AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0763020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0763020 MtrunA17_Chr5g0413401 100.000 71 0 0 1 71 1 71 6.25e-50 150
Msa0763020 MtrunA17_Chr4g0038621 97.183 71 2 0 1 71 1 71 3.48e-48 146
Msa0763020 MtrunA17_Chr5g0413391 77.966 59 13 0 13 71 38 96 6.75e-31 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0763020 AT1G61700.1 88.732 71 8 0 1 71 1 71 1.43e-44 137
Msa0763020 AT1G11475.1 89.855 69 7 0 1 69 1 69 1.27e-42 132

Find 39 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCCTTAAGACTCCTTAAT+TGG 0.218662 5_2:+21692386 None:intergenic
AAGGGATAATCAAATCATTT+TGG 0.226726 5_2:-21692072 Msa0763020:three_prime_UTR
AGAGATGCACTGGATGCTTT+GGG 0.274653 5_2:-21692591 Msa0763020:CDS
TGCTTGCTAGAACAATTTAA+AGG 0.276326 5_2:+21692288 None:intergenic
GAAAAGCATGAAGCCAATTA+AGG 0.319569 5_2:-21692399 Msa0763020:exon
TAGAGATGCACTGGATGCTT+TGG 0.336585 5_2:-21692592 Msa0763020:CDS
CAAAATCGTTATTTAGCGTT+TGG 0.346017 5_2:+21695759 None:intergenic
GTTTCTTCTAATTAGGTCAT+TGG 0.370379 5_2:-21695526 Msa0763020:intron
ATTAGGTCATTGGAAACAAA+TGG 0.383611 5_2:-21695516 Msa0763020:intron
AGCACGCAACTGACACATTT+CGG 0.399196 5_2:+21692354 None:intergenic
CTAGAACAATTTAAAGGAAA+AGG 0.409796 5_2:+21692294 None:intergenic
GCATACGCCTGCAGCAATAT+CGG 0.413628 5_2:+21692562 None:intergenic
AATTCAGTAGCTTCTCGATA+AGG 0.428935 5_2:+21692523 None:intergenic
CCGCAGGTGAAACAACGAAC+TGG 0.441163 5_2:+21695686 None:intergenic
AAGCCAATTAAGGAGTCTTA+AGG 0.448688 5_2:-21692389 Msa0763020:exon
CAGAATTTATACTAATGCTT+AGG 0.464414 5_2:-21692175 Msa0763020:three_prime_UTR
GGTTGGTCCGATATTGCTGC+AGG 0.484942 5_2:-21692569 Msa0763020:CDS
CTTCAAGCTGATTACACTGA+AGG 0.490470 5_2:-21695475 Msa0763020:CDS
TGCACTGGATGCTTTGGGGT+TGG 0.493715 5_2:-21692586 Msa0763020:CDS
TTAGGTCATTGGAAACAAAT+GGG 0.513383 5_2:-21695515 Msa0763020:intron
CGCAGGTGAAACAACGAACT+GGG 0.523249 5_2:+21695687 None:intergenic
TTCAAGCTGATTACACTGAA+GGG 0.534819 5_2:-21695474 Msa0763020:intron
AGACAAAACTGTAGAATGAC+AGG 0.542212 5_2:-21692230 Msa0763020:three_prime_UTR
AAGATTAGAAACCTTTCCGC+AGG 0.548491 5_2:+21695670 None:intergenic
AATGTGTGTAGTGATAACTA+AGG 0.554664 5_2:-21692091 Msa0763020:three_prime_UTR
TAAAATTGACATGTGGCCAC+AGG 0.570748 5_2:+21692328 None:intergenic
TGTTAAAACATAACATGCAA+AGG 0.574632 5_2:+21692142 None:intergenic
TCGTTGTTTCACCTGCGGAA+AGG 0.581187 5_2:-21695681 Msa0763020:intron
ATGTGTGTAGTGATAACTAA+GGG 0.584476 5_2:-21692090 Msa0763020:three_prime_UTR
TGACTAACAATATAAACACT+TGG 0.597197 5_2:+21692022 None:intergenic
GAGATGCACTGGATGCTTTG+GGG 0.600948 5_2:-21692590 Msa0763020:CDS
GAAAGGTTTCTACTGTTGTG+CGG 0.601466 5_2:-21695737 Msa0763020:five_prime_UTR
CCAGTTCGTTGTTTCACCTG+CGG 0.606400 5_2:-21695686 Msa0763020:CDS
GCTTCTCGATAAGGTCAACA+TGG 0.614974 5_2:+21692532 None:intergenic
GTAAATAATCCCATAACCAG+AGG 0.642019 5_2:+21692049 None:intergenic
TGTGCGGCGTGAGCAGAGAG+AGG 0.655710 5_2:-21695721 Msa0763020:five_prime_UTR
AATCAGCTTGAAGAAAGTCA+AGG 0.662224 5_2:+21695485 None:intergenic
TCAGTTGCGTGCTAGTCCTG+TGG 0.669432 5_2:-21692344 Msa0763020:three_prime_UTR
CTTCTCGATAAGGTCAACAT+GGG 0.682743 5_2:+21692533 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACAACTTTTTTTTTTT+AGG - chr5_2:21692720-21692739 Msa0763020:intron 10.0%
!! GTATTTATTATTTAACATAA+TGG - chr5_2:21695171-21695190 Msa0763020:intron 10.0%
!!! TTTTAACGATTTTGAAATTT+AGG - chr5_2:21692217-21692236 Msa0763020:three_prime_UTR 15.0%
!!! TTTAACGATTTTGAAATTTA+GGG - chr5_2:21692218-21692237 Msa0763020:three_prime_UTR 15.0%
!! GATAACAAAAAAAAAATTGT+CGG - chr5_2:21693236-21693255 Msa0763020:intron 15.0%
!! ATAACAAAAAAAAAATTGTC+GGG - chr5_2:21693237-21693256 Msa0763020:intron 15.0%
!! GATTTAATTATAGGAATTAT+GGG + chr5_2:21693933-21693952 None:intergenic 15.0%
!! TGATTTAATTATAGGAATTA+TGG + chr5_2:21693934-21693953 None:intergenic 15.0%
!! ACTGTTAATGATTTAATTAT+AGG + chr5_2:21693942-21693961 None:intergenic 15.0%
!! ACAAATTTAGTAAAAGATAA+TGG + chr5_2:21694408-21694427 None:intergenic 15.0%
!!! TATTACAAAATGCAATTTTA+AGG + chr5_2:21694520-21694539 None:intergenic 15.0%
!!! ATCTTTTCTTTAGTTTAATA+TGG - chr5_2:21694737-21694756 Msa0763020:intron 15.0%
!! TTTATTATTTAACATAATGG+TGG - chr5_2:21695174-21695193 Msa0763020:intron 15.0%
!! AAAAATATAAAATTGACATG+TGG + chr5_2:21695479-21695498 None:intergenic 15.0%
!!! ACATGTCAATTTTATATTTT+TGG - chr5_2:21695478-21695497 Msa0763020:CDS 15.0%
!!! CATGTCAATTTTATATTTTT+GGG - chr5_2:21695479-21695498 Msa0763020:CDS 15.0%
!! AAGAGAAAGCAATTAAATTA+GGG + chr5_2:21692355-21692374 None:intergenic 20.0%
!!! TACAACTTTTTTTTTTTAGG+TGG - chr5_2:21692723-21692742 Msa0763020:intron 20.0%
!! TACAAATATCATTTCTCTTA+AGG + chr5_2:21692889-21692908 None:intergenic 20.0%
!! TAAGTCATAAATATAATTGC+TGG - chr5_2:21693141-21693160 Msa0763020:intron 20.0%
!!! CAATTTTTTTTTTGTTATCG+TGG + chr5_2:21693235-21693254 None:intergenic 20.0%
!!! ACAGTTTTAAGATTAAACAA+TGG - chr5_2:21693311-21693330 Msa0763020:intron 20.0%
!!! TTCATTTTGATCTTAAACTA+TGG + chr5_2:21693386-21693405 None:intergenic 20.0%
!! TGTATTTAAAGGTTGTTAAA+AGG + chr5_2:21693835-21693854 None:intergenic 20.0%
!!! TTTTAACAACCTTTAAATAC+AGG - chr5_2:21693834-21693853 Msa0763020:intron 20.0%
!! TATGAATTTCCTGTATTTAA+AGG + chr5_2:21693846-21693865 None:intergenic 20.0%
!! GGAGATTACAAATTTATATT+GGG + chr5_2:21693912-21693931 None:intergenic 20.0%
!! AAAAAAGTTGTGAAACTAAA+GGG + chr5_2:21694377-21694396 None:intergenic 20.0%
!! AAAAAAAGTTGTGAAACTAA+AGG + chr5_2:21694378-21694397 None:intergenic 20.0%
!!! AGTTTCACAACTTTTTTTTT+TGG - chr5_2:21694380-21694399 Msa0763020:intron 20.0%
!!! TCTTTTACTAAATTTGTTTC+CGG - chr5_2:21694411-21694430 Msa0763020:intron 20.0%
!! CTTAAGTTATAGTTGTAATT+TGG - chr5_2:21694664-21694683 Msa0763020:intron 20.0%
!!! GCATTTTTAAGATTAAACAA+TGG - chr5_2:21694944-21694963 Msa0763020:intron 20.0%
!!! TGTAATGGTAACTTTTAAAA+AGG + chr5_2:21695003-21695022 None:intergenic 20.0%
!!! ATGACAGGTTTTTATAAAAA+CGG - chr5_2:21695582-21695601 Msa0763020:intron 20.0%
!!! TTGACTTGTTTCTTCTAATT+AGG - chr5_2:21692264-21692283 Msa0763020:three_prime_UTR 25.0%
! GAAGAGAAAGCAATTAAATT+AGG + chr5_2:21692356-21692375 None:intergenic 25.0%
!!! ATAGCTATTTTCACAGAAAT+AGG + chr5_2:21692378-21692397 None:intergenic 25.0%
!! ATTTGTTACCTATATCTGTT+TGG - chr5_2:21692416-21692435 Msa0763020:intron 25.0%
! ATAAGCACGTAAGATTATTT+GGG + chr5_2:21692656-21692675 None:intergenic 25.0%
! TGTAAAACTAATAACCTGTT+TGG + chr5_2:21692707-21692726 None:intergenic 25.0%
!! TTTTGTACTAAATATGTCTC+TGG - chr5_2:21692751-21692770 Msa0763020:intron 25.0%
!! GATATTTGTACAACCATTTT+GGG + chr5_2:21692983-21693002 None:intergenic 25.0%
!! TGATATTTGTACAACCATTT+TGG + chr5_2:21692984-21693003 None:intergenic 25.0%
! ATTACACAAATGCAATTCTA+AGG + chr5_2:21693016-21693035 None:intergenic 25.0%
!!! TTTGTCTGTTTTGAAATAGT+TGG - chr5_2:21693079-21693098 Msa0763020:intron 25.0%
!!! TTTTTTTTTTGTTATCGTGG+TGG + chr5_2:21693232-21693251 None:intergenic 25.0%
!!! CTGTTCTAAAATCTAACAAT+TGG + chr5_2:21693547-21693566 None:intergenic 25.0%
!!! CAATTGTTAGATTTTAGAAC+AGG - chr5_2:21693545-21693564 Msa0763020:intron 25.0%
! GGGAGATTACAAATTTATAT+TGG + chr5_2:21693913-21693932 None:intergenic 25.0%
! TCATTAACAGTCATAACTAT+AGG - chr5_2:21693951-21693970 Msa0763020:intron 25.0%
! GGAATTCTACAATAATAAAG+AGG - chr5_2:21693972-21693991 Msa0763020:intron 25.0%
! ATCTATTCAGATAAATGAAC+AGG + chr5_2:21694018-21694037 None:intergenic 25.0%
! GCTGAAATAATTATGATACT+TGG - chr5_2:21694049-21694068 Msa0763020:intron 25.0%
! ATTAATGTCTTAAGTGCTTA+TGG - chr5_2:21694116-21694135 Msa0763020:intron 25.0%
! ATAAGTCTATTCTGTTTCAA+TGG - chr5_2:21694452-21694471 Msa0763020:intron 25.0%
!! ATTAACTTATTGAAAGCATG+AGG - chr5_2:21694580-21694599 Msa0763020:intron 25.0%
!! TTAACTTATTGAAAGCATGA+GGG - chr5_2:21694581-21694600 Msa0763020:intron 25.0%
! ATCTCTTCAGAAGTTATTAT+TGG - chr5_2:21694625-21694644 Msa0763020:intron 25.0%
!! TTCATCTCTAAAGGAATATA+AGG - chr5_2:21695037-21695056 Msa0763020:intron 25.0%
! AATCATTGTGTATATACTAC+AGG - chr5_2:21695060-21695079 Msa0763020:intron 25.0%
! ATCATTGTGTATATACTACA+GGG - chr5_2:21695061-21695080 Msa0763020:intron 25.0%
! GTAATGATCATACATTCATT+TGG - chr5_2:21695364-21695383 Msa0763020:intron 25.0%
! CTAGAACAATTTAAAGGAAA+AGG + chr5_2:21695506-21695525 None:intergenic 25.0%
!! TGACAGGTTTTTATAAAAAC+GGG - chr5_2:21695583-21695602 Msa0763020:intron 25.0%
! CAGAATTTATACTAATGCTT+AGG - chr5_2:21695622-21695641 Msa0763020:intron 25.0%
! TGTTAAAACATAACATGCAA+AGG + chr5_2:21695658-21695677 None:intergenic 25.0%
!! AAGGGATAATCAAATCATTT+TGG - chr5_2:21695725-21695744 Msa0763020:five_prime_UTR 25.0%
CAAAATCGTTATTTAGCGTT+TGG + chr5_2:21692041-21692060 None:intergenic 30.0%
! CGCTAAATAACGATTTTGAA+AGG - chr5_2:21692043-21692062 Msa0763020:three_prime_UTR 30.0%
GTTTCTTCTAATTAGGTCAT+TGG - chr5_2:21692271-21692290 Msa0763020:three_prime_UTR 30.0%
ATTAGGTCATTGGAAACAAA+TGG - chr5_2:21692281-21692300 Msa0763020:three_prime_UTR 30.0%
TTAGGTCATTGGAAACAAAT+GGG - chr5_2:21692282-21692301 Msa0763020:three_prime_UTR 30.0%
CTGTATATCCAAACAGATAT+AGG + chr5_2:21692427-21692446 None:intergenic 30.0%
ATATAAGTGCTTATGGCATA+AGG - chr5_2:21692470-21692489 Msa0763020:intron 30.0%
ATTTATCTCCATAAACTCCA+CGG + chr5_2:21692597-21692616 None:intergenic 30.0%
CATAAGCACGTAAGATTATT+TGG + chr5_2:21692657-21692676 None:intergenic 30.0%
AACTAATAACCTGTTTGGAT+TGG + chr5_2:21692702-21692721 None:intergenic 30.0%
AAGCTACTACATAAGGAAAT+TGG + chr5_2:21692811-21692830 None:intergenic 30.0%
ACTAATCAAGCTACTACATA+AGG + chr5_2:21692818-21692837 None:intergenic 30.0%
CATAGAACAACATTGAAAAG+CGG + chr5_2:21692843-21692862 None:intergenic 30.0%
! TGATATTTGTACAGCCATTT+TGG - chr5_2:21692898-21692917 Msa0763020:intron 30.0%
!! GATATTTGTACAGCCATTTT+GGG - chr5_2:21692899-21692918 Msa0763020:intron 30.0%
ACTTCAATATTGCACAACAA+TGG + chr5_2:21693105-21693124 None:intergenic 30.0%
ATATTGAAGTTGTAACCCAT+TGG - chr5_2:21693115-21693134 Msa0763020:intron 30.0%
ATTTATGACTTACGACCAAT+GGG + chr5_2:21693133-21693152 None:intergenic 30.0%
TATTTATGACTTACGACCAA+TGG + chr5_2:21693134-21693153 None:intergenic 30.0%
TGGAGTTAATGATACTGAAA+AGG + chr5_2:21693212-21693231 None:intergenic 30.0%
!!! CTACACCAAGTTTTTTTCTA+CGG + chr5_2:21693263-21693282 None:intergenic 30.0%
!! CTGTTCTAAAATCCAACAAT+TGG - chr5_2:21693451-21693470 Msa0763020:intron 30.0%
TTGGGCTGTTAGAAATTTAT+AGG + chr5_2:21693894-21693913 None:intergenic 30.0%
!! ATTATTGGCTTATAACTCAG+CGG - chr5_2:21694640-21694659 Msa0763020:intron 30.0%
TGCTACATACATTATTTGAG+TGG - chr5_2:21694688-21694707 Msa0763020:intron 30.0%
! CAACTACGAAAAAACTTGTT+TGG - chr5_2:21694880-21694899 Msa0763020:intron 30.0%
AGTTGGGTATAACAATGTAA+TGG + chr5_2:21695018-21695037 None:intergenic 30.0%
! ATTCCTTTAGAGATGAAGTT+GGG + chr5_2:21695034-21695053 None:intergenic 30.0%
! TATTCCTTTAGAGATGAAGT+TGG + chr5_2:21695035-21695054 None:intergenic 30.0%
GTATATACTACAGGGATATT+AGG - chr5_2:21695069-21695088 Msa0763020:intron 30.0%
!! GCATTTTAATGTCATTCTCT+TGG - chr5_2:21695125-21695144 Msa0763020:intron 30.0%
!! GATTAATTTTAGAGATGCAC+TGG - chr5_2:21695196-21695215 Msa0763020:intron 30.0%
! TGTCAATTTTCTATCTCACT+GGG - chr5_2:21695338-21695357 Msa0763020:intron 30.0%
! TGCTTGCTAGAACAATTTAA+AGG + chr5_2:21695512-21695531 None:intergenic 30.0%
AATGTGTGTAGTGATAACTA+AGG - chr5_2:21695706-21695725 Msa0763020:exon 30.0%
ATGTGTGTAGTGATAACTAA+GGG - chr5_2:21695707-21695726 Msa0763020:exon 30.0%
AATCAGCTTGAAGAAAGTCA+AGG + chr5_2:21692315-21692334 None:intergenic 35.0%
TTCAAGCTGATTACACTGAA+GGG - chr5_2:21692323-21692342 Msa0763020:three_prime_UTR 35.0%
TAGCGTCATATAAGTGCTTA+TGG - chr5_2:21692463-21692482 Msa0763020:intron 35.0%
! TGTTTTCATAAGTTATCCCG+TGG - chr5_2:21692577-21692596 Msa0763020:CDS 35.0%
TTTATCTCCATAAACTCCAC+GGG + chr5_2:21692596-21692615 None:intergenic 35.0%
GCTAGTAGTTAATCTCTAAC+AGG - chr5_2:21692676-21692695 Msa0763020:intron 35.0%
TTCTATGAACACATAACCAG+TGG - chr5_2:21692856-21692875 Msa0763020:intron 35.0%
TACTATATGCATTACTCGAG+TGG - chr5_2:21693165-21693184 Msa0763020:intron 35.0%
!! AAAACTTGGTGTAGACTACT+AGG - chr5_2:21693269-21693288 Msa0763020:intron 35.0%
!! CTGTTCTAAAATCCAGCAAT+TGG - chr5_2:21693667-21693686 Msa0763020:intron 35.0%
AGCTTGTATGGAACTATTGA+AGG - chr5_2:21693707-21693726 Msa0763020:intron 35.0%
CTGTTCTAATTTCCATCAAG+TGG + chr5_2:21693763-21693782 None:intergenic 35.0%
TATCGTATTTCCATATCTCC+AGG + chr5_2:21694249-21694268 None:intergenic 35.0%
! ACTAAAGGGCATGTTTGAAT+TGG + chr5_2:21694363-21694382 None:intergenic 35.0%
! AATTTGTTTCCGGCATACTT+TGG - chr5_2:21694421-21694440 Msa0763020:intron 35.0%
! TTTTCATAGCCAAAGTATGC+CGG + chr5_2:21694433-21694452 None:intergenic 35.0%
CTATTCTGTTTCAATGGTTC+TGG - chr5_2:21694458-21694477 Msa0763020:intron 35.0%
! GCATTTTGTAATAGATGTCG+CGG - chr5_2:21694527-21694546 Msa0763020:intron 35.0%
! CTTTTTAGACATGAGAACTG+GGG + chr5_2:21694845-21694864 None:intergenic 35.0%
! GCTTTTTAGACATGAGAACT+GGG + chr5_2:21694846-21694865 None:intergenic 35.0%
! AGCTTTTTAGACATGAGAAC+TGG + chr5_2:21694847-21694866 None:intergenic 35.0%
! CTACGAAAAAACTTGTTTGG+CGG - chr5_2:21694883-21694902 Msa0763020:intron 35.0%
TTGTTTGGCGGTATGAAATT+CGG - chr5_2:21694895-21694914 Msa0763020:intron 35.0%
ATACCCAACTTCATCTCTAA+AGG - chr5_2:21695028-21695047 Msa0763020:intron 35.0%
AATTCAGTAGCTTCTCGATA+AGG + chr5_2:21695277-21695296 None:intergenic 35.0%
! GTGTCAATTTTCTATCTCAC+TGG - chr5_2:21695337-21695356 Msa0763020:intron 35.0%
! GAAAAGCATGAAGCCAATTA+AGG - chr5_2:21695398-21695417 Msa0763020:intron 35.0%
AAGCCAATTAAGGAGTCTTA+AGG - chr5_2:21695408-21695427 Msa0763020:intron 35.0%
GTTCCTTAAGACTCCTTAAT+TGG + chr5_2:21695414-21695433 None:intergenic 35.0%
!!! AAGCAGTTTTAGCTGTGTTT+TGG - chr5_2:21695527-21695546 Msa0763020:intron 35.0%
AGACAAAACTGTAGAATGAC+AGG - chr5_2:21695567-21695586 Msa0763020:intron 35.0%
!! AATCAAATCATTTTGGCCTC+TGG - chr5_2:21695732-21695751 Msa0763020:five_prime_UTR 35.0%
GTAAATAATCCCATAACCAG+AGG + chr5_2:21695751-21695770 None:intergenic 35.0%
GAAAGGTTTCTACTGTTGTG+CGG - chr5_2:21692060-21692079 Msa0763020:three_prime_UTR 40.0%
AAGATTAGAAACCTTTCCGC+AGG + chr5_2:21692130-21692149 None:intergenic 40.0%
CTTCAAGCTGATTACACTGA+AGG - chr5_2:21692322-21692341 Msa0763020:three_prime_UTR 40.0%
AAGTTATCCCGTGGAGTTTA+TGG - chr5_2:21692586-21692605 Msa0763020:CDS 40.0%
TGTCTCTGGCATTCATTCTT+TGG - chr5_2:21692765-21692784 Msa0763020:intron 40.0%
CTCTTAAGGTATACATCCAC+TGG + chr5_2:21692875-21692894 None:intergenic 40.0%
GATAGAGAGTTGTCCCAAAA+TGG + chr5_2:21692915-21692934 None:intergenic 40.0%
TTCTTCTTCCCTCTTCTTTC+GGG + chr5_2:21692954-21692973 None:intergenic 40.0%
CTTCTTCTTCCCTCTTCTTT+CGG + chr5_2:21692955-21692974 None:intergenic 40.0%
AGAAGAAGGTTGTCCCAAAA+TGG - chr5_2:21692967-21692986 Msa0763020:intron 40.0%
GAAGCTGTGATACCAATTGT+TGG + chr5_2:21693466-21693485 None:intergenic 40.0%
AGCTTGTAAGGCATGATTGA+AGG - chr5_2:21693491-21693510 Msa0763020:intron 40.0%
!! CAGCTTCAGTTTAGCTTGTA+TGG - chr5_2:21693695-21693714 Msa0763020:intron 40.0%
ATCAAGTGGTATCAGAGCTT+CGG + chr5_2:21693749-21693768 None:intergenic 40.0%
TCTGTTTCCACAAACTAACC+TGG - chr5_2:21694228-21694247 Msa0763020:intron 40.0%
!! CATATCTCCAGGTTAGTTTG+TGG + chr5_2:21694238-21694257 None:intergenic 40.0%
CACAAACTAACCTGGAGATA+TGG - chr5_2:21694236-21694255 Msa0763020:intron 40.0%
AAGCACTTGTGAGACTGTTT+GGG + chr5_2:21694315-21694334 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG + chr5_2:21694316-21694335 None:intergenic 40.0%
CTTCTCGATAAGGTCAACAT+GGG + chr5_2:21695267-21695286 None:intergenic 40.0%
CATTCATTTGGTTGCAGCTA+TGG - chr5_2:21695376-21695395 Msa0763020:intron 40.0%
TAAAATTGACATGTGGCCAC+AGG + chr5_2:21695472-21695491 None:intergenic 40.0%
!! ATCATTTTGGCCTCTGGTTA+TGG - chr5_2:21695738-21695757 Msa0763020:five_prime_UTR 40.0%
!! TCATTTTGGCCTCTGGTTAT+GGG - chr5_2:21695739-21695758 Msa0763020:five_prime_UTR 40.0%
TCTAACAGGCCAATCCAAAC+AGG - chr5_2:21692690-21692709 Msa0763020:intron 45.0%
! TGTTTCTGTCCCGAAAGAAG+AGG - chr5_2:21692942-21692961 Msa0763020:intron 45.0%
GTTTCTGTCCCGAAAGAAGA+GGG - chr5_2:21692943-21692962 Msa0763020:intron 45.0%
CGAAAGAAGAGGGAAGAAGA+AGG - chr5_2:21692953-21692972 Msa0763020:intron 45.0%
TCGGGCCGTAGAAAAAAACT+TGG - chr5_2:21693255-21693274 Msa0763020:intron 45.0%
CAGCTTCAGTTGAGCTTGTA+AGG - chr5_2:21693479-21693498 Msa0763020:intron 45.0%
GAAGCTGTGATACCAATTGC+TGG + chr5_2:21693682-21693701 None:intergenic 45.0%
GAGCTTCGGTTAAGCTTGTA+AGG + chr5_2:21693735-21693754 None:intergenic 45.0%
! GAAGCTCTGATACCACTTGA+TGG - chr5_2:21693748-21693767 Msa0763020:intron 45.0%
CTCACAAGTGCTTATGTCAG+TGG - chr5_2:21694322-21694341 Msa0763020:intron 45.0%
TTAGACATGAGAACTGGGGA+AGG + chr5_2:21694841-21694860 None:intergenic 45.0%
TGGCGGTATGAAATTCGGAT+CGG - chr5_2:21694900-21694919 Msa0763020:intron 45.0%
ATGAAATTCGGATCGGATGC+AGG - chr5_2:21694907-21694926 Msa0763020:intron 45.0%
TGAAATTCGGATCGGATGCA+GGG - chr5_2:21694908-21694927 Msa0763020:intron 45.0%
TAGAGATGCACTGGATGCTT+TGG - chr5_2:21695205-21695224 Msa0763020:intron 45.0%
AGAGATGCACTGGATGCTTT+GGG - chr5_2:21695206-21695225 Msa0763020:intron 45.0%
GCTTCTCGATAAGGTCAACA+TGG + chr5_2:21695268-21695287 None:intergenic 45.0%
AGCACGCAACTGACACATTT+CGG + chr5_2:21695446-21695465 None:intergenic 45.0%
CGCAGGTGAAACAACGAACT+GGG + chr5_2:21692113-21692132 None:intergenic 50.0%
! CCAGTTCGTTGTTTCACCTG+CGG - chr5_2:21692111-21692130 Msa0763020:three_prime_UTR 50.0%
! TCGTTGTTTCACCTGCGGAA+AGG - chr5_2:21692116-21692135 Msa0763020:three_prime_UTR 50.0%
GAGATGCACTGGATGCTTTG+GGG - chr5_2:21695207-21695226 Msa0763020:intron 50.0%
GCATACGCCTGCAGCAATAT+CGG + chr5_2:21695238-21695257 None:intergenic 50.0%
CCGCAGGTGAAACAACGAAC+TGG + chr5_2:21692114-21692133 None:intergenic 55.0%
!! TGCACTGGATGCTTTGGGGT+TGG - chr5_2:21695211-21695230 Msa0763020:intron 55.0%
! GGTTGGTCCGATATTGCTGC+AGG - chr5_2:21695228-21695247 Msa0763020:intron 55.0%
TCAGTTGCGTGCTAGTCCTG+TGG - chr5_2:21695453-21695472 Msa0763020:intron 55.0%
GAGAACTGGGGAAGGACGCT+AGG + chr5_2:21694833-21694852 None:intergenic 60.0%
TGTGCGGCGTGAGCAGAGAG+AGG - chr5_2:21692076-21692095 Msa0763020:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 21692035 21695784 21692035 ID=Msa0763020;Name=Msa0763020
chr5_2 mRNA 21692035 21695784 21692035 ID=Msa0763020-mRNA-1;Parent=Msa0763020;Name=Msa0763020-mRNA-1;_AED=0.20;_eAED=0.20;_QI=67|1|1|1|0|0|4|366|71
chr5_2 exon 21692035 21692426 21692035 ID=Msa0763020-mRNA-1:exon:9042;Parent=Msa0763020-mRNA-1
chr5_2 exon 21692517 21692611 21692517 ID=Msa0763020-mRNA-1:exon:9041;Parent=Msa0763020-mRNA-1
chr5_2 exon 21695475 21695533 21695475 ID=Msa0763020-mRNA-1:exon:9040;Parent=Msa0763020-mRNA-1
chr5_2 exon 21695682 21695784 21695682 ID=Msa0763020-mRNA-1:exon:9039;Parent=Msa0763020-mRNA-1
chr5_2 five_prime_UTR 21695718 21695784 21695718 ID=Msa0763020-mRNA-1:five_prime_utr;Parent=Msa0763020-mRNA-1
chr5_2 CDS 21695682 21695717 21695682 ID=Msa0763020-mRNA-1:cds;Parent=Msa0763020-mRNA-1
chr5_2 CDS 21695475 21695533 21695475 ID=Msa0763020-mRNA-1:cds;Parent=Msa0763020-mRNA-1
chr5_2 CDS 21692517 21692611 21692517 ID=Msa0763020-mRNA-1:cds;Parent=Msa0763020-mRNA-1
chr5_2 CDS 21692401 21692426 21692401 ID=Msa0763020-mRNA-1:cds;Parent=Msa0763020-mRNA-1
chr5_2 three_prime_UTR 21692035 21692400 21692035 ID=Msa0763020-mRNA-1:three_prime_utr;Parent=Msa0763020-mRNA-1
Gene Sequence

>Msa0763020

ATGATTATCCCAGTTCGTTGTTTCACCTGCGGAAAGGTCATTGGAAACAAATGGGATTCTTACCTTGACTTTCTTCAAGCTGATTACACTGAAGGAGATGCACTGGATGCTTTGGGGTTGGTCCGATATTGCTGCAGGCGTATGCTTATGACCCATGTTGACCTTATCGAGAAGCTACTGAATTACAATACTATGGAAAAGCATGAAGCCAATTAA

Protein sequence

>Msa0763020

MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKHEAN*