTGCTTTCAGATCCTAC+AGG - chr2_3:22131542-22131561 Msa0284260:CDS 45.0%
!!! TTTTTTTTTGTTATAATTTT+AGG - chr2_3:22129190-22129209 Msa0284260:intron 5.0%
GAAACGACGACGTAGATGGT+TGG + chr2_3:22125348-22125367 None:intergenic 50.0%
GACGTCGTCGTTTAACTGCT+TGG + chr2_3:22125412-22125431 None:intergenic 50.0%
!! GGCATTGATCGTCGGTTTGA+AGG - chr2_3:22125807-22125826 Msa0284260:intron 50.0%
! TACTCTACAGTTTTCGCCCC+TGG + chr2_3:22126641-22126660 None:intergenic 50.0%
!! AAAAGGTGCTCTCTTGCGGA+TGG + chr2_3:22126933-22126952 None:intergenic 50.0%
!!! CAGCACTGGTTTTCACGTCT+CGG - chr2_3:22127549-22127568 Msa0284260:intron 50.0%
! GTTATTGGTTGTGGTCCTGC+TGG - chr2_3:22127739-22127758 Msa0284260:CDS 50.0%
CTTGCTCTAGCTGCTGAATC+TGG - chr2_3:22127763-22127782 Msa0284260:CDS 50.0%
GCTGCTGAATCTGGCAAGTT+AGG - chr2_3:22127772-22127791 Msa0284260:CDS 50.0%
GTTCTTATGGCCGTGTCAGT+CGG - chr2_3:22128327-22128346 Msa0284260:CDS 50.0%
! GAAGCAAATGCCGACTGACA+CGG + chr2_3:22128340-22128359 None:intergenic 50.0%
GAGTCAGGTGTCTCGTATCT+TGG - chr2_3:22128497-22128516 Msa0284260:CDS 50.0%
ATGATACTGTAGTGCCCTGC+AGG - chr2_3:22128579-22128598 Msa0284260:CDS 50.0%
!!! GGAGGTAGTTTTGTAGCACC+AGG - chr2_3:22128678-22128697 Msa0284260:intron 50.0%
TTGCATCAGGAGCAGCTTCA+GGG - chr2_3:22128754-22128773 Msa0284260:CDS 50.0%
GCTGTTTGCACACACACCTT+TGG + chr2_3:22128807-22128826 None:intergenic 50.0%
TGTGCAAACAGCTTATGGGG+TGG - chr2_3:22128815-22128834 Msa0284260:CDS 50.0%
AGCTTATGGGGTGGAAGTTG+AGG - chr2_3:22128824-22128843 Msa0284260:CDS 50.0%
TATGGGGTGGAAGTTGAGGT+AGG - chr2_3:22128828-22128847 Msa0284260:CDS 50.0%
ATGGGGTGGAAGTTGAGGTA+GGG - chr2_3:22128829-22128848 Msa0284260:CDS 50.0%
TCCGGGAAGTCTCTGAGTAT+TGG - chr2_3:22129055-22129074 Msa0284260:intron 50.0%
CCAAACACGTTTCCTGCGAT+TGG + chr2_3:22129432-22129451 None:intergenic 50.0%
CCAATCGCAGGAAACGTGTT+TGG - chr2_3:22129429-22129448 Msa0284260:intron 50.0%
CTGATATTTGCCGCGGTCAT+TGG - chr2_3:22129845-22129864 Msa0284260:intron 50.0%
TCCCCTTTGGTATGCATGGT+AGG - chr2_3:22131016-22131035 Msa0284260:intron 50.0%
CTAGCCTGTCTCCCAATACA+GGG + chr2_3:22131636-22131655 None:intergenic 50.0%
TCTAGCCTGTCTCCCAATAC+AGG + chr2_3:22131637-22131656 None:intergenic 50.0%
CACACGTACAACACAGCACA+AGG + chr2_3:22131753-22131772 None:intergenic 50.0%
AATGCGAAAGCAGGTGGTGC+AGG - chr2_3:22125597-22125616 Msa0284260:CDS 55.0%
ACGAGGGAGCGAAAGAGTTC+AGG + chr2_3:22126904-22126923 None:intergenic 55.0%
GTGCCGTGTAACCCGTGTTA+TGG - chr2_3:22127360-22127379 Msa0284260:intron 55.0%
TTCCCTAGGTGTGTCGAGTC+AGG - chr2_3:22128482-22128501 Msa0284260:intron 55.0%
! CACCTGACTCGACACACCTA+GGG + chr2_3:22128487-22128506 None:intergenic 55.0%
! ACACCTGACTCGACACACCT+AGG + chr2_3:22128488-22128507 None:intergenic 55.0%
GTTGCATCAGGAGCAGCTTC+AGG - chr2_3:22128753-22128772 Msa0284260:CDS 55.0%
GTATGAGGTTGGGGGTCCAA+AGG - chr2_3:22128788-22128807 Msa0284260:CDS 55.0%
TGGGGTGGAAGTTGAGGTAG+GGG - chr2_3:22128830-22128849 Msa0284260:intron 55.0%
ACTCAGAGACTTCCCGGACT+TGG + chr2_3:22129053-22129072 None:intergenic 55.0%
CTCGACACACTCCCTCCTAT+TGG - chr2_3:22129619-22129638 Msa0284260:intron 55.0%
TGGCAGCTGCACCAAATGCA+AGG + chr2_3:22130171-22130190 None:intergenic 55.0%
!! ATTTGGTGCAGCTGCCAGCA+TGG - chr2_3:22130174-22130193 Msa0284260:intron 55.0%
GACAATGTCATGCCTGTGGC+TGG + chr2_3:22130205-22130224 None:intergenic 55.0%
GGTACCCTGTATTGGGAGAC+AGG - chr2_3:22131629-22131648 Msa0284260:exon 55.0%
GCAGCTAGAGCAAGACCAGC+AGG + chr2_3:22127757-22127776 None:intergenic 60.0%
GGGGTGGAAGTTGAGGTAGG+GGG - chr2_3:22128831-22128850 Msa0284260:intron 60.0%
TGGAAGTTGAGGTAGGGGGC+TGG - chr2_3:22128835-22128854 Msa0284260:intron 60.0%
TGTGGCTGGATGCACCATGC+TGG + chr2_3:22130191-22130210 None:intergenic 60.0%
AGCATGGTGCATCCAGCCAC+AGG - chr2_3:22130190-22130209 Msa0284260:intron 60.0%
!! TGAGGTAGGGGGCTGGCTCT+TGG - chr2_3:22128842-22128861 Msa0284260:intron 65.0%
!! GAGGTAGGGGGCTGGCTCTT+GGG - chr2_3:22128843-22128862 Msa0284260:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 22125310 22131781 22125310 ID=Msa0284260;Name=Msa0284260
chr2_3 mRNA 22125310 22131781 22125310 ID=Msa0284260-mRNA-1;Parent=Msa0284260;Name=Msa0284260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=146|0.77|0.9|1|0.88|0.9|10|183|485
chr2_3 exon 22125310 22125658 22125310 ID=Msa0284260-mRNA-1:exon:8692;Parent=Msa0284260-mRNA-1
chr2_3 exon 22126296 22126428 22126296 ID=Msa0284260-mRNA-1:exon:8691;Parent=Msa0284260-mRNA-1
chr2_3 exon 22126672 22126800 22126672 ID=Msa0284260-mRNA-1:exon:8690;Parent=Msa0284260-mRNA-1
chr2_3 exon 22126913 22126976 22126913 ID=Msa0284260-mRNA-1:exon:8689;Parent=Msa0284260-mRNA-1
chr2_3 exon 22127736 22127879 22127736 ID=Msa0284260-mRNA-1:exon:8688;Parent=Msa0284260-mRNA-1
chr2_3 exon 22128246 22128348 22128246 ID=Msa0284260-mRNA-1:exon:8687;Parent=Msa0284260-mRNA-1
chr2_3 exon 22128491 22128601 22128491 ID=Msa0284260-mRNA-1:exon:8686;Parent=Msa0284260-mRNA-1
chr2_3 exon 22128713 22128848 22128713 ID=Msa0284260-mRNA-1:exon:8685;Parent=Msa0284260-mRNA-1
chr2_3 exon 22129223 22129394 22129223 ID=Msa0284260-mRNA-1:exon:8684;Parent=Msa0284260-mRNA-1
chr2_3 exon 22131336 22131781 22131336 ID=Msa0284260-mRNA-1:exon:8683;Parent=Msa0284260-mRNA-1
chr2_3 five_prime_UTR 22131636 22131781 22131636 ID=Msa0284260-mRNA-1:five_prime_utr;Parent=Msa0284260-mRNA-1
chr2_3 CDS 22131336 22131635 22131336 ID=Msa0284260-mRNA-1:cds;Parent=Msa0284260-mRNA-1
chr2_3 CDS 22129223 22129394 22129223 ID=Msa0284260-mRNA-1:cds;Parent=Msa0284260-mRNA-1
chr2_3 CDS 22128713 22128848 22128713 ID=Msa0284260-mRNA-1:cds;Parent=Msa0284260-mRNA-1
chr2_3 CDS 22128491 22128601 22128491 ID=Msa0284260-mRNA-1:cds;Parent=Msa0284260-mRNA-1
chr2_3 CDS 22128246 22128348 22128246 ID=Msa0284260-mRNA-1:cds;Parent=Msa0284260-mRNA-1
chr2_3 CDS 22127736 22127879 22127736 ID=Msa0284260-mRNA-1:cds;Parent=Msa0284260-mRNA-1
chr2_3 CDS 22126913 22126976 22126913 ID=Msa0284260-mRNA-1:cds;Parent=Msa0284260-mRNA-1
chr2_3 CDS 22126672 22126800 22126672 ID=Msa0284260-mRNA-1:cds;Parent=Msa0284260-mRNA-1
chr2_3 CDS 22126296 22126428 22126296 ID=Msa0284260-mRNA-1:cds;Parent=Msa0284260-mRNA-1
chr2_3 CDS 22125493 22125658 22125493 ID=Msa0284260-mRNA-1:cds;Parent=Msa0284260-mRNA-1
chr2_3 three_prime_UTR 22125310 22125492 22125310 ID=Msa0284260-mRNA-1:three_prime_utr;Parent=Msa0284260-mRNA-1
Gene Sequence

>Msa0284260

ATGGAGTGCGTTGGAGCGAGAAACTTAACGGCAATGGCGTTTTGCATAAGTCCTTCTTTGCGGTTAAGGAGAAAGAAGATTTGTTGGAGAAGAAGAGAAGCTTCGTCGAACGCAACAATTCGGTTGCGTTCGATGAAAGTGAATGCGAAAGCAGGTGGTGCAGGAAGTGAGAGTTGTGTTGTTGCTAAAGAGGATTATGCTGATGAAGAGGATTTTGTTAAAGCTGGTGGTTCTGAACTTGTTTTTGTTCAAATGCAACAGAAAAAGTCTATGGATATGCAATCTAAGCTTGCGGATAAGTTGCCACCTATCTCTATTGGAGATGGAGTACTAGATCTAGTCGTTATTGGTTGTGGTCCTGCTGGTCTTGCTCTAGCTGCTGAATCTGGCAAGTTAGGATTAAAAGTTGGACTTATTGGTCCGGATCTCCCTTTCACAAACAACTATGGTGTGTGGGAGGACGAATTTAAAGGTCTTGGACTTGAAGGTTGTATTGAGCATGTTTGGAAGGATACCGTTGTATATATTGATAATAAAAATCCGATTTCAATTGGACGTTCTTATGGCCGTGTCAGTCGGCATTTGCTTCACGAAGAATTGTTAAGAAGGTGTGTCGAGTCAGGTGTCTCGTATCTTGGCTCAAAAGTAGAAAGGATTGTTGAGGCTAGCAATGGTCATAATCATGTTGTCTGTGAATATGATACTGTAGTGCCCTGCAGGCTTGTTACTGTTGCATCAGGAGCAGCTTCAGGGAAACTATTGCAGTATGAGGTTGGGGGTCCAAAGGTGTGTGTGCAAACAGCTTATGGGGTGGAAGTTGAGGTTGAAAACAGTCCTTATGATCCAAACGTGATGGTTTTCATGGATTACAGAGATTATATGAAGAACAATGTTCAAACTCTAGAAGCTAAATATCCAACATTTCTTTATGCAATGCCCATGTCTCATACAAAAGTGTTCTTTGAGGAATGGTCTTATATCCCAGTTGGTGGATCCTTACCAAACACAGAACAGAAGAACCTTGCATTTGGCTACTCTGTTGTGAGATCGTTGTCGGAAGCTCCGCAATATGCTTCAGTAATTGCTACAATTTTGAATGACGGTAATGCAAGGGACATTATTACTTATGGAAGAAGTAAGGAGAATCCATCAATGCGAGCTTGGAATAAACTTTGGCCACAAGAAAGGAAACGACAGAGATCTTTCTTTCTTTTTGGATTAGCACTAATTGTTCAGCTGGACATTGAAGGCACTAGAACATTCTTCCGTACTTTCTTCTGCTTACCTGAGTGGATGTGGCAAGGATTTCTTGGTTCTTCTCTGTCCTCGAGAGATCTTCTATTGTTTGCACTCTACATGTTCATAATAGCACCAAATAACTTAAGAATGTCTCTAGTCAGACATCTGCTTTCAGATCCTACAGGGTCAACTATGATAAAAACCTACTTGACGATATAG

Protein sequence

>Msa0284260

MECVGARNLTAMAFCISPSLRLRRKKICWRRREASSNATIRLRSMKVNAKAGGAGSESCVVAKEDYADEEDFVKAGGSELVFVQMQQKKSMDMQSKLADKLPPISIGDGVLDLVVIGCGPAGLALAAESGKLGLKVGLIGPDLPFTNNYGVWEDEFKGLGLEGCIEHVWKDTVVYIDNKNPISIGRSYGRVSRHLLHEELLRRCVESGVSYLGSKVERIVEASNGHNHVVCEYDTVVPCRLVTVASGAASGKLLQYEVGGPKVCVQTAYGVEVEVENSPYDPNVMVFMDYRDYMKNNVQTLEAKYPTFLYAMPMSHTKVFFEEWSYIPVGGSLPNTEQKNLAFGYSVVRSLSEAPQYASVIATILNDGNARDIITYGRSKENPSMRAWNKLWPQERKRQRSFFLFGLALIVQLDIEGTRTFFRTFFCLPEWMWQGFLGSSLSSRDLLLFALYMFIIAPNNLRMSLVRHLLSDPTGSTMIKTYLTI*