AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0869120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0869120 MtrunA17_Chr6g0450171 79.630 216 3 1 1 216 1 175 3.84e-121 340
Msa0869120 MtrunA17_Chr1g0176311 31.959 97 66 0 107 203 85 181 4.71e-16 73.2
Msa0869120 MtrunA17_Chr1g0176321 34.653 101 63 2 107 207 75 172 6.70e-15 70.1
Msa0869120 MtrunA17_Chr4g0001641 50.943 53 26 0 151 203 13 65 7.94e-14 64.3
Msa0869120 MtrunA17_Chr5g0427291 50.943 53 26 0 151 203 118 170 7.01e-13 64.7
Msa0869120 MtrunA17_Chr1g0194801 23.810 210 101 5 1 204 1 157 9.90e-13 63.5
Msa0869120 MtrunA17_Chr1g0192651 22.857 210 111 5 3 212 6 164 1.54e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0869120 AT5G14680.1 57.407 216 51 1 1 216 1 175 2.02e-86 253
Msa0869120 AT3G01520.1 58.796 216 48 1 1 216 1 175 8.10e-86 251
Msa0869120 AT3G11930.2 32.203 118 73 1 93 203 76 193 5.89e-19 81.6
Msa0869120 AT3G11930.4 35.052 97 63 0 107 203 98 194 6.20e-19 81.6
Msa0869120 AT3G11930.1 35.052 97 63 0 107 203 96 192 6.34e-19 81.6
Msa0869120 AT1G68300.1 33.333 153 92 3 61 206 11 160 1.66e-18 79.3
Msa0869120 AT3G58450.1 37.113 97 61 0 107 203 92 188 3.08e-18 79.7
Msa0869120 AT3G58450.2 39.535 86 52 0 118 203 96 181 4.05e-17 76.6
Msa0869120 AT1G09740.2 36.957 92 58 0 118 209 79 170 4.11e-15 70.9
Msa0869120 AT1G09740.1 36.957 92 58 0 118 209 79 170 4.11e-15 70.9
Msa0869120 AT3G62550.1 29.323 133 82 3 85 209 34 162 3.10e-14 68.2
Msa0869120 AT3G11930.3 28.455 123 62 1 107 203 97 219 1.18e-13 67.8

Find 62 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTGTTACGAATGATTT+TGG 0.101569 6_1:-2947460 None:intergenic
CTTGCACCTACCAAAGATTT+TGG 0.167745 6_1:-2951975 None:intergenic
CTCATTCAATATCACTTCTT+TGG 0.192686 6_1:-2950566 None:intergenic
GTCAAGAGGTGTAATGAAAT+TGG 0.240931 6_1:+2950138 Msa0869120:CDS
GAGCTTACGGAAGCAGTTTA+TGG 0.261152 6_1:+2948424 Msa0869120:CDS
AAATGGAGCGCGTACTGATA+TGG 0.271185 6_1:-2949431 None:intergenic
ATGTATGAACTATATCATTT+TGG 0.279397 6_1:+2951948 Msa0869120:three_prime_UTR
TCATTCAATATCACTTCTTT+GGG 0.324923 6_1:-2950565 None:intergenic
TCGAAATACTAGTCATCAAC+AGG 0.364069 6_1:-2951523 None:intergenic
ACTCAGTGAAAATCAAGAAA+TGG 0.366690 6_1:+2947335 Msa0869120:exon
TCAAGAGGTGTAATGAAATT+GGG 0.368776 6_1:+2950139 Msa0869120:CDS
AACTCGTTCTCTTCTTCAAA+TGG 0.395053 6_1:-2947311 None:intergenic
ATGTTATGTTAGGGCATGTT+TGG 0.395218 6_1:+2948375 Msa0869120:intron
GTTGTTGGAAGCAGAGGTCT+TGG 0.398274 6_1:+2950616 Msa0869120:CDS
CTTCCAACAACTAGTAAATC+TGG 0.412953 6_1:-2950604 None:intergenic
GAGCTGAACTGAAGGGTTGT+GGG 0.415422 6_1:+2949395 Msa0869120:CDS
GGAGCTGAACTGAAGGGTTG+TGG 0.416252 6_1:+2949394 Msa0869120:CDS
AGACTCTTTGTGAGAGCTTA+CGG 0.423369 6_1:+2948411 Msa0869120:CDS
GCGCCTTTGCTACTGATTGA+AGG 0.432365 6_1:-2947420 None:intergenic
AGCTCCACCCAACAAAGAAA+TGG 0.440404 6_1:-2949448 None:intergenic
TAATATAAATAAATAAGGTA+TGG 0.448150 6_1:+2947207 None:intergenic
CTCAGTGAAAATCAAGAAAT+GGG 0.449610 6_1:+2947336 Msa0869120:exon
GATATTGAATGAGGTGAAAC+GGG 0.455961 6_1:+2950576 Msa0869120:CDS
TGATATTGAATGAGGTGAAA+CGG 0.457358 6_1:+2950575 Msa0869120:CDS
CGTCCAGATTTACTAGTTGT+TGG 0.459311 6_1:+2950601 Msa0869120:CDS
AATGGAGCGCGTACTGATAT+GGG 0.469998 6_1:-2949430 None:intergenic
AGGAACTGACCGTCTTCATC+AGG 0.480141 6_1:-2947519 None:intergenic
GACTAGAGGGACTCATCTGC+TGG 0.484498 6_1:+2950107 Msa0869120:CDS
GTAGCAAAGGCGCTTTCGAT+TGG 0.486013 6_1:+2947430 Msa0869120:CDS
GAATCAACACGAGTTATGAT+TGG 0.488228 6_1:+2947363 Msa0869120:CDS
CTGCTTTATCCATGCTTCAC+AGG 0.507992 6_1:-2950536 None:intergenic
TAGTCATCAACAGGGTCCCT+TGG 0.510016 6_1:-2951514 None:intergenic
TTACTAGTTGTTGGAAGCAG+AGG 0.512564 6_1:+2950610 Msa0869120:CDS
TTGCTACTGATTGAAGGATG+TGG 0.520282 6_1:-2947414 None:intergenic
GTGGATAGTATCTATGCATC+GGG 0.520318 6_1:+2950051 Msa0869120:CDS
ATATAGATTACCTGTGTTTG+TGG 0.521571 6_1:+2951552 Msa0869120:three_prime_UTR
TTGCGTTTGATAGTCATGAC+AGG 0.533981 6_1:-2951478 None:intergenic
CGTGGATAGTATCTATGCAT+CGG 0.551182 6_1:+2950050 Msa0869120:CDS
TTTGCAGGGAGCTGAACTGA+AGG 0.558798 6_1:+2949387 Msa0869120:intron
CAAAGAAGTGATATTGAATG+AGG 0.559803 6_1:+2950567 Msa0869120:CDS
TACAAAGCTATCTGCTTGTG+TGG 0.567447 6_1:+2951741 Msa0869120:three_prime_UTR
AGCTGAACTGAAGGGTTGTG+GGG 0.572543 6_1:+2949396 Msa0869120:CDS
GTGAACGAGTCAAGCTTGAA+AGG 0.573861 6_1:+2947387 Msa0869120:CDS
CTGTGAAGCATGGATAAAGC+AGG 0.575624 6_1:+2950537 Msa0869120:CDS
TGCTGGAATACTTCGTCAAG+AGG 0.585393 6_1:+2950124 Msa0869120:CDS
GATGACTAGTATTTCGACAA+TGG 0.586991 6_1:+2951529 Msa0869120:exon
CAAGAGGTGTAATGAAATTG+GGG 0.598611 6_1:+2950140 Msa0869120:CDS
CATCCTTCAATCAGTAGCAA+AGG 0.598974 6_1:+2947417 Msa0869120:CDS
GGCAGGCCAAAATCTTTGGT+AGG 0.599799 6_1:+2951969 Msa0869120:three_prime_UTR
TGTATGCAGTTGTTCAGTGT+AGG 0.606294 6_1:+2951619 Msa0869120:three_prime_UTR
AACAGCAAGAAAAGACTAGA+GGG 0.610121 6_1:+2950094 Msa0869120:CDS
GGTAGGTGCAAGATTGCACA+TGG 0.627527 6_1:+2951986 Msa0869120:three_prime_UTR
TGCGTTTGATAGTCATGACA+GGG 0.634272 6_1:-2951477 None:intergenic
GTTCAAGTTCCTGATGAAGA+CGG 0.636387 6_1:+2947510 Msa0869120:CDS
GCAATGCAGATGAAACTCCA+AGG 0.637395 6_1:+2951497 Msa0869120:CDS
TGTAGGTGACCTGTGAAGCA+TGG 0.639851 6_1:+2950527 Msa0869120:intron
AAACAGCAAGAAAAGACTAG+AGG 0.657657 6_1:+2950093 Msa0869120:CDS
TTGCAGGGAGCTGAACTGAA+GGG 0.663999 6_1:+2949388 Msa0869120:intron
CAATGCAGATGAAACTCCAA+GGG 0.667475 6_1:+2951498 Msa0869120:CDS
TGTGAAGCATGGATAAAGCA+GGG 0.669399 6_1:+2950538 Msa0869120:CDS
TCTTGTAGGTTACGATGACG+TGG 0.674991 6_1:+2950032 Msa0869120:intron
CGAAATACTAGTCATCAACA+GGG 0.682603 6_1:-2951522 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAAAAAAAAAAT+TGG - chr6_1:2950689-2950708 None:intergenic 0.0%
!!! ATGCTTTTTTTATTTTAATT+TGG - chr6_1:2947240-2947259 None:intergenic 10.0%
!! AAAGATAAAATAAATTCAAA+CGG - chr6_1:2948715-2948734 None:intergenic 10.0%
!! ATTCATATTTAAAAATATCA+TGG - chr6_1:2950817-2950836 None:intergenic 10.0%
!!! GTAAAAATTCTTTTTAATGA+TGG + chr6_1:2948220-2948239 Msa0869120:intron 15.0%
!!! TATTTTGATATGTTATGTTA+GGG + chr6_1:2948366-2948385 Msa0869120:intron 15.0%
!! ATAATGAATAAAGATTACAA+AGG - chr6_1:2949542-2949561 None:intergenic 15.0%
!!! CTTATTTTTTTATCTTTGAT+AGG - chr6_1:2949682-2949701 None:intergenic 15.0%
!! TGGAAAATATGAAAAAAATA+TGG - chr6_1:2949892-2949911 None:intergenic 15.0%
!! TATTATACAAAGCAAAATAA+AGG + chr6_1:2949974-2949993 Msa0869120:intron 15.0%
!! ATTATACAAAGCAAAATAAA+GGG + chr6_1:2949975-2949994 Msa0869120:intron 15.0%
!! AAATTATTGTTTAAAAACCT+CGG - chr6_1:2950266-2950285 None:intergenic 15.0%
!! CTAAATATTTATACATTTGT+AGG + chr6_1:2950510-2950529 Msa0869120:intron 15.0%
!!! CAGTTATGTTAATTAATTTT+AGG + chr6_1:2950969-2950988 Msa0869120:intron 15.0%
!!! TTTGTTTTTTTTTTTTTCGA+AGG + chr6_1:2951028-2951047 Msa0869120:intron 15.0%
!!! TTCAATTGTGTTATTTTATC+AGG + chr6_1:2947781-2947800 Msa0869120:intron 20.0%
!!! AAAATTCTTTTTAATGATGG+TGG + chr6_1:2948223-2948242 Msa0869120:intron 20.0%
!!! GTATTTTGATATGTTATGTT+AGG + chr6_1:2948365-2948384 Msa0869120:intron 20.0%
!! GCAAATTGAATTGAATAAAA+GGG - chr6_1:2949060-2949079 None:intergenic 20.0%
!!! TAGGCAAACTTTTATTAAAT+GGG - chr6_1:2949663-2949682 None:intergenic 20.0%
!!! ATAGGCAAACTTTTATTAAA+TGG - chr6_1:2949664-2949683 None:intergenic 20.0%
!! TAGATTAAGTTCAAAGTAAA+GGG - chr6_1:2949933-2949952 None:intergenic 20.0%
!! TTAGATTAAGTTCAAAGTAA+AGG - chr6_1:2949934-2949953 None:intergenic 20.0%
!!! ATGTATAAATATTTAGCTTG+TGG - chr6_1:2950506-2950525 None:intergenic 20.0%
!! TATACTGAAATATGTTACTA+AGG + chr6_1:2950744-2950763 Msa0869120:intron 20.0%
!!! GAAGTATGTTATGAATTTTT+TGG + chr6_1:2950844-2950863 Msa0869120:intron 20.0%
!!! ACTTCTTTTTTTGGAAATTA+TGG + chr6_1:2950895-2950914 Msa0869120:intron 20.0%
!! GAATAAATATAGAAGAAAAG+AGG + chr6_1:2950991-2951010 Msa0869120:intron 20.0%
!!! TTTTTTTTTTTTTCGAAGGA+TGG + chr6_1:2951032-2951051 Msa0869120:intron 20.0%
!!! ATGTATGAACTATATCATTT+TGG - chr6_1:2951948-2951967 None:intergenic 20.0%
!!! ATGTATGAACTATATCATTT+TGG + chr6_1:2951948-2951967 Msa0869120:three_prime_UTR 20.0%
!! AACATTGTTACGAATGATTT+TGG - chr6_1:2947463-2947482 None:intergenic 25.0%
! CAAATTTACTATTGATGTGT+CGG + chr6_1:2947713-2947732 Msa0869120:intron 25.0%
! AATCACATGTGTCATAAATA+TGG - chr6_1:2947758-2947777 None:intergenic 25.0%
! AGAGAAAATGACGTAATTAA+AGG - chr6_1:2947835-2947854 None:intergenic 25.0%
! TGTGATCTTAGTAACTAATT+GGG + chr6_1:2948546-2948565 Msa0869120:intron 25.0%
!!! CTTATTTCTATAAGCTCTTT+AGG + chr6_1:2948666-2948685 Msa0869120:intron 25.0%
!! TTTGATTAAGTTGTTTGTCA+AGG + chr6_1:2948793-2948812 Msa0869120:intron 25.0%
! TTTAGAGAAATTGAAACATC+TGG + chr6_1:2948930-2948949 Msa0869120:intron 25.0%
!!! AGCTTGATTTGTAATTGATT+GGG + chr6_1:2948993-2949012 Msa0869120:intron 25.0%
! CGCAAATTGAATTGAATAAA+AGG - chr6_1:2949061-2949080 None:intergenic 25.0%
! TTTATTCAATTCAATTTGCG+AGG + chr6_1:2949061-2949080 Msa0869120:intron 25.0%
! TTATTCAATTCAATTTGCGA+GGG + chr6_1:2949062-2949081 Msa0869120:intron 25.0%
!! CGTTATAATGTCCTTTTTAA+CGG + chr6_1:2949150-2949169 Msa0869120:intron 25.0%
!! GTTATAATGTCCTTTTTAAC+GGG + chr6_1:2949151-2949170 Msa0869120:intron 25.0%
! TTCTAATTGTGTTATGTTGT+CGG + chr6_1:2949491-2949510 Msa0869120:intron 25.0%
!! TTGTGATTTTGGATTTTGTT+TGG + chr6_1:2950183-2950202 Msa0869120:intron 25.0%
! TCATTCAATATCACTTCTTT+GGG - chr6_1:2950568-2950587 None:intergenic 25.0%
! AAAAATTGGACAACTCATAA+TGG - chr6_1:2950675-2950694 None:intergenic 25.0%
!!! AATTGTCAGACTTCTTTTTT+TGG + chr6_1:2950886-2950905 Msa0869120:intron 25.0%
!! TCCACAATTAAATTGTGTTT+TGG + chr6_1:2951264-2951283 Msa0869120:intron 25.0%
! ACCAAAACACAATTTAATTG+TGG - chr6_1:2951268-2951287 None:intergenic 25.0%
! TTCAACGAGTAACTTAATTA+CGG + chr6_1:2951373-2951392 Msa0869120:intron 25.0%
ACTCAGTGAAAATCAAGAAA+TGG + chr6_1:2947335-2947354 Msa0869120:exon 30.0%
CTCAGTGAAAATCAAGAAAT+GGG + chr6_1:2947336-2947355 Msa0869120:exon 30.0%
!! GTTACGAATGATTTTGGAAA+CGG - chr6_1:2947457-2947476 None:intergenic 30.0%
TGAGAACATGACATAATTGA+AGG - chr6_1:2947695-2947714 None:intergenic 30.0%
TTGAATGTAATCACATGTGT+CGG - chr6_1:2947766-2947785 None:intergenic 30.0%
TACTACTGATATCAATGTGT+CGG + chr6_1:2948032-2948051 Msa0869120:intron 30.0%
TGTAGATTGAGTTTGAACAT+AGG + chr6_1:2948329-2948348 Msa0869120:intron 30.0%
CTAAGATCACACATCAAATA+CGG - chr6_1:2948537-2948556 None:intergenic 30.0%
GTGTGATCTTAGTAACTAAT+TGG + chr6_1:2948545-2948564 Msa0869120:intron 30.0%
CAAACACTTGTAATGTTGTT+TGG + chr6_1:2948597-2948616 Msa0869120:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG - chr6_1:2948652-2948671 None:intergenic 30.0%
ACATGCATATCTATATGATG+AGG + chr6_1:2948753-2948772 Msa0869120:intron 30.0%
CATGCATATCTATATGATGA+GGG + chr6_1:2948754-2948773 Msa0869120:intron 30.0%
ATGCATATCTATATGATGAG+GGG + chr6_1:2948755-2948774 Msa0869120:intron 30.0%
CTTAATCAAACACAATGCAT+AGG - chr6_1:2948783-2948802 None:intergenic 30.0%
!! GAAAGTTTGGTTTGTTACTT+AGG + chr6_1:2948815-2948834 Msa0869120:intron 30.0%
!! GAGCTTGATTTGTAATTGAT+TGG + chr6_1:2948992-2949011 Msa0869120:intron 30.0%
!! AAAAAGTATCGCATTTAGTG+TGG + chr6_1:2949097-2949116 Msa0869120:intron 30.0%
TAAACTTTCGATGATCCTAT+TGG + chr6_1:2949256-2949275 Msa0869120:intron 30.0%
! TATTGTTTGTTGGCTGTTAT+TGG + chr6_1:2949606-2949625 Msa0869120:intron 30.0%
TGATCAAATTCATCATCTCA+GGG - chr6_1:2949777-2949796 None:intergenic 30.0%
TCTCTGTTATATCTTTCTCT+TGG + chr6_1:2949835-2949854 Msa0869120:intron 30.0%
CTCTGTTATATCTTTCTCTT+GGG + chr6_1:2949836-2949855 Msa0869120:intron 30.0%
TTATATCTTTCTCTTGGGTT+CGG + chr6_1:2949841-2949860 Msa0869120:intron 30.0%
ATGGCAAGAATACATAAAAC+AGG - chr6_1:2949873-2949892 None:intergenic 30.0%
AATATAAATAAATGCCTCGC+TGG - chr6_1:2949958-2949977 None:intergenic 30.0%
! TCAAGAGGTGTAATGAAATT+GGG + chr6_1:2950139-2950158 Msa0869120:CDS 30.0%
! TCTTTTATCACTAGTGCTTA+TGG - chr6_1:2950219-2950238 None:intergenic 30.0%
AAACAGCTTATATTCCTTGA+CGG - chr6_1:2950445-2950464 None:intergenic 30.0%
CTCATTCAATATCACTTCTT+TGG - chr6_1:2950569-2950588 None:intergenic 30.0%
CAAAGAAGTGATATTGAATG+AGG + chr6_1:2950567-2950586 Msa0869120:CDS 30.0%
TGATATTGAATGAGGTGAAA+CGG + chr6_1:2950575-2950594 Msa0869120:CDS 30.0%
TATAGAAGAAAAGAGGAAAG+TGG + chr6_1:2950998-2951017 Msa0869120:intron 30.0%
!! GTAGATAGTTTGTTATTGAG+TGG + chr6_1:2951054-2951073 Msa0869120:intron 30.0%
!! AGTTTGTTATTGAGTGGTTA+TGG + chr6_1:2951060-2951079 Msa0869120:intron 30.0%
!! GTTTGTTATTGAGTGGTTAT+GGG + chr6_1:2951061-2951080 Msa0869120:intron 30.0%
!! TGGAAACTGACTTTTATTGA+TGG - chr6_1:2951248-2951267 None:intergenic 30.0%
TGTAAATTTCTGTCAGAAAC+TGG - chr6_1:2951292-2951311 None:intergenic 30.0%
TCTCTTGAAGTTTCATATTC+TGG + chr6_1:2951321-2951340 Msa0869120:intron 30.0%
ACTTAATTACGGTCAATAAC+CGG + chr6_1:2951384-2951403 Msa0869120:intron 30.0%
ATATAGATTACCTGTGTTTG+TGG + chr6_1:2951552-2951571 Msa0869120:three_prime_UTR 30.0%
!! ATGAACTATATCATTTTGGC+AGG - chr6_1:2951952-2951971 None:intergenic 30.0%
!! ATGAACTATATCATTTTGGC+AGG + chr6_1:2951952-2951971 Msa0869120:three_prime_UTR 30.0%
AACTCGTTCTCTTCTTCAAA+TGG - chr6_1:2947314-2947333 None:intergenic 35.0%
GAATCAACACGAGTTATGAT+TGG + chr6_1:2947363-2947382 Msa0869120:CDS 35.0%
! ATGGATTAAGAGAGAAAGAG+AGG - chr6_1:2947542-2947561 None:intergenic 35.0%
!! TATGTGTGTGACTTTAGAAC+TGG + chr6_1:2948142-2948161 Msa0869120:intron 35.0%
! GAATGTGTCTGATGATGTAA+TGG + chr6_1:2948179-2948198 Msa0869120:intron 35.0%
GAACATAGGTAAGATTGTAG+TGG + chr6_1:2948343-2948362 Msa0869120:intron 35.0%
ATGTTATGTTAGGGCATGTT+TGG + chr6_1:2948375-2948394 Msa0869120:intron 35.0%
! GCTACTTTCATAAGCTATGA+TGG - chr6_1:2948490-2948509 None:intergenic 35.0%
GTAGCTTATAATTGTGATGC+TGG + chr6_1:2948505-2948524 Msa0869120:intron 35.0%
GTTGTTTGTCAAGGAAAGTT+TGG + chr6_1:2948802-2948821 Msa0869120:intron 35.0%
!! TGTTACTTAGGAAGTGTTTG+TGG + chr6_1:2948827-2948846 Msa0869120:intron 35.0%
GTTCACAAAAATGTTGTGTG+TGG + chr6_1:2948904-2948923 Msa0869120:intron 35.0%
TTGAGCAAGATGCAAACAAA+TGG - chr6_1:2948956-2948975 None:intergenic 35.0%
GATTTGTAATTGATTGGGAG+TGG + chr6_1:2948998-2949017 Msa0869120:intron 35.0%
GCATTTAGTGTGGTTAACAA+GGG + chr6_1:2949107-2949126 Msa0869120:intron 35.0%
! TAATGTCCTTTTTAACGGGA+AGG + chr6_1:2949155-2949174 Msa0869120:intron 35.0%
GAAGGTTGTGAATTGTTTAG+AGG + chr6_1:2949173-2949192 Msa0869120:intron 35.0%
ATCCTATCAAACACCTATCT+TGG + chr6_1:2949202-2949221 Msa0869120:intron 35.0%
ACATAAACCAAGACCAAGAT+AGG - chr6_1:2949218-2949237 None:intergenic 35.0%
!! TTGGTCTTGGTTTATGTGTA+GGG + chr6_1:2949221-2949240 Msa0869120:intron 35.0%
ATACTTCGGATACAAACAAG+TGG - chr6_1:2949291-2949310 None:intergenic 35.0%
TATCTGTCAATCCTCTATTG+TGG + chr6_1:2949563-2949582 Msa0869120:intron 35.0%
TCTTCACAATTCCACAATAG+AGG - chr6_1:2949577-2949596 None:intergenic 35.0%
ACGAGCTGTATATTGTTTGT+TGG + chr6_1:2949596-2949615 Msa0869120:intron 35.0%
TTTGAACACCAAATGCTACA+AGG - chr6_1:2949735-2949754 None:intergenic 35.0%
ATCTCAGGGAATGTTGATAT+CGG - chr6_1:2949763-2949782 None:intergenic 35.0%
GTGATCAAATTCATCATCTC+AGG - chr6_1:2949778-2949797 None:intergenic 35.0%
TAAAGGGAACTGCAATGTAA+TGG + chr6_1:2949991-2950010 Msa0869120:intron 35.0%
ACTTGTGTTTCGTTTCTTGT+AGG + chr6_1:2950018-2950037 Msa0869120:intron 35.0%
AAACAGCAAGAAAAGACTAG+AGG + chr6_1:2950093-2950112 Msa0869120:CDS 35.0%
AACAGCAAGAAAAGACTAGA+GGG + chr6_1:2950094-2950113 Msa0869120:CDS 35.0%
! GTCAAGAGGTGTAATGAAAT+TGG + chr6_1:2950138-2950157 Msa0869120:CDS 35.0%
! CAAGAGGTGTAATGAAATTG+GGG + chr6_1:2950140-2950159 Msa0869120:CDS 35.0%
! TTCTGCTCTACTTGTGATTT+TGG + chr6_1:2950172-2950191 Msa0869120:intron 35.0%
GATAGAAAAGCAAGTTTCAC+AGG - chr6_1:2950298-2950317 None:intergenic 35.0%
TCAAGAAAAACATGCAGTCA+AGG + chr6_1:2950376-2950395 Msa0869120:intron 35.0%
!! ATATTTAGCTTGTGGTCAAG+TGG - chr6_1:2950498-2950517 None:intergenic 35.0%
GATATTGAATGAGGTGAAAC+GGG + chr6_1:2950576-2950595 Msa0869120:CDS 35.0%
CTTCCAACAACTAGTAAATC+TGG - chr6_1:2950607-2950626 None:intergenic 35.0%
!! TCATGCACATACTTTTGGAA+AGG - chr6_1:2950643-2950662 None:intergenic 35.0%
! AGAGATCATGCACATACTTT+TGG - chr6_1:2950648-2950667 None:intergenic 35.0%
AGAGACCAAACTCTAATTCT+TGG + chr6_1:2951088-2951107 Msa0869120:intron 35.0%
GAGACCAAACTCTAATTCTT+GGG + chr6_1:2951089-2951108 Msa0869120:intron 35.0%
! GCACTGTTAGTGAATTTTGT+TGG + chr6_1:2951440-2951459 Msa0869120:CDS 35.0%
CGAAATACTAGTCATCAACA+GGG - chr6_1:2951525-2951544 None:intergenic 35.0%
TCGAAATACTAGTCATCAAC+AGG - chr6_1:2951526-2951545 None:intergenic 35.0%
GATGACTAGTATTTCGACAA+TGG + chr6_1:2951529-2951548 Msa0869120:exon 35.0%
! TTGCTACTGATTGAAGGATG+TGG - chr6_1:2947417-2947436 None:intergenic 40.0%
CATCCTTCAATCAGTAGCAA+AGG + chr6_1:2947417-2947436 Msa0869120:CDS 40.0%
! GTTCAAGTTCCTGATGAAGA+CGG + chr6_1:2947510-2947529 Msa0869120:CDS 40.0%
ATGTGTCAGACACTTCTGAT+CGG + chr6_1:2947639-2947658 Msa0869120:intron 40.0%
!! TGTGACTTTAGAACTGGTTG+TGG + chr6_1:2948148-2948167 Msa0869120:intron 40.0%
AGACTCTTTGTGAGAGCTTA+CGG + chr6_1:2948411-2948430 Msa0869120:CDS 40.0%
GATGGAGAGCTTATGGAAAT+TGG - chr6_1:2948472-2948491 None:intergenic 40.0%
! AAGCTATGATGGAGAGCTTA+TGG - chr6_1:2948479-2948498 None:intergenic 40.0%
TTGTAATTGATTGGGAGTGG+AGG + chr6_1:2949001-2949020 Msa0869120:intron 40.0%
CGCATTTAGTGTGGTTAACA+AGG + chr6_1:2949106-2949125 Msa0869120:intron 40.0%
!! TAACAAGGGCTTGGTGTATT+TGG + chr6_1:2949121-2949140 Msa0869120:intron 40.0%
TCACAACCTTCCCGTTAAAA+AGG - chr6_1:2949164-2949183 None:intergenic 40.0%
GGTTGTGAATTGTTTAGAGG+TGG + chr6_1:2949176-2949195 Msa0869120:intron 40.0%
GACCAAGATAGGTGTTTGAT+AGG - chr6_1:2949207-2949226 None:intergenic 40.0%
TCAAACACCTATCTTGGTCT+TGG + chr6_1:2949208-2949227 Msa0869120:intron 40.0%
!! CTTGGTCTTGGTTTATGTGT+AGG + chr6_1:2949220-2949239 Msa0869120:intron 40.0%
TCTTGGTTTATGTGTAGGGA+GGG + chr6_1:2949225-2949244 Msa0869120:intron 40.0%
ACTTTCGATGATCCTATTGG+TGG + chr6_1:2949259-2949278 Msa0869120:intron 40.0%
! AAGTGGATTCAACCACCAAT+AGG - chr6_1:2949274-2949293 None:intergenic 40.0%
TACTCGTATCAGTTTGTGTG+CGG + chr6_1:2949356-2949375 Msa0869120:intron 40.0%
AATGCTACAAGGATGCATTC+TGG - chr6_1:2949724-2949743 None:intergenic 40.0%
GAATGCATCCTTGTAGCATT+TGG + chr6_1:2949724-2949743 Msa0869120:intron 40.0%
GATAGGCTATCAAAAACGAG+AGG - chr6_1:2949800-2949819 None:intergenic 40.0%
!! TCGTTTTTGATAGCCTATCG+AGG + chr6_1:2949801-2949820 Msa0869120:intron 40.0%
!! CGTTTTTGATAGCCTATCGA+GGG + chr6_1:2949802-2949821 Msa0869120:intron 40.0%
GAAAGATACTTTCCCTCGAT+AGG - chr6_1:2949817-2949836 None:intergenic 40.0%
GGACAATAGATCACAGTGAA+TGG - chr6_1:2949912-2949931 None:intergenic 40.0%
GAACTTAATCTAATCCAGCG+AGG + chr6_1:2949941-2949960 Msa0869120:intron 40.0%
CGTGGATAGTATCTATGCAT+CGG + chr6_1:2950050-2950069 Msa0869120:CDS 40.0%
GTGGATAGTATCTATGCATC+GGG + chr6_1:2950051-2950070 Msa0869120:CDS 40.0%
GAAGAATCTTGTAATGACCG+AGG + chr6_1:2950246-2950265 Msa0869120:intron 40.0%
CTCTACCGTTAGATGAAGAT+TGG + chr6_1:2950402-2950421 Msa0869120:intron 40.0%
GCTGTCCAATCTTCATCTAA+CGG - chr6_1:2950410-2950429 None:intergenic 40.0%
CTGTTTGATCTGCATCTGAT+TGG + chr6_1:2950459-2950478 Msa0869120:intron 40.0%
TGTGAAGCATGGATAAAGCA+GGG + chr6_1:2950538-2950557 Msa0869120:CDS 40.0%
CGTCCAGATTTACTAGTTGT+TGG + chr6_1:2950601-2950620 Msa0869120:CDS 40.0%
TTACTAGTTGTTGGAAGCAG+AGG + chr6_1:2950610-2950629 Msa0869120:CDS 40.0%
GTTATTGAGTGGTTATGGGA+AGG + chr6_1:2951065-2951084 Msa0869120:intron 40.0%
CTCTCCCAAGAATTAGAGTT+TGG - chr6_1:2951096-2951115 None:intergenic 40.0%
ACCAAGACTCTCGAATTTCT+TGG + chr6_1:2951116-2951135 Msa0869120:intron 40.0%
CCAAGACTCTCGAATTTCTT+GGG + chr6_1:2951117-2951136 Msa0869120:intron 40.0%
CAGAACATGACAACTCAAAC+CGG - chr6_1:2951406-2951425 None:intergenic 40.0%
!! TTTGAGTTGTCATGTTCTGC+AGG + chr6_1:2951407-2951426 Msa0869120:intron 40.0%
! TTGAGTTGTCATGTTCTGCA+GGG + chr6_1:2951408-2951427 Msa0869120:intron 40.0%
! ATGTTCTGCAGGGTTTTTGT+TGG + chr6_1:2951418-2951437 Msa0869120:intron 40.0%
! TGCGTTTGATAGTCATGACA+GGG - chr6_1:2951480-2951499 None:intergenic 40.0%
! TTGCGTTTGATAGTCATGAC+AGG - chr6_1:2951481-2951500 None:intergenic 40.0%
CAATGCAGATGAAACTCCAA+GGG + chr6_1:2951498-2951517 Msa0869120:CDS 40.0%
!! TTTTTCAGCTCCACAAACAC+AGG - chr6_1:2951565-2951584 None:intergenic 40.0%
TGTATGCAGTTGTTCAGTGT+AGG + chr6_1:2951619-2951638 Msa0869120:three_prime_UTR 40.0%
TACAAAGCTATCTGCTTGTG+TGG + chr6_1:2951741-2951760 Msa0869120:three_prime_UTR 40.0%
! CTTGCACCTACCAAAGATTT+TGG + chr6_1:2951824-2951843 Msa0869120:intron 40.0%
! TTTTGGCAGGCCAAAATCTT+TGG - chr6_1:2951965-2951984 None:intergenic 40.0%
! TTTTGGCAGGCCAAAATCTT+TGG + chr6_1:2951965-2951984 Msa0869120:three_prime_UTR 40.0%
! CTTGCACCTACCAAAGATTT+TGG - chr6_1:2951824-2951843 None:intergenic 40.0%
GTGAACGAGTCAAGCTTGAA+AGG + chr6_1:2947387-2947406 Msa0869120:CDS 45.0%
GCGTCTTCGATCAGAAATGT+CGG - chr6_1:2947610-2947629 None:intergenic 45.0%
GAGCTTACGGAAGCAGTTTA+TGG + chr6_1:2948424-2948443 Msa0869120:CDS 45.0%
GCTCAAAGACGTCTGATGTA+TGG + chr6_1:2948970-2948989 Msa0869120:intron 45.0%
TAGTGTGGTTAACAAGGGCT+TGG + chr6_1:2949112-2949131 Msa0869120:intron 45.0%
GTCTTGGTTTATGTGTAGGG+AGG + chr6_1:2949224-2949243 Msa0869120:intron 45.0%
AGGGCGACGTTCAAATACTT+CGG - chr6_1:2949305-2949324 None:intergenic 45.0%
ACTCGTATCAGTTTGTGTGC+GGG + chr6_1:2949357-2949376 Msa0869120:intron 45.0%
! AATGGAGCGCGTACTGATAT+GGG - chr6_1:2949433-2949452 None:intergenic 45.0%
! AAATGGAGCGCGTACTGATA+TGG - chr6_1:2949434-2949453 None:intergenic 45.0%
TACGCGCTCCATTTCTTTGT+TGG + chr6_1:2949440-2949459 Msa0869120:intron 45.0%
ACGCGCTCCATTTCTTTGTT+GGG + chr6_1:2949441-2949460 Msa0869120:intron 45.0%
AGCTCCACCCAACAAAGAAA+TGG - chr6_1:2949451-2949470 None:intergenic 45.0%
TTGTGTTATGTTGTCGGCGA+TGG + chr6_1:2949497-2949516 Msa0869120:intron 45.0%
!! GATGGTCTTGTGCTGACAAT+TGG + chr6_1:2949515-2949534 Msa0869120:intron 45.0%
TCTTGTAGGTTACGATGACG+TGG + chr6_1:2950032-2950051 Msa0869120:intron 45.0%
TGCTGGAATACTTCGTCAAG+AGG + chr6_1:2950124-2950143 Msa0869120:CDS 45.0%
! GCTCATATTTTCGACCGTCA+AGG + chr6_1:2950428-2950447 Msa0869120:intron 45.0%
CTGCTTTATCCATGCTTCAC+AGG - chr6_1:2950539-2950558 None:intergenic 45.0%
CTGTGAAGCATGGATAAAGC+AGG + chr6_1:2950537-2950556 Msa0869120:CDS 45.0%
CCCAAGAAATTCGAGAGTCT+TGG - chr6_1:2951120-2951139 None:intergenic 45.0%
GACTCTCGAATTTCTTGGGT+AGG + chr6_1:2951121-2951140 Msa0869120:intron 45.0%
GCAATGCAGATGAAACTCCA+AGG + chr6_1:2951497-2951516 Msa0869120:CDS 45.0%
!! ATCAAAATTAAAAAATAAAA+TGG - chr6_1:2947561-2947580 None:intergenic 5.0%
! GCGCCTTTGCTACTGATTGA+AGG - chr6_1:2947423-2947442 None:intergenic 50.0%
!! GTAGCAAAGGCGCTTTCGAT+TGG + chr6_1:2947430-2947449 Msa0869120:CDS 50.0%
AGGAACTGACCGTCTTCATC+AGG - chr6_1:2947522-2947541 None:intergenic 50.0%
TGTCAGACACTTCTGATCGG+CGG + chr6_1:2947642-2947661 Msa0869120:intron 50.0%
! CGGTGTTAGTGTGTCTGTGT+CGG + chr6_1:2948052-2948071 Msa0869120:intron 50.0%
CCACTACCAACAGTGCAAGA+GGG - chr6_1:2949324-2949343 None:intergenic 50.0%
TATCAGTTTGTGTGCGGGTC+TGG + chr6_1:2949362-2949381 Msa0869120:intron 50.0%
TTTGCAGGGAGCTGAACTGA+AGG + chr6_1:2949387-2949406 Msa0869120:intron 50.0%
TTGCAGGGAGCTGAACTGAA+GGG + chr6_1:2949388-2949407 Msa0869120:intron 50.0%
GAGCTGAACTGAAGGGTTGT+GGG + chr6_1:2949395-2949414 Msa0869120:CDS 50.0%
AGCTGAACTGAAGGGTTGTG+GGG + chr6_1:2949396-2949415 Msa0869120:CDS 50.0%
CGCTCCATTTCTTTGTTGGG+TGG + chr6_1:2949444-2949463 Msa0869120:intron 50.0%
TCTTTGTTGGGTGGAGCTGT+AGG + chr6_1:2949453-2949472 Msa0869120:intron 50.0%
TGTAGGTGACCTGTGAAGCA+TGG + chr6_1:2950527-2950546 Msa0869120:intron 50.0%
GTTGTTGGAAGCAGAGGTCT+TGG + chr6_1:2950616-2950635 Msa0869120:CDS 50.0%
TAGTCATCAACAGGGTCCCT+TGG - chr6_1:2951517-2951536 None:intergenic 50.0%
GGTAGGTGCAAGATTGCACA+TGG - chr6_1:2951986-2952005 None:intergenic 50.0%
GGCAGGCCAAAATCTTTGGT+AGG - chr6_1:2951969-2951988 None:intergenic 50.0%
GGCAGGCCAAAATCTTTGGT+AGG + chr6_1:2951969-2951988 Msa0869120:three_prime_UTR 50.0%
GGTAGGTGCAAGATTGCACA+TGG + chr6_1:2951986-2952005 Msa0869120:three_prime_UTR 50.0%
! AGTGTGTCTGTGTCGGTGCT+TGG + chr6_1:2948059-2948078 Msa0869120:intron 55.0%
TGATTGGGAGTGGAGGCTGA+AGG + chr6_1:2949008-2949027 Msa0869120:intron 55.0%
! CCCTCTTGCACTGTTGGTAG+TGG + chr6_1:2949321-2949340 Msa0869120:intron 55.0%
GCCACTACCAACAGTGCAAG+AGG - chr6_1:2949325-2949344 None:intergenic 55.0%
!! CTTGCACTGTTGGTAGTGGC+TGG + chr6_1:2949325-2949344 Msa0869120:intron 55.0%
GGAGCTGAACTGAAGGGTTG+TGG + chr6_1:2949394-2949413 Msa0869120:CDS 55.0%
GACTAGAGGGACTCATCTGC+TGG + chr6_1:2950107-2950126 Msa0869120:CDS 55.0%
TGGGAGTGGAGGCTGAAGGT+TGG + chr6_1:2949012-2949031 Msa0869120:intron 60.0%
GGGAGTGGAGGCTGAAGGTT+GGG + chr6_1:2949013-2949032 Msa0869120:intron 60.0%
GTGGAGGCTGAAGGTTGGGA+TGG + chr6_1:2949017-2949036 Msa0869120:intron 60.0%
ACGTCGCCCTCTTGCACTGT+TGG + chr6_1:2949315-2949334 Msa0869120:intron 60.0%
TGTGCGGGTCTGGTGTTTGC+AGG + chr6_1:2949372-2949391 Msa0869120:intron 60.0%
GTGCGGGTCTGGTGTTTGCA+GGG + chr6_1:2949373-2949392 Msa0869120:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 2947219 2952035 2947219 ID=Msa0869120;Name=Msa0869120
chr6_1 mRNA 2947219 2952035 2947219 ID=Msa0869120-mRNA-1;Parent=Msa0869120;Name=Msa0869120-mRNA-1;_AED=0.18;_eAED=0.18;_QI=135|0.5|0.71|0.71|0.83|0.71|7|379|216
chr6_1 exon 2947219 2947531 2947219 ID=Msa0869120-mRNA-1:exon:914;Parent=Msa0869120-mRNA-1
chr6_1 exon 2948387 2948445 2948387 ID=Msa0869120-mRNA-1:exon:915;Parent=Msa0869120-mRNA-1
chr6_1 exon 2949394 2949457 2949394 ID=Msa0869120-mRNA-1:exon:916;Parent=Msa0869120-mRNA-1
chr6_1 exon 2950040 2950161 2950040 ID=Msa0869120-mRNA-1:exon:917;Parent=Msa0869120-mRNA-1
chr6_1 exon 2950532 2950650 2950532 ID=Msa0869120-mRNA-1:exon:918;Parent=Msa0869120-mRNA-1
chr6_1 exon 2951429 2951807 2951429 ID=Msa0869120-mRNA-1:exon:919;Parent=Msa0869120-mRNA-1
chr6_1 exon 2951927 2952035 2951927 ID=Msa0869120-mRNA-1:exon:920;Parent=Msa0869120-mRNA-1
chr6_1 five_prime_UTR 2947219 2947353 2947219 ID=Msa0869120-mRNA-1:five_prime_utr;Parent=Msa0869120-mRNA-1
chr6_1 CDS 2947354 2947531 2947354 ID=Msa0869120-mRNA-1:cds;Parent=Msa0869120-mRNA-1
chr6_1 CDS 2948387 2948445 2948387 ID=Msa0869120-mRNA-1:cds;Parent=Msa0869120-mRNA-1
chr6_1 CDS 2949394 2949457 2949394 ID=Msa0869120-mRNA-1:cds;Parent=Msa0869120-mRNA-1
chr6_1 CDS 2950040 2950161 2950040 ID=Msa0869120-mRNA-1:cds;Parent=Msa0869120-mRNA-1
chr6_1 CDS 2950532 2950650 2950532 ID=Msa0869120-mRNA-1:cds;Parent=Msa0869120-mRNA-1
chr6_1 CDS 2951429 2951537 2951429 ID=Msa0869120-mRNA-1:cds;Parent=Msa0869120-mRNA-1
chr6_1 three_prime_UTR 2951538 2951807 2951538 ID=Msa0869120-mRNA-1:three_prime_utr;Parent=Msa0869120-mRNA-1
chr6_1 three_prime_UTR 2951927 2952035 2951927 ID=Msa0869120-mRNA-1:three_prime_utr;Parent=Msa0869120-mRNA-1
Gene Sequence

>Msa0869120

ATGGGAGAAGAATCAACACGAGTTATGATTGGAGTGAACGAGTCAAGCTTGAAAGGTTATCCACATCCTTCAATCAGTAGCAAAGGCGCTTTCGATTGGACCGTTTCCAAAATCATTCGTAACAATGTTTCTGCTTTTCATCTTCTTTTTCTTCATGTTCAAGTTCCTGATGAAGACGGGCATGTTTGGATTATCTTATTTGAGACTCTTTGTGAGAGCTTACGGAAGCAGTTTATGGGAGCTGAACTGAAGGGTTGTGGGGCTGATTCTGTGCCCATATCAGTACGCGCTCCATTTCTTTGTTACGATGACGTGGATAGTATCTATGCATCGGGTGAAGACTTTAAGAACATGAAACAGCAAGAAAAGACTAGAGGGACTCATCTGCTGGAATACTTCGTCAAGAGGTGTAATGAAATTGGGGTGACCTGTGAAGCATGGATAAAGCAGGGTGATCCCAAAGAAGTGATATTGAATGAGGTGAAACGGGTTCGTCCAGATTTACTAGTTGTTGGAAGCAGAGGTCTTGGACCTTTCCAAAAGGTTTTTGTTGGCACTGTTAGTGAATTTTGTTGGAAGCATGCTGAATGCCCTGTCATGACTATCAAACGCAATGCAGATGAAACTCCAAGGGACCCTGTTGATGACTAG

Protein sequence

>Msa0869120

MGEESTRVMIGVNESSLKGYPHPSISSKGAFDWTVSKIIRNNVSAFHLLFLHVQVPDEDGHVWIILFETLCESLRKQFMGAELKGCGADSVPISVRAPFLCYDDVDSIYASGEDFKNMKQQEKTRGTHLLEYFVKRCNEIGVTCEAWIKQGDPKEVILNEVKRVRPDLLVVGSRGLGPFQKVFVGTVSEFCWKHAECPVMTIKRNADETPRDPVDD*