AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0722020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0722020 MtrunA17_Chr5g0413401 100.000 71 0 0 1 71 1 71 6.25e-50 150
Msa0722020 MtrunA17_Chr4g0038621 97.183 71 2 0 1 71 1 71 3.48e-48 146
Msa0722020 MtrunA17_Chr5g0413391 77.966 59 13 0 13 71 38 96 6.75e-31 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0722020 AT1G61700.1 88.732 71 8 0 1 71 1 71 1.43e-44 137
Msa0722020 AT1G11475.1 89.855 69 7 0 1 69 1 69 1.27e-42 132

Find 39 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCCTTAAGACTCCTTAAT+TGG 0.218662 5_1:+19154863 None:intergenic
AAGGGATAATCAAATCATTT+TGG 0.226726 5_1:-19154549 Msa0722020:three_prime_UTR
AGAGATGCACTGGATGCTTT+GGG 0.274653 5_1:-19155068 Msa0722020:CDS
TGCTTGCTAGAACAATTTAA+AGG 0.276326 5_1:+19154765 None:intergenic
GAAAAGCATGAAGCCAATTA+AGG 0.319569 5_1:-19154876 Msa0722020:exon
TAGAGATGCACTGGATGCTT+TGG 0.336585 5_1:-19155069 Msa0722020:CDS
CAAAATCGTTATTTAGCGTT+TGG 0.346017 5_1:+19158246 None:intergenic
GTTTCTTCTAATTAGGTCAT+TGG 0.370379 5_1:-19158008 Msa0722020:intron
ATTAGGTCATTGGAAACAAA+TGG 0.383611 5_1:-19157998 Msa0722020:intron
AGCACGCAACTGACACATTT+CGG 0.399196 5_1:+19154831 None:intergenic
CTAGAACAATTTAAAGGAAA+AGG 0.409796 5_1:+19154771 None:intergenic
GCATACGCCTGCAGCAATAT+CGG 0.413628 5_1:+19155039 None:intergenic
AATTCAGTAGCTTCTCGATA+AGG 0.428935 5_1:+19155000 None:intergenic
CCGCAGGTGAAACAACGAAC+TGG 0.441163 5_1:+19158173 None:intergenic
AAGCCAATTAAGGAGTCTTA+AGG 0.448688 5_1:-19154866 Msa0722020:exon
CAGAATTTATACTAATGCTT+AGG 0.464414 5_1:-19154652 Msa0722020:three_prime_UTR
GGTTGGTCCGATATTGCTGC+AGG 0.484942 5_1:-19155046 Msa0722020:CDS
CTTCAAGCTGATTACACTGA+AGG 0.490470 5_1:-19157957 Msa0722020:CDS
TGCACTGGATGCTTTGGGGT+TGG 0.493715 5_1:-19155063 Msa0722020:CDS
TTAGGTCATTGGAAACAAAT+GGG 0.513383 5_1:-19157997 Msa0722020:intron
CGCAGGTGAAACAACGAACT+GGG 0.523249 5_1:+19158174 None:intergenic
TTCAAGCTGATTACACTGAA+GGG 0.534819 5_1:-19157956 Msa0722020:intron
AGACAAAACTGTAGAATGAC+AGG 0.542212 5_1:-19154707 Msa0722020:three_prime_UTR
AAGATTAGAAACCTTTCCGC+AGG 0.548491 5_1:+19158157 None:intergenic
AATGTGTGTAGTGATAACTA+AGG 0.554664 5_1:-19154568 Msa0722020:three_prime_UTR
TAAAATTGACATGTGGCCAC+AGG 0.570748 5_1:+19154805 None:intergenic
TGTTAAAACATAACATGCAA+AGG 0.574632 5_1:+19154619 None:intergenic
TCGTTGTTTCACCTGCGGAA+AGG 0.581187 5_1:-19158168 Msa0722020:intron
ATGTGTGTAGTGATAACTAA+GGG 0.584476 5_1:-19154567 Msa0722020:three_prime_UTR
TGACTAACAATATAAACACT+TGG 0.597197 5_1:+19154499 None:intergenic
GAGATGCACTGGATGCTTTG+GGG 0.600948 5_1:-19155067 Msa0722020:CDS
CCAGTTCGTTGTTTCACCTG+CGG 0.606400 5_1:-19158173 Msa0722020:CDS
GCTTCTCGATAAGGTCAACA+TGG 0.614974 5_1:+19155009 None:intergenic
GTAAATAATCCCATAACCAG+AGG 0.642019 5_1:+19154526 None:intergenic
AAGGTTTCTACTGTTGTGCG+CGG 0.659133 5_1:-19158222 Msa0722020:five_prime_UTR
AATCAGCTTGAAGAAAGTCA+AGG 0.662224 5_1:+19157967 None:intergenic
TCAGTTGCGTGCTAGTCCTG+TGG 0.669432 5_1:-19154821 Msa0722020:three_prime_UTR
TGTGCGCGGCGTGAGCAGAG+AGG 0.679869 5_1:-19158208 Msa0722020:five_prime_UTR
CTTCTCGATAAGGTCAACAT+GGG 0.682743 5_1:+19155010 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTTATTATTTAACATAA+TGG - chr5_1:19157658-19157677 Msa0722020:intron 10.0%
!!! TTTTAACGATTTTGAAATTT+AGG - chr5_1:19154699-19154718 Msa0722020:three_prime_UTR 15.0%
!!! TTTAACGATTTTGAAATTTA+GGG - chr5_1:19154700-19154719 Msa0722020:three_prime_UTR 15.0%
!!! GTTTTACAACTTTTTTTTTT+AGG - chr5_1:19155218-19155237 Msa0722020:intron 15.0%
!! ACAAATTTAGTAAAAGATAA+TGG + chr5_1:19156895-19156914 None:intergenic 15.0%
!!! TATTACAAAATGCAATTTTA+AGG + chr5_1:19157007-19157026 None:intergenic 15.0%
!! TTGTTTATTAACTTATTGAA+AGG - chr5_1:19157061-19157080 Msa0722020:intron 15.0%
!!! ATCTTTTCTTTAGTTTAATA+TGG - chr5_1:19157224-19157243 Msa0722020:intron 15.0%
!! TTTATTATTTAACATAATGG+TGG - chr5_1:19157661-19157680 Msa0722020:intron 15.0%
!! AAAAATATAAAATTGACATG+TGG + chr5_1:19157966-19157985 None:intergenic 15.0%
!!! ACATGTCAATTTTATATTTT+TGG - chr5_1:19157965-19157984 Msa0722020:CDS 15.0%
!!! CATGTCAATTTTATATTTTT+GGG - chr5_1:19157966-19157985 Msa0722020:CDS 15.0%
!! AAGAGAAAGCAATTAAATTA+GGG + chr5_1:19154837-19154856 None:intergenic 20.0%
!!! TTACAACTTTTTTTTTTAGG+TGG - chr5_1:19155221-19155240 Msa0722020:intron 20.0%
!! TACAAATATCATTTCTCTTA+AGG + chr5_1:19155387-19155406 None:intergenic 20.0%
!! TAAGTCATAAATATAATTGC+TGG - chr5_1:19155639-19155658 Msa0722020:intron 20.0%
!!! ACAATTTTTTTTTGTTATCG+TGG + chr5_1:19155733-19155752 None:intergenic 20.0%
!! CGATAACAAAAAAAAATTGT+CGG - chr5_1:19155733-19155752 Msa0722020:intron 20.0%
!! GATAACAAAAAAAAATTGTC+GGG - chr5_1:19155734-19155753 Msa0722020:intron 20.0%
!!! ACAGTTTTAAGATTAAACAA+TGG - chr5_1:19155808-19155827 Msa0722020:intron 20.0%
!!! TTCATTTTGATCTTAAACTA+TGG + chr5_1:19155883-19155902 None:intergenic 20.0%
!! TATGAATTTCCTGTATTTAA+AGG + chr5_1:19156343-19156362 None:intergenic 20.0%
!! GGAGATTACAAATTTATATT+GGG + chr5_1:19156409-19156428 None:intergenic 20.0%
!! AAAAAAGTTGTGAAACTAAA+GGG + chr5_1:19156865-19156884 None:intergenic 20.0%
!! AAAAAAAGTTGTGAAACTAA+AGG + chr5_1:19156866-19156885 None:intergenic 20.0%
!!! TAGTTTCACAACTTTTTTTT+TGG - chr5_1:19156867-19156886 Msa0722020:intron 20.0%
!!! TCTTTTACTAAATTTGTTTC+CGG - chr5_1:19156898-19156917 Msa0722020:intron 20.0%
!! CTTAAGTTATAGTTGTAATT+TGG - chr5_1:19157151-19157170 Msa0722020:intron 20.0%
!!! GCTTTTTTAAGATTAAACAA+TGG - chr5_1:19157431-19157450 Msa0722020:intron 20.0%
!!! TGTAATGGTAACTTTTAAAA+AGG + chr5_1:19157490-19157509 None:intergenic 20.0%
!!! ATGACAGGTTTTTATAAAAA+CGG - chr5_1:19158069-19158088 Msa0722020:intron 20.0%
!!! TTGACTTGTTTCTTCTAATT+AGG - chr5_1:19154746-19154765 Msa0722020:three_prime_UTR 25.0%
! GAAGAGAAAGCAATTAAATT+AGG + chr5_1:19154838-19154857 None:intergenic 25.0%
!!! ATAGCTATTTTCACAGAAAT+AGG + chr5_1:19154860-19154879 None:intergenic 25.0%
!! ATTTGTTACCTATATCTGTT+TGG - chr5_1:19154898-19154917 Msa0722020:intron 25.0%
! ATAAGCACGTAAGATTATTT+GGG + chr5_1:19155155-19155174 None:intergenic 25.0%
! TGTAAAACTAATAACCTGTT+TGG + chr5_1:19155206-19155225 None:intergenic 25.0%
!! TTTTGTACTAAATATGTCTC+TGG - chr5_1:19155249-19155268 Msa0722020:intron 25.0%
!! GATATTTGTACAACCATTTT+GGG + chr5_1:19155481-19155500 None:intergenic 25.0%
!! TGATATTTGTACAACCATTT+TGG + chr5_1:19155482-19155501 None:intergenic 25.0%
! ATTACACAAATGCAATTCTA+AGG + chr5_1:19155514-19155533 None:intergenic 25.0%
!!! TTTGTCTGTTTTGAAATAGT+CGG - chr5_1:19155577-19155596 Msa0722020:intron 25.0%
! TGAAGTTAATGATACTGAAA+AGG + chr5_1:19155710-19155729 None:intergenic 25.0%
!!! CTGTTCTAAAATCTAACAAT+TGG + chr5_1:19156044-19156063 None:intergenic 25.0%
!!! CAATTGTTAGATTTTAGAAC+AGG - chr5_1:19156042-19156061 Msa0722020:intron 25.0%
! TGTATTTAAAGGTTGTTAGA+AGG + chr5_1:19156332-19156351 None:intergenic 25.0%
! TTCTAACAACCTTTAAATAC+AGG - chr5_1:19156331-19156350 Msa0722020:intron 25.0%
! GGGAGATTACAAATTTATAT+TGG + chr5_1:19156410-19156429 None:intergenic 25.0%
! TATAGTTATGACTGTTAATG+AGG + chr5_1:19156439-19156458 None:intergenic 25.0%
! TCATTAACAGTCATAACTAT+AGG - chr5_1:19156438-19156457 Msa0722020:intron 25.0%
! GGAATTCTACAATAATAAAG+AGG - chr5_1:19156459-19156478 Msa0722020:intron 25.0%
! ATCTATTCAGATAAATGAAC+AGG + chr5_1:19156505-19156524 None:intergenic 25.0%
! GCTGAAATAATTATGATACT+TGG - chr5_1:19156537-19156556 Msa0722020:intron 25.0%
! ATTAATGTCTTAAGTGCTTA+TGG - chr5_1:19156604-19156623 Msa0722020:intron 25.0%
! ATAAGTCTATTCTGTTTCAA+TGG - chr5_1:19156939-19156958 Msa0722020:intron 25.0%
! ATTAACTTATTGAAAGGATG+AGG - chr5_1:19157067-19157086 Msa0722020:intron 25.0%
! TTAACTTATTGAAAGGATGA+GGG - chr5_1:19157068-19157087 Msa0722020:intron 25.0%
! ATCTCTTCAGAAGTTATTAT+TGG - chr5_1:19157112-19157131 Msa0722020:intron 25.0%
!! TTCATCTCTAAAGGAATATA+AGG - chr5_1:19157524-19157543 Msa0722020:intron 25.0%
! AATCATTGTGTATATACTAC+AGG - chr5_1:19157547-19157566 Msa0722020:intron 25.0%
! ATCATTGTGTATATACTACA+GGG - chr5_1:19157548-19157567 Msa0722020:intron 25.0%
! GTAATGATCATACATTCATT+TGG - chr5_1:19157851-19157870 Msa0722020:intron 25.0%
! CTAGAACAATTTAAAGGAAA+AGG + chr5_1:19157993-19158012 None:intergenic 25.0%
!! TGACAGGTTTTTATAAAAAC+GGG - chr5_1:19158070-19158089 Msa0722020:intron 25.0%
! CAGAATTTATACTAATGCTT+AGG - chr5_1:19158109-19158128 Msa0722020:intron 25.0%
! TGTTAAAACATAACATGCAA+AGG + chr5_1:19158145-19158164 None:intergenic 25.0%
!! AAGGGATAATCAAATCATTT+TGG - chr5_1:19158212-19158231 Msa0722020:five_prime_UTR 25.0%
CAAAATCGTTATTTAGCGTT+TGG + chr5_1:19154518-19154537 None:intergenic 30.0%
! CGCTAAATAACGATTTTGAA+AGG - chr5_1:19154520-19154539 Msa0722020:three_prime_UTR 30.0%
GTTTCTTCTAATTAGGTCAT+TGG - chr5_1:19154753-19154772 Msa0722020:three_prime_UTR 30.0%
ATTAGGTCATTGGAAACAAA+TGG - chr5_1:19154763-19154782 Msa0722020:three_prime_UTR 30.0%
TTAGGTCATTGGAAACAAAT+GGG - chr5_1:19154764-19154783 Msa0722020:three_prime_UTR 30.0%
CTGTATATCCAAACAGATAT+AGG + chr5_1:19154909-19154928 None:intergenic 30.0%
TTATGGCATATAAGTGCTTA+TGG - chr5_1:19154962-19154981 Msa0722020:intron 30.0%
ATATAAGTGCTTATGGCATA+AGG - chr5_1:19154952-19154971 Msa0722020:intron 30.0%
ATTTATCTCCATAAACTCCA+CGG + chr5_1:19155096-19155115 None:intergenic 30.0%
CATAAGCACGTAAGATTATT+TGG + chr5_1:19155156-19155175 None:intergenic 30.0%
AACTAATAACCTGTTTGGAT+TGG + chr5_1:19155201-19155220 None:intergenic 30.0%
AAGCTACTACATAAGGAAAT+TGG + chr5_1:19155309-19155328 None:intergenic 30.0%
ACTAATCAAGCTACTACATA+AGG + chr5_1:19155316-19155335 None:intergenic 30.0%
CATAGAACAACATTGAAAAG+CGG + chr5_1:19155341-19155360 None:intergenic 30.0%
! TGATATTTGTACAGCCATTT+TGG - chr5_1:19155396-19155415 Msa0722020:intron 30.0%
!! GATATTTGTACAGCCATTTT+GGG - chr5_1:19155397-19155416 Msa0722020:intron 30.0%
ACTTCAATATTGCACAACAA+TGG + chr5_1:19155603-19155622 None:intergenic 30.0%
ATATTGAAGTTGTAACCCAT+TGG - chr5_1:19155613-19155632 Msa0722020:intron 30.0%
ATTTATGACTTACGACCAAT+GGG + chr5_1:19155631-19155650 None:intergenic 30.0%
TATTTATGACTTACGACCAA+TGG + chr5_1:19155632-19155651 None:intergenic 30.0%
!!! CTACACCAAGTTTTTTTCTA+CGG + chr5_1:19155760-19155779 None:intergenic 30.0%
!! CTGTTCTAAAATCCAACAAT+TGG - chr5_1:19155948-19155967 Msa0722020:intron 30.0%
TTGGGCTGTTAGAAATTTAT+AGG + chr5_1:19156391-19156410 None:intergenic 30.0%
GACTGTTAATGAGGAATTAT+GGG + chr5_1:19156430-19156449 None:intergenic 30.0%
TGACTGTTAATGAGGAATTA+TGG + chr5_1:19156431-19156450 None:intergenic 30.0%
!! ATTATTGGCTTATAACTCAG+CGG - chr5_1:19157127-19157146 Msa0722020:intron 30.0%
TGCTACATACATTATTTGAG+TGG - chr5_1:19157175-19157194 Msa0722020:intron 30.0%
! CAACTACGAAAAAACTTGTT+TGG - chr5_1:19157367-19157386 Msa0722020:intron 30.0%
AGTTGGGTATAACAATGTAA+TGG + chr5_1:19157505-19157524 None:intergenic 30.0%
! ATTCCTTTAGAGATGAAGTT+GGG + chr5_1:19157521-19157540 None:intergenic 30.0%
! TATTCCTTTAGAGATGAAGT+TGG + chr5_1:19157522-19157541 None:intergenic 30.0%
GTATATACTACAGGGATATT+AGG - chr5_1:19157556-19157575 Msa0722020:intron 30.0%
!! GCATTTTAATGTCATTCTCT+TGG - chr5_1:19157612-19157631 Msa0722020:intron 30.0%
!! GATTAATTTTAGAGATGCAC+TGG - chr5_1:19157683-19157702 Msa0722020:intron 30.0%
! TGTCAATTTTCTATCTCACT+GGG - chr5_1:19157825-19157844 Msa0722020:intron 30.0%
! TGCTTGCTAGAACAATTTAA+AGG + chr5_1:19157999-19158018 None:intergenic 30.0%
AATGTGTGTAGTGATAACTA+AGG - chr5_1:19158193-19158212 Msa0722020:exon 30.0%
ATGTGTGTAGTGATAACTAA+GGG - chr5_1:19158194-19158213 Msa0722020:exon 30.0%
AATCAGCTTGAAGAAAGTCA+AGG + chr5_1:19154797-19154816 None:intergenic 35.0%
TTCAAGCTGATTACACTGAA+GGG - chr5_1:19154805-19154824 Msa0722020:three_prime_UTR 35.0%
TAGCGTCATATAAGTGCTTA+TGG - chr5_1:19154945-19154964 Msa0722020:intron 35.0%
! TGTTTTCATAAGTTATCCCG+TGG - chr5_1:19155076-19155095 Msa0722020:intron 35.0%
TTTATCTCCATAAACTCCAC+GGG + chr5_1:19155095-19155114 None:intergenic 35.0%
GCTAGTAGTTAATCTCTAAC+AGG - chr5_1:19155175-19155194 Msa0722020:intron 35.0%
TTCTATGAACACATAACCAG+TGG - chr5_1:19155354-19155373 Msa0722020:intron 35.0%
TACTATATGCATTACTCGAG+TGG - chr5_1:19155663-19155682 Msa0722020:intron 35.0%
!! AAAACTTGGTGTAGACTACT+AGG - chr5_1:19155766-19155785 Msa0722020:intron 35.0%
!! CTGTTCTAAAATCCAGCAAT+TGG - chr5_1:19156164-19156183 Msa0722020:intron 35.0%
AGCTTGTATGGAACTATTGA+AGG - chr5_1:19156204-19156223 Msa0722020:intron 35.0%
CTGTTCTAATTTCCATCAAG+TGG + chr5_1:19156260-19156279 None:intergenic 35.0%
TATCGTATTTCCATATCTCC+AGG + chr5_1:19156737-19156756 None:intergenic 35.0%
! ACTAAAGGGCATGTTTGAAT+TGG + chr5_1:19156851-19156870 None:intergenic 35.0%
! AATTTGTTTCCGGCATACTT+TGG - chr5_1:19156908-19156927 Msa0722020:intron 35.0%
! TTTTCATAGCCAAAGTATGC+CGG + chr5_1:19156920-19156939 None:intergenic 35.0%
CTATTCTGTTTCAATGGTTC+TGG - chr5_1:19156945-19156964 Msa0722020:intron 35.0%
! GCATTTTGTAATAGATGTCG+CGG - chr5_1:19157014-19157033 Msa0722020:intron 35.0%
! CTTTTTAGACATGAGAACTG+GGG + chr5_1:19157332-19157351 None:intergenic 35.0%
! GCTTTTTAGACATGAGAACT+GGG + chr5_1:19157333-19157352 None:intergenic 35.0%
! AGCTTTTTAGACATGAGAAC+TGG + chr5_1:19157334-19157353 None:intergenic 35.0%
! CTACGAAAAAACTTGTTTGG+CGG - chr5_1:19157370-19157389 Msa0722020:intron 35.0%
TTGTTTGGCGGTATGAAATT+CGG - chr5_1:19157382-19157401 Msa0722020:intron 35.0%
ATACCCAACTTCATCTCTAA+AGG - chr5_1:19157515-19157534 Msa0722020:intron 35.0%
AATTCAGTAGCTTCTCGATA+AGG + chr5_1:19157764-19157783 None:intergenic 35.0%
! GTGTCAATTTTCTATCTCAC+TGG - chr5_1:19157824-19157843 Msa0722020:intron 35.0%
! GAAAAGCATGAAGCCAATTA+AGG - chr5_1:19157885-19157904 Msa0722020:intron 35.0%
AAGCCAATTAAGGAGTCTTA+AGG - chr5_1:19157895-19157914 Msa0722020:intron 35.0%
GTTCCTTAAGACTCCTTAAT+TGG + chr5_1:19157901-19157920 None:intergenic 35.0%
!!! AAGCAGTTTTAGCTGTGTTT+TGG - chr5_1:19158014-19158033 Msa0722020:intron 35.0%
AGACAAAACTGTAGAATGAC+AGG - chr5_1:19158054-19158073 Msa0722020:intron 35.0%
!! AATCAAATCATTTTGGCCTC+TGG - chr5_1:19158219-19158238 Msa0722020:five_prime_UTR 35.0%
GTAAATAATCCCATAACCAG+AGG + chr5_1:19158238-19158257 None:intergenic 35.0%
AAGATTAGAAACCTTTCCGC+AGG + chr5_1:19154607-19154626 None:intergenic 40.0%
CTTCAAGCTGATTACACTGA+AGG - chr5_1:19154804-19154823 Msa0722020:three_prime_UTR 40.0%
AAGTTATCCCGTGGAGTTTA+TGG - chr5_1:19155085-19155104 Msa0722020:intron 40.0%
TGTCTCTGGCATTCATTCTT+TGG - chr5_1:19155263-19155282 Msa0722020:intron 40.0%
CTCTTAAGGTATACATCCAC+TGG + chr5_1:19155373-19155392 None:intergenic 40.0%
GATAGAGAGTTGTCCCAAAA+TGG + chr5_1:19155413-19155432 None:intergenic 40.0%
TTCTTCTTCCCTCTTCTTTC+GGG + chr5_1:19155452-19155471 None:intergenic 40.0%
CTTCTTCTTCCCTCTTCTTT+CGG + chr5_1:19155453-19155472 None:intergenic 40.0%
AGAAGAAGGTTGTCCCAAAA+TGG - chr5_1:19155465-19155484 Msa0722020:intron 40.0%
GAAGCTGTGATACCAATTGT+TGG + chr5_1:19155963-19155982 None:intergenic 40.0%
AGCTTGTAAGGCATGATTGA+AGG - chr5_1:19155988-19156007 Msa0722020:intron 40.0%
!! CAGCTTCAGTTTAGCTTGTA+TGG - chr5_1:19156192-19156211 Msa0722020:intron 40.0%
ATCAAGTGGTATCAGAGCTT+CGG + chr5_1:19156246-19156265 None:intergenic 40.0%
TCTGTTTCCACAAACTAACC+TGG - chr5_1:19156716-19156735 Msa0722020:intron 40.0%
!! CATATCTCCAGGTTAGTTTG+TGG + chr5_1:19156726-19156745 None:intergenic 40.0%
CACAAACTAACCTGGAGATA+TGG - chr5_1:19156724-19156743 Msa0722020:intron 40.0%
AAGCACTTGTGAGACTGTTT+GGG + chr5_1:19156803-19156822 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG + chr5_1:19156804-19156823 None:intergenic 40.0%
CTTCTCGATAAGGTCAACAT+GGG + chr5_1:19157754-19157773 None:intergenic 40.0%
CATTCATTTGGTTGCAGCTA+TGG - chr5_1:19157863-19157882 Msa0722020:intron 40.0%
TAAAATTGACATGTGGCCAC+AGG + chr5_1:19157959-19157978 None:intergenic 40.0%
!! ATCATTTTGGCCTCTGGTTA+TGG - chr5_1:19158225-19158244 Msa0722020:five_prime_UTR 40.0%
!! TCATTTTGGCCTCTGGTTAT+GGG - chr5_1:19158226-19158245 Msa0722020:five_prime_UTR 40.0%
AAGGTTTCTACTGTTGTGCG+CGG - chr5_1:19154539-19154558 Msa0722020:three_prime_UTR 45.0%
TCTAACAGGCCAATCCAAAC+AGG - chr5_1:19155189-19155208 Msa0722020:intron 45.0%
! TGTTTCTGTCCCGAAAGAAG+AGG - chr5_1:19155440-19155459 Msa0722020:intron 45.0%
GTTTCTGTCCCGAAAGAAGA+GGG - chr5_1:19155441-19155460 Msa0722020:intron 45.0%
CGAAAGAAGAGGGAAGAAGA+AGG - chr5_1:19155451-19155470 Msa0722020:intron 45.0%
TCGGGCCGTAGAAAAAAACT+TGG - chr5_1:19155752-19155771 Msa0722020:intron 45.0%
CAGCTTCAGTTGAGCTTGTA+AGG - chr5_1:19155976-19155995 Msa0722020:intron 45.0%
GAAGCTGTGATACCAATTGC+TGG + chr5_1:19156179-19156198 None:intergenic 45.0%
GAGCTTCGGTTAAGCTTGTA+AGG + chr5_1:19156232-19156251 None:intergenic 45.0%
! GAAGCTCTGATACCACTTGA+TGG - chr5_1:19156245-19156264 Msa0722020:intron 45.0%
CTCACAAGTGCTTATGTCAG+TGG - chr5_1:19156810-19156829 Msa0722020:intron 45.0%
TTAGACATGAGAACTGGGGA+AGG + chr5_1:19157328-19157347 None:intergenic 45.0%
TGGCGGTATGAAATTCGGAT+CGG - chr5_1:19157387-19157406 Msa0722020:intron 45.0%
ATGAAATTCGGATCGGATGC+AGG - chr5_1:19157394-19157413 Msa0722020:intron 45.0%
TGAAATTCGGATCGGATGCA+GGG - chr5_1:19157395-19157414 Msa0722020:intron 45.0%
TAGAGATGCACTGGATGCTT+TGG - chr5_1:19157692-19157711 Msa0722020:intron 45.0%
AGAGATGCACTGGATGCTTT+GGG - chr5_1:19157693-19157712 Msa0722020:intron 45.0%
GCTTCTCGATAAGGTCAACA+TGG + chr5_1:19157755-19157774 None:intergenic 45.0%
AGCACGCAACTGACACATTT+CGG + chr5_1:19157933-19157952 None:intergenic 45.0%
CGCAGGTGAAACAACGAACT+GGG + chr5_1:19154590-19154609 None:intergenic 50.0%
! CCAGTTCGTTGTTTCACCTG+CGG - chr5_1:19154588-19154607 Msa0722020:three_prime_UTR 50.0%
! TCGTTGTTTCACCTGCGGAA+AGG - chr5_1:19154593-19154612 Msa0722020:three_prime_UTR 50.0%
GAGATGCACTGGATGCTTTG+GGG - chr5_1:19157694-19157713 Msa0722020:intron 50.0%
GCATACGCCTGCAGCAATAT+CGG + chr5_1:19157725-19157744 None:intergenic 50.0%
CCGCAGGTGAAACAACGAAC+TGG + chr5_1:19154591-19154610 None:intergenic 55.0%
!! TGCACTGGATGCTTTGGGGT+TGG - chr5_1:19157698-19157717 Msa0722020:intron 55.0%
! GGTTGGTCCGATATTGCTGC+AGG - chr5_1:19157715-19157734 Msa0722020:intron 55.0%
TCAGTTGCGTGCTAGTCCTG+TGG - chr5_1:19157940-19157959 Msa0722020:intron 55.0%
GAGAACTGGGGAAGGACGCT+AGG + chr5_1:19157320-19157339 None:intergenic 60.0%
TGTGCGCGGCGTGAGCAGAG+AGG - chr5_1:19154553-19154572 Msa0722020:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 19154512 19158271 19154512 ID=Msa0722020;Name=Msa0722020
chr5_1 mRNA 19154512 19158271 19154512 ID=Msa0722020-mRNA-1;Parent=Msa0722020;Name=Msa0722020-mRNA-1;_AED=0.20;_eAED=0.20;_QI=67|1|1|1|0|0|4|366|71
chr5_1 exon 19154512 19154903 19154512 ID=Msa0722020-mRNA-1:exon:7183;Parent=Msa0722020-mRNA-1
chr5_1 exon 19154994 19155088 19154994 ID=Msa0722020-mRNA-1:exon:7182;Parent=Msa0722020-mRNA-1
chr5_1 exon 19157957 19158015 19157957 ID=Msa0722020-mRNA-1:exon:7181;Parent=Msa0722020-mRNA-1
chr5_1 exon 19158169 19158271 19158169 ID=Msa0722020-mRNA-1:exon:7180;Parent=Msa0722020-mRNA-1
chr5_1 five_prime_UTR 19158205 19158271 19158205 ID=Msa0722020-mRNA-1:five_prime_utr;Parent=Msa0722020-mRNA-1
chr5_1 CDS 19158169 19158204 19158169 ID=Msa0722020-mRNA-1:cds;Parent=Msa0722020-mRNA-1
chr5_1 CDS 19157957 19158015 19157957 ID=Msa0722020-mRNA-1:cds;Parent=Msa0722020-mRNA-1
chr5_1 CDS 19154994 19155088 19154994 ID=Msa0722020-mRNA-1:cds;Parent=Msa0722020-mRNA-1
chr5_1 CDS 19154878 19154903 19154878 ID=Msa0722020-mRNA-1:cds;Parent=Msa0722020-mRNA-1
chr5_1 three_prime_UTR 19154512 19154877 19154512 ID=Msa0722020-mRNA-1:three_prime_utr;Parent=Msa0722020-mRNA-1
Gene Sequence

>Msa0722020

ATGATTATCCCAGTTCGTTGTTTCACCTGCGGAAAGGTCATTGGAAACAAATGGGATTCTTACCTTGACTTTCTTCAAGCTGATTACACTGAAGGAGATGCACTGGATGCTTTGGGGTTGGTCCGATATTGCTGCAGGCGTATGCTTATGACCCATGTTGACCTTATCGAGAAGCTACTGAATTACAATACTATGGAAAAGCATGAAGCCAATTAA

Protein sequence

>Msa0722020

MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKHEAN*