Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361470 | XP_013459866.1 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 2.69e-68 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361470 | sp|Q9FLP6|SUMO2_ARATH | 91.489 | 94 | 5 | 2 | 5 | 98 | 2 | 92 | 1.37e-56 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361470 | I3SU86 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 1.29e-68 | 209 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008410 | Msa0361470 | 0.813171 | 2.929756e-51 | -8.615850e-47 |
| Msa0115990 | Msa0361470 | 0.807566 | 4.747444e-50 | -8.615850e-47 |
| Msa0191050 | Msa0361470 | 0.812306 | 4.531289e-51 | -8.615850e-47 |
| Msa0233350 | Msa0361470 | 0.809377 | 1.949667e-50 | -8.615850e-47 |
| Msa0311700 | Msa0361470 | 0.801770 | 7.696433e-49 | -8.615850e-47 |
| Msa0361470 | Msa0453690 | 0.813998 | 1.926582e-51 | -8.615850e-47 |
| Msa0361470 | Msa0462390 | 0.816311 | 5.904771e-52 | -8.615850e-47 |
| Msa0361470 | Msa0462430 | 0.819736 | 9.928168e-53 | -8.615850e-47 |
| Msa0361470 | Msa0462480 | 0.816433 | 5.544570e-52 | -8.615850e-47 |
| Msa0361470 | Msa0603540 | 0.813824 | 2.105080e-51 | -8.615850e-47 |
| Msa0361470 | Msa0687020 | 0.809577 | 1.766129e-50 | -8.615850e-47 |
| Msa0361470 | Msa0722020 | 0.821705 | 3.503613e-53 | -8.615850e-47 |
| Msa0361470 | Msa0761940 | 0.805088 | 1.580684e-49 | -8.615850e-47 |
| Msa0361470 | Msa0763020 | 0.809353 | 1.973215e-50 | -8.615850e-47 |
| Msa0361470 | Msa0763070 | 0.824103 | 9.677834e-54 | -8.615850e-47 |
| Msa0361470 | Msa0869100 | 0.812187 | 4.809047e-51 | -8.615850e-47 |
| Msa0361470 | Msa0869120 | 0.827806 | 1.276120e-54 | -8.615850e-47 |
| Msa0361470 | Msa0967370 | 0.807928 | 3.977863e-50 | -8.615850e-47 |
| Msa0361470 | Msa1201560 | 0.818925 | 1.519974e-52 | -8.615850e-47 |
| Msa0361470 | Msa1294480 | 0.808256 | 3.386864e-50 | -8.615850e-47 |
| Msa0361470 | Msa1305340 | 0.803145 | 4.009192e-49 | -8.615850e-47 |
| Msa0361470 | Msa1305710 | 0.824115 | 9.615406e-54 | -8.615850e-47 |
| Msa0361470 | Msa1461280 | 0.809960 | 1.461124e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361470 | MtrunA17_Chr3g0099771 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 2.48e-72 | 209 |
| Msa0361470 | MtrunA17_Chr3g0099761 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 5.23e-72 | 209 |
| Msa0361470 | MtrunA17_Chr8g0337911 | 60.811 | 74 | 29 | 0 | 21 | 94 | 212 | 285 | 1.07e-27 | 103 |
| Msa0361470 | MtrunA17_Chr8g0337911 | 61.972 | 71 | 27 | 0 | 23 | 93 | 291 | 361 | 1.79e-22 | 89.4 |
| Msa0361470 | MtrunA17_Chr8g0337911 | 51.724 | 87 | 38 | 1 | 11 | 93 | 121 | 207 | 1.08e-21 | 87.0 |
| Msa0361470 | MtrunA17_Chr8g0337911 | 46.835 | 79 | 39 | 2 | 23 | 100 | 57 | 133 | 8.21e-16 | 70.9 |
| Msa0361470 | MtrunA17_Chr8g0337921 | 46.237 | 93 | 49 | 1 | 3 | 95 | 64 | 155 | 3.38e-26 | 97.1 |
| Msa0361470 | MtrunA17_Chr8g0337921 | 52.632 | 76 | 36 | 0 | 23 | 98 | 162 | 237 | 1.77e-21 | 84.7 |
| Msa0361470 | MtrunA17_Chr3g0099841 | 45.283 | 53 | 29 | 0 | 29 | 81 | 39 | 91 | 4.07e-11 | 54.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361470 | AT5G55160.1 | 91.489 | 94 | 5 | 2 | 5 | 98 | 2 | 92 | 1.40e-57 | 172 |
| Msa0361470 | AT4G26840.1 | 91.111 | 90 | 8 | 0 | 7 | 96 | 2 | 91 | 1.40e-57 | 172 |
| Msa0361470 | AT5G55160.2 | 80.374 | 107 | 5 | 3 | 5 | 98 | 2 | 105 | 5.12e-54 | 164 |
| Msa0361470 | AT5G55856.1 | 49.438 | 89 | 45 | 0 | 10 | 98 | 2 | 90 | 1.05e-26 | 94.7 |
| Msa0361470 | AT5G55170.1 | 50.562 | 89 | 42 | 1 | 12 | 98 | 5 | 93 | 2.62e-25 | 91.7 |
| Msa0361470 | AT5G55855.2 | 46.512 | 86 | 46 | 0 | 13 | 98 | 5 | 90 | 7.14e-24 | 87.4 |
| Msa0361470 | AT5G48710.3 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.78e-23 | 85.5 |
| Msa0361470 | AT5G48710.2 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.78e-23 | 85.5 |
| Msa0361470 | AT5G48710.1 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.78e-23 | 85.5 |
| Msa0361470 | AT5G55170.3 | 47.191 | 89 | 41 | 2 | 12 | 98 | 5 | 89 | 7.34e-21 | 80.1 |
| Msa0361470 | AT2G32765.1 | 43.421 | 76 | 43 | 0 | 23 | 98 | 28 | 103 | 7.96e-21 | 80.1 |
| Msa0361470 | AT5G48700.1 | 42.222 | 90 | 50 | 2 | 11 | 98 | 19 | 108 | 6.84e-18 | 72.8 |
| Msa0361470 | AT5G55170.2 | 47.887 | 71 | 35 | 1 | 12 | 80 | 5 | 75 | 2.25e-17 | 71.2 |
| Msa0361470 | AT5G48710.4 | 39.437 | 71 | 42 | 1 | 12 | 81 | 17 | 87 | 3.85e-14 | 62.8 |
Find 40 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAGTTCAATCACTTTA+AGG | 0.139589 | 3_1:-51957746 | None:intergenic |
| ATGAAGCTTCTGCTATATTA+TGG | 0.293726 | 3_1:+51957459 | Msa0361470:three_prime_UTR |
| GAAAAGCGCGTTTGCATAAT+CGG | 0.300957 | 3_1:+51955275 | Msa0361470:five_prime_UTR |
| TTCTTGTCTTCCTCAGTGTT+GGG | 0.315048 | 3_1:-51955330 | None:intergenic |
| GATGTGAGCACCACCTGCTT+CGG | 0.338312 | 3_1:-51955355 | None:intergenic |
| ATGTGAGCACCACCTGCTTC+GGG | 0.344186 | 3_1:-51955354 | None:intergenic |
| CTTCTTGTCTTCCTCAGTGT+TGG | 0.350298 | 3_1:-51955331 | None:intergenic |
| TGCTGCAGCTGGACTTTGTA+AGG | 0.361991 | 3_1:+51957564 | Msa0361470:three_prime_UTR |
| TTTCAGTTGGAGATGGAAGA+TGG | 0.431884 | 3_1:+51957379 | Msa0361470:intron |
| TTCAGTTGGAGATGGAAGAT+GGG | 0.463188 | 3_1:+51957380 | Msa0361470:intron |
| TATCATACAGCTGCTGCAGC+TGG | 0.464158 | 3_1:+51957553 | Msa0361470:three_prime_UTR |
| TCATATTCACGAACCTCATC+GGG | 0.477321 | 3_1:-51957270 | None:intergenic |
| GAAGACAAGAAGCCCGAAGC+AGG | 0.484807 | 3_1:+51955342 | Msa0361470:CDS |
| GAGATTCTCAAGATGTCGTC+AGG | 0.499126 | 3_1:+51955297 | Msa0361470:exon |
| AATTAGTTTAACCTAGGGCC+AGG | 0.504125 | 3_1:+51957493 | Msa0361470:three_prime_UTR |
| GTCATATTCACGAACCTCAT+CGG | 0.504722 | 3_1:-51957271 | None:intergenic |
| CAACCTCAAGGTCAAGGGTC+AGG | 0.516757 | 3_1:+51955377 | Msa0361470:CDS |
| TGTCTTGTTTCAGTTGGAGA+TGG | 0.529171 | 3_1:+51957372 | Msa0361470:intron |
| AATAGAATTAGTTTAACCTA+GGG | 0.533002 | 3_1:+51957488 | Msa0361470:three_prime_UTR |
| GAATAGAATTAGTTTAACCT+AGG | 0.541167 | 3_1:+51957487 | Msa0361470:three_prime_UTR |
| ATGCATTATATGCATTAGCC+TGG | 0.557360 | 3_1:-51957511 | None:intergenic |
| ATATGCATTAGCCTGGCCCT+AGG | 0.565187 | 3_1:-51957504 | None:intergenic |
| GATGCCATGCTTCATCAGAC+AGG | 0.571646 | 3_1:+51957412 | Msa0361470:CDS |
| TTTGTTAATACGATTATGAG+TGG | 0.575035 | 3_1:+51957598 | Msa0361470:three_prime_UTR |
| GAACCTGACCCTTGACCTTG+AGG | 0.575367 | 3_1:-51955380 | None:intergenic |
| CCCATCAAAGAGAAAAGCAA+TGG | 0.577412 | 3_1:-51957223 | None:intergenic |
| ACCTCCTGTCTGATGAAGCA+TGG | 0.580486 | 3_1:-51957416 | None:intergenic |
| TCACATCAACCTCAAGGTCA+AGG | 0.582181 | 3_1:+51955371 | Msa0361470:CDS |
| GCTGCAGCTGGACTTTGTAA+GGG | 0.589108 | 3_1:+51957565 | Msa0361470:three_prime_UTR |
| CACATCAACCTCAAGGTCAA+GGG | 0.593562 | 3_1:+51955372 | Msa0361470:CDS |
| AAATGAGTATAAGCTTTCAC+AGG | 0.606888 | 3_1:-51957637 | None:intergenic |
| GCCATGCTTCATCAGACAGG+AGG | 0.612346 | 3_1:+51957415 | Msa0361470:CDS |
| GACAAGAAGCCCGAAGCAGG+TGG | 0.627526 | 3_1:+51955345 | Msa0361470:CDS |
| CATCGGGAGTCTGCTCAGCA+CGG | 0.629541 | 3_1:-51957254 | None:intergenic |
| TGGTGCTCACATCAACCTCA+AGG | 0.636973 | 3_1:+51955365 | Msa0361470:CDS |
| ACTCATAATCGTATTAACAA+AGG | 0.637523 | 3_1:-51957596 | None:intergenic |
| TGCTGAGCAGACTCCCGATG+AGG | 0.643397 | 3_1:+51957257 | Msa0361470:CDS |
| TCAGTTGGAGATGGAAGATG+GGG | 0.647712 | 3_1:+51957381 | Msa0361470:intron |
| TTACTGTGATCGTCAGTCTG+TGG | 0.670146 | 3_1:+51957191 | Msa0361470:CDS |
| TGCAGCTGCTCCCAACACTG+AGG | 0.716752 | 3_1:+51955320 | Msa0361470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTGAATTCA+TGG | + | chr3_1:51955620-51955639 | Msa0361470:intron | 10.0% |
| !!! | TTTTGAAATTTTCAGTTTTT+AGG | + | chr3_1:51955436-51955455 | Msa0361470:intron | 15.0% |
| !!! | TTTGAAATTTTCAGTTTTTA+GGG | + | chr3_1:51955437-51955456 | Msa0361470:intron | 15.0% |
| !!! | ATTATTTTTTACTATGCTTT+AGG | + | chr3_1:51955659-51955678 | Msa0361470:intron | 15.0% |
| !! | TATAGAGTATAAAATGAATT+TGG | + | chr3_1:51955864-51955883 | Msa0361470:intron | 15.0% |
| !! | AAGCTACAATATAAAATTTA+AGG | - | chr3_1:51956777-51956796 | None:intergenic | 15.0% |
| !!! | TCATTTTATACTCTATAAGT+TGG | - | chr3_1:51955861-51955880 | None:intergenic | 20.0% |
| !!! | TCTTTTTTAATAATGAATGC+TGG | + | chr3_1:51956098-51956117 | Msa0361470:intron | 20.0% |
| !!! | TATCTTTTCATGTTTTCATT+AGG | + | chr3_1:51956313-51956332 | Msa0361470:intron | 20.0% |
| !!! | TTATATCTTTGTATCTGTTT+TGG | + | chr3_1:51956420-51956439 | Msa0361470:intron | 20.0% |
| !!! | TGGTTATCTAAATTTTATAG+TGG | + | chr3_1:51956440-51956459 | Msa0361470:intron | 20.0% |
| !! | AAAAAATAATTAGAGATGTG+GGG | - | chr3_1:51956644-51956663 | None:intergenic | 20.0% |
| !! | GAAAAAATAATTAGAGATGT+GGG | - | chr3_1:51956645-51956664 | None:intergenic | 20.0% |
| !! | AGAAAAAATAATTAGAGATG+TGG | - | chr3_1:51956646-51956665 | None:intergenic | 20.0% |
| !!! | AATGTGTTTCTTTTTAATGT+CGG | + | chr3_1:51956684-51956703 | Msa0361470:intron | 20.0% |
| !!! | TTTTTGTTTCTATTGTTTGA+TGG | + | chr3_1:51956797-51956816 | Msa0361470:intron | 20.0% |
| !! | TATATCTCTATACTCAAAAT+TGG | + | chr3_1:51956838-51956857 | Msa0361470:intron | 20.0% |
| !!! | AATAGAATTAGTTTAACCTA+GGG | + | chr3_1:51957488-51957507 | Msa0361470:three_prime_UTR | 20.0% |
| ! | TCCACAAAGTTTAAATCAAA+CGG | - | chr3_1:51955466-51955485 | None:intergenic | 25.0% |
| ! | TTGATTTAAACTTTGTGGAT+CGG | + | chr3_1:51955467-51955486 | Msa0361470:intron | 25.0% |
| !! | TTATTGTTTGTTGAAGCATT+AGG | + | chr3_1:51955549-51955568 | Msa0361470:intron | 25.0% |
| !! | TATTGTTTGTTGAAGCATTA+GGG | + | chr3_1:51955550-51955569 | Msa0361470:intron | 25.0% |
| !!! | TTTTGATTTGATCGTTTGAT+AGG | + | chr3_1:51955582-51955601 | Msa0361470:intron | 25.0% |
| !!! | TTTTACTATGCTTTAGGATT+TGG | + | chr3_1:51955665-51955684 | Msa0361470:intron | 25.0% |
| ! | GATTATGAACACACAAATAA+GGG | - | chr3_1:51955713-51955732 | None:intergenic | 25.0% |
| ! | AGATTATGAACACACAAATA+AGG | - | chr3_1:51955714-51955733 | None:intergenic | 25.0% |
| !! | AATAAGATCTTTTACCAAAG+AGG | + | chr3_1:51955953-51955972 | Msa0361470:intron | 25.0% |
| !! | ATAAGATCTTTTACCAAAGA+GGG | + | chr3_1:51955954-51955973 | Msa0361470:intron | 25.0% |
| ! | ATAGAAATTAATTCCCTCTT+TGG | - | chr3_1:51955970-51955989 | None:intergenic | 25.0% |
| !!! | TTTGAGATTGTTTTTGTCTT+TGG | - | chr3_1:51956023-51956042 | None:intergenic | 25.0% |
| ! | TAAATCATGTGTGAAAAAAG+AGG | + | chr3_1:51956067-51956086 | Msa0361470:intron | 25.0% |
| ! | ACTTCAAAAAACTATGTTAG+TGG | + | chr3_1:51956179-51956198 | Msa0361470:intron | 25.0% |
| !!! | CTATGTTAGTGGTTATTTTT+TGG | + | chr3_1:51956190-51956209 | Msa0361470:intron | 25.0% |
| ! | GCTATGAATTATTGTTCATT+CGG | + | chr3_1:51956238-51956257 | Msa0361470:intron | 25.0% |
| ! | CTATGAATTATTGTTCATTC+GGG | + | chr3_1:51956239-51956258 | Msa0361470:intron | 25.0% |
| !! | GTTTTCATTAGGATATCTTT+TGG | + | chr3_1:51956324-51956343 | Msa0361470:intron | 25.0% |
| !! | AAATTTTATAGTGGCACAAT+TGG | + | chr3_1:51956449-51956468 | Msa0361470:intron | 25.0% |
| ! | AGAGATATAATTGATCTAGA+AGG | - | chr3_1:51956827-51956846 | None:intergenic | 25.0% |
| ! | TTGGAATTATATGCTAATCT+TGG | + | chr3_1:51957087-51957106 | Msa0361470:intron | 25.0% |
| !! | TATTTTCATGCCATAAAACA+TGG | - | chr3_1:51957352-51957371 | None:intergenic | 25.0% |
| !!! | AAAATATGTCTTGTTTCAGT+TGG | + | chr3_1:51957366-51957385 | Msa0361470:intron | 25.0% |
| !! | GAATAGAATTAGTTTAACCT+AGG | + | chr3_1:51957487-51957506 | Msa0361470:three_prime_UTR | 25.0% |
| ! | ACTCATAATCGTATTAACAA+AGG | - | chr3_1:51957599-51957618 | None:intergenic | 25.0% |
| ! | TTTGTTAATACGATTATGAG+TGG | + | chr3_1:51957598-51957617 | Msa0361470:three_prime_UTR | 25.0% |
| ! | TCCGTTTGATTTAAACTTTG+TGG | + | chr3_1:51955462-51955481 | Msa0361470:intron | 30.0% |
| !!! | GATTTTTAACTTCGGTTACT+TGG | + | chr3_1:51955491-51955510 | Msa0361470:intron | 30.0% |
| ! | TGGGATATATGTATTGCTTT+TGG | + | chr3_1:51956150-51956169 | Msa0361470:intron | 30.0% |
| AAAAGTGGAACCAAAAGATT+TGG | - | chr3_1:51956271-51956290 | None:intergenic | 30.0% | |
| !!! | AAATCTTTTGGTTCCACTTT+TGG | + | chr3_1:51956270-51956289 | Msa0361470:intron | 30.0% |
| !!! | AATCTTTTGGTTCCACTTTT+GGG | + | chr3_1:51956271-51956290 | Msa0361470:intron | 30.0% |
| TTGGTTTCTTCAGAAAAACA+TGG | + | chr3_1:51956468-51956487 | Msa0361470:intron | 30.0% | |
| TGGTTTCTTCAGAAAAACAT+GGG | + | chr3_1:51956469-51956488 | Msa0361470:intron | 30.0% | |
| TGATGTTTAATTAGAGAGCA+GGG | + | chr3_1:51956492-51956511 | Msa0361470:intron | 30.0% | |
| CAATATCAATTGGAGAGAAT+GGG | + | chr3_1:51956572-51956591 | Msa0361470:intron | 30.0% | |
| ! | CAGTTGTGTTTCATCTTTTA+TGG | + | chr3_1:51956595-51956614 | Msa0361470:intron | 30.0% |
| ! | TATAAGTTTGGCTTACAAAG+AGG | + | chr3_1:51956749-51956768 | Msa0361470:intron | 30.0% |
| !! | TTCTAAAGAGAGTTTTACTC+TGG | + | chr3_1:51956883-51956902 | Msa0361470:intron | 30.0% |
| CTCGATAATAACACTTTCAA+TGG | - | chr3_1:51956924-51956943 | None:intergenic | 30.0% | |
| ! | AGTTTTCATATCATCAGTCT+TGG | + | chr3_1:51956990-51957009 | Msa0361470:intron | 30.0% |
| TCTTGGTTACTGTTGTAAAT+TGG | + | chr3_1:51957007-51957026 | Msa0361470:intron | 30.0% | |
| ACTGTTGTAAATTGGTTACA+TGG | + | chr3_1:51957015-51957034 | Msa0361470:intron | 30.0% | |
| GGATACATGAAACTAAACAT+TGG | + | chr3_1:51957068-51957087 | Msa0361470:intron | 30.0% | |
| ATGAAGCTTCTGCTATATTA+TGG | + | chr3_1:51957459-51957478 | Msa0361470:three_prime_UTR | 30.0% | |
| AAATGAGTATAAGCTTTCAC+AGG | - | chr3_1:51957640-51957659 | None:intergenic | 30.0% | |
| GATCAAGTTCAATCACTTTA+AGG | - | chr3_1:51957749-51957768 | None:intergenic | 30.0% | |
| TGTTTCTTCCTTCGATTTCT+AGG | + | chr3_1:51955406-51955425 | Msa0361470:intron | 35.0% | |
| GTTTCTTCCTTCGATTTCTA+GGG | + | chr3_1:51955407-51955426 | Msa0361470:intron | 35.0% | |
| !!! | GGATCGGTGATTTTTAACTT+CGG | + | chr3_1:51955483-51955502 | Msa0361470:intron | 35.0% |
| ! | TGGTATCTTGTTGATGAGTT+GGG | + | chr3_1:51956131-51956150 | Msa0361470:intron | 35.0% |
| TTGGGTGATATGGAAACATT+AGG | + | chr3_1:51956289-51956308 | Msa0361470:intron | 35.0% | |
| AAACGTGCAAACATGAAAAG+TGG | - | chr3_1:51956352-51956371 | None:intergenic | 35.0% | |
| GTGATGTTTAATTAGAGAGC+AGG | + | chr3_1:51956491-51956510 | Msa0361470:intron | 35.0% | |
| ATATTGCAAGGGAACACTTT+CGG | - | chr3_1:51956558-51956577 | None:intergenic | 35.0% | |
| TGTTCCCTTGCAATATCAAT+TGG | + | chr3_1:51956562-51956581 | Msa0361470:intron | 35.0% | |
| CTCTCCAATTGATATTGCAA+GGG | - | chr3_1:51956569-51956588 | None:intergenic | 35.0% | |
| TCTCTCCAATTGATATTGCA+AGG | - | chr3_1:51956570-51956589 | None:intergenic | 35.0% | |
| GCAATATCAATTGGAGAGAA+TGG | + | chr3_1:51956571-51956590 | Msa0361470:intron | 35.0% | |
| ATACAGATTGCAGACATGAA+GGG | - | chr3_1:51956732-51956751 | None:intergenic | 35.0% | |
| TATACAGATTGCAGACATGA+AGG | - | chr3_1:51956733-51956752 | None:intergenic | 35.0% | |
| GTCTGCAATCTGTATAAGTT+TGG | + | chr3_1:51956737-51956756 | Msa0361470:intron | 35.0% | |
| TTGGACATTTCAAAGTGAAC+TGG | + | chr3_1:51956857-51956876 | Msa0361470:intron | 35.0% | |
| !! | TTTTACTCTGGTGTTGGATT+TGG | + | chr3_1:51956895-51956914 | Msa0361470:intron | 35.0% |
| TCTTGGTTACTGTCGTAAAT+TGG | + | chr3_1:51957044-51957063 | Msa0361470:intron | 35.0% | |
| ! | ATGCTAATCTTGGTCTGTTT+TGG | + | chr3_1:51957097-51957116 | Msa0361470:intron | 35.0% |
| !! | ATGGTAACGAAGTGTTTTTC+AGG | + | chr3_1:51957130-51957149 | Msa0361470:CDS | 35.0% |
| !!! | AAGTGTTTTTCAGGATCAAG+AGG | + | chr3_1:51957139-51957158 | Msa0361470:CDS | 35.0% |
| !! | TCCATTGCTTTTCTCTTTGA+TGG | + | chr3_1:51957222-51957241 | Msa0361470:CDS | 35.0% |
| !! | CCATTGCTTTTCTCTTTGAT+GGG | + | chr3_1:51957223-51957242 | Msa0361470:CDS | 35.0% |
| ! | TGTCTGACATCCATGTTTTA+TGG | + | chr3_1:51957339-51957358 | Msa0361470:intron | 35.0% |
| ATGCATTATATGCATTAGCC+TGG | - | chr3_1:51957514-51957533 | None:intergenic | 35.0% | |
| ! | GAAAAGCGCGTTTGCATAAT+CGG | + | chr3_1:51955275-51955294 | Msa0361470:five_prime_UTR | 40.0% |
| TTCTTGTCTTCCTCAGTGTT+GGG | - | chr3_1:51955333-51955352 | None:intergenic | 40.0% | |
| AACGAAACCCTAGAAATCGA+AGG | - | chr3_1:51955417-51955436 | None:intergenic | 40.0% | |
| TGAATGCTGGAATGCTTATG+TGG | + | chr3_1:51956111-51956130 | Msa0361470:intron | 40.0% | |
| ! | GTGGTATCTTGTTGATGAGT+TGG | + | chr3_1:51956130-51956149 | Msa0361470:intron | 40.0% |
| GTTTCCATATCACCCAAAAG+TGG | - | chr3_1:51956286-51956305 | None:intergenic | 40.0% | |
| ! | AGAGAGTTTTACTCTGGTGT+TGG | + | chr3_1:51956889-51956908 | Msa0361470:intron | 40.0% |
| ! | TGGTTACATGGAACTAGTCT+TGG | + | chr3_1:51957027-51957046 | Msa0361470:intron | 40.0% |
| TGGTTACTGTCGTAAATTGG+TGG | + | chr3_1:51957047-51957066 | Msa0361470:intron | 40.0% | |
| !! | TGGTCTGTTTTGGATGTTGT+AGG | + | chr3_1:51957107-51957126 | Msa0361470:intron | 40.0% |
| !! | CTGTTTTGGATGTTGTAGGA+TGG | + | chr3_1:51957111-51957130 | Msa0361470:intron | 40.0% |
| CCCATCAAAGAGAAAAGCAA+TGG | - | chr3_1:51957226-51957245 | None:intergenic | 40.0% | |
| TCATATTCACGAACCTCATC+GGG | - | chr3_1:51957273-51957292 | None:intergenic | 40.0% | |
| GTCATATTCACGAACCTCAT+CGG | - | chr3_1:51957274-51957293 | None:intergenic | 40.0% | |
| !! | TGTCTTGTTTCAGTTGGAGA+TGG | + | chr3_1:51957372-51957391 | Msa0361470:intron | 40.0% |
| TTTCAGTTGGAGATGGAAGA+TGG | + | chr3_1:51957379-51957398 | Msa0361470:intron | 40.0% | |
| TTCAGTTGGAGATGGAAGAT+GGG | + | chr3_1:51957380-51957399 | Msa0361470:intron | 40.0% | |
| ! | AATTAGTTTAACCTAGGGCC+AGG | + | chr3_1:51957493-51957512 | Msa0361470:three_prime_UTR | 40.0% |
| ! | CGCTTTTCTGTGGAATCACA+CGG | - | chr3_1:51955263-51955282 | None:intergenic | 45.0% |
| ! | TATGCAAACGCGCTTTTCTG+TGG | - | chr3_1:51955273-51955292 | None:intergenic | 45.0% |
| GAGATTCTCAAGATGTCGTC+AGG | + | chr3_1:51955297-51955316 | Msa0361470:exon | 45.0% | |
| CTTCTTGTCTTCCTCAGTGT+TGG | - | chr3_1:51955334-51955353 | None:intergenic | 45.0% | |
| TCACATCAACCTCAAGGTCA+AGG | + | chr3_1:51955371-51955390 | Msa0361470:CDS | 45.0% | |
| CACATCAACCTCAAGGTCAA+GGG | + | chr3_1:51955372-51955391 | Msa0361470:CDS | 45.0% | |
| TGGTTTCATACACTGTCGTG+TGG | - | chr3_1:51955841-51955860 | None:intergenic | 45.0% | |
| ! | CGGGTGATAGCCAAATCTTT+TGG | + | chr3_1:51956258-51956277 | Msa0361470:intron | 45.0% |
| !! | GGTTCCACTTTTGGGTGATA+TGG | + | chr3_1:51956279-51956298 | Msa0361470:intron | 45.0% |
| AGAGCAGGGATAGTGTGTAT+CGG | + | chr3_1:51956506-51956525 | Msa0361470:intron | 45.0% | |
| ! | TACTCTGGTGTTGGATTTGG+TGG | + | chr3_1:51956898-51956917 | Msa0361470:intron | 45.0% |
| TTACTGTGATCGTCAGTCTG+TGG | + | chr3_1:51957191-51957210 | Msa0361470:CDS | 45.0% | |
| TCAGTTGGAGATGGAAGATG+GGG | + | chr3_1:51957381-51957400 | Msa0361470:intron | 45.0% | |
| !! | AATTATTATCAAAATATATT+TGG | - | chr3_1:51957320-51957339 | None:intergenic | 5.0% |
| TGGTGCTCACATCAACCTCA+AGG | + | chr3_1:51955365-51955384 | Msa0361470:CDS | 50.0% | |
| GATGCCATGCTTCATCAGAC+AGG | + | chr3_1:51957412-51957431 | Msa0361470:CDS | 50.0% | |
| ACCTCCTGTCTGATGAAGCA+TGG | - | chr3_1:51957419-51957438 | None:intergenic | 50.0% | |
| ! | ATATGCATTAGCCTGGCCCT+AGG | - | chr3_1:51957507-51957526 | None:intergenic | 50.0% |
| TATCATACAGCTGCTGCAGC+TGG | + | chr3_1:51957553-51957572 | Msa0361470:three_prime_UTR | 50.0% | |
| TGCTGCAGCTGGACTTTGTA+AGG | + | chr3_1:51957564-51957583 | Msa0361470:three_prime_UTR | 50.0% | |
| GCTGCAGCTGGACTTTGTAA+GGG | + | chr3_1:51957565-51957584 | Msa0361470:three_prime_UTR | 50.0% | |
| GAAGACAAGAAGCCCGAAGC+AGG | + | chr3_1:51955342-51955361 | Msa0361470:CDS | 55.0% | |
| ATGTGAGCACCACCTGCTTC+GGG | - | chr3_1:51955357-51955376 | None:intergenic | 55.0% | |
| GATGTGAGCACCACCTGCTT+CGG | - | chr3_1:51955358-51955377 | None:intergenic | 55.0% | |
| CAACCTCAAGGTCAAGGGTC+AGG | + | chr3_1:51955377-51955396 | Msa0361470:CDS | 55.0% | |
| GAACCTGACCCTTGACCTTG+AGG | - | chr3_1:51955383-51955402 | None:intergenic | 55.0% | |
| GCCATGCTTCATCAGACAGG+AGG | + | chr3_1:51957415-51957434 | Msa0361470:CDS | 55.0% | |
| TGCAGCTGCTCCCAACACTG+AGG | + | chr3_1:51955320-51955339 | Msa0361470:CDS | 60.0% | |
| GACAAGAAGCCCGAAGCAGG+TGG | + | chr3_1:51955345-51955364 | Msa0361470:CDS | 60.0% | |
| CATCGGGAGTCTGCTCAGCA+CGG | - | chr3_1:51957257-51957276 | None:intergenic | 60.0% | |
| TGCTGAGCAGACTCCCGATG+AGG | + | chr3_1:51957257-51957276 | Msa0361470:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 51955237 | 51957795 | 51955237 | ID=Msa0361470;Name=Msa0361470 |
| chr3_1 | mRNA | 51955237 | 51957795 | 51955237 | ID=Msa0361470-mRNA-1;Parent=Msa0361470;Name=Msa0361470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=72|1|1|1|1|1|3|345|101 |
| chr3_1 | exon | 51955237 | 51955398 | 51955237 | ID=Msa0361470-mRNA-1:exon:9306;Parent=Msa0361470-mRNA-1 |
| chr3_1 | exon | 51957129 | 51957278 | 51957129 | ID=Msa0361470-mRNA-1:exon:9307;Parent=Msa0361470-mRNA-1 |
| chr3_1 | exon | 51957385 | 51957795 | 51957385 | ID=Msa0361470-mRNA-1:exon:9308;Parent=Msa0361470-mRNA-1 |
| chr3_1 | five_prime_UTR | 51955237 | 51955308 | 51955237 | ID=Msa0361470-mRNA-1:five_prime_utr;Parent=Msa0361470-mRNA-1 |
| chr3_1 | CDS | 51955309 | 51955398 | 51955309 | ID=Msa0361470-mRNA-1:cds;Parent=Msa0361470-mRNA-1 |
| chr3_1 | CDS | 51957129 | 51957278 | 51957129 | ID=Msa0361470-mRNA-1:cds;Parent=Msa0361470-mRNA-1 |
| chr3_1 | CDS | 51957385 | 51957450 | 51957385 | ID=Msa0361470-mRNA-1:cds;Parent=Msa0361470-mRNA-1 |
| chr3_1 | three_prime_UTR | 51957451 | 51957795 | 51957451 | ID=Msa0361470-mRNA-1:three_prime_utr;Parent=Msa0361470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
