AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550010 MtrunA17_Chr4g0034871 95.631 206 0 1 1 197 1 206 6.87e-145 401
Msa0550010 MtrunA17_Chr4g0004661 84.058 207 23 2 1 197 57 263 3.83e-127 358
Msa0550010 MtrunA17_Chr2g0331691 81.463 205 28 2 3 197 5 209 2.44e-122 344
Msa0550010 MtrunA17_Chr6g0466301 69.082 207 53 3 1 197 1 206 1.04e-100 289
Msa0550010 MtrunA17_Chr6g0465491 69.082 207 53 3 1 197 1 206 1.04e-100 289
Msa0550010 MtrunA17_Chr1g0201121 67.464 209 54 3 1 197 1 207 2.00e-97 281
Msa0550010 MtrunA17_Chr8g0383261 61.576 203 68 2 4 197 8 209 1.64e-89 261
Msa0550010 MtrunA17_Chr6g0466161 55.307 179 79 1 19 197 10 187 1.12e-66 203
Msa0550010 MtrunA17_Chr6g0465471 55.307 179 79 1 19 197 10 187 2.39e-66 202
Msa0550010 MtrunA17_Chr6g0466431 67.327 101 33 0 1 101 1 101 7.82e-48 152
Msa0550010 MtrunA17_Chr6g0465611 67.327 101 33 0 1 101 1 101 7.82e-48 152
Msa0550010 MtrunA17_Chr4g0032201 37.019 208 104 6 8 195 12 212 4.78e-37 128
Msa0550010 MtrunA17_Chr1g0182321 37.931 203 103 8 2 190 5 198 1.30e-35 124
Msa0550010 MtrunA17_Chr2g0276941 36.323 223 102 8 1 190 1 216 1.54e-35 124
Msa0550010 MtrunA17_Chr1g0182301 37.438 203 104 8 2 190 5 198 4.57e-35 123
Msa0550010 MtrunA17_Chr2g0276931 38.690 168 87 4 8 166 9 169 1.94e-34 120
Msa0550010 MtrunA17_Chr7g0263071 38.342 193 100 7 8 190 15 198 2.72e-34 120
Msa0550010 MtrunA17_Chr1g0212521 38.144 194 95 7 8 192 15 192 4.49e-34 120
Msa0550010 MtrunA17_Chr4g0030911 37.563 197 104 7 8 194 15 202 5.66e-34 120
Msa0550010 MtrunA17_Chr5g0400131 36.364 209 100 7 10 197 11 207 6.31e-34 119
Msa0550010 MtrunA17_Chr2g0283131 35.714 210 105 8 8 195 13 214 1.46e-33 119
Msa0550010 MtrunA17_Chr2g0327911 39.286 168 88 5 8 166 15 177 2.48e-33 118
Msa0550010 MtrunA17_Chr4g0055081 35.577 208 102 7 10 197 11 206 1.26e-32 116
Msa0550010 MtrunA17_Chr7g0250531 35.500 200 109 6 8 195 8 199 2.21e-32 115
Msa0550010 MtrunA17_Chr3g0112681 38.095 168 88 4 8 166 12 172 2.30e-32 116
Msa0550010 MtrunA17_Chr4g0055651 38.095 168 88 4 8 166 8 168 2.57e-32 115
Msa0550010 MtrunA17_Chr8g0335471 35.000 200 111 5 8 195 8 200 3.35e-32 115
Msa0550010 MtrunA17_Chr4g0046261 34.286 210 108 8 8 195 13 214 3.61e-32 115
Msa0550010 MtrunA17_Chr8g0382221 36.585 205 105 7 10 197 11 207 2.07e-31 113
Msa0550010 MtrunA17_Chr3g0123971 35.784 204 107 5 10 197 11 206 5.52e-31 112
Msa0550010 MtrunA17_Chr4g0040781 33.333 210 110 8 8 195 13 214 8.08e-31 112
Msa0550010 MtrunA17_Chr1g0174281 35.829 187 104 4 8 185 15 194 9.72e-30 109
Msa0550010 MtrunA17_Chr6g0458081 36.628 172 93 4 8 170 6 170 1.43e-29 108
Msa0550010 MtrunA17_Chr8g0390561 36.471 170 92 4 10 170 11 173 3.21e-29 107
Msa0550010 MtrunA17_Chr3g0123821 34.184 196 111 5 8 194 16 202 3.97e-29 107
Msa0550010 MtrunA17_Chr8g0351861 38.272 162 84 5 8 160 16 170 1.02e-28 107
Msa0550010 MtrunA17_Chr2g0315551 32.536 209 113 8 8 195 13 214 1.15e-28 106
Msa0550010 MtrunA17_Chr3g0109721 36.364 165 89 4 10 165 12 169 1.98e-28 105
Msa0550010 MtrunA17_Chr7g0214241 33.929 168 95 4 8 166 15 175 3.48e-28 105
Msa0550010 MtrunA17_Chr2g0325091 33.014 209 111 8 8 195 11 211 4.54e-28 105
Msa0550010 MtrunA17_Chr2g0290891 34.171 199 112 5 8 194 6 197 6.40e-28 104
Msa0550010 MtrunA17_Chr5g0433561 35.758 165 90 4 10 165 12 169 8.11e-28 103
Msa0550010 MtrunA17_Chr8g0381841 34.545 165 92 4 8 163 17 174 1.25e-27 103
Msa0550010 MtrunA17_Chr7g0231131 37.576 165 87 4 8 163 15 172 1.38e-27 103
Msa0550010 MtrunA17_Chr1g0189361 33.929 168 95 4 8 166 14 174 4.97e-27 102
Msa0550010 MtrunA17_Chr2g0319951 34.545 165 92 3 8 163 13 170 2.16e-26 100
Msa0550010 MtrunA17_Chr7g0234201 32.738 168 97 4 8 166 13 173 3.36e-26 100
Msa0550010 MtrunA17_Chr8g0346421 33.032 221 117 9 1 197 19 232 3.76e-26 100
Msa0550010 MtrunA17_Chr6g0482721 35.185 162 89 4 8 160 12 166 4.48e-26 99.8
Msa0550010 MtrunA17_Chr8g0349711 32.571 175 102 4 5 170 3 170 1.85e-25 98.2
Msa0550010 MtrunA17_Chr8g0349681 35.673 171 94 4 9 170 176 339 2.06e-25 102
Msa0550010 MtrunA17_Chr8g0349681 33.981 206 113 7 8 197 384 582 8.04e-24 98.2
Msa0550010 MtrunA17_Chr8g0349681 33.136 169 97 4 5 164 10 171 5.51e-22 92.8
Msa0550010 MtrunA17_Chr7g0275991 36.420 162 87 4 8 160 20 174 4.20e-25 97.4
Msa0550010 MtrunA17_Chr6g0465601 57.143 70 30 0 99 168 3 72 4.52e-25 93.2
Msa0550010 MtrunA17_Chr1g0199331 34.132 167 93 5 9 165 32 191 8.74e-25 95.9
Msa0550010 MtrunA17_Chr8g0392931 35.185 162 89 4 8 160 14 168 9.76e-25 96.3
Msa0550010 MtrunA17_Chr6g0466421 59.091 66 27 0 103 168 17 82 4.38e-24 90.9
Msa0550010 MtrunA17_Chr8g0384311 33.140 172 100 5 8 170 13 178 6.06e-24 94.0
Msa0550010 MtrunA17_Chr1g0159481 33.721 172 99 5 8 170 17 182 5.98e-23 91.7
Msa0550010 MtrunA17_Chr7g0265001 34.545 165 92 6 10 164 18 176 1.05e-21 88.2
Msa0550010 MtrunA17_Chr1g0197331 32.990 194 110 6 9 191 16 200 2.07e-21 87.4
Msa0550010 MtrunA17_Chr1g0180291 30.208 192 111 6 9 191 15 192 1.20e-20 85.5
Msa0550010 MtrunA17_Chr3g0130271 31.285 179 107 6 2 170 6 178 1.36e-20 85.1
Msa0550010 MtrunA17_Chr2g0326141 64.912 57 20 0 120 176 299 355 1.28e-17 79.3
Msa0550010 MtrunA17_Chr3g0138121 28.313 166 100 4 9 165 14 169 5.85e-17 75.9
Msa0550010 MtrunA17_Chr3g0138101 29.480 173 89 7 9 165 14 169 5.85e-17 75.9
Msa0550010 MtrunA17_Chr3g0138111 29.480 173 89 7 9 165 14 169 6.49e-17 75.9
Msa0550010 MtrunA17_Chr6g0486041 27.670 206 117 6 8 195 6 197 7.85e-15 70.1
Msa0550010 MtrunA17_Chr2g0325101 26.816 179 107 5 8 168 6 178 2.62e-11 60.1
Msa0550010 MtrunA17_Chr3g0117931 26.425 193 118 5 1 175 1 187 6.28e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550010 AT3G18820.1 88.835 206 14 1 1 197 1 206 1.41e-135 378
Msa0550010 AT1G49300.2 84.951 206 22 1 1 197 1 206 1.99e-129 362
Msa0550010 AT1G49300.1 84.951 206 22 1 1 197 1 206 1.99e-129 362
Msa0550010 AT1G52280.1 79.612 206 33 1 1 197 1 206 1.54e-120 340
Msa0550010 AT3G16100.1 78.155 206 36 1 1 197 1 206 3.82e-120 339
Msa0550010 AT4G09720.1 66.505 206 60 1 1 197 1 206 3.78e-101 291
Msa0550010 AT4G09720.4 64.929 211 60 2 1 197 1 211 8.50e-98 282
Msa0550010 AT4G09720.3 63.134 217 60 2 1 197 1 217 1.63e-97 282
Msa0550010 AT1G22740.1 66.667 207 55 3 1 197 1 203 4.02e-96 278
Msa0550010 AT2G21880.1 60.476 210 65 3 4 197 5 212 1.10e-87 257
Msa0550010 AT4G09720.6 67.836 171 55 0 27 197 2 172 7.81e-87 253
Msa0550010 AT4G09720.5 67.836 171 55 0 27 197 2 172 7.81e-87 253
Msa0550010 AT4G09720.2 67.836 171 55 0 27 197 2 172 7.81e-87 253
Msa0550010 AT2G21880.4 61.828 186 62 2 19 197 4 187 6.77e-81 239
Msa0550010 AT2G21880.3 61.828 186 62 2 19 197 4 187 6.77e-81 239
Msa0550010 AT2G21880.2 56.667 210 65 4 4 197 5 204 4.93e-78 232
Msa0550010 AT5G39620.1 55.233 172 68 1 6 168 3 174 1.01e-64 198
Msa0550010 AT5G59840.1 37.563 197 107 6 8 194 15 205 7.17e-36 125
Msa0550010 AT3G53610.2 38.021 192 103 6 8 189 15 200 4.97e-35 123
Msa0550010 AT3G53610.3 38.021 192 103 6 8 189 15 200 4.97e-35 123
Msa0550010 AT3G53610.1 38.021 192 103 6 8 189 15 200 4.97e-35 123
Msa0550010 AT3G46060.2 36.548 197 109 6 8 194 15 205 1.64e-34 122
Msa0550010 AT3G46060.3 36.548 197 109 6 8 194 15 205 1.64e-34 122
Msa0550010 AT3G46060.1 36.548 197 109 6 8 194 15 205 1.64e-34 122
Msa0550010 AT1G09630.1 38.596 171 89 4 8 169 12 175 3.81e-34 120
Msa0550010 AT1G28550.1 35.533 197 101 6 8 185 13 202 7.07e-34 120
Msa0550010 AT2G33870.1 34.286 210 109 7 8 195 13 215 7.70e-34 120
Msa0550010 AT3G11730.1 38.764 178 93 4 1 169 1 171 4.33e-33 117
Msa0550010 AT2G44610.1 36.190 210 100 7 10 197 11 208 7.28e-33 117
Msa0550010 AT4G18430.1 33.333 210 110 8 8 195 13 214 1.26e-32 117
Msa0550010 AT4G17530.1 35.176 199 111 5 8 195 8 199 1.73e-32 116
Msa0550010 AT5G47200.1 35.176 199 111 5 8 195 8 199 3.40e-32 115
Msa0550010 AT5G60860.1 34.762 210 107 8 8 195 13 214 5.10e-32 115
Msa0550010 AT1G07410.1 34.135 208 109 7 8 195 12 211 5.38e-32 115
Msa0550010 AT5G03520.1 41.341 179 84 8 2 166 5 176 7.63e-32 115
Msa0550010 AT3G15060.1 34.286 210 108 8 8 195 13 214 7.66e-32 115
Msa0550010 AT3G46830.1 38.182 165 86 4 8 163 12 169 9.29e-32 114
Msa0550010 AT3G46830.2 38.182 165 86 4 8 163 12 169 9.29e-32 114
Msa0550010 AT5G45750.1 34.450 209 108 9 8 195 13 213 9.77e-32 114
Msa0550010 AT5G59150.1 36.970 165 88 4 8 163 12 169 1.23e-31 114
Msa0550010 AT3G12160.1 36.842 190 104 4 8 188 15 197 2.27e-31 114
Msa0550010 AT3G09900.1 41.341 179 84 8 2 166 5 176 3.92e-31 113
Msa0550010 AT5G64990.1 36.842 209 100 7 10 197 9 206 8.04e-31 112
Msa0550010 AT1G02130.1 34.000 200 113 6 8 195 8 200 1.96e-30 111
Msa0550010 AT4G35860.1 36.842 171 92 4 8 169 6 169 7.44e-30 109
Msa0550010 AT4G18800.1 34.783 184 94 5 8 173 13 188 1.90e-29 108
Msa0550010 AT1G05810.1 31.776 214 119 6 4 197 8 214 4.34e-29 108
Msa0550010 AT5G47960.1 33.019 212 111 6 8 195 15 219 5.55e-29 107
Msa0550010 AT5G10260.1 34.615 208 105 7 10 197 11 207 1.20e-28 106
Msa0550010 AT1G05810.2 31.776 214 119 6 4 197 54 260 1.31e-28 107
Msa0550010 AT1G16920.1 32.212 208 114 8 8 195 13 213 2.03e-28 106
Msa0550010 AT4G39990.1 32.990 194 109 5 8 192 17 198 2.30e-28 106
Msa0550010 AT5G03520.2 44.697 132 67 4 35 166 41 166 2.84e-28 105
Msa0550010 AT5G65270.1 34.054 185 98 5 8 175 17 194 3.01e-28 105
Msa0550010 AT5G64990.2 35.648 216 100 8 10 197 9 213 4.16e-28 105
Msa0550010 AT2G31680.1 33.333 168 96 4 8 166 12 172 4.50e-28 105
Msa0550010 AT4G17170.1 34.171 199 112 5 8 194 6 197 5.24e-28 105
Msa0550010 AT4G17160.1 36.471 170 92 4 9 169 7 169 5.73e-28 104
Msa0550010 AT1G06400.1 35.152 165 91 4 8 163 13 170 7.07e-28 104
Msa0550010 AT1G73640.1 37.037 162 86 4 8 160 13 167 2.08e-27 103
Msa0550010 AT4G19640.1 33.880 183 102 5 10 180 12 187 4.74e-27 102
Msa0550010 AT5G45130.1 35.152 165 91 4 10 165 12 169 7.58e-27 101
Msa0550010 AT1G18200.1 36.970 165 88 5 8 163 13 170 8.53e-27 102
Msa0550010 AT2G43130.1 33.333 168 96 4 8 166 12 172 1.58e-26 101
Msa0550010 AT4G39890.1 35.152 165 92 3 9 164 10 168 2.11e-26 100
Msa0550010 AT1G01200.1 34.320 169 96 3 1 160 21 183 2.72e-26 101
Msa0550010 AT2G22290.1 32.843 204 112 5 10 197 11 205 6.85e-26 99.4
Msa0550010 AT5G47520.1 33.333 168 96 4 8 166 14 174 9.23e-26 99.4
Msa0550010 AT5G45130.2 34.969 163 90 4 12 165 22 177 1.18e-25 99.0
Msa0550010 AT3G07410.1 32.143 168 98 4 8 166 12 172 2.86e-25 98.2
Msa0550010 AT3G54840.1 32.955 176 100 6 1 165 25 193 3.29e-24 95.1
Msa0550010 AT5G59150.2 39.024 123 68 3 41 163 3 118 7.48e-24 93.2
Msa0550010 AT3G54840.3 33.333 165 93 5 11 165 2 159 1.42e-23 92.4
Msa0550010 AT3G54840.2 32.558 172 98 6 1 161 25 189 4.72e-23 91.7
Msa0550010 AT4G35860.2 40.476 126 67 4 41 165 2 120 5.04e-23 90.9
Msa0550010 AT1G43890.3 34.302 172 98 6 8 170 13 178 6.33e-23 91.7
Msa0550010 AT1G43890.1 34.302 172 98 6 8 170 13 178 6.33e-23 91.7
Msa0550010 AT1G43890.2 34.302 172 98 6 8 170 13 178 6.33e-23 91.7
Msa0550010 AT4G19640.2 34.307 137 76 3 10 137 12 143 1.59e-21 86.7
Msa0550010 AT5G03530.2 32.461 191 106 7 10 191 15 191 3.11e-21 87.4
Msa0550010 AT5G03530.1 32.461 191 106 7 10 191 15 191 3.11e-21 87.4
Msa0550010 AT4G19640.3 35.833 120 64 2 10 120 12 127 2.59e-20 84.3
Msa0550010 AT3G09910.3 30.052 193 110 7 9 191 14 191 1.53e-18 80.1
Msa0550010 AT3G09910.1 30.052 193 110 7 9 191 14 191 1.53e-18 80.1
Msa0550010 AT3G09910.2 30.052 193 110 7 9 191 14 191 1.53e-18 80.1
Msa0550010 AT3G09910.5 31.515 165 98 5 9 164 14 172 5.51e-18 78.6
Msa0550010 AT3G09910.4 31.515 165 98 5 9 164 14 172 5.51e-18 78.6
Msa0550010 AT5G55190.1 29.480 173 89 7 9 165 14 169 7.51e-17 75.9
Msa0550010 AT5G20010.1 29.480 173 89 7 9 165 14 169 9.14e-17 75.9
Msa0550010 AT5G20020.1 29.480 173 89 7 9 165 14 169 9.53e-17 75.9
Msa0550010 AT5G55080.1 26.455 189 116 4 9 184 14 192 1.24e-15 72.8
Msa0550010 AT4G28950.1 29.189 185 109 6 8 176 6 184 2.46e-15 71.6
Msa0550010 AT5G62880.1 27.807 187 111 5 1 169 1 181 5.89e-12 62.8
Msa0550010 AT5G45970.1 26.667 180 108 5 8 169 6 179 8.40e-12 62.0
Msa0550010 AT3G48040.1 27.807 187 111 5 1 169 1 181 5.70e-11 59.7

Find 66 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCAGATGTCTCAAAATA+TGG 0.180049 4_1:+45401459 None:intergenic
ATCTTCAAATTGCACTTCTT+TGG 0.266812 4_1:+45403006 None:intergenic
TTCGACATTAATACCTTCTT+TGG 0.296445 4_1:+45401440 None:intergenic
TCTCTCTATCGTAAATCTTA+AGG 0.319379 4_1:+45404323 None:intergenic
ATTCCTCCCTCCAGTTGTTC+AGG 0.326914 4_1:+45401867 None:intergenic
GGGCATCCTTTGCTATGGTT+TGG 0.331267 4_1:+45401409 None:intergenic
AAGAAGTGCAATTTGAAGAT+AGG 0.335741 4_1:-45403003 Msa0550010:CDS
CTCTTGAAAGTCATCATTCT+CGG 0.403803 4_1:-45404141 Msa0550010:CDS
AGAAAGCAACTCCTAGGCTT+TGG 0.417205 4_1:+45401951 None:intergenic
GCGATTTGTTGGTGCTTGTT+TGG 0.419171 4_1:-45400753 Msa0550010:three_prime_UTR
CATTTGACAACCTGAACAAC+TGG 0.419689 4_1:-45401877 Msa0550010:CDS
AGCAATCAGCCAAGGTCATC+AGG 0.423555 4_1:-45400919 Msa0550010:CDS
CTTTCAAGAGCGTTCTTCTA+CGG 0.436158 4_1:+45404154 None:intergenic
GCAAAGGATGCCCTGAAAAG+TGG 0.450910 4_1:-45401399 Msa0550010:CDS
TTGTTTCCTATAACAACAAA+AGG 0.451159 4_1:+45401696 None:intergenic
ACAACAAAAGGAAAATTCTC+TGG 0.451708 4_1:+45401708 None:intergenic
GGAGGAAGAGTTAACCGCTT+TGG 0.458775 4_1:+45404195 None:intergenic
TTTCCAACATCAATTGTGTC+TGG 0.462911 4_1:+45400943 None:intergenic
TGCACAGGTTTCAGAAAAGA+AGG 0.467310 4_1:-45401514 Msa0550010:intron
TTTCAGGGCATCCTTTGCTA+TGG 0.470505 4_1:+45401404 None:intergenic
CTAGGCTTTGGAATCTCTCC+TGG 0.472910 4_1:+45401963 None:intergenic
TAGGAGTTGCTTTCTATCGT+GGG 0.475937 4_1:-45401943 Msa0550010:CDS
TGGCAGATGTCTCAAAATAT+GGG 0.483704 4_1:+45401460 None:intergenic
TTTGAGACATCTGCCAAAGA+AGG 0.487428 4_1:-45401453 Msa0550010:CDS
TTTCAAGAGCGTTCTTCTAC+GGG 0.490904 4_1:+45404155 None:intergenic
GGAAAATTCTCTGGATCGGA+AGG 0.495526 4_1:+45401717 None:intergenic
CGGGCATGGTGTGCAGCAAA+AGG 0.496942 4_1:-45401489 Msa0550010:CDS
CAACATCAATTGTGTCTGGC+AGG 0.497094 4_1:+45400947 None:intergenic
CAATGTTGGAATAGCATACA+AGG 0.501772 4_1:+45400700 None:intergenic
TCTAGCCGTTGCTGTCTATG+AGG 0.502452 4_1:-45400821 Msa0550010:three_prime_UTR
TGCCCTGAAAAGTGGGGAAG+AGG 0.506394 4_1:-45401391 Msa0550010:CDS
GGAAACAAGATCGACATTGA+TGG 0.507185 4_1:-45401681 Msa0550010:CDS
GATTTGGGATACAGCTGGCC+AGG 0.507917 4_1:-45401981 Msa0550010:CDS
GGTTAAGAAGTCAGCTCCAA+TGG 0.508254 4_1:+45403027 None:intergenic
CTAGGAGTTGCTTTCTATCG+TGG 0.516699 4_1:-45401944 Msa0550010:CDS
AATCAGTACAAGGCAACCAT+TGG 0.525698 4_1:-45403043 Msa0550010:CDS
GCACCATTCACAAACCTGTA+AGG 0.531833 4_1:+45402973 None:intergenic
TTGCAGATTTGGGATACAGC+TGG 0.533863 4_1:-45401986 Msa0550010:intron
CAAAGGATGCCCTGAAAAGT+GGG 0.534379 4_1:-45401398 Msa0550010:CDS
AGGTTTCAGAAAAGAAGGCT+CGG 0.540140 4_1:-45401509 Msa0550010:CDS
TCATCATTCTCGGTGACAGC+GGG 0.542655 4_1:-45404131 Msa0550010:intron
AAAAGGAAAATTCTCTGGAT+CGG 0.543661 4_1:+45401713 None:intergenic
CTGCCAGACACAATTGATGT+TGG 0.557538 4_1:-45400946 Msa0550010:CDS
GGTTTCAGAAAAGAAGGCTC+GGG 0.559631 4_1:-45401508 Msa0550010:CDS
CACTCACATCCTGATGACCT+TGG 0.564551 4_1:+45400910 None:intergenic
CACGATAGAAAGCAACTCCT+AGG 0.569261 4_1:+45401945 None:intergenic
CAGGAGAGATTCCAAAGCCT+AGG 0.576665 4_1:-45401962 Msa0550010:CDS
AACAAGATCGACATTGATGG+TGG 0.578098 4_1:-45401678 Msa0550010:CDS
AAGAGCGTTCTTCTACGGGA+AGG 0.590281 4_1:+45404159 None:intergenic
AGCATTCCAAACCATAGCAA+AGG 0.595720 4_1:-45401415 Msa0550010:CDS
GTCATCATTCTCGGTGACAG+CGG 0.607687 4_1:-45404132 Msa0550010:CDS
CAGAAAAGAAGGCTCGGGCA+TGG 0.609079 4_1:-45401503 Msa0550010:CDS
AGGAGTTGCTTTCTATCGTG+GGG 0.614079 4_1:-45401942 Msa0550010:CDS
GAAGTTTAGTAATCAGTACA+AGG 0.614358 4_1:-45403053 Msa0550010:CDS
CGGGAAGGCATCGTTCAGAT+CGG 0.615340 4_1:+45404174 None:intergenic
TTGACAACCTGAACAACTGG+AGG 0.622151 4_1:-45401874 Msa0550010:CDS
GAGAGAAACAGAGTTGAAGA+CGG 0.630192 4_1:-45404265 Msa0550010:five_prime_UTR
TTGGAAACAGCAATCAGCCA+AGG 0.645424 4_1:-45400927 Msa0550010:CDS
ACAAGATCGACATTGATGGT+GGG 0.651715 4_1:-45401677 Msa0550010:CDS
GAAGGCATCGTTCAGATCGG+AGG 0.665371 4_1:+45404177 None:intergenic
TGATGGTGGGAACAGTAGAG+TGG 0.665695 4_1:-45401664 Msa0550010:intron
TGAAACCTCATAGACAGCAA+CGG 0.678649 4_1:+45400816 None:intergenic
CAACCTGAACAACTGGAGGG+AGG 0.681303 4_1:-45401870 Msa0550010:CDS
TGACAACCTGAACAACTGGA+GGG 0.682742 4_1:-45401873 Msa0550010:CDS
TCACAAAACACATACCAAAG+CGG 0.704022 4_1:-45404209 Msa0550010:five_prime_UTR
AAAGGATGCCCTGAAAAGTG+GGG 0.713593 4_1:-45401397 Msa0550010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGATAATTATGATTAT+CGG + chr4_1:45400856-45400875 None:intergenic 10.0%
!! TTAAAATTATCAATAAAAAC+AGG + chr4_1:45402867-45402886 None:intergenic 10.0%
!!! TTGATAATTTTAAGTTAAAA+TGG - chr4_1:45402874-45402893 Msa0550010:intron 10.0%
!!! ATATTATTTTAAAATCACTT+TGG - chr4_1:45404080-45404099 Msa0550010:intron 10.0%
!! CTATAAGTAACTTAATTTAT+AGG - chr4_1:45401020-45401039 Msa0550010:intron 15.0%
!! ACTTAATTTATAGAATTGTT+TGG - chr4_1:45401353-45401372 Msa0550010:intron 15.0%
!! ATTGAAAACAAATATAGAAT+CGG + chr4_1:45401751-45401770 None:intergenic 15.0%
!!! TTCACATATCTAAAATATAT+AGG + chr4_1:45401852-45401871 None:intergenic 15.0%
!! ATAAACATTCAAAACAAAAA+GGG + chr4_1:45402071-45402090 None:intergenic 15.0%
!! ATATATAGATTGAATCTAAT+GGG - chr4_1:45402596-45402615 Msa0550010:intron 15.0%
!!! GTACAAAATAATTTTTGTAT+GGG + chr4_1:45404309-45404328 None:intergenic 15.0%
!!! TGTACAAAATAATTTTTGTA+TGG + chr4_1:45404310-45404329 None:intergenic 15.0%
!! AAAGAATAAAAATAAGCAGA+AGG + chr4_1:45400904-45400923 None:intergenic 20.0%
!!! TCATTTTTCTTATTCTTGTT+TGG - chr4_1:45400982-45401001 Msa0550010:intron 20.0%
!!! TCATTTTCACAAATTATCAA+CGG + chr4_1:45401110-45401129 None:intergenic 20.0%
!!! GAATTTTTCTTGTAATTGTT+TGG - chr4_1:45401306-45401325 Msa0550010:intron 20.0%
!! AAATCAACTTAACATTAACA+TGG + chr4_1:45401389-45401408 None:intergenic 20.0%
!!! TTTTTTTCTTCTTCTTAACA+TGG - chr4_1:45401444-45401463 Msa0550010:CDS 20.0%
!!! GTTTATGCTTTAAAAATATG+CGG - chr4_1:45401808-45401827 Msa0550010:intron 20.0%
!! GATAAACATTCAAAACAAAA+AGG + chr4_1:45402072-45402091 None:intergenic 20.0%
!! TGTATTGCATTATTTGAAAA+CGG - chr4_1:45402392-45402411 Msa0550010:intron 20.0%
!! GATATATAGATTGAATCTAA+TGG - chr4_1:45402595-45402614 Msa0550010:intron 20.0%
!! TATATAGATTGAATCTAATG+GGG - chr4_1:45402597-45402616 Msa0550010:intron 20.0%
!!! AATTTTCCTTTTGTTGTTAT+AGG - chr4_1:45403226-45403245 Msa0550010:intron 20.0%
!! CATAAAAAATGCATTAAGTT+AGG - chr4_1:45403617-45403636 Msa0550010:intron 20.0%
!!! ATCTTTCTGTTATTTGATAA+TGG - chr4_1:45403877-45403896 Msa0550010:intron 20.0%
!!! TCTTTCTGTTATTTGATAAT+GGG - chr4_1:45403878-45403897 Msa0550010:intron 20.0%
!! AAACATAACATCAATAACAT+TGG + chr4_1:45403918-45403937 None:intergenic 20.0%
!!! ATGTTATTGATGTTATGTTT+TGG - chr4_1:45403918-45403937 Msa0550010:intron 20.0%
!!! TGTTATTGATGTTATGTTTT+GGG - chr4_1:45403919-45403938 Msa0550010:intron 20.0%
! TTGTTAATTAGCGAATATAC+CGG - chr4_1:45401560-45401579 Msa0550010:intron 25.0%
! TTGTACTAAATAGTGTATTG+TGG + chr4_1:45401633-45401652 None:intergenic 25.0%
!! ATTTTCACTGCAATTTTCTA+AGG - chr4_1:45401769-45401788 Msa0550010:intron 25.0%
!!! CTAAGGTTTTAGTATTGTAT+AGG - chr4_1:45401786-45401805 Msa0550010:intron 25.0%
! TCAAAATCAAATTAAGCACA+AGG + chr4_1:45401983-45402002 None:intergenic 25.0%
! ATCTTTCTGATATTACTAGA+TGG - chr4_1:45402089-45402108 Msa0550010:intron 25.0%
! TGATATTACTAGATGGTTTA+TGG - chr4_1:45402096-45402115 Msa0550010:intron 25.0%
!! GATTTTATTGAAGAATTCGT+AGG - chr4_1:45402227-45402246 Msa0550010:intron 25.0%
! CAAATAATGCAATACACTTT+AGG + chr4_1:45402388-45402407 None:intergenic 25.0%
! GTATTGCATTATTTGAAAAC+GGG - chr4_1:45402393-45402412 Msa0550010:intron 25.0%
!!! CTATATTTTGATGATTGTCT+TGG - chr4_1:45402478-45402497 Msa0550010:intron 25.0%
! TACATATATGTGCAAACTAA+CGG + chr4_1:45402539-45402558 None:intergenic 25.0%
! ATTCTAAATCTTGCAGATTT+GGG - chr4_1:45402932-45402951 Msa0550010:intron 25.0%
! TTGTTTCCTATAACAACAAA+AGG + chr4_1:45403235-45403254 None:intergenic 25.0%
! AAACATGTTAGATAGAAAAG+GGG + chr4_1:45403302-45403321 None:intergenic 25.0%
! GAAACATGTTAGATAGAAAA+GGG + chr4_1:45403303-45403322 None:intergenic 25.0%
! AGAAACATGTTAGATAGAAA+AGG + chr4_1:45403304-45403323 None:intergenic 25.0%
! ATAGGATTGATGTTTAATGA+TGG - chr4_1:45403717-45403736 Msa0550010:intron 25.0%
!! TCAATCTTTTCATCATAACA+TGG + chr4_1:45403763-45403782 None:intergenic 25.0%
! TGATGAAAAGATTGATATGT+TGG - chr4_1:45403768-45403787 Msa0550010:intron 25.0%
!! TGGTTTGTCTTATATAATAG+TGG - chr4_1:45403788-45403807 Msa0550010:intron 25.0%
! CAGAAAGATTCATAATCTAT+GGG + chr4_1:45403866-45403885 None:intergenic 25.0%
! ACAGAAAGATTCATAATCTA+TGG + chr4_1:45403867-45403886 None:intergenic 25.0%
! ATTGTGAAAAAAAACAGCAA+AGG - chr4_1:45404247-45404266 Msa0550010:five_prime_UTR 25.0%
TCTCTCTATCGTAAATCTTA+AGG + chr4_1:45400608-45400627 None:intergenic 30.0%
!! TTGATTTGCAAGCTCAAAAT+TGG - chr4_1:45400948-45400967 Msa0550010:CDS 30.0%
ACAAGAATCATATCTAGACA+TGG - chr4_1:45401068-45401087 Msa0550010:intron 30.0%
!! TAGTGTTTTTGATGATTTGC+AGG - chr4_1:45401467-45401486 Msa0550010:CDS 30.0%
!! AGTGTTTTTGATGATTTGCA+GGG - chr4_1:45401468-45401487 Msa0550010:CDS 30.0%
! GTATCCTTCGATTTTTGTAT+AGG - chr4_1:45401516-45401535 Msa0550010:intron 30.0%
ACTTCCTATACAAAAATCGA+AGG + chr4_1:45401523-45401542 None:intergenic 30.0%
TACAAAATATCGTGACATAG+CGG - chr4_1:45401648-45401667 Msa0550010:intron 30.0%
GAAGTTTAGTAATCAGTACA+AGG - chr4_1:45401875-45401894 Msa0550010:CDS 30.0%
ATCTTCAAATTGCACTTCTT+TGG + chr4_1:45401925-45401944 None:intergenic 30.0%
! AAGAAGTGCAATTTGAAGAT+AGG - chr4_1:45401925-45401944 Msa0550010:CDS 30.0%
!!! GATTTTGAGATGCTTGAAAA+TGG - chr4_1:45401995-45402014 Msa0550010:intron 30.0%
! GGTTTGGTAATTTGTAAATC+TGG + chr4_1:45402050-45402069 None:intergenic 30.0%
CATTCAAAACAAAAAGGGTT+TGG + chr4_1:45402066-45402085 None:intergenic 30.0%
! AAACCTTTTCCAACTAAATG+GGG + chr4_1:45402145-45402164 None:intergenic 30.0%
! CAAACCTTTTCCAACTAAAT+GGG + chr4_1:45402146-45402165 None:intergenic 30.0%
ACTTAATCCAATGAACTACT+AGG + chr4_1:45402325-45402344 None:intergenic 30.0%
AACAATTTCTCAAAAACGAC+AGG + chr4_1:45402456-45402475 None:intergenic 30.0%
GTTTGCACATATATGTAATG+TGG - chr4_1:45402542-45402561 Msa0550010:intron 30.0%
TAACAATCCTAAACCGAAAA+AGG + chr4_1:45402701-45402720 None:intergenic 30.0%
!! TTTTTCGGTTTAGGATTGTT+AGG - chr4_1:45402700-45402719 Msa0550010:intron 30.0%
!!! TGTTAGGCTGCTTAATTTTT+TGG - chr4_1:45402716-45402735 Msa0550010:intron 30.0%
!!! ATTTTTTGGACAGTACACTT+TGG - chr4_1:45402730-45402749 Msa0550010:intron 30.0%
TTTCCACAAGAAACAAAACA+TGG + chr4_1:45402807-45402826 None:intergenic 30.0%
CATTCTAAATCTTGCAGATT+TGG - chr4_1:45402931-45402950 Msa0550010:intron 30.0%
AAAAGGAAAATTCTCTGGAT+CGG + chr4_1:45403218-45403237 None:intergenic 30.0%
ACAACAAAAGGAAAATTCTC+TGG + chr4_1:45403223-45403242 None:intergenic 30.0%
! AGGTTTTTCATGAATGTATC+TGG + chr4_1:45403353-45403372 None:intergenic 30.0%
CTGTTTAGCAGTACATATTT+AGG + chr4_1:45403373-45403392 None:intergenic 30.0%
TTCGACATTAATACCTTCTT+TGG + chr4_1:45403491-45403510 None:intergenic 30.0%
! ATCTGATTGTGAGCATATTT+TGG - chr4_1:45403643-45403662 Msa0550010:intron 30.0%
TAGTGAACTAAAACACTAGT+AGG + chr4_1:45403670-45403689 None:intergenic 30.0%
CTCTTGGAAAAAATGCATAT+AGG - chr4_1:45403699-45403718 Msa0550010:intron 30.0%
TTTCATCATAACATGGCAAA+TGG + chr4_1:45403756-45403775 None:intergenic 30.0%
!!! GCTGTTTTTTTTCACAATGT+TGG + chr4_1:45404245-45404264 None:intergenic 30.0%
TCACAAAACACATACCAAAG+CGG - chr4_1:45400719-45400738 Msa0550010:three_prime_UTR 35.0%
CTCTTGAAAGTCATCATTCT+CGG - chr4_1:45400787-45400806 Msa0550010:three_prime_UTR 35.0%
TCTCGAACTCTTCAATTCTA+GGG - chr4_1:45400826-45400845 Msa0550010:three_prime_UTR 35.0%
!! TTTTTGATGATTTGCAGGGT+GGG - chr4_1:45401472-45401491 Msa0550010:CDS 35.0%
AATCTGGCCTATCATTTACA+AGG + chr4_1:45402034-45402053 None:intergenic 35.0%
! CCAAACCTTTTCCAACTAAA+TGG + chr4_1:45402147-45402166 None:intergenic 35.0%
CCATTTAGTTGGAAAAGGTT+TGG - chr4_1:45402144-45402163 Msa0550010:intron 35.0%
ATGTTCAACCTTCAGTTAAG+AGG + chr4_1:45402257-45402276 None:intergenic 35.0%
TGAAGGTTGAACATGTTTGT+TGG - chr4_1:45402263-45402282 Msa0550010:intron 35.0%
ATATGTGCAAACTAACGGTT+TGG + chr4_1:45402534-45402553 None:intergenic 35.0%
!!! CATCCATGTTTTGTTTCTTG+TGG - chr4_1:45402801-45402820 Msa0550010:intron 35.0%
AACTTTGTGATCACTTCATC+AGG - chr4_1:45403183-45403202 Msa0550010:intron 35.0%
TGGCAGATGTCTCAAAATAT+GGG + chr4_1:45403471-45403490 None:intergenic 35.0%
TTGGCAGATGTCTCAAAATA+TGG + chr4_1:45403472-45403491 None:intergenic 35.0%
TTTCCAACATCAATTGTGTC+TGG + chr4_1:45403988-45404007 None:intergenic 35.0%
!!! ACTGTTTTAGTGCGATTTGT+TGG - chr4_1:45404164-45404183 Msa0550010:CDS 35.0%
CAATGTTGGAATAGCATACA+AGG + chr4_1:45404231-45404250 None:intergenic 35.0%
GAGAGAAACAGAGTTGAAGA+CGG - chr4_1:45400663-45400682 Msa0550010:three_prime_UTR 40.0%
!! TTTCAAGAGCGTTCTTCTAC+GGG + chr4_1:45400776-45400795 None:intergenic 40.0%
!! CTTTCAAGAGCGTTCTTCTA+CGG + chr4_1:45400777-45400796 None:intergenic 40.0%
CTCTCGAACTCTTCAATTCT+AGG - chr4_1:45400825-45400844 Msa0550010:three_prime_UTR 40.0%
TCTCGAGTAGCTTAATGCAT+AGG - chr4_1:45401282-45401301 Msa0550010:intron 40.0%
!! GTTTTTGATGATTTGCAGGG+TGG - chr4_1:45401471-45401490 Msa0550010:CDS 40.0%
!! TTTTGATGATTTGCAGGGTG+GGG - chr4_1:45401473-45401492 Msa0550010:CDS 40.0%
!! CGAAGGATACTGATTCATCA+AGG + chr4_1:45401506-45401525 None:intergenic 40.0%
! GCCATAACACTTTTGCATAG+CGG - chr4_1:45401681-45401700 Msa0550010:CDS 40.0%
!! TCCGCTATGCAAAAGTGTTA+TGG + chr4_1:45401685-45401704 None:intergenic 40.0%
AATCAGTACAAGGCAACCAT+TGG - chr4_1:45401885-45401904 Msa0550010:CDS 40.0%
! AGATAGGCTTTTCACCTTAC+AGG - chr4_1:45401941-45401960 Msa0550010:CDS 40.0%
TCACCTTACAGGTTTGTGAA+TGG - chr4_1:45401952-45401971 Msa0550010:CDS 40.0%
! GACCAAGCCTTGTAAATGAT+AGG - chr4_1:45402024-45402043 Msa0550010:intron 40.0%
ACTAAATGGGGTTGGATACA+TGG + chr4_1:45402133-45402152 None:intergenic 40.0%
TGTATCCAACCCCATTTAGT+TGG - chr4_1:45402133-45402152 Msa0550010:intron 40.0%
! CTTTTCCAACTAAATGGGGT+TGG + chr4_1:45402141-45402160 None:intergenic 40.0%
CAACCCCATTTAGTTGGAAA+AGG - chr4_1:45402139-45402158 Msa0550010:intron 40.0%
TAGGTGAACCTCTTAACTGA+AGG - chr4_1:45402246-45402265 Msa0550010:intron 40.0%
GCGTGTTTAATTGACACAAC+AGG + chr4_1:45402303-45402322 None:intergenic 40.0%
AAACACGCCTAGTAGTTCAT+TGG - chr4_1:45402315-45402334 Msa0550010:intron 40.0%
!! CAATACACTTTAGGATGCAG+GGG + chr4_1:45402379-45402398 None:intergenic 40.0%
!! GCAATACACTTTAGGATGCA+GGG + chr4_1:45402380-45402399 None:intergenic 40.0%
!! TGCAATACACTTTAGGATGC+AGG + chr4_1:45402381-45402400 None:intergenic 40.0%
! TTTGAAAACGGGCTTGTGTA+TGG - chr4_1:45402404-45402423 Msa0550010:intron 40.0%
! TTGAAAACGGGCTTGTGTAT+GGG - chr4_1:45402405-45402424 Msa0550010:intron 40.0%
CAGAGTGCAATGGAAAAACT+TGG + chr4_1:45402673-45402692 None:intergenic 40.0%
!!! TGAAGAGCCTTTTTCGGTTT+AGG - chr4_1:45402691-45402710 Msa0550010:intron 40.0%
! TTTTGGACAGTACACTTTGG+TGG - chr4_1:45402733-45402752 Msa0550010:intron 40.0%
TTTGGACAGTACACTTTGGT+GGG - chr4_1:45402734-45402753 Msa0550010:intron 40.0%
! CTAATACTGAAAGAGCGTGA+CGG + chr4_1:45402780-45402799 None:intergenic 40.0%
! TAGGAGTTGCTTTCTATCGT+GGG - chr4_1:45402985-45403004 Msa0550010:intron 40.0%
CATTTGACAACCTGAACAAC+TGG - chr4_1:45403051-45403070 Msa0550010:CDS 40.0%
GGAAACAAGATCGACATTGA+TGG - chr4_1:45403247-45403266 Msa0550010:intron 40.0%
AACAAGATCGACATTGATGG+TGG - chr4_1:45403250-45403269 Msa0550010:intron 40.0%
! ACAAGATCGACATTGATGGT+GGG - chr4_1:45403251-45403270 Msa0550010:intron 40.0%
CATGTTAGATAGAAAAGGGG+AGG + chr4_1:45403299-45403318 None:intergenic 40.0%
ACACATAAGTTCTTGTGCAC+AGG - chr4_1:45403399-45403418 Msa0550010:intron 40.0%
TGCACAGGTTTCAGAAAAGA+AGG - chr4_1:45403414-45403433 Msa0550010:intron 40.0%
AGGTTTCAGAAAAGAAGGCT+CGG - chr4_1:45403419-45403438 Msa0550010:intron 40.0%
! TTTGAGACATCTGCCAAAGA+AGG - chr4_1:45403475-45403494 Msa0550010:intron 40.0%
AGCATTCCAAACCATAGCAA+AGG - chr4_1:45403513-45403532 Msa0550010:intron 40.0%
TTCACTATATCCACGTCTCT+TGG - chr4_1:45403683-45403702 Msa0550010:intron 40.0%
!!! TGCATTTTTTCCAAGAGACG+TGG + chr4_1:45403696-45403715 None:intergenic 40.0%
! TTTGGGATTTGTTCTCCATG+TGG - chr4_1:45403936-45403955 Msa0550010:intron 40.0%
AACAAGCACGAATTTCCACA+TGG + chr4_1:45403954-45403973 None:intergenic 40.0%
TGAAACCTCATAGACAGCAA+CGG + chr4_1:45404115-45404134 None:intergenic 40.0%
TATCCGACAGTGACACATGT+TGG - chr4_1:45401215-45401234 Msa0550010:intron 45.0%
ATCCGACAGTGACACATGTT+GGG - chr4_1:45401216-45401235 Msa0550010:intron 45.0%
ACGCAATAGTGCTATAGCTC+CGG + chr4_1:45401582-45401601 None:intergenic 45.0%
GCTATAGCACTATTGCGTAG+CGG - chr4_1:45401584-45401603 Msa0550010:intron 45.0%
CTATAGCACTATTGCGTAGC+GGG - chr4_1:45401585-45401604 Msa0550010:intron 45.0%
ATATCGTGACATAGCGGCTA+TGG - chr4_1:45401654-45401673 Msa0550010:intron 45.0%
GGTTAAGAAGTCAGCTCCAA+TGG + chr4_1:45401904-45401923 None:intergenic 45.0%
GCACCATTCACAAACCTGTA+AGG + chr4_1:45401958-45401977 None:intergenic 45.0%
GGCCTATCATTTACAAGGCT+TGG + chr4_1:45402029-45402048 None:intergenic 45.0%
AAAGGCTCTTCAGAGTGCAA+TGG + chr4_1:45402683-45402702 None:intergenic 45.0%
!! GCACTCTGAAGAGCCTTTTT+CGG - chr4_1:45402685-45402704 Msa0550010:intron 45.0%
TTGGACAGTACACTTTGGTG+GGG - chr4_1:45402735-45402754 Msa0550010:intron 45.0%
! TTGCAGATTTGGGATACAGC+TGG - chr4_1:45402942-45402961 Msa0550010:intron 45.0%
AGAAAGCAACTCCTAGGCTT+TGG + chr4_1:45402980-45402999 None:intergenic 45.0%
CACGATAGAAAGCAACTCCT+AGG + chr4_1:45402986-45403005 None:intergenic 45.0%
! CTAGGAGTTGCTTTCTATCG+TGG - chr4_1:45402984-45403003 Msa0550010:intron 45.0%
! AGGAGTTGCTTTCTATCGTG+GGG - chr4_1:45402986-45403005 Msa0550010:intron 45.0%
TTGACAACCTGAACAACTGG+AGG - chr4_1:45403054-45403073 Msa0550010:CDS 45.0%
TGACAACCTGAACAACTGGA+GGG - chr4_1:45403055-45403074 Msa0550010:CDS 45.0%
GGAAAATTCTCTGGATCGGA+AGG + chr4_1:45403214-45403233 None:intergenic 45.0%
GGTTTCAGAAAAGAAGGCTC+GGG - chr4_1:45403420-45403439 Msa0550010:intron 45.0%
! TTTCAGGGCATCCTTTGCTA+TGG + chr4_1:45403527-45403546 None:intergenic 45.0%
CAAAGGATGCCCTGAAAAGT+GGG - chr4_1:45403530-45403549 Msa0550010:intron 45.0%
AAAGGATGCCCTGAAAAGTG+GGG - chr4_1:45403531-45403550 Msa0550010:intron 45.0%
!! TTCCTCTTCCCCACTTTTCA+GGG + chr4_1:45403542-45403561 None:intergenic 45.0%
CAACATCAATTGTGTCTGGC+AGG + chr4_1:45403984-45404003 None:intergenic 45.0%
CTGCCAGACACAATTGATGT+TGG - chr4_1:45403982-45404001 Msa0550010:intron 45.0%
TTGGAAACAGCAATCAGCCA+AGG - chr4_1:45404001-45404020 Msa0550010:intron 45.0%
!! GCGATTTGTTGGTGCTTGTT+TGG - chr4_1:45404175-45404194 Msa0550010:exon 45.0%
GGAGGAAGAGTTAACCGCTT+TGG + chr4_1:45400736-45400755 None:intergenic 50.0%
!! AAGAGCGTTCTTCTACGGGA+AGG + chr4_1:45400772-45400791 None:intergenic 50.0%
GTCATCATTCTCGGTGACAG+CGG - chr4_1:45400796-45400815 Msa0550010:three_prime_UTR 50.0%
TCATCATTCTCGGTGACAGC+GGG - chr4_1:45400797-45400816 Msa0550010:three_prime_UTR 50.0%
! TGCCCAACATGTGTCACTGT+CGG + chr4_1:45401221-45401240 None:intergenic 50.0%
! ACGGGCTTGTGTATGGGTTT+TGG - chr4_1:45402411-45402430 Msa0550010:intron 50.0%
! CGGGCTTGTGTATGGGTTTT+GGG - chr4_1:45402412-45402431 Msa0550010:intron 50.0%
!! CTAGGCTTTGGAATCTCTCC+TGG + chr4_1:45402968-45402987 None:intergenic 50.0%
CAGGAGAGATTCCAAAGCCT+AGG - chr4_1:45402966-45402985 Msa0550010:intron 50.0%
ATTCCTCCCTCCAGTTGTTC+AGG + chr4_1:45403064-45403083 None:intergenic 50.0%
!! TGATGGTGGGAACAGTAGAG+TGG - chr4_1:45403264-45403283 Msa0550010:intron 50.0%
! GGGCATCCTTTGCTATGGTT+TGG + chr4_1:45403522-45403541 None:intergenic 50.0%
GCAAAGGATGCCCTGAAAAG+TGG - chr4_1:45403529-45403548 Msa0550010:intron 50.0%
!! CTTCCTCTTCCCCACTTTTC+AGG + chr4_1:45403543-45403562 None:intergenic 50.0%
AGCAATCAGCCAAGGTCATC+AGG - chr4_1:45404009-45404028 Msa0550010:intron 50.0%
CACTCACATCCTGATGACCT+TGG + chr4_1:45404021-45404040 None:intergenic 50.0%
TCTAGCCGTTGCTGTCTATG+AGG - chr4_1:45404107-45404126 Msa0550010:intron 50.0%
!! GAAGGCATCGTTCAGATCGG+AGG + chr4_1:45400754-45400773 None:intergenic 55.0%
!! CGGGAAGGCATCGTTCAGAT+CGG + chr4_1:45400757-45400776 None:intergenic 55.0%
ACACGCGTCTGTCAGACATG+CGG - chr4_1:45401185-45401204 Msa0550010:intron 55.0%
CAGTGACACATGTTGGGCAC+TGG - chr4_1:45401222-45401241 Msa0550010:intron 55.0%
TCGTGACATAGCGGCTATGG+CGG - chr4_1:45401657-45401676 Msa0550010:intron 55.0%
! GATTTGGGATACAGCTGGCC+AGG - chr4_1:45402947-45402966 Msa0550010:intron 55.0%
CAACCTGAACAACTGGAGGG+AGG - chr4_1:45403058-45403077 Msa0550010:CDS 55.0%
CAGAAAAGAAGGCTCGGGCA+TGG - chr4_1:45403425-45403444 Msa0550010:intron 55.0%
TGCCCTGAAAAGTGGGGAAG+AGG - chr4_1:45403537-45403556 Msa0550010:intron 55.0%
CACGCGTCTGTCAGACATGC+GGG - chr4_1:45401186-45401205 Msa0550010:intron 60.0%
CGGGCATGGTGTGCAGCAAA+AGG - chr4_1:45403439-45403458 Msa0550010:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 45400597 45404353 45400597 ID=Msa0550010;Name=Msa0550010
chr4_1 mRNA 45400597 45404353 45400597 ID=Msa0550010-mRNA-1;Parent=Msa0550010;Name=Msa0550010-mRNA-1;_AED=0.11;_eAED=0.11;_QI=169|0.8|1|1|1|1|6|309|197
chr4_1 exon 45400597 45400972 45400597 ID=Msa0550010-mRNA-1:exon:11983;Parent=Msa0550010-mRNA-1
chr4_1 exon 45401384 45401529 45401384 ID=Msa0550010-mRNA-1:exon:11982;Parent=Msa0550010-mRNA-1
chr4_1 exon 45401665 45401745 45401665 ID=Msa0550010-mRNA-1:exon:11981;Parent=Msa0550010-mRNA-1
chr4_1 exon 45401856 45402002 45401856 ID=Msa0550010-mRNA-1:exon:11980;Parent=Msa0550010-mRNA-1
chr4_1 exon 45402988 45403087 45402988 ID=Msa0550010-mRNA-1:exon:11979;Parent=Msa0550010-mRNA-1
chr4_1 exon 45404132 45404353 45404132 ID=Msa0550010-mRNA-1:exon:11978;Parent=Msa0550010-mRNA-1
chr4_1 five_prime_UTR 45404185 45404353 45404185 ID=Msa0550010-mRNA-1:five_prime_utr;Parent=Msa0550010-mRNA-1
chr4_1 CDS 45404132 45404184 45404132 ID=Msa0550010-mRNA-1:cds;Parent=Msa0550010-mRNA-1
chr4_1 CDS 45402988 45403087 45402988 ID=Msa0550010-mRNA-1:cds;Parent=Msa0550010-mRNA-1
chr4_1 CDS 45401856 45402002 45401856 ID=Msa0550010-mRNA-1:cds;Parent=Msa0550010-mRNA-1
chr4_1 CDS 45401665 45401745 45401665 ID=Msa0550010-mRNA-1:cds;Parent=Msa0550010-mRNA-1
chr4_1 CDS 45401384 45401529 45401384 ID=Msa0550010-mRNA-1:cds;Parent=Msa0550010-mRNA-1
chr4_1 CDS 45400906 45400972 45400906 ID=Msa0550010-mRNA-1:cds;Parent=Msa0550010-mRNA-1
chr4_1 three_prime_UTR 45400597 45400905 45400597 ID=Msa0550010-mRNA-1:three_prime_utr;Parent=Msa0550010-mRNA-1
Gene Sequence

>Msa0550010

ATGCCTTCCCGTAGAAGAACGCTCTTGAAAGTCATCATTCTCGGTGACAGCGGATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCTGACTTCTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAGGAGAGATTCCAAAGCCTAGGAGTTGCTTTCTATCGTGGGGCTGATTGCTGTGTTCTTGTATATGATGTTAATTCAATGAAATCATTTGACAACCTGAACAACTGGAGGGAGGAATTTCTGATTCAAGCAAATCCTTCCGATCCAGAGAATTTTCCTTTTGTTGTTATAGGAAACAAGATCGACATTGATGGTGGGAACAGTAGAGTGGTTTCAGAAAAGAAGGCTCGGGCATGGTGTGCAGCAAAAGGAAATATCCCATATTTTGAGACATCTGCCAAAGAAGGTATTAATGTCGAAGAAGCATTCCAAACCATAGCAAAGGATGCCCTGAAAAGTGGGGAAGAGGAAGAATTATACCTGCCAGACACAATTGATGTTGGAAACAGCAATCAGCCAAGGTCATCAGGATGTGAGTGCTGA
Protein sequence

>Msa0550010

MPSRRRTLLKVIILGDSGYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSGEEEELYLPDTIDVGNSNQPRSSGCEC*