AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1173340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1173340 MtrunA17_Chr8g0341861 98.286 175 3 0 1 175 1 175 5.07e-122 353
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 163 sgRNAs with CRISPR-Local

Find 457 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCAACTGTTCCCCTTTC+AGG 0.122294 8_1:+3745188 None:intergenic
CAACTGTTTATTATATTTAA+TGG 0.131610 8_1:-3741375 Msa1173340:three_prime_UTR
AAGAAACAGAATTTGAAATT+TGG 0.144508 8_1:-3742217 Msa1173340:three_prime_UTR
ATATATAAATATACAATAAT+AGG 0.165485 8_1:+3741295 None:intergenic
ATTTGGCCTATTCACTATTA+TGG 0.187662 8_1:-3739510 Msa1173340:three_prime_UTR
GATTATTCAGTTACAGATTT+TGG 0.191219 8_1:-3738672 Msa1173340:three_prime_UTR
TCAGAGAGTTGTAGCTTTAA+AGG 0.193111 8_1:-3745566 Msa1173340:CDS
TAACAAAAGATTCAGATTAA+AGG 0.199333 8_1:-3742034 Msa1173340:three_prime_UTR
TGGTGATGGAAGGGTGATTT+TGG 0.207922 8_1:-3745447 Msa1173340:CDS
ACTTTGGATATGAAATTATT+TGG 0.222214 8_1:+3739212 None:intergenic
TTGACAACTTTGAAGGGTTT+TGG 0.234488 8_1:+3741626 None:intergenic
CTCCTCAAGAATAACATATT+TGG 0.237086 8_1:+3739275 None:intergenic
AGAAACAGAATTTGAAATTT+GGG 0.241265 8_1:-3742216 Msa1173340:three_prime_UTR
TCGTGTAAGATCTGCATTAT+TGG 0.248291 8_1:-3741832 Msa1173340:three_prime_UTR
ATGCTTGCTGCTGTTATGTC+TGG 0.276795 8_1:-3742179 Msa1173340:three_prime_UTR
ATTATTGTTGGGAGCGTATC+TGG 0.277369 8_1:-3742093 Msa1173340:three_prime_UTR
AGTACTATATATCTATATTT+AGG 0.287574 8_1:+3741774 None:intergenic
TGAGAAAATTTGATAGTTCA+TGG 0.288311 8_1:-3740022 Msa1173340:three_prime_UTR
AGTTTCTTGCTGATGTTCTT+TGG 0.296937 8_1:-3739986 Msa1173340:three_prime_UTR
TTTACTTGGTTGAAAGGATT+TGG 0.305186 8_1:-3739527 Msa1173340:three_prime_UTR
GGTGGTGACTCGTATGATTC+GGG 0.312778 8_1:-3745170 Msa1173340:CDS
ATATATCTATATTTAGGAAT+TGG 0.331421 8_1:+3741780 None:intergenic
TTTCAGAAGGGGAGGAAGAT+AGG 0.332254 8_1:+3741914 None:intergenic
TGGACGATGATTCTGTTTAT+AGG 0.334225 8_1:-3745259 Msa1173340:CDS
TATATGTTGTAGATCATAAT+AGG 0.345789 8_1:-3738628 Msa1173340:three_prime_UTR
GCGGTTGCCACAGCCATTAC+TGG 0.348920 8_1:+3740080 None:intergenic
GAGCATTGGCGTTGATGATA+TGG 0.349849 8_1:+3738718 None:intergenic
TTTCTTACCAATACAGTGAT+TGG 0.360244 8_1:-3738515 Msa1173340:three_prime_UTR
GAGGAAGAATTGAGCGGAGG+AGG 0.363180 8_1:+3741987 None:intergenic
GGTAAAAGTGGAGAACAATT+TGG 0.367119 8_1:-3741440 Msa1173340:three_prime_UTR
CAATCATGTTTCTCATTTGT+CGG 0.367185 8_1:+3741671 None:intergenic
CAGAGAGTTGTAGCTTTAAA+GGG 0.368349 8_1:-3745565 Msa1173340:CDS
TGAAATTATTTGGTCCATAT+AGG 0.374264 8_1:+3739222 None:intergenic
TGTCACCTGCATGAAGCTTC+TGG 0.376676 8_1:+3739331 None:intergenic
ACAGTTGTCCCGACTGCTCT+TGG 0.379237 8_1:-3744027 Msa1173340:three_prime_UTR
GGGGAGGAAGATAGGGTTGA+TGG 0.381322 8_1:+3741922 None:intergenic
TTCAGAAGGGGAGGAAGATA+GGG 0.386770 8_1:+3741915 None:intergenic
TGGTGGTGACTCGTATGATT+CGG 0.389772 8_1:-3745171 Msa1173340:CDS
ACTAGGCTACCTGTGAAGTA+TGG 0.393809 8_1:+3741804 None:intergenic
AAAGTTAATTGATACCAATA+TGG 0.397508 8_1:+3739722 None:intergenic
GAAGTTCAGGATCCGGTATT+CGG 0.399782 8_1:-3745517 Msa1173340:CDS
AGGAGGTAAAAGAGGGTAAG+AGG 0.400064 8_1:+3741968 None:intergenic
TTTGAGAATGTAAGGGGAGG+GGG 0.400516 8_1:+3738380 None:intergenic
GGATACAATACAAGTTTGTT+TGG 0.401116 8_1:+3738408 None:intergenic
TATATAAATATACAATAATA+GGG 0.403995 8_1:+3741296 None:intergenic
GTGGCATCTGAAAACCTATA+TGG 0.411109 8_1:-3739236 Msa1173340:three_prime_UTR
CACAATAGCAGGGGTTGTTA+AGG 0.412687 8_1:-3739754 Msa1173340:three_prime_UTR
ACAAGTTTGTTTGGTGTTGA+AGG 0.413238 8_1:+3738417 None:intergenic
GCAAACAAGAGGAGAAAGAT+TGG 0.417679 8_1:+3743772 None:intergenic
GGCCTATTCACTATTATGGT+TGG 0.420950 8_1:-3739506 Msa1173340:three_prime_UTR
TCACATTCACTTCTATGCTT+CGG 0.422056 8_1:+3741466 None:intergenic
TGCTTGCTGCTGTTATGTCT+GGG 0.429245 8_1:-3742178 Msa1173340:three_prime_UTR
CTCTGTCACATTTGCTACAA+TGG 0.434598 8_1:-3743959 Msa1173340:intron
TCTGTTTATAGGAGAGGTAA+TGG 0.441718 8_1:-3745248 Msa1173340:CDS
TTCTTGCTGATGTTCTTTGG+TGG 0.442105 8_1:-3739983 Msa1173340:three_prime_UTR
CTGTTATGTCTGGGTTTCGC+TGG 0.446264 8_1:-3742169 Msa1173340:three_prime_UTR
TAAGGAGGCCGTCACCATAT+TGG 0.448702 8_1:-3739736 Msa1173340:intron
ACCAATACAGTGATTGGTAA+TGG 0.453845 8_1:-3738509 Msa1173340:three_prime_UTR
ACTTTCATGATGCGTTTACT+TGG 0.454790 8_1:-3739541 Msa1173340:three_prime_UTR
CGAAAGCTCTCTCCGAATAC+CGG 0.456403 8_1:+3745505 None:intergenic
GCCGTCACAGTCACAATAGC+AGG 0.457610 8_1:-3739765 Msa1173340:three_prime_UTR
TTTGTGTGTGTATGTGTAGA+TGG 0.461936 8_1:+3741266 None:intergenic
GCACAACACAGTGTGCAGTT+TGG 0.466555 8_1:+3741857 None:intergenic
AAAATTACACTGTAAATGTA+AGG 0.471890 8_1:+3741564 None:intergenic
GATGCGTTTACTTGGTTGAA+AGG 0.473291 8_1:-3739533 Msa1173340:three_prime_UTR
ATTCCTGATAGTTTAAAACT+TGG 0.475966 8_1:+3743120 None:intergenic
GATAGTGGAAGTTCAGGATC+CGG 0.479106 8_1:-3745524 Msa1173340:CDS
CACCAACCATAATAGTGAAT+AGG 0.480731 8_1:+3739504 None:intergenic
TGAATGTGAAAAGGTAAAAG+TGG 0.482408 8_1:-3741452 Msa1173340:three_prime_UTR
TATATTTAGGAATTGGAACT+AGG 0.484248 8_1:+3741787 None:intergenic
AATGCATCTAAAATATTAAG+TGG 0.484373 8_1:+3738543 None:intergenic
ATGTAGGAAGGAGGTAAAAG+AGG 0.486189 8_1:+3741960 None:intergenic
GGTCAATTTCGTTGTTACAT+TGG 0.486992 8_1:-3738447 Msa1173340:three_prime_UTR
TATTGAAGACAGTCCTGAAA+GGG 0.489450 8_1:-3745201 Msa1173340:CDS
ACCATTACCAATCACTGTAT+TGG 0.491682 8_1:+3738508 None:intergenic
AGTCAAGAGATGATGTAGGA+AGG 0.500937 8_1:+3741948 None:intergenic
ACCGTGTTTGACAACTTTGA+AGG 0.502314 8_1:+3741619 None:intergenic
GAAACAGAATTTGAAATTTG+GGG 0.502876 8_1:-3742215 Msa1173340:three_prime_UTR
AATGTTCAGTTAGCGATAGC+AGG 0.503802 8_1:+3741221 None:intergenic
GATGAGTCAAGAGATGATGT+AGG 0.503818 8_1:+3741944 None:intergenic
AGATCATCATACAAAAGATT+CGG 0.504216 8_1:-3739301 Msa1173340:three_prime_UTR
GAAAGGATCGTGCCGATGAA+TGG 0.505519 8_1:-3745293 Msa1173340:CDS
ACTTCTATGCTTCGGCCTCA+AGG 0.506147 8_1:+3741474 None:intergenic
CCTGAAAGGGGAACAGTTGG+TGG 0.506734 8_1:-3745188 Msa1173340:CDS
ATATGTTATTCTTGAGGAGA+TGG 0.508928 8_1:-3739271 Msa1173340:three_prime_UTR
TTGATAAGTTTCGGAAGGAA+AGG 0.517003 8_1:-3745310 Msa1173340:CDS
GTCTTCAAGATATTTGCTAC+AGG 0.517741 8_1:+3745104 None:intergenic
ACATAGCTCATCAAGGTAAG+TGG 0.518542 8_1:+3740107 None:intergenic
GGACTGTCTTCAATATCAAA+AGG 0.520338 8_1:+3745209 None:intergenic
TTCGGCCTCAAGGTTGTAGC+CGG 0.523367 8_1:+3741484 None:intergenic
CCGTGTTTGACAACTTTGAA+GGG 0.525410 8_1:+3741620 None:intergenic
GCATAGAAGTGAATGTGAAA+AGG 0.526950 8_1:-3741461 Msa1173340:three_prime_UTR
TAAATATAGATATATAGTAC+TGG 0.527570 8_1:-3741772 Msa1173340:three_prime_UTR
ACAATAATAGGGATCGTATC+CGG 0.528668 8_1:+3741307 None:intergenic
GACTGCTCTTGGAACAGCTA+TGG 0.528783 8_1:-3744016 Msa1173340:three_prime_UTR
GCATATATAATACCTGCAAA+AGG 0.531461 8_1:+3742132 None:intergenic
CAAGAGATGATGTAGGAAGG+AGG 0.533092 8_1:+3741951 None:intergenic
GGATCAGAAATTAGGTGATG+AGG 0.534429 8_1:-3745426 Msa1173340:CDS
CAACACAGTGTGCAGTTTGG+CGG 0.540395 8_1:+3741860 None:intergenic
AATAATATAAGAAAATGAAA+AGG 0.542918 8_1:+3742110 None:intergenic
ATATGGCTAAGGCAAGTCCC+TGG 0.544792 8_1:+3738735 None:intergenic
TCCATCGGCATATTACTGAC+AGG 0.547715 8_1:-3743084 Msa1173340:intron
GAACAAAGCGATTAAACTGT+AGG 0.548352 8_1:+3741729 None:intergenic
TGTAGGAAGGAGGTAAAAGA+GGG 0.550336 8_1:+3741961 None:intergenic
AGCCAAATATGTTATTCTTG+AGG 0.551577 8_1:-3739277 Msa1173340:three_prime_UTR
ATTGAAAAGAAAGAATCCTA+TGG 0.555348 8_1:-3741134 Msa1173340:intron
AGTGGAGAACAATTTGGTGG+AGG 0.555552 8_1:-3741434 Msa1173340:three_prime_UTR
AGGAAGAATTGAGCGGAGGA+GGG 0.555907 8_1:+3741988 None:intergenic
GATGATAATGATGGTGGTGA+TGG 0.556719 8_1:-3745461 Msa1173340:CDS
GTGGAGAACAATTTGGTGGA+GGG 0.560757 8_1:-3741433 Msa1173340:three_prime_UTR
CCCTTCAAAGTTGTCAAACA+CGG 0.562020 8_1:-3741620 Msa1173340:three_prime_UTR
GCAGTCGGGACAACTGTGAA+AGG 0.567917 8_1:+3744033 None:intergenic
AAGCAATGATTTCGAAGAAG+AGG 0.568201 8_1:-3738774 Msa1173340:three_prime_UTR
AATAGCAGGGGTTGTTAAGG+AGG 0.572240 8_1:-3739751 Msa1173340:three_prime_UTR
ATCGTACTAGCACCATTCAT+CGG 0.574131 8_1:+3745281 None:intergenic
ATAATGATGGTGGTGATGGA+AGG 0.581801 8_1:-3745457 Msa1173340:CDS
ATATTGAAGACAGTCCTGAA+AGG 0.583185 8_1:-3745202 Msa1173340:CDS
TGGCGTTGATGATATGGCTA+AGG 0.583630 8_1:+3738724 None:intergenic
AGATACCAGAAGCTTCATGC+AGG 0.583657 8_1:-3739336 Msa1173340:three_prime_UTR
TAAGAGGAAGAATTGAGCGG+AGG 0.583756 8_1:+3741984 None:intergenic
GGTTTGAATTGGAAGGTTGG+AGG 0.584315 8_1:-3743145 Msa1173340:intron
TTGGACCGTCCATACTTCAC+AGG 0.586362 8_1:-3741813 Msa1173340:three_prime_UTR
TTGTTGATCCATAAGAAACA+AGG 0.586605 8_1:-3741597 Msa1173340:three_prime_UTR
GTTGAAAAGAATGAGGTGCA+AGG 0.586920 8_1:-3745362 Msa1173340:CDS
TAGCTGTTCCAAGAGCAGTC+GGG 0.589209 8_1:+3744019 None:intergenic
ACCTGTCAGTAATATGCCGA+TGG 0.590074 8_1:+3743083 None:intergenic
ATAGCTGTTCCAAGAGCAGT+CGG 0.592561 8_1:+3744018 None:intergenic
AGTCCTGAAAGGGGAACAGT+TGG 0.594658 8_1:-3745191 Msa1173340:CDS
TGGAGCTACATAGCTCATCA+AGG 0.595512 8_1:+3740100 None:intergenic
GATGATTCTGTTTATAGGAG+AGG 0.598444 8_1:-3745254 Msa1173340:CDS
GTGGTGACTCGTATGATTCG+GGG 0.601391 8_1:-3745169 Msa1173340:CDS
AGCAATGATTTCGAAGAAGA+GGG 0.603074 8_1:-3738773 Msa1173340:three_prime_UTR
AAAAGTGGAGAACAATTTGG+TGG 0.607879 8_1:-3741437 Msa1173340:three_prime_UTR
CCGTCACAGTCACAATAGCA+GGG 0.608410 8_1:-3739764 Msa1173340:three_prime_UTR
GGAAAGCAAAAGCAAACAAG+AGG 0.608751 8_1:+3743761 None:intergenic
GGGTAAGAGGAAGAATTGAG+CGG 0.613826 8_1:+3741981 None:intergenic
TGGTGACTCGTATGATTCGG+GGG 0.616100 8_1:-3745168 Msa1173340:CDS
GGCTACCTGTGAAGTATGGA+CGG 0.616357 8_1:+3741808 None:intergenic
AATTGATACCAATATGGTGA+CGG 0.618158 8_1:+3739728 None:intergenic
TAATGATGGTGGTGATGGAA+GGG 0.620916 8_1:-3745456 Msa1173340:CDS
GATGAATGGTGCTAGTACGA+TGG 0.623958 8_1:-3745279 Msa1173340:CDS
TGTAGCTCCAGTAATGGCTG+TGG 0.626348 8_1:-3740087 Msa1173340:three_prime_UTR
TGGAGAACAATTTGGTGGAG+GGG 0.626348 8_1:-3741432 Msa1173340:three_prime_UTR
GACAGAATAGAAGAGAGCAT+TGG 0.631652 8_1:+3738704 None:intergenic
TGTTGATCCATAAGAAACAA+GGG 0.638024 8_1:-3741596 Msa1173340:three_prime_UTR
GAGCTATGTAGCTCCAGTAA+TGG 0.650395 8_1:-3740093 Msa1173340:three_prime_UTR
ATTGAAGACAGTCCTGAAAG+GGG 0.665406 8_1:-3745200 Msa1173340:CDS
CCCTGCTATTGTGACTGTGA+CGG 0.667298 8_1:+3739764 None:intergenic
CAATAAATAAGAGTTCTCAC+CGG 0.670931 8_1:-3741326 Msa1173340:three_prime_UTR
GTTGATCCATAAGAAACAAG+GGG 0.676845 8_1:-3741595 Msa1173340:three_prime_UTR
CGTCACAGTCACAATAGCAG+GGG 0.682759 8_1:-3739763 Msa1173340:three_prime_UTR
GCTTCATGCAGGTGACAATG+TGG 0.684466 8_1:-3739325 Msa1173340:three_prime_UTR
GCTATGTTTAACGGTGACGC+CGG 0.687645 8_1:-3741503 Msa1173340:three_prime_UTR
GAGGAGATGGATGAACAAGA+TGG 0.689009 8_1:-3739258 Msa1173340:three_prime_UTR
TGACGCCGGCTACAACCTTG+AGG 0.693977 8_1:-3741489 Msa1173340:three_prime_UTR
TGTGACGACGATGATAATGA+TGG 0.708588 8_1:-3745470 Msa1173340:CDS
AATAATGCAGATCTTACACG+AGG 0.710389 8_1:+3741834 None:intergenic
GGTGACTCGTATGATTCGGG+GGG 0.712537 8_1:-3745167 Msa1173340:CDS
GAGATGGATGAACAAGATGG+TGG 0.719797 8_1:-3739255 Msa1173340:three_prime_UTR
TAATGCAAAAGAAAGAAGTG+CGG 0.722220 8_1:+3740061 None:intergenic
TTGATCCATAAGAAACAAGG+GGG 0.726217 8_1:-3741594 Msa1173340:three_prime_UTR
GACGACGATGATAATGATGG+TGG 0.757338 8_1:-3745467 Msa1173340:CDS
ATAATGCAGATCTTACACGA+GGG 0.785253 8_1:+3741835 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+GGG + chr8_1:3743051-3743070 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr8_1:3743052-3743071 None:intergenic 0.0%
!!! GAATGAAATATTTATTTTTT+TGG - chr8_1:3740031-3740050 Msa1173340:three_prime_UTR 10.0%
!!! ATTAAACATTCTAAAATTTA+AGG - chr8_1:3740263-3740282 Msa1173340:intron 10.0%
!! AATAATATAAGAAAATGAAA+AGG + chr8_1:3741832-3741851 None:intergenic 10.0%
!!! ATATTTTATATATTCATTTG+TGG - chr8_1:3744794-3744813 Msa1173340:intron 10.0%
!!! AAATATTTTAATACAATACT+AGG + chr8_1:3745370-3745389 None:intergenic 10.0%
!! AGAAAAATAAATAAAATTTG+GGG + chr8_1:3745589-3745608 None:intergenic 10.0%
!! CAGAAAAATAAATAAAATTT+GGG + chr8_1:3745590-3745609 None:intergenic 10.0%
!!! ATATGAAATGTTTTAACAAT+AGG - chr8_1:3739725-3739744 Msa1173340:intron 15.0%
!!! TGTCATTTAATTATAAATGT+TGG - chr8_1:3740773-3740792 Msa1173340:intron 15.0%
!! TGAAATGATAAATAATACTA+TGG + chr8_1:3740903-3740922 None:intergenic 15.0%
!!! TATTTTTCTTTCCTAAATTA+AGG - chr8_1:3741055-3741074 Msa1173340:intron 15.0%
!! TTAAAATATCAACTTTACAT+CGG - chr8_1:3741160-3741179 Msa1173340:three_prime_UTR 15.0%
!! TTTATACTAACAAATTAGTA+TGG - chr8_1:3741426-3741445 Msa1173340:three_prime_UTR 15.0%
!!! TCATTTTCTTATATTATTGT+TGG - chr8_1:3741834-3741853 Msa1173340:three_prime_UTR 15.0%
!!! CATTTTCTTATATTATTGTT+GGG - chr8_1:3741835-3741854 Msa1173340:three_prime_UTR 15.0%
!! ATATATCTATATTTAGGAAT+TGG + chr8_1:3742162-3742181 None:intergenic 15.0%
!! AGTACTATATATCTATATTT+AGG + chr8_1:3742168-3742187 None:intergenic 15.0%
!! TAAATATAGATATATAGTAC+TGG - chr8_1:3742167-3742186 Msa1173340:three_prime_UTR 15.0%
!! CAACTGTTTATTATATTTAA+TGG - chr8_1:3742564-3742583 Msa1173340:intron 15.0%
!! AGTTTATTTATTGAAAACAT+TGG - chr8_1:3742849-3742868 Msa1173340:intron 15.0%
!! TATAATTAATGTTCGATTTA+AGG + chr8_1:3743171-3743190 None:intergenic 15.0%
!!! TCTACATTTTTTTATATGAT+TGG - chr8_1:3744247-3744266 Msa1173340:intron 15.0%
!! TAAAATCATATTAATGATGA+AGG - chr8_1:3744840-3744859 Msa1173340:intron 15.0%
!!! GATTTTCTTTTGATAAGTTT+CGG - chr8_1:3738620-3738639 Msa1173340:three_prime_UTR 20.0%
!! TGGATAGTATTCATTAAAAA+GGG + chr8_1:3739265-3739284 None:intergenic 20.0%
!! AAATTTATGAGACCAAAAAT+AGG + chr8_1:3739323-3739342 None:intergenic 20.0%
!!! TGTAACTTCATAATACATTT+TGG - chr8_1:3739459-3739478 Msa1173340:intron 20.0%
!! ACAGAATTACAAATTATATG+CGG + chr8_1:3739541-3739560 None:intergenic 20.0%
!! GATTACAAAAACAAAATGAA+AGG + chr8_1:3740213-3740232 None:intergenic 20.0%
!!! AATTTCTGATATAGTCTTTT+AGG + chr8_1:3740497-3740516 None:intergenic 20.0%
!! TTCTTGAATAATCATATGTT+TGG - chr8_1:3740702-3740721 Msa1173340:intron 20.0%
!!! TTATAAATGTTGGTTTGAAT+TGG - chr8_1:3740783-3740802 Msa1173340:intron 20.0%
!!! TTTTGTAGTTTCCTTAATTT+AGG + chr8_1:3741069-3741088 None:intergenic 20.0%
!! TATTCGTCTATCAATTATAA+TGG - chr8_1:3741514-3741533 Msa1173340:three_prime_UTR 20.0%
!!! TTAGTTTTGAATTATTGTTG+AGG + chr8_1:3741666-3741685 None:intergenic 20.0%
!!! TAATGTCTTCAAGTTTATTT+TGG - chr8_1:3741683-3741702 Msa1173340:three_prime_UTR 20.0%
!!! AAGAAACAGAATTTGAAATT+TGG - chr8_1:3741722-3741741 Msa1173340:three_prime_UTR 20.0%
!!! AGAAACAGAATTTGAAATTT+GGG - chr8_1:3741723-3741742 Msa1173340:three_prime_UTR 20.0%
!! TAACAAAAGATTCAGATTAA+AGG - chr8_1:3741905-3741924 Msa1173340:three_prime_UTR 20.0%
!! AAAATTACACTGTAAATGTA+AGG + chr8_1:3742378-3742397 None:intergenic 20.0%
!!! TATTTAATTTTTACCAGTCA+TGG - chr8_1:3743197-3743216 Msa1173340:intron 20.0%
!!! TATTGACAATGATTTCTTTT+CGG + chr8_1:3743287-3743306 None:intergenic 20.0%
!!! TCTACAATATTTTTCACATT+AGG + chr8_1:3743410-3743429 None:intergenic 20.0%
!!! ATTGAACTTATAATTTTCCT+TGG + chr8_1:3743542-3743561 None:intergenic 20.0%
!! TATAAGTTCAATCATTATGA+AGG - chr8_1:3743550-3743569 Msa1173340:intron 20.0%
!! AGTCAAATATATATATCAGA+GGG + chr8_1:3744016-3744035 None:intergenic 20.0%
!! AAGTCAAATATATATATCAG+AGG + chr8_1:3744017-3744036 None:intergenic 20.0%
!! AAAGTTAATTGATACCAATA+TGG + chr8_1:3744220-3744239 None:intergenic 20.0%
!! ACTTTGGATATGAAATTATT+TGG + chr8_1:3744730-3744749 None:intergenic 20.0%
!! ATTTAACTGTATCAAAGAAA+AGG + chr8_1:3744756-3744775 None:intergenic 20.0%
!!! TTTTCTTTGATACAGTTAAA+TGG - chr8_1:3744755-3744774 Msa1173340:intron 20.0%
!!! ATTATTTGAGACATGAATAT+TGG - chr8_1:3745008-3745027 Msa1173340:intron 20.0%
!! TATATGTTGTAGATCATAAT+AGG - chr8_1:3745311-3745330 Msa1173340:CDS 20.0%
!!! AATGCATCTAAAATATTAAG+TGG + chr8_1:3745399-3745418 None:intergenic 20.0%
!!! TTACTCAACAACTATATTTT+TGG - chr8_1:3745453-3745472 Msa1173340:CDS 20.0%
!!! TACTCAACAACTATATTTTT+GGG - chr8_1:3745454-3745473 Msa1173340:CDS 20.0%
!! CTATGTTTTTCATATTTGTG+TGG - chr8_1:3738857-3738876 Msa1173340:intron 25.0%
! TGATGTTTACGATTTATTGA+TGG - chr8_1:3739067-3739086 Msa1173340:intron 25.0%
! ATCACAAACAACACTAAAAA+GGG + chr8_1:3739148-3739167 None:intergenic 25.0%
!!! ATCGTTATATGTTTTGAAAC+AGG - chr8_1:3739194-3739213 Msa1173340:intron 25.0%
! AGGTATAATAAAAGTCTGTT+GGG - chr8_1:3739214-3739233 Msa1173340:three_prime_UTR 25.0%
! GTGGATAGTATTCATTAAAA+AGG + chr8_1:3739266-3739285 None:intergenic 25.0%
!! CGAAATTTATCACCTATTTT+TGG - chr8_1:3739308-3739327 Msa1173340:three_prime_UTR 25.0%
!!! TGGTATTCTATGTTTTAACT+TGG - chr8_1:3739400-3739419 Msa1173340:intron 25.0%
!! GCATATAATTTGTAATTCTG+TGG - chr8_1:3739540-3739559 Msa1173340:three_prime_UTR 25.0%
! ATTAAGATTCTAATGTTACG+TGG - chr8_1:3739613-3739632 Msa1173340:intron 25.0%
!!! TGTTTTAACAATAGGTTGAT+TGG - chr8_1:3739733-3739752 Msa1173340:intron 25.0%
!! GTTAGTTGTTTCCTTAAAAA+TGG + chr8_1:3740091-3740110 None:intergenic 25.0%
! AAAGGAAAGGTAAATAAAGA+GGG + chr8_1:3740122-3740141 None:intergenic 25.0%
! AAAAGGAAAGGTAAATAAAG+AGG + chr8_1:3740123-3740142 None:intergenic 25.0%
! GATTTACACTGCAAAATAAA+AGG + chr8_1:3740140-3740159 None:intergenic 25.0%
!! ATTCCTGATAGTTTAAAACT+TGG + chr8_1:3740822-3740841 None:intergenic 25.0%
! TAACTTTCTTACTACTGTAA+GGG + chr8_1:3741241-3741260 None:intergenic 25.0%
! ATAACTTTCTTACTACTGTA+AGG + chr8_1:3741242-3741261 None:intergenic 25.0%
!!! TTTTAGTTATTCTTTTCCCA+TGG - chr8_1:3741593-3741612 Msa1173340:three_prime_UTR 25.0%
!! GAAACAGAATTTGAAATTTG+GGG - chr8_1:3741724-3741743 Msa1173340:three_prime_UTR 25.0%
!!! ATTCAGATTAAAGGTTTTGT+TGG - chr8_1:3741914-3741933 Msa1173340:three_prime_UTR 25.0%
!!! ACAATTTGCATTTTTCAGAA+GGG + chr8_1:3742040-3742059 None:intergenic 25.0%
! TATATTTAGGAATTGGAACT+AGG + chr8_1:3742155-3742174 None:intergenic 25.0%
!!! GTTTTGGGATTTTAATTTGT+TGG + chr8_1:3742300-3742319 None:intergenic 25.0%
!! AGGATTCTTTCTTTTCAATT+TGG + chr8_1:3742804-3742823 None:intergenic 25.0%
! ATTGAAAAGAAAGAATCCTA+TGG - chr8_1:3742805-3742824 Msa1173340:intron 25.0%
! AATAAACTATTACATGTGCA+AGG + chr8_1:3742837-3742856 None:intergenic 25.0%
! GGTATTGTTAGATTTAGATT+AGG - chr8_1:3742870-3742889 Msa1173340:intron 25.0%
! AGCAAGTTATAACTAAAAAG+TGG - chr8_1:3742963-3742982 Msa1173340:intron 25.0%
! AATACTCAATATCTGTTAAG+AGG - chr8_1:3743506-3743525 Msa1173340:intron 25.0%
! TCAATCATTATGAAGGATTT+AGG - chr8_1:3743557-3743576 Msa1173340:intron 25.0%
!! TGAGAAAATTTGATAGTTCA+TGG - chr8_1:3743917-3743936 Msa1173340:intron 25.0%
! ATAAACTCCTACCATAAAAA+AGG + chr8_1:3743990-3744009 None:intergenic 25.0%
!!! ACCTTATTTTGTTGTGTTTA+CGG - chr8_1:3744055-3744074 Msa1173340:intron 25.0%
! TTATATCTTTATCTTCTTGC+AGG - chr8_1:3744116-3744135 Msa1173340:intron 25.0%
! AGATCATCATACAAAAGATT+CGG - chr8_1:3744638-3744657 Msa1173340:intron 25.0%
! TGAAATTATTTGGTCCATAT+AGG + chr8_1:3744720-3744739 None:intergenic 25.0%
! AATCATATTAATGATGAAGG+CGG - chr8_1:3744843-3744862 Msa1173340:intron 25.0%
!!! TACCTTTTTTACAATTAGCA+AGG - chr8_1:3744893-3744912 Msa1173340:intron 25.0%
!!! ACCTTTTTTACAATTAGCAA+GGG - chr8_1:3744894-3744913 Msa1173340:intron 25.0%
! AATAATGAACTGATGTTACA+TGG + chr8_1:3744938-3744957 None:intergenic 25.0%
! TGAATTGATGTTACATTACA+TGG + chr8_1:3744989-3745008 None:intergenic 25.0%
!! AGTTTATTGACTGAGAATTA+TGG + chr8_1:3745089-3745108 None:intergenic 25.0%
!! GATTATTCAGTTACAGATTT+TGG - chr8_1:3745267-3745286 Msa1173340:CDS 25.0%
!!! ACTCAACAACTATATTTTTG+GGG - chr8_1:3745455-3745474 Msa1173340:CDS 25.0%
!!! TATTTTTGGGGAAAAAATGT+TGG - chr8_1:3745467-3745486 Msa1173340:CDS 25.0%
!! GCTATTGATGATTTTGATAG+TGG - chr8_1:3738400-3738419 Msa1173340:three_prime_UTR 30.0%
! GTGATTTTGGATCAGAAATT+AGG - chr8_1:3738505-3738524 Msa1173340:three_prime_UTR 30.0%
! ACCTCATTCTTTTCAACAAA+AGG + chr8_1:3738574-3738593 None:intergenic 30.0%
! TTCTTTTGATAAGTTTCGGA+AGG - chr8_1:3738624-3738643 Msa1173340:three_prime_UTR 30.0%
CAAGGTCAAAAATAAACTGA+AGG + chr8_1:3738887-3738906 None:intergenic 30.0%
GGTTTAGTTGGCATTTATAT+TGG - chr8_1:3738929-3738948 Msa1173340:intron 30.0%
CATCACAAACAACACTAAAA+AGG + chr8_1:3739149-3739168 None:intergenic 30.0%
CAGGTATAATAAAAGTCTGT+TGG - chr8_1:3739213-3739232 Msa1173340:intron 30.0%
TATTCATTAAAAAGGGAGCT+GGG + chr8_1:3739258-3739277 None:intergenic 30.0%
! TTGTTACTTGTTGAGTGTTA+TGG - chr8_1:3739503-3739522 Msa1173340:three_prime_UTR 30.0%
!! CGCTAAATTTTGAGTGAAAA+TGG + chr8_1:3739705-3739724 None:intergenic 30.0%
GAGATAAAAACCACAGAAAA+CGG + chr8_1:3739764-3739783 None:intergenic 30.0%
!! CTACATTTGCTCCATTTTTA+AGG - chr8_1:3740077-3740096 Msa1173340:three_prime_UTR 30.0%
AAGGAAAGGTAAATAAAGAG+GGG + chr8_1:3740121-3740140 None:intergenic 30.0%
ACACTGCAAAATAAAAGGAA+AGG + chr8_1:3740135-3740154 None:intergenic 30.0%
TGCATTGCTAGGATAATTTA+TGG - chr8_1:3740289-3740308 Msa1173340:intron 30.0%
GCATTGCTAGGATAATTTAT+GGG - chr8_1:3740290-3740309 Msa1173340:intron 30.0%
! AAGACAATAGGTGTTCTTTT+TGG - chr8_1:3740369-3740388 Msa1173340:intron 30.0%
CTTTACAATGCAAGAAATTG+TGG - chr8_1:3740522-3740541 Msa1173340:intron 30.0%
AACACAAACTAATATTCGAG+AGG + chr8_1:3740736-3740755 None:intergenic 30.0%
!! AAATGTTGGTTTGAATTGGA+AGG - chr8_1:3740787-3740806 Msa1173340:intron 30.0%
!!! GTACCAAGTTTTAAACTATC+AGG - chr8_1:3740816-3740835 Msa1173340:intron 30.0%
!! ATCATTTTAGTCATCTCCAT+CGG - chr8_1:3740840-3740859 Msa1173340:intron 30.0%
AAATTGAAAGAACAGCATGA+TGG + chr8_1:3741138-3741157 None:intergenic 30.0%
! ATCTTAAAAAGGAGGGTTTT+TGG + chr8_1:3741203-3741222 None:intergenic 30.0%
GATAGAGATCTTAAAAAGGA+GGG + chr8_1:3741210-3741229 None:intergenic 30.0%
CTTGGATAGAGATCTTAAAA+AGG + chr8_1:3741214-3741233 None:intergenic 30.0%
TGATTCCTGATAGGATATAA+TGG + chr8_1:3741337-3741356 None:intergenic 30.0%
TATCAAACATGATTCCTGAT+AGG + chr8_1:3741346-3741365 None:intergenic 30.0%
GAATCATGTTTGATATCCAA+AGG - chr8_1:3741351-3741370 Msa1173340:three_prime_UTR 30.0%
TAAGCTCTTCATATTCTTGT+TGG - chr8_1:3741491-3741510 Msa1173340:three_prime_UTR 30.0%
CGTCTATCAATTATAATGGT+TGG - chr8_1:3741518-3741537 Msa1173340:three_prime_UTR 30.0%
!! ATGGTTGGTTTCAAAATGAT+TGG - chr8_1:3741533-3741552 Msa1173340:three_prime_UTR 30.0%
GTTTCAAAATGATTGGAACA+GGG - chr8_1:3741540-3741559 Msa1173340:three_prime_UTR 30.0%
! TTAATATTCTAGAGAGCCAT+GGG + chr8_1:3741612-3741631 None:intergenic 30.0%
! TTTAATATTCTAGAGAGCCA+TGG + chr8_1:3741613-3741632 None:intergenic 30.0%
GCATATATAATACCTGCAAA+AGG + chr8_1:3741810-3741829 None:intergenic 30.0%
!! CAATTTGCATTTTTCAGAAG+GGG + chr8_1:3742039-3742058 None:intergenic 30.0%
!! CACAATTTGCATTTTTCAGA+AGG + chr8_1:3742041-3742060 None:intergenic 30.0%
CAATCATGTTTCTCATTTGT+CGG + chr8_1:3742271-3742290 None:intergenic 30.0%
TTGTTGATCCATAAGAAACA+AGG - chr8_1:3742342-3742361 Msa1173340:intron 30.0%
TGTTGATCCATAAGAAACAA+GGG - chr8_1:3742343-3742362 Msa1173340:intron 30.0%
! GTTTTCGTTGCTATGTTTAA+CGG - chr8_1:3742427-3742446 Msa1173340:intron 30.0%
TGAATGTGAAAAGGTAAAAG+TGG - chr8_1:3742487-3742506 Msa1173340:intron 30.0%
CAATAAATAAGAGTTCTCAC+CGG - chr8_1:3742613-3742632 Msa1173340:intron 30.0%
! ACATTCTTGCTTCATTTTCT+TGG - chr8_1:3742736-3742755 Msa1173340:intron 30.0%
! CATTCTTGCTTCATTTTCTT+GGG - chr8_1:3742737-3742756 Msa1173340:intron 30.0%
! ACACCAACTAATTTTTGTGA+AGG - chr8_1:3742932-3742951 Msa1173340:intron 30.0%
ACACCTTCACAAAAATTAGT+TGG + chr8_1:3742938-3742957 None:intergenic 30.0%
!!! TATATTTTTTCTGCTGCCTT+TGG - chr8_1:3743136-3743155 Msa1173340:intron 30.0%
TTTAAGGATTGATTGACCAA+AGG + chr8_1:3743155-3743174 None:intergenic 30.0%
TGTTCTATGGAACTAAATGT+TGG - chr8_1:3743250-3743269 Msa1173340:intron 30.0%
GTTCTATGGAACTAAATGTT+GGG - chr8_1:3743251-3743270 Msa1173340:intron 30.0%
! AGTTTTGCCTTAGATGATTT+AGG - chr8_1:3743429-3743448 Msa1173340:intron 30.0%
! GGATTTAGGTTTAAAATGTC+TGG - chr8_1:3743571-3743590 Msa1173340:intron 30.0%
TGTTAAACATGATTTACGAC+AGG - chr8_1:3743594-3743613 Msa1173340:intron 30.0%
AAAGATAGTGCTATCTACAA+AGG + chr8_1:3743712-3743731 None:intergenic 30.0%
TACAAGTAGAAGATAAACAC+AGG + chr8_1:3743752-3743771 None:intergenic 30.0%
!!! ATACTTTTTCCAATGACTTC+AGG - chr8_1:3743799-3743818 Msa1173340:intron 30.0%
TAATGCAAAAGAAAGAAGTG+CGG + chr8_1:3743881-3743900 None:intergenic 30.0%
! TTTCTTTTGCATTAGATCCT+TGG - chr8_1:3743887-3743906 Msa1173340:intron 30.0%
! TTCTTTTGCATTAGATCCTT+GGG - chr8_1:3743888-3743907 Msa1173340:intron 30.0%
! AATTTTCTCATTTCTTCCCA+AGG + chr8_1:3743907-3743926 None:intergenic 30.0%
ACCGTAAACACAACAAAATA+AGG + chr8_1:3744059-3744078 None:intergenic 30.0%
AATTGATACCAATATGGTGA+CGG + chr8_1:3744214-3744233 None:intergenic 30.0%
!! TTTTTATATGATTGGTCCAG+TGG - chr8_1:3744255-3744274 Msa1173340:intron 30.0%
! TAAAGCACTATACGAGTAAT+AGG + chr8_1:3744285-3744304 None:intergenic 30.0%
AATAATCTAGATTCATGCTC+AGG - chr8_1:3744310-3744329 Msa1173340:intron 30.0%
CCAGAACATTAAGTTCAATA+TGG + chr8_1:3744344-3744363 None:intergenic 30.0%
CCATATTGAACTTAATGTTC+TGG - chr8_1:3744341-3744360 Msa1173340:intron 30.0%
TTTACTTGGTTGAAAGGATT+TGG - chr8_1:3744412-3744431 Msa1173340:intron 30.0%
ATTTGGCCTATTCACTATTA+TGG - chr8_1:3744429-3744448 Msa1173340:intron 30.0%
AACCTGTTCACTTAAATGTT+TGG - chr8_1:3744573-3744592 Msa1173340:intron 30.0%
AACCAAACATTTAAGTGAAC+AGG + chr8_1:3744578-3744597 None:intergenic 30.0%
AGCCAAATATGTTATTCTTG+AGG - chr8_1:3744662-3744681 Msa1173340:intron 30.0%
CTCCTCAAGAATAACATATT+TGG + chr8_1:3744667-3744686 None:intergenic 30.0%
ATATGTTATTCTTGAGGAGA+TGG - chr8_1:3744668-3744687 Msa1173340:intron 30.0%
ATCAAAGAAAAGGCTTACTT+TGG + chr8_1:3744746-3744765 None:intergenic 30.0%
ATCATATTAATGATGAAGGC+GGG - chr8_1:3744844-3744863 Msa1173340:intron 30.0%
TCCCTTGCTAATTGTAAAAA+AGG + chr8_1:3744898-3744917 None:intergenic 30.0%
ATCAGTTCATTATTTGAGCA+AGG - chr8_1:3744944-3744963 Msa1173340:intron 30.0%
TCAGTTCATTATTTGAGCAA+GGG - chr8_1:3744945-3744964 Msa1173340:intron 30.0%
TTTCTTACCAATACAGTGAT+TGG - chr8_1:3745424-3745443 Msa1173340:CDS 30.0%
! GGATACAATACAAGTTTGTT+TGG + chr8_1:3745534-3745553 None:intergenic 30.0%
!! TCAGAGAGTTGTAGCTTTAA+AGG - chr8_1:3738373-3738392 Msa1173340:three_prime_UTR 35.0%
!! CAGAGAGTTGTAGCTTTAAA+GGG - chr8_1:3738374-3738393 Msa1173340:three_prime_UTR 35.0%
!!! GATTTTGATAGTGGAAGTTC+AGG - chr8_1:3738409-3738428 Msa1173340:three_prime_UTR 35.0%
! GCCTTTTGTTGAAAAGAATG+AGG - chr8_1:3738570-3738589 Msa1173340:three_prime_UTR 35.0%
!!! TGCAAGGAAGAGTTTTAGAT+AGG - chr8_1:3738593-3738612 Msa1173340:three_prime_UTR 35.0%
!!! GCAAGGAAGAGTTTTAGATA+GGG - chr8_1:3738594-3738613 Msa1173340:three_prime_UTR 35.0%
TTGATAAGTTTCGGAAGGAA+AGG - chr8_1:3738629-3738648 Msa1173340:three_prime_UTR 35.0%
TGGACGATGATTCTGTTTAT+AGG - chr8_1:3738680-3738699 Msa1173340:three_prime_UTR 35.0%
GATGATTCTGTTTATAGGAG+AGG - chr8_1:3738685-3738704 Msa1173340:three_prime_UTR 35.0%
TCTGTTTATAGGAGAGGTAA+TGG - chr8_1:3738691-3738710 Msa1173340:three_prime_UTR 35.0%
GGACTGTCTTCAATATCAAA+AGG + chr8_1:3738733-3738752 None:intergenic 35.0%
ATATTGAAGACAGTCCTGAA+AGG - chr8_1:3738737-3738756 Msa1173340:three_prime_UTR 35.0%
TATTGAAGACAGTCCTGAAA+GGG - chr8_1:3738738-3738757 Msa1173340:three_prime_UTR 35.0%
! GTCTTCAAGATATTTGCTAC+AGG + chr8_1:3738838-3738857 None:intergenic 35.0%
!! GTTTACACTGTTGGTTTAGT+TGG - chr8_1:3738917-3738936 Msa1173340:intron 35.0%
GATAAGAGACGAAGCATAAA+AGG + chr8_1:3739177-3739196 None:intergenic 35.0%
GTATTCATTAAAAAGGGAGC+TGG + chr8_1:3739259-3739278 None:intergenic 35.0%
TATCCACTTTGTAATGCAAG+CGG - chr8_1:3739279-3739298 Msa1173340:three_prime_UTR 35.0%
AGACTAATGTTGTCATGTCT+TGG - chr8_1:3739344-3739363 Msa1173340:intron 35.0%
TAATGTTGTCATGTCTTGGA+GGG - chr8_1:3739348-3739367 Msa1173340:intron 35.0%
TGCGAGGTAAATTTCATTCT+TGG - chr8_1:3739380-3739399 Msa1173340:intron 35.0%
! TTTGCCTCATTTTCCATGTT+TGG + chr8_1:3739640-3739659 None:intergenic 35.0%
GAAAATGAGGCAAATAGACT+AGG - chr8_1:3739646-3739665 Msa1173340:intron 35.0%
CTCTCACTCTTATGATTATG+TGG - chr8_1:3739669-3739688 Msa1173340:intron 35.0%
! TTGCATAAAAGTGTGCTTCA+GGG + chr8_1:3739818-3739837 None:intergenic 35.0%
! TTTGCATAAAAGTGTGCTTC+AGG + chr8_1:3739819-3739838 None:intergenic 35.0%
ATATCAACTAATGCCACAGA+TGG - chr8_1:3739877-3739896 Msa1173340:intron 35.0%
! ACATTTGCTACAATGGTTTG+TGG - chr8_1:3739987-3740006 Msa1173340:three_prime_UTR 35.0%
! TGGTAATGTTACATCAGAAC+CGG - chr8_1:3740051-3740070 Msa1173340:three_prime_UTR 35.0%
AAAGGTAAATAAAGAGGGGA+AGG + chr8_1:3740117-3740136 None:intergenic 35.0%
!! TCTTGTTTGCTTTTGCTTTC+CGG - chr8_1:3740180-3740199 Msa1173340:intron 35.0%
CAAAATGAAAGGAAACTCAC+CGG + chr8_1:3740202-3740221 None:intergenic 35.0%
TGCATATCTCAGAAGACAAT+AGG - chr8_1:3740357-3740376 Msa1173340:intron 35.0%
AGGCATCATAGATGAGAATT+GGG + chr8_1:3740477-3740496 None:intergenic 35.0%
TAGGCATCATAGATGAGAAT+TGG + chr8_1:3740478-3740497 None:intergenic 35.0%
!! ACCTAAAAGTGCTGTTAGAA+TGG - chr8_1:3740582-3740601 Msa1173340:intron 35.0%
!!! TTCATGCTGCTTTGTGATTT+TGG - chr8_1:3740679-3740698 Msa1173340:intron 35.0%
!! ATGTACATTGATTCGCACTT+AGG - chr8_1:3740923-3740942 Msa1173340:intron 35.0%
! TACTTCTGTAGGGTATCTTT+GGG - chr8_1:3741003-3741022 Msa1173340:intron 35.0%
!! TAAAAAGGAGGGTTTTTGGA+GGG + chr8_1:3741199-3741218 None:intergenic 35.0%
!! TTAAAAAGGAGGGTTTTTGG+AGG + chr8_1:3741200-3741219 None:intergenic 35.0%
GGATAGAGATCTTAAAAAGG+AGG + chr8_1:3741211-3741230 None:intergenic 35.0%
CAACTCCATTATATCCTATC+AGG - chr8_1:3741329-3741348 Msa1173340:three_prime_UTR 35.0%
!!! CTGTCTGTATGCTACTTTTT+TGG + chr8_1:3741390-3741409 None:intergenic 35.0%
TTATTGCCTGTTCGAAATTC+TGG + chr8_1:3741474-3741493 None:intergenic 35.0%
GGTTTCAAAATGATTGGAAC+AGG - chr8_1:3741539-3741558 Msa1173340:three_prime_UTR 35.0%
AAGTGCATTGTTCAAGCTTT+AGG - chr8_1:3741632-3741651 Msa1173340:three_prime_UTR 35.0%
ATAATGCAGATCTTACACGA+GGG + chr8_1:3742107-3742126 None:intergenic 35.0%
AATAATGCAGATCTTACACG+AGG + chr8_1:3742108-3742127 None:intergenic 35.0%
TCGTGTAAGATCTGCATTAT+TGG - chr8_1:3742107-3742126 Msa1173340:three_prime_UTR 35.0%
GAACAAAGCGATTAAACTGT+AGG + chr8_1:3742213-3742232 None:intergenic 35.0%
!! TGACAACTTTGAAGGGTTTT+GGG + chr8_1:3742315-3742334 None:intergenic 35.0%
!! TTGACAACTTTGAAGGGTTT+TGG + chr8_1:3742316-3742335 None:intergenic 35.0%
GTTGATCCATAAGAAACAAG+GGG - chr8_1:3742344-3742363 Msa1173340:intron 35.0%
TTGATCCATAAGAAACAAGG+GGG - chr8_1:3742345-3742364 Msa1173340:intron 35.0%
! AATTTCCCCCTTGTTTCTTA+TGG + chr8_1:3742353-3742372 None:intergenic 35.0%
TCACATTCACTTCTATGCTT+CGG + chr8_1:3742476-3742495 None:intergenic 35.0%
GCATAGAAGTGAATGTGAAA+AGG - chr8_1:3742478-3742497 Msa1173340:intron 35.0%
GGTAAAAGTGGAGAACAATT+TGG - chr8_1:3742499-3742518 Msa1173340:intron 35.0%
AAAAGTGGAGAACAATTTGG+TGG - chr8_1:3742502-3742521 Msa1173340:intron 35.0%
ACAATAATAGGGATCGTATC+CGG + chr8_1:3742635-3742654 None:intergenic 35.0%
TTTGTGTGTGTATGTGTAGA+TGG + chr8_1:3742676-3742695 None:intergenic 35.0%
CAAATGGCAATAGGATAACT+TGG + chr8_1:3742905-3742924 None:intergenic 35.0%
! GTCTTTTAGCAAATGGCAAT+AGG + chr8_1:3742914-3742933 None:intergenic 35.0%
!! AGTTGGTGTCTTTTAGCAAA+TGG + chr8_1:3742921-3742940 None:intergenic 35.0%
TTGCTAAAAGACACCTCTAA+AGG - chr8_1:3743009-3743028 Msa1173340:intron 35.0%
TGCTAAAAGACACCTCTAAA+GGG - chr8_1:3743010-3743029 Msa1173340:intron 35.0%
ATAAGACTGGCAATGTTCTA+TGG - chr8_1:3743237-3743256 Msa1173340:intron 35.0%
! TAAGAGGTATAGAAAGACCA+AGG - chr8_1:3743522-3743541 Msa1173340:intron 35.0%
GATAAACACAGGCAAAGAAA+AGG + chr8_1:3743741-3743760 None:intergenic 35.0%
!! TTTTTCAGACCTGAAGTCAT+TGG + chr8_1:3743811-3743830 None:intergenic 35.0%
AGTTTCTTGCTGATGTTCTT+TGG - chr8_1:3743953-3743972 Msa1173340:intron 35.0%
!!! TGGAACACTTGCCTTTTTTA+TGG - chr8_1:3743976-3743995 Msa1173340:three_prime_UTR 35.0%
!!! ACACTTGCCTTTTTTATGGT+AGG - chr8_1:3743980-3743999 Msa1173340:three_prime_UTR 35.0%
ACTTTCATGATGCGTTTACT+TGG - chr8_1:3744398-3744417 Msa1173340:intron 35.0%
CACCAACCATAATAGTGAAT+AGG + chr8_1:3744438-3744457 None:intergenic 35.0%
CTTCAATATTCACGTGATTC+AGG + chr8_1:3745141-3745160 None:intergenic 35.0%
CTGAATCACGTGAATATTGA+AGG - chr8_1:3745139-3745158 Msa1173340:CDS 35.0%
AAGCAATGATTTCGAAGAAG+AGG - chr8_1:3745165-3745184 Msa1173340:CDS 35.0%
AGCAATGATTTCGAAGAAGA+GGG - chr8_1:3745166-3745185 Msa1173340:CDS 35.0%
GGACACAAAAATATCTTCCA+GGG - chr8_1:3745187-3745206 Msa1173340:CDS 35.0%
ACCAATACAGTGATTGGTAA+TGG - chr8_1:3745430-3745449 Msa1173340:CDS 35.0%
ACCATTACCAATCACTGTAT+TGG + chr8_1:3745434-3745453 None:intergenic 35.0%
!! TTTTGGGGAAAAAATGTTGG+AGG - chr8_1:3745470-3745489 Msa1173340:CDS 35.0%
TTTGGGGAAAAAATGTTGGA+GGG - chr8_1:3745471-3745490 Msa1173340:CDS 35.0%
GGTCAATTTCGTTGTTACAT+TGG - chr8_1:3745492-3745511 Msa1173340:CDS 35.0%
!! ACAAGTTTGTTTGGTGTTGA+AGG + chr8_1:3745525-3745544 None:intergenic 35.0%
! TGTGACGACGATGATAATGA+TGG - chr8_1:3738469-3738488 Msa1173340:three_prime_UTR 40.0%
!! GATGATAATGATGGTGGTGA+TGG - chr8_1:3738478-3738497 Msa1173340:three_prime_UTR 40.0%
!! ATAATGATGGTGGTGATGGA+AGG - chr8_1:3738482-3738501 Msa1173340:three_prime_UTR 40.0%
!! TAATGATGGTGGTGATGGAA+GGG - chr8_1:3738483-3738502 Msa1173340:three_prime_UTR 40.0%
GGATCAGAAATTAGGTGATG+AGG - chr8_1:3738513-3738532 Msa1173340:three_prime_UTR 40.0%
GTTGAAAAGAATGAGGTGCA+AGG - chr8_1:3738577-3738596 Msa1173340:three_prime_UTR 40.0%
ATCGTACTAGCACCATTCAT+CGG + chr8_1:3738661-3738680 None:intergenic 40.0%
ATTGAAGACAGTCCTGAAAG+GGG - chr8_1:3738739-3738758 Msa1173340:three_prime_UTR 40.0%
GTGTAAACGAGGAACTTACA+AGG + chr8_1:3738905-3738924 None:intergenic 40.0%
AAGTTCCTCGTTTACACTGT+TGG - chr8_1:3738908-3738927 Msa1173340:intron 40.0%
CTAAACCAACAGTGTAAACG+AGG + chr8_1:3738916-3738935 None:intergenic 40.0%
AAGTCTGTTGGGAGATCATA+TGG - chr8_1:3739225-3739244 Msa1173340:three_prime_UTR 40.0%
AGTCTGTTGGGAGATCATAT+GGG - chr8_1:3739226-3739245 Msa1173340:three_prime_UTR 40.0%
CTAATGTTGTCATGTCTTGG+AGG - chr8_1:3739347-3739366 Msa1173340:intron 40.0%
!!! TGGAGGGATTATTTTTTGCG+AGG - chr8_1:3739364-3739383 Msa1173340:intron 40.0%
AATGTTACGTGGTCCAAACA+TGG - chr8_1:3739624-3739643 Msa1173340:intron 40.0%
TGGTCCAAACATGGAAAATG+AGG - chr8_1:3739633-3739652 Msa1173340:intron 40.0%
! CTCTGTCACATTTGCTACAA+TGG - chr8_1:3739980-3739999 Msa1173340:three_prime_UTR 40.0%
AATGGAGCAAATGTAGAGTC+CGG + chr8_1:3740073-3740092 None:intergenic 40.0%
GCAAACAAGAGGAGAAAGAT+TGG + chr8_1:3740170-3740189 None:intergenic 40.0%
GGAAAGCAAAAGCAAACAAG+AGG + chr8_1:3740181-3740200 None:intergenic 40.0%
ATTTAAGGAGCTGCATTGCT+AGG - chr8_1:3740278-3740297 Msa1173340:intron 40.0%
TGGGAGCGATTAATGCATAA+AGG - chr8_1:3740309-3740328 Msa1173340:intron 40.0%
! GCCATTCTAACAGCACTTTT+AGG + chr8_1:3740586-3740605 None:intergenic 40.0%
!! GTTGGTTTGAATTGGAAGGT+TGG - chr8_1:3740791-3740810 Msa1173340:intron 40.0%
TTCAAAAGATCAAGCCAGCA+TGG - chr8_1:3740948-3740967 Msa1173340:intron 40.0%
AGGTACATCTGTACTTCTGT+AGG - chr8_1:3740992-3741011 Msa1173340:intron 40.0%
GGTACATCTGTACTTCTGTA+GGG - chr8_1:3740993-3741012 Msa1173340:intron 40.0%
! GTACTTCTGTAGGGTATCTT+TGG - chr8_1:3741002-3741021 Msa1173340:intron 40.0%
! TATCTTTGGGTGGAGGATTT+TGG - chr8_1:3741016-3741035 Msa1173340:intron 40.0%
TGGATGTCAACAACAACCTT+TGG + chr8_1:3741370-3741389 None:intergenic 40.0%
GTAGCATACAGACAGAAGTT+CGG - chr8_1:3741395-3741414 Msa1173340:three_prime_UTR 40.0%
CAGTTACCAGAATTTCGAAC+AGG - chr8_1:3741465-3741484 Msa1173340:three_prime_UTR 40.0%
! TATGACTCAGATCCTTTTGC+AGG - chr8_1:3741795-3741814 Msa1173340:three_prime_UTR 40.0%
! ATTATTGTTGGGAGCGTATC+TGG - chr8_1:3741846-3741865 Msa1173340:three_prime_UTR 40.0%
TGTAGGAAGGAGGTAAAAGA+GGG + chr8_1:3741981-3742000 None:intergenic 40.0%
ATGTAGGAAGGAGGTAAAAG+AGG + chr8_1:3741982-3742001 None:intergenic 40.0%
AGTCAAGAGATGATGTAGGA+AGG + chr8_1:3741994-3742013 None:intergenic 40.0%
GATGAGTCAAGAGATGATGT+AGG + chr8_1:3741998-3742017 None:intergenic 40.0%
!! TTTGCATTTTTCAGAAGGGG+AGG + chr8_1:3742036-3742055 None:intergenic 40.0%
CCGTGTTTGACAACTTTGAA+GGG + chr8_1:3742322-3742341 None:intergenic 40.0%
CCCTTCAAAGTTGTCAAACA+CGG - chr8_1:3742319-3742338 Msa1173340:intron 40.0%
ACCGTGTTTGACAACTTTGA+AGG + chr8_1:3742323-3742342 None:intergenic 40.0%
AATGTTCAGTTAGCGATAGC+AGG + chr8_1:3742721-3742740 None:intergenic 40.0%
! CTTGCTTCATTTTCTTGGGT+TGG - chr8_1:3742741-3742760 Msa1173340:intron 40.0%
ATGTGCAAGGAACTTACCAT+AGG + chr8_1:3742824-3742843 None:intergenic 40.0%
AAGTGGATAATCACACCTTG+AGG - chr8_1:3742980-3742999 Msa1173340:intron 40.0%
GATAGAAAGTTGAGAGTGAG+AGG - chr8_1:3743379-3743398 Msa1173340:intron 40.0%
GCAAGTGCCTAAATCATCTA+AGG + chr8_1:3743439-3743458 None:intergenic 40.0%
TTGCAAAGAAGACCAGAAGA+AGG - chr8_1:3743455-3743474 Msa1173340:intron 40.0%
!!! AAAGCCTTTTTCAACCACGT+GGG + chr8_1:3743650-3743669 None:intergenic 40.0%
ACATAGCTCATCAAGGTAAG+TGG + chr8_1:3743835-3743854 None:intergenic 40.0%
TTCTTGCTGATGTTCTTTGG+TGG - chr8_1:3743956-3743975 Msa1173340:intron 40.0%
! TATATGATTGGTCCAGTGGA+TGG - chr8_1:3744259-3744278 Msa1173340:intron 40.0%
! GTTTCATGCTGTTTGTGTGT+AGG - chr8_1:3744363-3744382 Msa1173340:intron 40.0%
GATGCGTTTACTTGGTTGAA+AGG - chr8_1:3744406-3744425 Msa1173340:intron 40.0%
GGCCTATTCACTATTATGGT+TGG - chr8_1:3744433-3744452 Msa1173340:intron 40.0%
GTGGCATCTGAAAACCTATA+TGG - chr8_1:3744703-3744722 Msa1173340:intron 40.0%
GGGACACAAAAATATCTTCC+AGG - chr8_1:3745186-3745205 Msa1173340:CDS 40.0%
! GACAGAATAGAAGAGAGCAT+TGG + chr8_1:3745238-3745257 None:intergenic 40.0%
!! TTTTGAGAATGTAAGGGGAG+GGG + chr8_1:3745563-3745582 None:intergenic 40.0%
!! CTTTTGAGAATGTAAGGGGA+GGG + chr8_1:3745564-3745583 None:intergenic 40.0%
!! GGAGCTTTTGAGAATGTAAG+GGG + chr8_1:3745568-3745587 None:intergenic 40.0%
!! GGGAGCTTTTGAGAATGTAA+GGG + chr8_1:3745569-3745588 None:intergenic 40.0%
!! GATAGTGGAAGTTCAGGATC+CGG - chr8_1:3738415-3738434 Msa1173340:three_prime_UTR 45.0%
GAAGTTCAGGATCCGGTATT+CGG - chr8_1:3738422-3738441 Msa1173340:three_prime_UTR 45.0%
! GACGACGATGATAATGATGG+TGG - chr8_1:3738472-3738491 Msa1173340:three_prime_UTR 45.0%
!!! TGGTGATGGAAGGGTGATTT+TGG - chr8_1:3738492-3738511 Msa1173340:three_prime_UTR 45.0%
! GATGAATGGTGCTAGTACGA+TGG - chr8_1:3738660-3738679 Msa1173340:three_prime_UTR 45.0%
! TGGTGGTGACTCGTATGATT+CGG - chr8_1:3738768-3738787 Msa1173340:three_prime_UTR 45.0%
GAACCGCTTGCATTACAAAG+TGG + chr8_1:3739285-3739304 None:intergenic 45.0%
!!! ATTGGTTGTGCCGTTTTCTG+TGG - chr8_1:3739751-3739770 Msa1173340:three_prime_UTR 45.0%
TGAAAGGCAAAGTCCATCTG+TGG + chr8_1:3739893-3739912 None:intergenic 45.0%
ATAGCTGTTCCAAGAGCAGT+CGG + chr8_1:3739924-3739943 None:intergenic 45.0%
GGTTTGAATTGGAAGGTTGG+AGG - chr8_1:3740794-3740813 Msa1173340:intron 45.0%
TCCATCGGCATATTACTGAC+AGG - chr8_1:3740855-3740874 Msa1173340:intron 45.0%
ACCTGTCAGTAATATGCCGA+TGG + chr8_1:3740859-3740878 None:intergenic 45.0%
TTCCTACAAGCTCAGTGGTT+AGG - chr8_1:3740972-3740991 Msa1173340:intron 45.0%
TACCTAACCACTGAGCTTGT+AGG + chr8_1:3740977-3740996 None:intergenic 45.0%
! TTCTGTAGGGTATCTTTGGG+TGG - chr8_1:3741006-3741025 Msa1173340:intron 45.0%
! TACTACTGTAAGGGTGTGCT+TGG + chr8_1:3741232-3741251 None:intergenic 45.0%
AGCGATATGGCATGCTAAGA+TGG + chr8_1:3741281-3741300 None:intergenic 45.0%
TTAGCATGCCATATCGCTCT+AGG - chr8_1:3741283-3741302 Msa1173340:three_prime_UTR 45.0%
CAATCCTACCTAGAGCGATA+TGG + chr8_1:3741294-3741313 None:intergenic 45.0%
! CATATCGCTCTAGGTAGGAT+TGG - chr8_1:3741292-3741311 Msa1173340:three_prime_UTR 45.0%
! ATGCTTGCTGCTGTTATGTC+TGG - chr8_1:3741760-3741779 Msa1173340:three_prime_UTR 45.0%
! TGCTTGCTGCTGTTATGTCT+GGG - chr8_1:3741761-3741780 Msa1173340:three_prime_UTR 45.0%
TAAGAGGAAGAATTGAGCGG+AGG + chr8_1:3741958-3741977 None:intergenic 45.0%
GGGTAAGAGGAAGAATTGAG+CGG + chr8_1:3741961-3741980 None:intergenic 45.0%
AGGAGGTAAAAGAGGGTAAG+AGG + chr8_1:3741974-3741993 None:intergenic 45.0%
CAAGAGATGATGTAGGAAGG+AGG + chr8_1:3741991-3742010 None:intergenic 45.0%
TTCAGAAGGGGAGGAAGATA+GGG + chr8_1:3742027-3742046 None:intergenic 45.0%
TTTCAGAAGGGGAGGAAGAT+AGG + chr8_1:3742028-3742047 None:intergenic 45.0%
ACTAGGCTACCTGTGAAGTA+TGG + chr8_1:3742138-3742157 None:intergenic 45.0%
! AGTGGAGAACAATTTGGTGG+AGG - chr8_1:3742505-3742524 Msa1173340:intron 45.0%
! GTGGAGAACAATTTGGTGGA+GGG - chr8_1:3742506-3742525 Msa1173340:intron 45.0%
! TGGAGAACAATTTGGTGGAG+GGG - chr8_1:3742507-3742526 Msa1173340:intron 45.0%
GATAATCACACCTTGAGGTG+TGG - chr8_1:3742985-3743004 Msa1173340:intron 45.0%
! TTTTAGCAAGCCACACCTCA+AGG + chr8_1:3742998-3743017 None:intergenic 45.0%
TGCTAGAAGACACCCTTTAG+AGG + chr8_1:3743025-3743044 None:intergenic 45.0%
GTGTGGACAAAATCCATGAC+TGG + chr8_1:3743213-3743232 None:intergenic 45.0%
TGTCCACACAGCTATAAGAC+TGG - chr8_1:3743224-3743243 Msa1173340:intron 45.0%
! TTGCCAGTCTTATAGCTGTG+TGG + chr8_1:3743230-3743249 None:intergenic 45.0%
CGAATGCAACAGTTTATGCG+TGG - chr8_1:3743318-3743337 Msa1173340:intron 45.0%
GACCAGAAGAAGGCCTAATA+CGG - chr8_1:3743465-3743484 Msa1173340:intron 45.0%
AGAAGAAGGCCTAATACGGA+CGG - chr8_1:3743469-3743488 Msa1173340:intron 45.0%
TGCGATTTACCGTCCGTATT+AGG + chr8_1:3743481-3743500 None:intergenic 45.0%
TCCATATAACTAACCCCACG+TGG - chr8_1:3743633-3743652 Msa1173340:intron 45.0%
!! ACCACGTGGGGTTAGTTATA+TGG + chr8_1:3743637-3743656 None:intergenic 45.0%
TAACCCCACGTGGTTGAAAA+AGG - chr8_1:3743643-3743662 Msa1173340:intron 45.0%
!!! AAGCCTTTTTCAACCACGTG+GGG + chr8_1:3743649-3743668 None:intergenic 45.0%
!!! CAAAGCCTTTTTCAACCACG+TGG + chr8_1:3743651-3743670 None:intergenic 45.0%
CACAGGCAAAGAAAAGGATC+AGG + chr8_1:3743735-3743754 None:intergenic 45.0%
TGGAGCTACATAGCTCATCA+AGG + chr8_1:3743842-3743861 None:intergenic 45.0%
GAGCTATGTAGCTCCAGTAA+TGG - chr8_1:3743846-3743865 Msa1173340:intron 45.0%
CACAATAGCAGGGGTTGTTA+AGG - chr8_1:3744185-3744204 Msa1173340:intron 45.0%
AATAGCAGGGGTTGTTAAGG+AGG - chr8_1:3744188-3744207 Msa1173340:intron 45.0%
! TGCTGTTTGTGTGTAGGTTG+CGG - chr8_1:3744369-3744388 Msa1173340:intron 45.0%
AGATACCAGAAGCTTCATGC+AGG - chr8_1:3744603-3744622 Msa1173340:intron 45.0%
GAGGAGATGGATGAACAAGA+TGG - chr8_1:3744681-3744700 Msa1173340:intron 45.0%
GAGATGGATGAACAAGATGG+TGG - chr8_1:3744684-3744703 Msa1173340:intron 45.0%
!! TGGCGTTGATGATATGGCTA+AGG + chr8_1:3745218-3745237 None:intergenic 45.0%
!! GAGCATTGGCGTTGATGATA+TGG + chr8_1:3745224-3745243 None:intergenic 45.0%
TTTGAGAATGTAAGGGGAGG+GGG + chr8_1:3745562-3745581 None:intergenic 45.0%
!! GCTTTTGAGAATGTAAGGGG+AGG + chr8_1:3745565-3745584 None:intergenic 45.0%
!! GGGGAGCTTTTGAGAATGTA+AGG + chr8_1:3745570-3745589 None:intergenic 45.0%
!! TATATAAATATACAATAATA+GGG + chr8_1:3742646-3742665 None:intergenic 5.0%
!! ATATATAAATATACAATAAT+AGG + chr8_1:3742647-3742666 None:intergenic 5.0%
!!! ATTGTATTAAAATATTTTTT+TGG - chr8_1:3745373-3745392 Msa1173340:CDS 5.0%
CGAAAGCTCTCTCCGAATAC+CGG + chr8_1:3738437-3738456 None:intergenic 50.0%
! GAGAGCTTTCGTTTTCGCGT+TGG - chr8_1:3738446-3738465 Msa1173340:three_prime_UTR 50.0%
! GAAAGGATCGTGCCGATGAA+TGG - chr8_1:3738646-3738665 Msa1173340:three_prime_UTR 50.0%
AGTCCTGAAAGGGGAACAGT+TGG - chr8_1:3738748-3738767 Msa1173340:three_prime_UTR 50.0%
GGTGGTGACTCGTATGATTC+GGG - chr8_1:3738769-3738788 Msa1173340:three_prime_UTR 50.0%
GTGGTGACTCGTATGATTCG+GGG - chr8_1:3738770-3738789 Msa1173340:three_prime_UTR 50.0%
! TGGTGACTCGTATGATTCGG+GGG - chr8_1:3738771-3738790 Msa1173340:three_prime_UTR 50.0%
TAGCTGTTCCAAGAGCAGTC+GGG + chr8_1:3739923-3739942 None:intergenic 50.0%
GACTGCTCTTGGAACAGCTA+TGG - chr8_1:3739923-3739942 Msa1173340:intron 50.0%
ATGGCTTCCTACAAGCTCAG+TGG - chr8_1:3740967-3740986 Msa1173340:intron 50.0%
! TGTAGGGTATCTTTGGGTGG+AGG - chr8_1:3741009-3741028 Msa1173340:intron 50.0%
! CTTTGGGTGGAGGATTTTGG+AGG - chr8_1:3741019-3741038 Msa1173340:intron 50.0%
!! TGGAGGATTTTGGAGGAGAG+TGG - chr8_1:3741026-3741045 Msa1173340:intron 50.0%
!! GGAGGATTTTGGAGGAGAGT+GGG - chr8_1:3741027-3741046 Msa1173340:intron 50.0%
!! GAGGATTTTGGAGGAGAGTG+GGG - chr8_1:3741028-3741047 Msa1173340:intron 50.0%
!! AGGATTTTGGAGGAGAGTGG+GGG - chr8_1:3741029-3741048 Msa1173340:intron 50.0%
! CATGCCATATCGCTCTAGGT+AGG - chr8_1:3741287-3741306 Msa1173340:three_prime_UTR 50.0%
CTGTTATGTCTGGGTTTCGC+TGG - chr8_1:3741770-3741789 Msa1173340:three_prime_UTR 50.0%
AGGAAGAATTGAGCGGAGGA+GGG + chr8_1:3741954-3741973 None:intergenic 50.0%
CAACACAGTGTGCAGTTTGG+CGG + chr8_1:3742082-3742101 None:intergenic 50.0%
GCACAACACAGTGTGCAGTT+TGG + chr8_1:3742085-3742104 None:intergenic 50.0%
TTGGACCGTCCATACTTCAC+AGG - chr8_1:3742126-3742145 Msa1173340:three_prime_UTR 50.0%
GGCTACCTGTGAAGTATGGA+CGG + chr8_1:3742134-3742153 None:intergenic 50.0%
GCTATGTTTAACGGTGACGC+CGG - chr8_1:3742436-3742455 Msa1173340:intron 50.0%
ACTTCTATGCTTCGGCCTCA+AGG + chr8_1:3742468-3742487 None:intergenic 50.0%
GTCCGTATTAGGCCTTCTTC+TGG + chr8_1:3743470-3743489 None:intergenic 50.0%
TACGGACGGTAAATCGCATG+TGG - chr8_1:3743483-3743502 Msa1173340:intron 50.0%
TGTAGCTCCAGTAATGGCTG+TGG - chr8_1:3743852-3743871 Msa1173340:intron 50.0%
CCCTGCTATTGTGACTGTGA+CGG + chr8_1:3744178-3744197 None:intergenic 50.0%
CCGTCACAGTCACAATAGCA+GGG - chr8_1:3744175-3744194 Msa1173340:intron 50.0%
CGTCACAGTCACAATAGCAG+GGG - chr8_1:3744176-3744195 Msa1173340:intron 50.0%
TAAGGAGGCCGTCACCATAT+TGG - chr8_1:3744203-3744222 Msa1173340:intron 50.0%
ACGAGTAATAGGCCATCCAC+TGG + chr8_1:3744274-3744293 None:intergenic 50.0%
TGTCACCTGCATGAAGCTTC+TGG + chr8_1:3744611-3744630 None:intergenic 50.0%
GCTTCATGCAGGTGACAATG+TGG - chr8_1:3744614-3744633 Msa1173340:intron 50.0%
ATATGGCTAAGGCAAGTCCC+TGG + chr8_1:3745207-3745226 None:intergenic 50.0%
CCACCAACTGTTCCCCTTTC+AGG + chr8_1:3738754-3738773 None:intergenic 55.0%
CCTGAAAGGGGAACAGTTGG+TGG - chr8_1:3738751-3738770 Msa1173340:three_prime_UTR 55.0%
! GGTGACTCGTATGATTCGGG+GGG - chr8_1:3738772-3738791 Msa1173340:three_prime_UTR 55.0%
! TATGATTCGGGGGGTGGTGT+TGG - chr8_1:3738781-3738800 Msa1173340:three_prime_UTR 55.0%
GCAGTCGGGACAACTGTGAA+AGG + chr8_1:3739909-3739928 None:intergenic 55.0%
ACAGTTGTCCCGACTGCTCT+TGG - chr8_1:3739912-3739931 Msa1173340:intron 55.0%
GAGCTTGTAGGAAGCCATGC+TGG + chr8_1:3740965-3740984 None:intergenic 55.0%
!! GGATTTTGGAGGAGAGTGGG+GGG - chr8_1:3741030-3741049 Msa1173340:intron 55.0%
GAGGAAGAATTGAGCGGAGG+AGG + chr8_1:3741955-3741974 None:intergenic 55.0%
GGGGAGGAAGATAGGGTTGA+TGG + chr8_1:3742020-3742039 None:intergenic 55.0%
TTCGGCCTCAAGGTTGTAGC+CGG + chr8_1:3742458-3742477 None:intergenic 55.0%
GCCGTCACAGTCACAATAGC+AGG - chr8_1:3744174-3744193 Msa1173340:intron 55.0%
AGAATGTAAGGGGAGGGGGT+AGG + chr8_1:3745558-3745577 None:intergenic 55.0%
! GACTCGTATGATTCGGGGGG+TGG - chr8_1:3738775-3738794 Msa1173340:three_prime_UTR 60.0%
! TGACGCCGGCTACAACCTTG+AGG - chr8_1:3742450-3742469 Msa1173340:intron 60.0%
GCGGTTGCCACAGCCATTAC+TGG + chr8_1:3743862-3743881 None:intergenic 60.0%
ATGTAAGGGGAGGGGGTAGG+AGG + chr8_1:3745555-3745574 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 3738352 3745609 3738352 ID=Msa1173340;Name=Msa1173340
chr8_1 mRNA 3738352 3745609 3738352 ID=Msa1173340-mRNA-1;Parent=Msa1173340;Name=Msa1173340-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.88|0.9|1|0.66|0.6|10|2285|175
chr8_1 exon 3738352 3738800 3738352 ID=Msa1173340-mRNA-1:exon:1330;Parent=Msa1173340-mRNA-1
chr8_1 exon 3739214 3739356 3739214 ID=Msa1173340-mRNA-1:exon:1329;Parent=Msa1173340-mRNA-1
chr8_1 exon 3739482 3739576 3739482 ID=Msa1173340-mRNA-1:exon:1328;Parent=Msa1173340-mRNA-1
chr8_1 exon 3739737 3739823 3739737 ID=Msa1173340-mRNA-1:exon:1327;Parent=Msa1173340-mRNA-1
chr8_1 exon 3739964 3740140 3739964 ID=Msa1173340-mRNA-1:exon:1326;Parent=Msa1173340-mRNA-1
chr8_1 exon 3741135 3742245 3741135 ID=Msa1173340-mRNA-1:exon:1325;Parent=Msa1173340-mRNA-1
chr8_1 exon 3743085 3743152 3743085 ID=Msa1173340-mRNA-1:exon:1324;Parent=Msa1173340-mRNA-1
chr8_1 exon 3743760 3743809 3743760 ID=Msa1173340-mRNA-1:exon:1323;Parent=Msa1173340-mRNA-1
chr8_1 exon 3743960 3744065 3743960 ID=Msa1173340-mRNA-1:exon:1322;Parent=Msa1173340-mRNA-1
chr8_1 exon 3745083 3745609 3745083 ID=Msa1173340-mRNA-1:exon:1321;Parent=Msa1173340-mRNA-1
chr8_1 CDS 3745083 3745609 3745083 ID=Msa1173340-mRNA-1:cds;Parent=Msa1173340-mRNA-1
chr8_1 CDS 3744065 3744065 3744065 ID=Msa1173340-mRNA-1:cds;Parent=Msa1173340-mRNA-1
chr8_1 three_prime_UTR 3743960 3744064 3743960 ID=Msa1173340-mRNA-1:three_prime_utr;Parent=Msa1173340-mRNA-1
chr8_1 three_prime_UTR 3743760 3743809 3743760 ID=Msa1173340-mRNA-1:three_prime_utr;Parent=Msa1173340-mRNA-1
chr8_1 three_prime_UTR 3743085 3743152 3743085 ID=Msa1173340-mRNA-1:three_prime_utr;Parent=Msa1173340-mRNA-1
chr8_1 three_prime_UTR 3741135 3742245 3741135 ID=Msa1173340-mRNA-1:three_prime_utr;Parent=Msa1173340-mRNA-1
chr8_1 three_prime_UTR 3739964 3740140 3739964 ID=Msa1173340-mRNA-1:three_prime_utr;Parent=Msa1173340-mRNA-1
chr8_1 three_prime_UTR 3739737 3739823 3739737 ID=Msa1173340-mRNA-1:three_prime_utr;Parent=Msa1173340-mRNA-1
chr8_1 three_prime_UTR 3739482 3739576 3739482 ID=Msa1173340-mRNA-1:three_prime_utr;Parent=Msa1173340-mRNA-1
chr8_1 three_prime_UTR 3739214 3739356 3739214 ID=Msa1173340-mRNA-1:three_prime_utr;Parent=Msa1173340-mRNA-1
chr8_1 three_prime_UTR 3738352 3738800 3738352 ID=Msa1173340-mRNA-1:three_prime_utr;Parent=Msa1173340-mRNA-1
Gene Sequence

>Msa1173340

ATGGTACACATTGAATTAGATTCAGAGAGTTGTAGCTTTAAAGGGATTGCTATTGATGATTTTGATAGTGGAAGTTCAGGATCCGGTATTCGGAGAGAGCTTTCGTTTTCGCGTTGGTGTGACGACGATGATAATGATGGTGGTGATGGAAGGGTGATTTTGGATCAGAAATTAGGTGATGAGGATGTTATTGTAGAAGAAGACGCTGTTTTTGAGTTGCCTTTTGTTGAAAAGAATGAGGTGCAAGGAAGAGTTTTAGATAGGGAGAGATTTTCTTTTGATAAGTTTCGGAAGGAAAGGATCGTGCCGATGAATGGTGCTAGTACGATGGACGATGATTCTGTTTATAGGAGAGGTAATGGATCTGAGAAGTATGTGCCTTTTGATATTGAAGACAGTCCTGAAAGGGGAACAGTTGGTGGTGACTCGTATGATTCGGGGGGTGGTGTTGGATCACTGCATAAAAGCTCTGAAAATACTGTTCCTGTAGCAAATATCTTGAAGACTATGTTTTTCATATTTGTGTGA
Protein sequence

>Msa1173340

MVHIELDSESCSFKGIAIDDFDSGSSGSGIRRELSFSRWCDDDDNDGGDGRVILDQKLGDEDVIVEEDAVFELPFVEKNEVQGRVLDRERFSFDKFRKERIVPMNGASTMDDDSVYRRGNGSEKYVPFDIEDSPERGTVGGDSYDSGGGVGSLHKSSENTVPVANILKTMFFIFV*