AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0579070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579070 MtrunA17_Chr4g0043721 87.129 202 4 2 3 204 1 180 9.64e-126 352
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579070 AT1G21065.1 81.457 151 28 0 54 204 67 217 1.69e-91 267

Find 67 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTGAACAGGATCTTTC+TGG 0.116045 4_1:+83741724 Msa0579070:CDS
TGCTGCGCTTTCACGCTTAA+TGG 0.223647 4_1:-83741494 None:intergenic
ACTCAGATTACATTGTAAAA+AGG 0.228703 4_1:-83744852 None:intergenic
TGTCTATGTTTCAGGGTATA+TGG 0.238559 4_1:+83744689 Msa0579070:intron
TTAAGCTTTCCATTTGTAAT+TGG 0.251097 4_1:-83743525 None:intergenic
AAATAAAATGACTAATGATT+TGG 0.299561 4_1:-83744938 None:intergenic
CACTTGCTGCCCAGTCGTTT+TGG 0.313948 4_1:+83741292 Msa0579070:CDS
AGAGTGGTTGTCACTCTTAA+TGG 0.316738 4_1:+83744745 Msa0579070:CDS
CTGAATCCACCGCTCCCAAA+TGG 0.374424 4_1:+83741546 Msa0579070:CDS
CATATTAAGTCATCAATGTT+TGG 0.383226 4_1:+83743400 Msa0579070:CDS
CACAGTTGCATTGCATTCAT+AGG 0.389222 4_1:-83744880 None:intergenic
AATTCGATTGAGGAATGTTT+CGG 0.407385 4_1:-83741940 None:intergenic
GCTTTGATTCGCCTTCATTT+CGG 0.408180 4_1:+83744792 Msa0579070:three_prime_UTR
TTAATGGAATATGAGGTGTT+TGG 0.431682 4_1:+83744761 Msa0579070:exon
TTCATTTCGGAACTTATAGC+TGG 0.432935 4_1:+83744805 Msa0579070:three_prime_UTR
TTCAGGATACCAATTACAAA+TGG 0.444301 4_1:+83743516 Msa0579070:intron
GTCACTCTTAATGGAATATG+AGG 0.455709 4_1:+83744754 Msa0579070:CDS
AGATGACAGCCGCGTTTGTA+AGG 0.461854 4_1:-83741593 None:intergenic
GATAGGGAAAGAAATTGAAC+AGG 0.468167 4_1:+83741714 Msa0579070:intron
GCAAGTGCTACTCACACGTT+TGG 0.472072 4_1:-83741276 None:intergenic
TGCAGGGGCCATCTGCACCT+TGG 0.473611 4_1:+83742049 Msa0579070:intron
CCCTCTAGAGTGTGCTTCCA+AGG 0.475370 4_1:-83742066 None:intergenic
TGAATCCACCGCTCCCAAAT+GGG 0.475393 4_1:+83741547 Msa0579070:CDS
AGCTATAAGTTCCGAAATGA+AGG 0.482886 4_1:-83744803 None:intergenic
TGTGTAGTTTACGTGGAGGA+AGG 0.486263 4_1:+83741184 None:intergenic
AAAATATCAACCAAAACGAC+TGG 0.500455 4_1:-83741302 None:intergenic
CTGTCATCTTGTTACTCCCA+AGG 0.510680 4_1:+83741607 Msa0579070:CDS
GCTTAACATGGGAACCTGGC+AGG 0.523728 4_1:+83743542 Msa0579070:CDS
GTATATGGCTTTGTGAGCAC+CGG 0.524933 4_1:+83744704 Msa0579070:CDS
CTGGGCCCATTTGGGAGCGG+TGG 0.526538 4_1:-83741552 None:intergenic
GAAAGCTTAACATGGGAACC+TGG 0.533663 4_1:+83743538 Msa0579070:CDS
TTTATATTGTCAGATGGAGA+TGG 0.537561 4_1:+83741238 Msa0579070:exon
TTAGTGTTTATATTGTCAGA+TGG 0.539378 4_1:+83741232 Msa0579070:exon
ATATATACTCACAGAAGAGA+TGG 0.543708 4_1:-83741765 None:intergenic
TTTCCTTCTAGGAAACATGC+AGG 0.544291 4_1:+83741445 Msa0579070:intron
AGTAAACGATGTTACCTGCC+AGG 0.545004 4_1:-83743556 None:intergenic
TTTCTGGGCCCATTTGGGAG+CGG 0.545582 4_1:-83741555 None:intergenic
TTGTCAGATGGAGATGGGTG+TGG 0.547361 4_1:+83741244 Msa0579070:exon
ATTGATGACTTAATATGAGC+CGG 0.551506 4_1:-83743394 None:intergenic
GAATAATTATATGCACTAAG+TGG 0.552789 4_1:-83744916 None:intergenic
GTGTGCTTCCAAGGTGCAGA+TGG 0.554212 4_1:-83742057 None:intergenic
CTTGAAGACAAAAGAATCCA+TGG 0.555822 4_1:+83741523 Msa0579070:CDS
TTATATTGTCAGATGGAGAT+GGG 0.562843 4_1:+83741239 Msa0579070:exon
CCTCGGGAACAATTCGATTG+AGG 0.564302 4_1:-83741950 None:intergenic
TGTAGTTTACGTGGAGGAAG+GGG 0.564364 4_1:+83741186 None:intergenic
CCTTGGAAGCACACTCTAGA+GGG 0.564381 4_1:+83742066 Msa0579070:CDS
GTGTAGTTTACGTGGAGGAA+GGG 0.566010 4_1:+83741185 None:intergenic
TGTAGGTCATGATGACATGC+CGG 0.579488 4_1:+83743375 Msa0579070:intron
AATTATATGCACTAAGTGGT+CGG 0.589344 4_1:-83744912 None:intergenic
TATATACTCACAGAAGAGAT+GGG 0.591373 4_1:-83741764 None:intergenic
TTTGTAAGGTGGTAGAGCGA+TGG 0.592048 4_1:-83741579 None:intergenic
GGGAGCGGTGGATTCAGCCA+TGG 0.593135 4_1:-83741540 None:intergenic
TACAAATGGAAAGCTTAACA+TGG 0.595390 4_1:+83743530 Msa0579070:CDS
ACAACCACTCTTCGTGAGGT+AGG 0.608382 4_1:-83744733 None:intergenic
TGACAGCCGCGTTTGTAAGG+TGG 0.611847 4_1:-83741590 None:intergenic
TCATCCTACCTCACGAAGAG+TGG 0.624302 4_1:+83744729 Msa0579070:CDS
TTCGTGAGGTAGGATGATCC+CGG 0.626171 4_1:-83744723 None:intergenic
TATATGGCTTTGTGAGCACC+GGG 0.627807 4_1:+83744705 Msa0579070:CDS
CCTCAATCGAATTGTTCCCG+AGG 0.630614 4_1:+83741950 Msa0579070:CDS
ACCTTGGAAGCACACTCTAG+AGG 0.633350 4_1:+83742065 Msa0579070:CDS
GATCTTTCTGGATTCAAGTG+CGG 0.636539 4_1:+83741736 Msa0579070:CDS
ACAAATGGAAAGCTTAACAT+GGG 0.648618 4_1:+83743531 Msa0579070:CDS
AAATATCAACCAAAACGACT+GGG 0.650300 4_1:-83741301 None:intergenic
AATGTGTGTAGTTTACGTGG+AGG 0.653920 4_1:+83741180 None:intergenic
AGAAATGTGTGTAGTTTACG+TGG 0.688178 4_1:+83741177 None:intergenic
AGTGACAACCACTCTTCGTG+AGG 0.692534 4_1:-83744737 None:intergenic
GCTCTACCACCTTACAAACG+CGG 0.803139 4_1:+83741584 Msa0579070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAACTTTAAATATGATTA+AGG + chr4_1:83742130-83742149 Msa0579070:intron 10.0%
!!! TTTGAAATATTTTATAATGT+TGG + chr4_1:83744505-83744524 Msa0579070:intron 10.0%
!! AGTAAATGAAAAATGAAATT+GGG - chr4_1:83741663-83741682 None:intergenic 15.0%
!! AAGTAAATGAAAAATGAAAT+TGG - chr4_1:83741664-83741683 None:intergenic 15.0%
!! ATGAATGAATAAACAAATAT+TGG - chr4_1:83741988-83742007 None:intergenic 15.0%
!! TATAACAAAAGAAAAAACAA+AGG - chr4_1:83742299-83742318 None:intergenic 15.0%
!!! TTTCTTTTTGTAAAATAACA+AGG - chr4_1:83743964-83743983 None:intergenic 15.0%
!!! AATTTGCTTATTAAAAATTG+TGG + chr4_1:83744298-83744317 Msa0579070:intron 15.0%
!!! AATGTGTTTTTTTATTCATA+AGG - chr4_1:83744400-83744419 None:intergenic 15.0%
!! AAATAAAATGACTAATGATT+TGG - chr4_1:83744941-83744960 None:intergenic 15.0%
!!! ATCTTTTTTTTTTTCCTTCT+AGG + chr4_1:83741434-83741453 Msa0579070:intron 20.0%
!! TAAATGAAAAATGAAATTGG+GGG - chr4_1:83741661-83741680 None:intergenic 20.0%
!! GTAAATGAAAAATGAAATTG+GGG - chr4_1:83741662-83741681 None:intergenic 20.0%
!! TCTGAAGAAAAAAAATAGTT+GGG - chr4_1:83741696-83741715 None:intergenic 20.0%
!! ATCTGAAGAAAAAAAATAGT+TGG - chr4_1:83741697-83741716 None:intergenic 20.0%
!!! ACTATTTTTTTTCTTCAGAT+AGG + chr4_1:83741697-83741716 Msa0579070:intron 20.0%
!!! CTATTTTTTTTCTTCAGATA+GGG + chr4_1:83741698-83741717 Msa0579070:intron 20.0%
!! AATAAACAAATATTGGTGAA+TGG - chr4_1:83741981-83742000 None:intergenic 20.0%
!! TTTAAATATGATTAAGGAGT+AGG + chr4_1:83742136-83742155 Msa0579070:intron 20.0%
!! TAGTTTATAGTAGGTATAAT+GGG - chr4_1:83742788-83742807 None:intergenic 20.0%
!! ATAGTTTATAGTAGGTATAA+TGG - chr4_1:83742789-83742808 None:intergenic 20.0%
!! ACTTCATTATAGTTTATAGT+AGG - chr4_1:83742797-83742816 None:intergenic 20.0%
!! AAATATTTAGATTCTGTTCT+TGG + chr4_1:83743055-83743074 Msa0579070:intron 20.0%
!! AATATTTAGATTCTGTTCTT+GGG + chr4_1:83743056-83743075 Msa0579070:intron 20.0%
!! AAGCAAAAAAATGCTTAAAA+TGG - chr4_1:83743157-83743176 None:intergenic 20.0%
!!! AATTCAATAGTAACTTTTGT+GGG - chr4_1:83743639-83743658 None:intergenic 20.0%
!!! AAATTCAATAGTAACTTTTG+TGG - chr4_1:83743640-83743659 None:intergenic 20.0%
!! GAAAATGATTAATAATTGGT+AGG - chr4_1:83743701-83743720 None:intergenic 20.0%
!!! GATTTTTATAAGAATTTGGT+CGG - chr4_1:83743723-83743742 None:intergenic 20.0%
!!! TCGTGATTTTTATAAGAATT+TGG - chr4_1:83743727-83743746 None:intergenic 20.0%
! TTAGTGTTTATATTGTCAGA+TGG + chr4_1:83741232-83741251 Msa0579070:exon 25.0%
! AAAATTGTGAGATTGAGATT+GGG - chr4_1:83741638-83741657 None:intergenic 25.0%
! CTGAAGAAAAAAAATAGTTG+GGG - chr4_1:83741695-83741714 None:intergenic 25.0%
! AAAAGAAAAAACAAAGGCAA+AGG - chr4_1:83742293-83742312 None:intergenic 25.0%
! ATAAACGCTAATCATATAAG+TGG - chr4_1:83742346-83742365 None:intergenic 25.0%
! TCTTGTATATAACATTGCTT+CGG + chr4_1:83742634-83742653 Msa0579070:intron 25.0%
!! TCCATCTCAGTTTAATTTAT+TGG + chr4_1:83743023-83743042 Msa0579070:intron 25.0%
! ACCAATAAATTAAACTGAGA+TGG - chr4_1:83743027-83743046 None:intergenic 25.0%
! ATATTTAGATTCTGTTCTTG+GGG + chr4_1:83743057-83743076 Msa0579070:intron 25.0%
! CTTAATATCCAAACACAAAT+TGG - chr4_1:83743130-83743149 None:intergenic 25.0%
!! ATTTGATAGTCTAAGTAAAC+TGG - chr4_1:83743230-83743249 None:intergenic 25.0%
! GAAAACACGTAAATTATACT+TGG - chr4_1:83743295-83743314 None:intergenic 25.0%
! CATATTAAGTCATCAATGTT+TGG + chr4_1:83743400-83743419 Msa0579070:CDS 25.0%
! TTAAGCTTTCCATTTGTAAT+TGG - chr4_1:83743528-83743547 None:intergenic 25.0%
! ACTATTGAATTTGAGTATGT+TGG + chr4_1:83743648-83743667 Msa0579070:intron 25.0%
! GTCGGAAAATGATTAATAAT+TGG - chr4_1:83743705-83743724 None:intergenic 25.0%
!!! GTCATTGATTTTTTTACTCT+GGG - chr4_1:83743750-83743769 None:intergenic 25.0%
!!! AGTCATTGATTTTTTTACTC+TGG - chr4_1:83743751-83743770 None:intergenic 25.0%
! GAGTAAAAAAATCAATGACT+AGG + chr4_1:83743751-83743770 Msa0579070:intron 25.0%
! CTAAATATATGGCATTAATG+AGG - chr4_1:83743863-83743882 None:intergenic 25.0%
! AATGCCATATATTTAGTGAT+TGG + chr4_1:83743867-83743886 Msa0579070:intron 25.0%
! TCTACCAATCACTAAATATA+TGG - chr4_1:83743874-83743893 None:intergenic 25.0%
! ATTAAATTCCTTACATCACA+CGG + chr4_1:83744095-83744114 Msa0579070:intron 25.0%
!!! GATGGAAAACTTATTTTCTT+AGG + chr4_1:83744233-83744252 Msa0579070:intron 25.0%
!! TAAATTTTCTTCAAAGCCTT+CGG - chr4_1:83744325-83744344 None:intergenic 25.0%
!!! AACGTCATTTATTTTTGTAC+TGG + chr4_1:83744352-83744371 Msa0579070:intron 25.0%
!!! ACGTCATTTATTTTTGTACT+GGG + chr4_1:83744353-83744372 Msa0579070:intron 25.0%
! CATAAGGATAAACTTTATTG+AGG - chr4_1:83744384-83744403 None:intergenic 25.0%
! CTCAGATTACATTGTAAAAA+GGG - chr4_1:83744854-83744873 None:intergenic 25.0%
! ACTCAGATTACATTGTAAAA+AGG - chr4_1:83744855-83744874 None:intergenic 25.0%
! GAATAATTATATGCACTAAG+TGG - chr4_1:83744919-83744938 None:intergenic 25.0%
TTTATATTGTCAGATGGAGA+TGG + chr4_1:83741238-83741257 Msa0579070:exon 30.0%
TTATATTGTCAGATGGAGAT+GGG + chr4_1:83741239-83741258 Msa0579070:exon 30.0%
AAATATCAACCAAAACGACT+GGG - chr4_1:83741304-83741323 None:intergenic 30.0%
AAAATATCAACCAAAACGAC+TGG - chr4_1:83741305-83741324 None:intergenic 30.0%
! ATTCTTTTGTCTTCAAGGTT+GGG - chr4_1:83741520-83741539 None:intergenic 30.0%
GAAAATTGTGAGATTGAGAT+TGG - chr4_1:83741639-83741658 None:intergenic 30.0%
TATATACTCACAGAAGAGAT+GGG - chr4_1:83741767-83741786 None:intergenic 30.0%
ATATATACTCACAGAAGAGA+TGG - chr4_1:83741768-83741787 None:intergenic 30.0%
AATTTGTGCTGAAATGAAGT+TGG + chr4_1:83741844-83741863 Msa0579070:intron 30.0%
AATTCGATTGAGGAATGTTT+CGG - chr4_1:83741943-83741962 None:intergenic 30.0%
! GTAGTTTTTGTAAGCTATCA+TGG - chr4_1:83742252-83742271 None:intergenic 30.0%
AAGAGAAAATTGCATTACTG+AGG - chr4_1:83742418-83742437 None:intergenic 30.0%
AATGGTTCTTCAAATGATAG+AGG - chr4_1:83742498-83742517 None:intergenic 30.0%
TTACAATCAGAGTATGTGAA+TGG - chr4_1:83742516-83742535 None:intergenic 30.0%
GAAGCAATGTTATATACAAG+AGG - chr4_1:83742635-83742654 None:intergenic 30.0%
TGTTTAGTTGTTGCATGTTA+CGG - chr4_1:83742676-83742695 None:intergenic 30.0%
! ATGTCCGTTAATTTTGAACT+GGG + chr4_1:83742963-83742982 Msa0579070:intron 30.0%
! CTTATTATGTAATTTGCACG+TGG + chr4_1:83743101-83743120 Msa0579070:intron 30.0%
!!! CTTTGGTTTTGCAATTTTGT+AGG + chr4_1:83743358-83743377 Msa0579070:intron 30.0%
! ATTGATGACTTAATATGAGC+CGG - chr4_1:83743397-83743416 None:intergenic 30.0%
TGAAAATACAAGACATCAGT+AGG - chr4_1:83743500-83743519 None:intergenic 30.0%
! TACTGATGTCTTGTATTTTC+AGG + chr4_1:83743499-83743518 Msa0579070:intron 30.0%
TTCAGGATACCAATTACAAA+TGG + chr4_1:83743516-83743535 Msa0579070:intron 30.0%
TACAAATGGAAAGCTTAACA+TGG + chr4_1:83743530-83743549 Msa0579070:CDS 30.0%
ACAAATGGAAAGCTTAACAT+GGG + chr4_1:83743531-83743550 Msa0579070:CDS 30.0%
! TTGAACATATGTTTTCAGTG+TGG + chr4_1:83743804-83743823 Msa0579070:intron 30.0%
! TGAACATATGTTTTCAGTGT+GGG + chr4_1:83743805-83743824 Msa0579070:intron 30.0%
ATGGCATTAATGAGGAATTA+CGG - chr4_1:83743855-83743874 None:intergenic 30.0%
GTAGATATGTTTCAAACCAT+TGG + chr4_1:83743889-83743908 Msa0579070:intron 30.0%
AACAGTGTATTGTATACCAA+TGG - chr4_1:83743908-83743927 None:intergenic 30.0%
AAATGTGTGAAATGCAAAAG+TGG - chr4_1:83744063-83744082 None:intergenic 30.0%
! GCATTTCACACATTTTTACT+TGG + chr4_1:83744068-83744087 Msa0579070:intron 30.0%
TTAAATTCCTTACATCACAC+GGG + chr4_1:83744096-83744115 Msa0579070:intron 30.0%
TGCTACTAACAACATTACAT+TGG + chr4_1:83744187-83744206 Msa0579070:intron 30.0%
TACTAACAACATTACATTGG+TGG + chr4_1:83744190-83744209 Msa0579070:intron 30.0%
TATTAAAAATTGTGGTCCGA+AGG + chr4_1:83744306-83744325 Msa0579070:intron 30.0%
!!! CGTCATTTATTTTTGTACTG+GGG + chr4_1:83744354-83744373 Msa0579070:intron 30.0%
! TTAATGGAATATGAGGTGTT+TGG + chr4_1:83744761-83744780 Msa0579070:exon 30.0%
AATTATATGCACTAAGTGGT+CGG - chr4_1:83744915-83744934 None:intergenic 30.0%
!! TTTGGTTGATATTTTCGACC+TGG + chr4_1:83741310-83741329 Msa0579070:CDS 35.0%
!! TTGGTTGATATTTTCGACCT+GGG + chr4_1:83741311-83741330 Msa0579070:CDS 35.0%
! GATTCTTTTGTCTTCAAGGT+TGG - chr4_1:83741521-83741540 None:intergenic 35.0%
! CATGGATTCTTTTGTCTTCA+AGG - chr4_1:83741525-83741544 None:intergenic 35.0%
CTTGAAGACAAAAGAATCCA+TGG + chr4_1:83741523-83741542 Msa0579070:CDS 35.0%
GATAGGGAAAGAAATTGAAC+AGG + chr4_1:83741714-83741733 Msa0579070:intron 35.0%
GAAATTGAACAGGATCTTTC+TGG + chr4_1:83741724-83741743 Msa0579070:CDS 35.0%
ATTGGTGAATGGTAAAACCT+CGG - chr4_1:83741970-83741989 None:intergenic 35.0%
! TTGAAAATTTTGTGTCCTGC+AGG + chr4_1:83742032-83742051 Msa0579070:intron 35.0%
! TGAAAATTTTGTGTCCTGCA+GGG + chr4_1:83742033-83742052 Msa0579070:intron 35.0%
CAACTCAATTACACGCTTAT+AGG - chr4_1:83742369-83742388 None:intergenic 35.0%
! ATTGAGTTGCTTATCCAAAG+AGG + chr4_1:83742380-83742399 Msa0579070:intron 35.0%
! TTGAGTTGCTTATCCAAAGA+GGG + chr4_1:83742381-83742400 Msa0579070:intron 35.0%
TTTAGTTGTTGCATGTTACG+GGG - chr4_1:83742674-83742693 None:intergenic 35.0%
GTTTAGTTGTTGCATGTTAC+GGG - chr4_1:83742675-83742694 None:intergenic 35.0%
TGAGATGTTAGATGCATTTG+TGG - chr4_1:83742715-83742734 None:intergenic 35.0%
CAATGTGAATCCATTTGCAA+AGG + chr4_1:83742733-83742752 Msa0579070:intron 35.0%
CTTTGCAAACTTGCAACAAT+GGG - chr4_1:83742834-83742853 None:intergenic 35.0%
TCTTTGCAAACTTGCAACAA+TGG - chr4_1:83742835-83742854 None:intergenic 35.0%
TTTCAACACACATCATGGTT+GGG - chr4_1:83742859-83742878 None:intergenic 35.0%
ATTTCAACACACATCATGGT+TGG - chr4_1:83742860-83742879 None:intergenic 35.0%
AACCATGATGTGTGTTGAAA+TGG + chr4_1:83742859-83742878 Msa0579070:intron 35.0%
AATTTAACTAGAGCAGAGGA+TGG - chr4_1:83742923-83742942 None:intergenic 35.0%
GATCAATTTAACTAGAGCAG+AGG - chr4_1:83742927-83742946 None:intergenic 35.0%
CTCTAGTTAAATTGATCCCT+GGG + chr4_1:83742930-83742949 Msa0579070:intron 35.0%
! CATGTCCGTTAATTTTGAAC+TGG + chr4_1:83742962-83742981 Msa0579070:intron 35.0%
GCATCCCAGTTCAAAATTAA+CGG - chr4_1:83742970-83742989 None:intergenic 35.0%
! TAATTTTGAACTGGGATGCT+AGG + chr4_1:83742971-83742990 Msa0579070:intron 35.0%
GACTATCAAATTGACAACCT+TGG + chr4_1:83743239-83743258 Msa0579070:intron 35.0%
GCATTGTTACGTAATAACCA+AGG - chr4_1:83743259-83743278 None:intergenic 35.0%
TTACGTAACAATGCTGTTGT+TGG + chr4_1:83743265-83743284 Msa0579070:intron 35.0%
! AGACCATTATTGGTTGGATA+GGG - chr4_1:83743340-83743359 None:intergenic 35.0%
! AAGACCATTATTGGTTGGAT+AGG - chr4_1:83743341-83743360 None:intergenic 35.0%
ATCCAACCAATAATGGTCTT+TGG + chr4_1:83743341-83743360 Msa0579070:intron 35.0%
AACCAAAGACCATTATTGGT+TGG - chr4_1:83743346-83743365 None:intergenic 35.0%
GCAAAACCAAAGACCATTAT+TGG - chr4_1:83743350-83743369 None:intergenic 35.0%
GATTTACCTATAGACGTTCT+TGG + chr4_1:83743585-83743604 Msa0579070:intron 35.0%
AAACATCACATGGATAGTGT+AGG - chr4_1:83744035-83744054 None:intergenic 35.0%
CTTATCTGTGTAAAATCACG+AGG + chr4_1:83744141-83744160 Msa0579070:intron 35.0%
!!! ACGAGGACAAGTTTTAGATT+AGG + chr4_1:83744158-83744177 Msa0579070:intron 35.0%
TGATTAAGAGTTGCTTGAGA+TGG + chr4_1:83744533-83744552 Msa0579070:intron 35.0%
GCTTGAGATGGATAATTGTT+CGG + chr4_1:83744545-83744564 Msa0579070:intron 35.0%
TCTACTTCTGTCTATGTTTC+AGG + chr4_1:83744681-83744700 Msa0579070:intron 35.0%
CTACTTCTGTCTATGTTTCA+GGG + chr4_1:83744682-83744701 Msa0579070:intron 35.0%
TGTCTATGTTTCAGGGTATA+TGG + chr4_1:83744689-83744708 Msa0579070:intron 35.0%
GTCACTCTTAATGGAATATG+AGG + chr4_1:83744754-83744773 Msa0579070:CDS 35.0%
AGCTATAAGTTCCGAAATGA+AGG - chr4_1:83744806-83744825 None:intergenic 35.0%
TTCATTTCGGAACTTATAGC+TGG + chr4_1:83744805-83744824 Msa0579070:three_prime_UTR 35.0%
! TTGATATTTTCGACCTGGGT+GGG + chr4_1:83741315-83741334 Msa0579070:intron 40.0%
! TTTCCTTCTAGGAAACATGC+AGG + chr4_1:83741445-83741464 Msa0579070:intron 40.0%
ATTGTGAGATTGAGATTGGG+AGG - chr4_1:83741635-83741654 None:intergenic 40.0%
GATCTTTCTGGATTCAAGTG+CGG + chr4_1:83741736-83741755 Msa0579070:CDS 40.0%
TTGGTGAATGGTAAAACCTC+GGG - chr4_1:83741969-83741988 None:intergenic 40.0%
! GAAAATTTTGTGTCCTGCAG+GGG + chr4_1:83742034-83742053 Msa0579070:intron 40.0%
TTAAGGAGTAGGAGCAAGTT+TGG + chr4_1:83742147-83742166 Msa0579070:intron 40.0%
CAAATGATAGAGGCTTTCTG+TGG - chr4_1:83742488-83742507 None:intergenic 40.0%
TAATCAGTTAGTTAGTGCGC+TGG + chr4_1:83742568-83742587 Msa0579070:intron 40.0%
TGTGAATCCATTTGCAAAGG+AGG + chr4_1:83742736-83742755 Msa0579070:intron 40.0%
GTGAATCCATTTGCAAAGGA+GGG + chr4_1:83742737-83742756 Msa0579070:intron 40.0%
TGAATCCATTTGCAAAGGAG+GGG + chr4_1:83742738-83742757 Msa0579070:intron 40.0%
! TGCCATTTCAACACACATCA+TGG - chr4_1:83742864-83742883 None:intergenic 40.0%
AGTTGAATTGAGCTCCAATG+AGG + chr4_1:83742884-83742903 Msa0579070:intron 40.0%
GCTCTAGTTAAATTGATCCC+TGG + chr4_1:83742929-83742948 Msa0579070:intron 40.0%
AGATTACACTAGACCAAACC+AGG - chr4_1:83742998-83743017 None:intergenic 40.0%
CGTGGTATCCAATTTGTGTT+TGG + chr4_1:83743119-83743138 Msa0579070:intron 40.0%
GAGTTTACAAATCGAGCCTA+CGG + chr4_1:83743196-83743215 Msa0579070:intron 40.0%
TAAACTGGTGAAATCTCCGT+AGG - chr4_1:83743215-83743234 None:intergenic 40.0%
TGGAACATACAACAGATTGG+GGG - chr4_1:83743317-83743336 None:intergenic 40.0%
GTGGAACATACAACAGATTG+GGG - chr4_1:83743318-83743337 None:intergenic 40.0%
GGTGGAACATACAACAGATT+GGG - chr4_1:83743319-83743338 None:intergenic 40.0%
TTTATGCGCATGTACGTTCA+AGG + chr4_1:83743779-83743798 Msa0579070:intron 40.0%
ACAGCACTACATGTCAAGAT+TGG + chr4_1:83744000-83744019 Msa0579070:intron 40.0%
ATCACATGGATAGTGTAGGA+AGG - chr4_1:83744031-83744050 None:intergenic 40.0%
AGTGGTTGAGAAACATCACA+TGG - chr4_1:83744045-83744064 None:intergenic 40.0%
ATCAGCTCTTCTTAGATACG+AGG - chr4_1:83744216-83744235 None:intergenic 40.0%
TCGTATCTAAGAAGAGCTGA+TGG + chr4_1:83744215-83744234 Msa0579070:intron 40.0%
CTTGTCCACAATGTAGGTAA+TGG + chr4_1:83744261-83744280 Msa0579070:intron 40.0%
AACTGCCATTACCTACATTG+TGG - chr4_1:83744269-83744288 None:intergenic 40.0%
CAGTAGTGCAATCATTTGCA+AGG - chr4_1:83744576-83744595 None:intergenic 40.0%
AGAGTGGTTGTCACTCTTAA+TGG + chr4_1:83744745-83744764 Msa0579070:CDS 40.0%
! GCTTTGATTCGCCTTCATTT+CGG + chr4_1:83744792-83744811 Msa0579070:three_prime_UTR 40.0%
CACAGTTGCATTGCATTCAT+AGG - chr4_1:83744883-83744902 None:intergenic 40.0%
! GTTGATATTTTCGACCTGGG+TGG + chr4_1:83741314-83741333 Msa0579070:intron 45.0%
ACACCTGCATGTTTCCTAGA+AGG - chr4_1:83741451-83741470 None:intergenic 45.0%
! ATGGTTTTCTGGGCCCATTT+GGG - chr4_1:83741563-83741582 None:intergenic 45.0%
! TGGTAGAGCGATGGTTTTCT+GGG - chr4_1:83741573-83741592 None:intergenic 45.0%
TTTGTAAGGTGGTAGAGCGA+TGG - chr4_1:83741582-83741601 None:intergenic 45.0%
CTGTCATCTTGTTACTCCCA+AGG + chr4_1:83741607-83741626 Msa0579070:CDS 45.0%
TTGAGATTGGGAGGAACCTT+GGG - chr4_1:83741626-83741645 None:intergenic 45.0%
ATTGAGATTGGGAGGAACCT+TGG - chr4_1:83741627-83741646 None:intergenic 45.0%
TTGCTTATCCAAAGAGGGTC+TGG + chr4_1:83742386-83742405 Msa0579070:intron 45.0%
AGCTCATTCATGAGCTAAGG+AGG - chr4_1:83742611-83742630 None:intergenic 45.0%
GGTAGCTCATTCATGAGCTA+AGG - chr4_1:83742614-83742633 None:intergenic 45.0%
TGAGCTCCAATGAGGAAAGT+CGG + chr4_1:83742892-83742911 Msa0579070:intron 45.0%
TAACTAGAGCAGAGGATGGT+GGG - chr4_1:83742919-83742938 None:intergenic 45.0%
TTAACTAGAGCAGAGGATGG+TGG - chr4_1:83742920-83742939 None:intergenic 45.0%
GGACATGTTTACGAATCCCA+GGG - chr4_1:83742949-83742968 None:intergenic 45.0%
GGGTGGAACATACAACAGAT+TGG - chr4_1:83743320-83743339 None:intergenic 45.0%
! CCATTATTGGTTGGATAGGG+TGG - chr4_1:83743337-83743356 None:intergenic 45.0%
CCACCCTATCCAACCAATAA+TGG + chr4_1:83743334-83743353 Msa0579070:intron 45.0%
TGTAGGTCATGATGACATGC+CGG + chr4_1:83743375-83743394 Msa0579070:intron 45.0%
GAAAGCTTAACATGGGAACC+TGG + chr4_1:83743538-83743557 Msa0579070:CDS 45.0%
AGTAAACGATGTTACCTGCC+AGG - chr4_1:83743559-83743578 None:intergenic 45.0%
GCTTGACCAAGAACGTCTAT+AGG - chr4_1:83743594-83743613 None:intergenic 45.0%
GCATTGCTTGTCCACAATGT+AGG + chr4_1:83744255-83744274 Msa0579070:intron 45.0%
!! GTATATGGCTTTGTGAGCAC+CGG + chr4_1:83744704-83744723 Msa0579070:CDS 45.0%
!! TATATGGCTTTGTGAGCACC+GGG + chr4_1:83744705-83744724 Msa0579070:CDS 45.0%
!!! TTTATTTTTATAAATAAACA+CGG - chr4_1:83744449-83744468 None:intergenic 5.0%
TTGTCAGATGGAGATGGGTG+TGG + chr4_1:83741244-83741263 Msa0579070:exon 50.0%
! GCAAGTGCTACTCACACGTT+TGG - chr4_1:83741279-83741298 None:intergenic 50.0%
AACTTAAGTGACACCCACCC+AGG - chr4_1:83741331-83741350 None:intergenic 50.0%
TGCTGCGCTTTCACGCTTAA+TGG - chr4_1:83741497-83741516 None:intergenic 50.0%
TGAATCCACCGCTCCCAAAT+GGG + chr4_1:83741547-83741566 Msa0579070:CDS 50.0%
! GATGGTTTTCTGGGCCCATT+TGG - chr4_1:83741564-83741583 None:intergenic 50.0%
! GTGGTAGAGCGATGGTTTTC+TGG - chr4_1:83741574-83741593 None:intergenic 50.0%
GCTCTACCACCTTACAAACG+CGG + chr4_1:83741584-83741603 Msa0579070:CDS 50.0%
AGATGACAGCCGCGTTTGTA+AGG - chr4_1:83741596-83741615 None:intergenic 50.0%
CCTCGGGAACAATTCGATTG+AGG - chr4_1:83741953-83741972 None:intergenic 50.0%
CCTCAATCGAATTGTTCCCG+AGG + chr4_1:83741950-83741969 Msa0579070:CDS 50.0%
! ACCTTGGAAGCACACTCTAG+AGG + chr4_1:83742065-83742084 Msa0579070:CDS 50.0%
! CCTTGGAAGCACACTCTAGA+GGG + chr4_1:83742066-83742085 Msa0579070:CDS 50.0%
GTGTTCCCCTCCTTTGCAAA+TGG - chr4_1:83742746-83742765 None:intergenic 50.0%
CGGACATGTTTACGAATCCC+AGG - chr4_1:83742950-83742969 None:intergenic 50.0%
TCAAGTGCCCGTGTGATGTA+AGG - chr4_1:83744106-83744125 None:intergenic 50.0%
TTCGTGAGGTAGGATGATCC+CGG - chr4_1:83744726-83744745 None:intergenic 50.0%
TCATCCTACCTCACGAAGAG+TGG + chr4_1:83744729-83744748 Msa0579070:CDS 50.0%
ACAACCACTCTTCGTGAGGT+AGG - chr4_1:83744736-83744755 None:intergenic 50.0%
AGTGACAACCACTCTTCGTG+AGG - chr4_1:83744740-83744759 None:intergenic 50.0%
!! CACTTGCTGCCCAGTCGTTT+TGG + chr4_1:83741292-83741311 Msa0579070:CDS 55.0%
CTGAATCCACCGCTCCCAAA+TGG + chr4_1:83741546-83741565 Msa0579070:CDS 55.0%
TTTCTGGGCCCATTTGGGAG+CGG - chr4_1:83741558-83741577 None:intergenic 55.0%
TGACAGCCGCGTTTGTAAGG+TGG - chr4_1:83741593-83741612 None:intergenic 55.0%
GTGTGCTTCCAAGGTGCAGA+TGG - chr4_1:83742060-83742079 None:intergenic 55.0%
!! CCCTCTAGAGTGTGCTTCCA+AGG - chr4_1:83742069-83742088 None:intergenic 55.0%
GGCTAGATCCAGACCCTCTT+TGG - chr4_1:83742397-83742416 None:intergenic 55.0%
! GTGGGACCGACTTTCCTCAT+TGG - chr4_1:83742901-83742920 None:intergenic 55.0%
TGAACTGGGATGCTAGGTCC+TGG + chr4_1:83742977-83742996 Msa0579070:intron 55.0%
TGGGATGCTAGGTCCTGGTT+TGG + chr4_1:83742982-83743001 Msa0579070:intron 55.0%
GCTTAACATGGGAACCTGGC+AGG + chr4_1:83743542-83743561 Msa0579070:CDS 55.0%
! GGGAGCGGTGGATTCAGCCA+TGG - chr4_1:83741543-83741562 None:intergenic 65.0%
AAGGTGCAGATGGCCCCTGC+AGG - chr4_1:83742050-83742069 None:intergenic 65.0%
TGCAGGGGCCATCTGCACCT+TGG + chr4_1:83742049-83742068 Msa0579070:intron 65.0%
CTGGGCCCATTTGGGAGCGG+TGG - chr4_1:83741555-83741574 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83741190 83745032 83741190 ID=Msa0579070;Name=Msa0579070
chr4_1 mRNA 83741190 83745032 83741190 ID=Msa0579070-mRNA-1;Parent=Msa0579070;Name=Msa0579070-mRNA-1;_AED=0.29;_eAED=0.29;_QI=61|1|1|1|1|1|8|258|204
chr4_1 exon 83741190 83741332 83741190 ID=Msa0579070-mRNA-1:exon:30554;Parent=Msa0579070-mRNA-1
chr4_1 exon 83741456 83741628 83741456 ID=Msa0579070-mRNA-1:exon:30555;Parent=Msa0579070-mRNA-1
chr4_1 exon 83741715 83741775 83741715 ID=Msa0579070-mRNA-1:exon:30556;Parent=Msa0579070-mRNA-1
chr4_1 exon 83741877 83741971 83741877 ID=Msa0579070-mRNA-1:exon:30557;Parent=Msa0579070-mRNA-1
chr4_1 exon 83742054 83742087 83742054 ID=Msa0579070-mRNA-1:exon:30558;Parent=Msa0579070-mRNA-1
chr4_1 exon 83743380 83743434 83743380 ID=Msa0579070-mRNA-1:exon:30559;Parent=Msa0579070-mRNA-1
chr4_1 exon 83743521 83743563 83743521 ID=Msa0579070-mRNA-1:exon:30560;Parent=Msa0579070-mRNA-1
chr4_1 exon 83744703 83745032 83744703 ID=Msa0579070-mRNA-1:exon:30561;Parent=Msa0579070-mRNA-1
chr4_1 five_prime_UTR 83741190 83741250 83741190 ID=Msa0579070-mRNA-1:five_prime_utr;Parent=Msa0579070-mRNA-1
chr4_1 CDS 83741251 83741332 83741251 ID=Msa0579070-mRNA-1:cds;Parent=Msa0579070-mRNA-1
chr4_1 CDS 83741456 83741628 83741456 ID=Msa0579070-mRNA-1:cds;Parent=Msa0579070-mRNA-1
chr4_1 CDS 83741715 83741775 83741715 ID=Msa0579070-mRNA-1:cds;Parent=Msa0579070-mRNA-1
chr4_1 CDS 83741877 83741971 83741877 ID=Msa0579070-mRNA-1:cds;Parent=Msa0579070-mRNA-1
chr4_1 CDS 83742054 83742087 83742054 ID=Msa0579070-mRNA-1:cds;Parent=Msa0579070-mRNA-1
chr4_1 CDS 83743380 83743434 83743380 ID=Msa0579070-mRNA-1:cds;Parent=Msa0579070-mRNA-1
chr4_1 CDS 83743521 83743563 83743521 ID=Msa0579070-mRNA-1:cds;Parent=Msa0579070-mRNA-1
chr4_1 CDS 83744703 83744774 83744703 ID=Msa0579070-mRNA-1:cds;Parent=Msa0579070-mRNA-1
chr4_1 three_prime_UTR 83744775 83745032 83744775 ID=Msa0579070-mRNA-1:three_prime_utr;Parent=Msa0579070-mRNA-1
Gene Sequence

>Msa0579070

ATGGAGATGGGTGTGGAAAGCATAACCAAACGTGTGAGTAGCACTTGCTGCCCAGTCGTTTTGGTTGATATTTTCGACCTGGGAAACATGCAGGTGTCATCACTGTGCGTAGCAAAGTTTCCATTAAGCGTGAAAGCGCAGCACCCAACCTTGAAGACAAAAGAATCCATGGCTGAATCCACCGCTCCCAAATGGGCCCAGAAAACCATCGCTCTACCACCTTACAAACGCGGCTGTCATCTTGTTACTCCCAAGATAGGGAAAGAAATTGAACAGGATCTTTCTGGATTCAAGTGCGGTCTCGCCCATCTCTTCTTGCAGCATACAAGTGCTTCTCTTACTATCAATGAAAATTATGACACTGATGTTCGCGATGATACCGAAACATTCCTCAATCGAATTGTTCCCGAGGGGCCATCTGCACCTTGGAAGCACACTCTAGAGGGTCATGATGACATGCCGGCTCATATTAAGTCATCAATGTTTGGCTGTGCACTCACGATACCAATTACAAATGGAAAGCTTAACATGGGAACCTGGCAGGGTATATGGCTTTGTGAGCACCGGGATCATCCTACCTCACGAAGAGTGGTTGTCACTCTTAATGGAATATGA

Protein sequence

>Msa0579070

MEMGVESITKRVSSTCCPVVLVDIFDLGNMQVSSLCVAKFPLSVKAQHPTLKTKESMAESTAPKWAQKTIALPPYKRGCHLVTPKIGKEIEQDLSGFKCGLAHLFLQHTSASLTINENYDTDVRDDTETFLNRIVPEGPSAPWKHTLEGHDDMPAHIKSSMFGCALTIPITNGKLNMGTWQGIWLCEHRDHPTSRRVVVTLNGI*