Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397790 | XP_024639103.1 | 93.277 | 357 | 24 | 0 | 7 | 363 | 3 | 359 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397790 | sp|B9FSC8|OPR11_ORYSJ | 75.698 | 358 | 81 | 1 | 11 | 362 | 6 | 363 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397790 | G7K3R3 | 92.997 | 357 | 25 | 0 | 7 | 363 | 3 | 359 | 0.0 | 695 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa0397790 | 0.801008 | 1.102777e-48 | -8.615850e-47 |
| Msa0037720 | Msa0397790 | 0.807154 | 5.806694e-50 | -8.615850e-47 |
| Msa0083240 | Msa0397790 | 0.821119 | 4.781666e-53 | -8.615850e-47 |
| Msa0129640 | Msa0397790 | 0.837301 | 5.635609e-57 | -8.615850e-47 |
| Msa0374290 | Msa0397790 | 0.836237 | 1.052874e-56 | -8.615850e-47 |
| Msa0397790 | Msa0459640 | 0.802552 | 5.315551e-49 | -8.615850e-47 |
| Msa0397790 | Msa0486980 | 0.939640 | 9.046514e-100 | -8.615850e-47 |
| Msa0397790 | Msa0488580 | 0.807662 | 4.530130e-50 | -8.615850e-47 |
| Msa0397790 | Msa0489070 | 0.904069 | 1.803604e-79 | -8.615850e-47 |
| Msa0397790 | Msa0515540 | 0.811442 | 6.985989e-51 | -8.615850e-47 |
| Msa0397790 | Msa0515590 | 0.810951 | 8.929082e-51 | -8.615850e-47 |
| Msa0397790 | Msa0713060 | 0.820112 | 8.147562e-53 | -8.615850e-47 |
| Msa0397790 | Msa0816630 | 0.813750 | 2.184829e-51 | -8.615850e-47 |
| Msa0397790 | Msa0863940 | 0.810610 | 1.057941e-50 | -8.615850e-47 |
| Msa0397790 | Msa1199870 | 0.818588 | 1.812292e-52 | -8.615850e-47 |
| Msa0397790 | Msa1221220 | 0.801821 | 7.515285e-49 | -8.615850e-47 |
| Msa0397790 | Msa1252810 | 0.817197 | 3.735729e-52 | -8.615850e-47 |
| Msa0397790 | Msa1412410 | 0.834429 | 3.012020e-56 | -8.615850e-47 |
| Msa0397790 | Msa1427860 | 0.840324 | 9.312905e-58 | -8.615850e-47 |
| Msa0351050 | Msa0397790 | 0.925281 | 2.267998e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397790 | MtrunA17_Chr5g0394751 | 92.997 | 357 | 25 | 0 | 7 | 363 | 3 | 359 | 0.0 | 695 |
| Msa0397790 | MtrunA17_Chr5g0394771 | 90.634 | 363 | 34 | 0 | 1 | 363 | 29 | 391 | 0.0 | 689 |
| Msa0397790 | MtrunA17_Chr5g0394861 | 85.984 | 371 | 44 | 3 | 1 | 363 | 1 | 371 | 0.0 | 652 |
| Msa0397790 | MtrunA17_Chr5g0394891 | 83.469 | 369 | 55 | 1 | 1 | 363 | 1 | 369 | 0.0 | 642 |
| Msa0397790 | MtrunA17_Chr5g0394841 | 80.863 | 371 | 63 | 2 | 1 | 363 | 1 | 371 | 0.0 | 624 |
| Msa0397790 | MtrunA17_Chr5g0394811 | 81.319 | 364 | 62 | 2 | 6 | 363 | 115 | 478 | 0.0 | 622 |
| Msa0397790 | MtrunA17_Chr5g0394811 | 68.702 | 131 | 38 | 1 | 18 | 148 | 1 | 128 | 3.13e-53 | 182 |
| Msa0397790 | MtrunA17_Chr5g0395841 | 78.804 | 368 | 72 | 1 | 1 | 362 | 3 | 370 | 0.0 | 613 |
| Msa0397790 | MtrunA17_Chr3g0144001 | 70.137 | 365 | 105 | 2 | 1 | 363 | 1 | 363 | 0.0 | 542 |
| Msa0397790 | MtrunA17_Chr4g0070561 | 53.784 | 370 | 152 | 3 | 12 | 362 | 19 | 388 | 2.82e-144 | 414 |
| Msa0397790 | MtrunA17_Chr5g0394791 | 67.010 | 194 | 52 | 2 | 7 | 194 | 6 | 193 | 2.54e-86 | 259 |
| Msa0397790 | MtrunA17_Chr5g0394801 | 66.667 | 195 | 38 | 1 | 161 | 355 | 18 | 185 | 2.68e-85 | 258 |
| Msa0397790 | MtrunA17_Chr3g0130471 | 86.047 | 43 | 6 | 0 | 188 | 230 | 1 | 43 | 2.12e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397790 | AT1G76690.1 | 73.713 | 369 | 91 | 1 | 1 | 363 | 3 | 371 | 0.0 | 580 |
| Msa0397790 | AT1G76680.1 | 73.171 | 369 | 93 | 2 | 1 | 363 | 1 | 369 | 0.0 | 578 |
| Msa0397790 | AT1G76680.2 | 68.528 | 394 | 93 | 3 | 1 | 363 | 1 | 394 | 0.0 | 565 |
| Msa0397790 | AT1G09400.1 | 70.679 | 324 | 95 | 0 | 18 | 341 | 1 | 324 | 0.0 | 507 |
| Msa0397790 | AT1G09400.2 | 71.970 | 264 | 74 | 0 | 78 | 341 | 2 | 265 | 1.05e-147 | 418 |
| Msa0397790 | AT2G06050.2 | 51.429 | 385 | 164 | 3 | 1 | 362 | 1 | 385 | 3.34e-141 | 406 |
| Msa0397790 | AT2G06050.1 | 51.429 | 385 | 164 | 3 | 1 | 362 | 1 | 385 | 3.34e-141 | 406 |
| Msa0397790 | AT2G06050.3 | 51.429 | 385 | 164 | 3 | 1 | 362 | 1 | 385 | 3.34e-141 | 406 |
| Msa0397790 | AT1G17990.1 | 71.318 | 258 | 71 | 2 | 5 | 260 | 2 | 258 | 6.27e-139 | 396 |
| Msa0397790 | AT1G18020.1 | 71.318 | 258 | 71 | 2 | 5 | 260 | 2 | 258 | 6.27e-139 | 396 |
| Msa0397790 | AT1G17990.2 | 68.217 | 258 | 71 | 3 | 5 | 260 | 2 | 250 | 3.45e-130 | 373 |
Find 104 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATTAATTTGATTTAAT+TGG | 0.198344 | 3_2:+17789958 | Msa0397790:five_prime_UTR |
| GCAAACCTCTTTGGCAAATC+TGG | 0.210347 | 3_2:-17791617 | None:intergenic |
| CTCCTCTTAACAAGTATAAT+AGG | 0.228308 | 3_2:+17791648 | Msa0397790:CDS |
| AAATGCGTTGGGACTTTATA+TGG | 0.245481 | 3_2:+17791370 | Msa0397790:CDS |
| AGGGCAGATCTTGTAGTTTA+TGG | 0.251067 | 3_2:+17791575 | Msa0397790:CDS |
| CTGAAGTCATTGACAATATC+AGG | 0.283543 | 3_2:-17790938 | None:intergenic |
| TTTAATTGGTGGTATCAAAA+TGG | 0.293740 | 3_2:+17789972 | Msa0397790:exon |
| TAGTCTAATTCCAACTTTAT+CGG | 0.320112 | 3_2:-17791306 | None:intergenic |
| ATCCAGACAGCCCAGGTATA+TGG | 0.329383 | 3_2:+17790315 | Msa0397790:CDS |
| GCATTAAGTGCAAACCTCTT+TGG | 0.332483 | 3_2:-17791626 | None:intergenic |
| CAATTTGAGAGGGAGTTGTT+AGG | 0.341045 | 3_2:-17789902 | None:intergenic |
| TATAAGAAGACCACCTTTAG+AGG | 0.341560 | 3_2:-17790255 | None:intergenic |
| GGCTTTCAATGGCACTTTCA+TGG | 0.346532 | 3_2:+17791502 | Msa0397790:CDS |
| ATGAGACTTCATATGACTTA+AGG | 0.350018 | 3_2:-17792405 | None:intergenic |
| GCATGAACAGCATCTACAAT+AGG | 0.357406 | 3_2:-17790365 | None:intergenic |
| ATATAAAGTCCCAACGCATT+TGG | 0.357484 | 3_2:-17791368 | None:intergenic |
| CTCATTGGCACAAGGCTGTA+AGG | 0.367432 | 3_2:-17791476 | None:intergenic |
| TCCCTATTATACTTGTTAAG+AGG | 0.369675 | 3_2:-17791650 | None:intergenic |
| CAATGGCACTTTCATGGTTG+CGG | 0.371044 | 3_2:+17791508 | Msa0397790:CDS |
| GTCCATATACCTGGGCTGTC+TGG | 0.372045 | 3_2:-17790317 | None:intergenic |
| TCAATGCTATAGCTGAAAAC+AGG | 0.375838 | 3_2:+17791555 | Msa0397790:CDS |
| TGATCCGGTTGTAGGTTATA+CGG | 0.380846 | 3_2:+17791688 | Msa0397790:CDS |
| TACATTTCTGATCCGGTTGT+AGG | 0.387959 | 3_2:+17791680 | Msa0397790:CDS |
| AATGGCACTTTCATGGTTGC+GGG | 0.393208 | 3_2:+17791509 | Msa0397790:CDS |
| TTGAATTTGCCCATCTTGTA+AGG | 0.401075 | 3_2:-17790033 | None:intergenic |
| TCATCTGTCCCAAGTCTTCT+CGG | 0.402184 | 3_2:-17790911 | None:intergenic |
| TCCTCTTAACAAGTATAATA+GGG | 0.406224 | 3_2:+17791649 | Msa0397790:CDS |
| GAATCGTTGTCGATTTCCTT+TGG | 0.407517 | 3_2:+17791250 | Msa0397790:CDS |
| AAAGAATATTGTACTTATTG+AGG | 0.409340 | 3_2:-17791400 | None:intergenic |
| CCATTGAAAGCCTTTCTCAT+TGG | 0.410004 | 3_2:-17791491 | None:intergenic |
| AGGACCTTTGAGAGTAATAG+AGG | 0.421466 | 3_2:-17790235 | None:intergenic |
| GACTCTAATCCAAATGCGTT+GGG | 0.424846 | 3_2:+17791359 | Msa0397790:CDS |
| GCAAATTCAATCTCTCTCAT+AGG | 0.425449 | 3_2:+17790046 | Msa0397790:CDS |
| AACATTCTACATTTCTGATC+CGG | 0.427062 | 3_2:+17791673 | Msa0397790:CDS |
| CAGCCTTGTGCCAATGAGAA+AGG | 0.431994 | 3_2:+17791481 | Msa0397790:CDS |
| GAAGCAGTTGTAAATGAGAT+AGG | 0.432088 | 3_2:+17791281 | Msa0397790:CDS |
| CATTAATTTGATTTAATTGG+TGG | 0.432365 | 3_2:+17789961 | Msa0397790:five_prime_UTR |
| TTCTCGCCACCGAGAAGACT+TGG | 0.434035 | 3_2:+17790902 | Msa0397790:CDS |
| CTTTCTGCATATTCAGCAAA+TGG | 0.438653 | 3_2:-17791332 | None:intergenic |
| GATATCGGTGCTTGTCCATT+CGG | 0.438814 | 3_2:-17790839 | None:intergenic |
| AATTTGAGAGGGAGTTGTTA+GGG | 0.454555 | 3_2:-17789901 | None:intergenic |
| TGCTCTTTAGTCCATATACC+TGG | 0.459561 | 3_2:-17790326 | None:intergenic |
| GAAGGTTCCACTTCCAACCT+TGG | 0.461724 | 3_2:-17791755 | None:intergenic |
| AAGAATATTGTACTTATTGA+GGG | 0.462924 | 3_2:-17791399 | None:intergenic |
| GAGATAGGAGCCGATAAAGT+TGG | 0.478784 | 3_2:+17791296 | Msa0397790:CDS |
| GTCGGATACACCAGTAGCTT+CGG | 0.479603 | 3_2:-17790279 | None:intergenic |
| CTCACTAGAATAAGATCCTA+TGG | 0.486036 | 3_2:+17790188 | Msa0397790:CDS |
| TCTTCTTACACCTTACAAGA+TGG | 0.486533 | 3_2:+17790023 | Msa0397790:CDS |
| CGAATCCAGATTTGCCAAAG+AGG | 0.491902 | 3_2:+17791612 | Msa0397790:CDS |
| ATTGCTTGTGAGTGACTTGT+CGG | 0.493116 | 3_2:-17790867 | None:intergenic |
| CTTCTTATAGCCGAAGCTAC+TGG | 0.505350 | 3_2:+17790269 | Msa0397790:CDS |
| CATGAATGAGTAAATACTCA+TGG | 0.511959 | 3_2:+17792425 | Msa0397790:three_prime_UTR |
| TAAGGTGTAAGAAGAGGAAT+GGG | 0.514396 | 3_2:-17790015 | None:intergenic |
| TTGTCCTCTATTACTCTCAA+AGG | 0.525613 | 3_2:+17790231 | Msa0397790:CDS |
| TCATTGGCACAAGGCTGTAA+GGG | 0.525679 | 3_2:-17791475 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.528089 | 3_2:+17790968 | Msa0397790:CDS |
| GTAAGGTGTAAGAAGAGGAA+TGG | 0.528759 | 3_2:-17790016 | None:intergenic |
| GTAGCATCCAAGGTTGGAAG+TGG | 0.529512 | 3_2:+17791748 | Msa0397790:three_prime_UTR |
| TACTCTCAAAGGTCCTCTAA+AGG | 0.530036 | 3_2:+17790242 | Msa0397790:CDS |
| ATGCTGTACTGTAGCATCCA+AGG | 0.530490 | 3_2:+17791738 | Msa0397790:three_prime_UTR |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 3_2:-17791184 | None:intergenic |
| AATATGCAATTCAATTTGAG+AGG | 0.530530 | 3_2:-17789913 | None:intergenic |
| GACTTGTCGGTAGAAGATAT+CGG | 0.533594 | 3_2:-17790854 | None:intergenic |
| AGACTCTAATCCAAATGCGT+TGG | 0.534520 | 3_2:+17791358 | Msa0397790:CDS |
| GTCGAAATCCATGGAGCTCA+TGG | 0.534699 | 3_2:+17791158 | Msa0397790:CDS |
| TTTGATGGTGTCGAAATCCA+TGG | 0.539312 | 3_2:+17791149 | Msa0397790:CDS |
| CTTCTTACACCTTACAAGAT+GGG | 0.542433 | 3_2:+17790024 | Msa0397790:CDS |
| TTCATACTAGCTTATCGGCT+AGG | 0.542451 | 3_2:+17791870 | Msa0397790:three_prime_UTR |
| TGGATACCCTTGAGCTGTGT+CGG | 0.553060 | 3_2:-17790297 | None:intergenic |
| GTAGATGCTGTTCATGCTAA+AGG | 0.560685 | 3_2:+17790371 | Msa0397790:CDS |
| CCAATGAGAAAGGCTTTCAA+TGG | 0.561406 | 3_2:+17791491 | Msa0397790:CDS |
| AAGCCTTTCTCATTGGCACA+AGG | 0.563142 | 3_2:-17791484 | None:intergenic |
| TAGAGGACAACATGTGGTTG+AGG | 0.573654 | 3_2:-17790218 | None:intergenic |
| GGTGTATCCGACACAGCTCA+AGG | 0.574972 | 3_2:+17790290 | Msa0397790:CDS |
| TAGTCCGTATAACCTACAAC+CGG | 0.576852 | 3_2:-17791692 | None:intergenic |
| CAATATTCTTTACTGTCACA+TGG | 0.576936 | 3_2:+17791412 | Msa0397790:CDS |
| AGCTTCAATAGCATTTCTTG+CGG | 0.576970 | 3_2:-17790966 | None:intergenic |
| GCTCTTTAGTCCATATACCT+GGG | 0.578858 | 3_2:-17790325 | None:intergenic |
| CAAGGGTATCCAGACAGCCC+AGG | 0.584387 | 3_2:+17790308 | Msa0397790:CDS |
| GGCACTTTCATGGTTGCGGG+AGG | 0.587792 | 3_2:+17791512 | Msa0397790:CDS |
| AATGACAGAACAGATGAATA+CGG | 0.588235 | 3_2:+17791215 | Msa0397790:CDS |
| GAAATCGACAACGATTCTCA+AGG | 0.593087 | 3_2:-17791244 | None:intergenic |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 3_2:-17791166 | None:intergenic |
| GGAGGCTATGACAGACAAGA+CGG | 0.604358 | 3_2:+17791530 | Msa0397790:CDS |
| ACTGCTTCAACAACTTCCAA+AGG | 0.607160 | 3_2:-17791266 | None:intergenic |
| TAGGATCTTATTCTAGTGAG+TGG | 0.614903 | 3_2:-17790185 | None:intergenic |
| GAGGCTATGACAGACAAGAC+GGG | 0.616560 | 3_2:+17791531 | Msa0397790:CDS |
| CAATGCTATAGCTGAAAACA+GGG | 0.617928 | 3_2:+17791556 | Msa0397790:CDS |
| ATCTTGTAAGGTGTAAGAAG+AGG | 0.620167 | 3_2:-17790021 | None:intergenic |
| ATATGCAATTCAATTTGAGA+GGG | 0.622130 | 3_2:-17789912 | None:intergenic |
| TGGTTGAGGAACATTGCCAT+AGG | 0.622865 | 3_2:-17790204 | None:intergenic |
| TCTCGCCACCGAGAAGACTT+GGG | 0.626698 | 3_2:+17790903 | Msa0397790:CDS |
| AAATCGACAACGATTCTCAA+GGG | 0.633730 | 3_2:-17791243 | None:intergenic |
| TTTGCTGAATATGCAGAAAG+CGG | 0.633878 | 3_2:+17791335 | Msa0397790:CDS |
| TCTCAAAGGTCCTCTAAAGG+TGG | 0.638482 | 3_2:+17790245 | Msa0397790:CDS |
| CTAAAGAGCAAGTTGAGGCG+TGG | 0.641191 | 3_2:+17790339 | Msa0397790:CDS |
| GACTTCATATGACTTAAGGA+TGG | 0.656688 | 3_2:-17792401 | None:intergenic |
| GTGTATCCGACACAGCTCAA+GGG | 0.660265 | 3_2:+17790291 | Msa0397790:CDS |
| TGTACTGTAGCATCCAAGGT+TGG | 0.667688 | 3_2:+17791742 | Msa0397790:three_prime_UTR |
| TATTCTTTACTGTCACATGG+TGG | 0.684787 | 3_2:+17791415 | Msa0397790:CDS |
| ATGGACTAAAGAGCAAGTTG+AGG | 0.687634 | 3_2:+17790334 | Msa0397790:CDS |
| GAGTAATAGAGGACAACATG+TGG | 0.696474 | 3_2:-17790224 | None:intergenic |
| GACAGAACAGATGAATACGG+TGG | 0.702185 | 3_2:+17791218 | Msa0397790:CDS |
| TCTGTCCCAAGTCTTCTCGG+TGG | 0.713461 | 3_2:-17790908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAATACTAAAAAATAA+CGG | - | chr3_2:17790705-17790724 | None:intergenic | 10.0% |
| !! | AAAAAACTAATTAAATTTGA+AGG | - | chr3_2:17791776-17791795 | None:intergenic | 10.0% |
| !!! | TCACATTAATTTGATTTAAT+TGG | + | chr3_2:17789958-17789977 | Msa0397790:five_prime_UTR | 15.0% |
| !!! | ATTGAAATTGAAAGTATAAT+AGG | - | chr3_2:17790074-17790093 | None:intergenic | 15.0% |
| !! | AATAATCTTCAAATTATATG+AGG | - | chr3_2:17790465-17790484 | None:intergenic | 15.0% |
| !!! | AATTTGAAGATTATTTTAGT+TGG | + | chr3_2:17790470-17790489 | Msa0397790:intron | 15.0% |
| !!! | CATTAATTTGATTTAATTGG+TGG | + | chr3_2:17789961-17789980 | Msa0397790:five_prime_UTR | 20.0% |
| !!! | TACTAAAAAATAACGGATTT+GGG | - | chr3_2:17790698-17790717 | None:intergenic | 20.0% |
| !!! | ATACTAAAAAATAACGGATT+TGG | - | chr3_2:17790699-17790718 | None:intergenic | 20.0% |
| !! | TAGTATTATTACTACTACTA+AGG | + | chr3_2:17790713-17790732 | Msa0397790:intron | 20.0% |
| !! | AGTATTATTACTACTACTAA+GGG | + | chr3_2:17790714-17790733 | Msa0397790:intron | 20.0% |
| !! | AAGAATATTGTACTTATTGA+GGG | - | chr3_2:17791402-17791421 | None:intergenic | 20.0% |
| !! | AAAGAATATTGTACTTATTG+AGG | - | chr3_2:17791403-17791422 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTCATTCAAGAAA+TGG | - | chr3_2:17791719-17791738 | None:intergenic | 20.0% |
| !!! | TTTTATTCATACTAGCTTAT+CGG | + | chr3_2:17791865-17791884 | Msa0397790:three_prime_UTR | 20.0% |
| !! | CTTATATGGTATAAAATATC+AGG | - | chr3_2:17791928-17791947 | None:intergenic | 20.0% |
| !! | AAAGCTAGAAAAATAAATGA+TGG | - | chr3_2:17792025-17792044 | None:intergenic | 20.0% |
| !! | TATTCATGTATGTTAACTAA+AGG | + | chr3_2:17792076-17792095 | Msa0397790:intron | 20.0% |
| ! | ATATGCAATTCAATTTGAGA+GGG | - | chr3_2:17789915-17789934 | None:intergenic | 25.0% |
| ! | AATATGCAATTCAATTTGAG+AGG | - | chr3_2:17789916-17789935 | None:intergenic | 25.0% |
| !! | TTTAATTGGTGGTATCAAAA+TGG | + | chr3_2:17789972-17789991 | Msa0397790:exon | 25.0% |
| !!! | TTGAAGATTATTTTAGTTGG+AGG | + | chr3_2:17790473-17790492 | Msa0397790:intron | 25.0% |
| !! | TTGTTATTGTTGGATTTAGA+TGG | + | chr3_2:17790496-17790515 | Msa0397790:intron | 25.0% |
| ! | CAAAACTATCCAATCAATAT+TGG | - | chr3_2:17790631-17790650 | None:intergenic | 25.0% |
| ! | GTATTATTACTACTACTAAG+GGG | + | chr3_2:17790715-17790734 | Msa0397790:intron | 25.0% |
| ! | AAAACCTGTTGAGAATAAAA+TGG | - | chr3_2:17790816-17790835 | None:intergenic | 25.0% |
| !!! | TACTGATATTTTTCAGAAAC+AGG | + | chr3_2:17791050-17791069 | Msa0397790:intron | 25.0% |
| !!! | AGGACTATTTGTTGATTTAA+AGG | + | chr3_2:17791070-17791089 | Msa0397790:intron | 25.0% |
| !!! | GGACTATTTGTTGATTTAAA+GGG | + | chr3_2:17791071-17791090 | Msa0397790:intron | 25.0% |
| ! | TAGTCTAATTCCAACTTTAT+CGG | - | chr3_2:17791309-17791328 | None:intergenic | 25.0% |
| ! | TCCTCTTAACAAGTATAATA+GGG | + | chr3_2:17791649-17791668 | Msa0397790:CDS | 25.0% |
| ! | ACTAAAAAAACAAATGTGCA+AGG | - | chr3_2:17791801-17791820 | None:intergenic | 25.0% |
| ! | TTTATACCATATAAGCTTTG+TGG | + | chr3_2:17791933-17791952 | Msa0397790:intron | 25.0% |
| ! | TATGTACATTATCATGTTGA+TGG | - | chr3_2:17792058-17792077 | None:intergenic | 25.0% |
| ! | AAGTTCCAAAGAAAACTAAA+TGG | + | chr3_2:17792187-17792206 | Msa0397790:intron | 25.0% |
| ! | ACTACTACCTTGATTTAAAT+AGG | + | chr3_2:17792348-17792367 | Msa0397790:intron | 25.0% |
| ! | TGGTGAAACTATAGAAAATT+TGG | - | chr3_2:17792384-17792403 | None:intergenic | 25.0% |
| ! | CTACATTCTTTTGTCAGATT+TGG | + | chr3_2:17790396-17790415 | Msa0397790:CDS | 30.0% |
| ! | GTTGGAAGATTTTCAAATTC+AGG | + | chr3_2:17790422-17790441 | Msa0397790:CDS | 30.0% |
| AAATTCTTGAGCTTGAAATC+TGG | + | chr3_2:17790600-17790619 | Msa0397790:intron | 30.0% | |
| ACTATCCAATCAATATTGGA+CGG | - | chr3_2:17790627-17790646 | None:intergenic | 30.0% | |
| TATTGAAGCTGGTAAATTTG+TGG | + | chr3_2:17790979-17790998 | Msa0397790:intron | 30.0% | |
| ! | GATTGAAGCACATTTCATTT+TGG | - | chr3_2:17791021-17791040 | None:intergenic | 30.0% |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr3_2:17791187-17791206 | None:intergenic | 30.0% | |
| AATGACAGAACAGATGAATA+CGG | + | chr3_2:17791215-17791234 | Msa0397790:CDS | 30.0% | |
| CAATATTCTTTACTGTCACA+TGG | + | chr3_2:17791412-17791431 | Msa0397790:CDS | 30.0% | |
| !! | TCAGAAGCTGATTTTATTCT+TGG | - | chr3_2:17791443-17791462 | None:intergenic | 30.0% |
| CTCCTCTTAACAAGTATAAT+AGG | + | chr3_2:17791648-17791667 | Msa0397790:CDS | 30.0% | |
| ! | TCCCTATTATACTTGTTAAG+AGG | - | chr3_2:17791653-17791672 | None:intergenic | 30.0% |
| AACATTCTACATTTCTGATC+CGG | + | chr3_2:17791673-17791692 | Msa0397790:CDS | 30.0% | |
| TATCAACCACAAAGCTTATA+TGG | - | chr3_2:17791942-17791961 | None:intergenic | 30.0% | |
| ! | ATATAAGCTTTGTGGTTGAT+AGG | + | chr3_2:17791941-17791960 | Msa0397790:intron | 30.0% |
| TTCTTCTTCTCTTTAATTCC+GGG | - | chr3_2:17791969-17791988 | None:intergenic | 30.0% | |
| CTTCTTCTTCTCTTTAATTC+CGG | - | chr3_2:17791970-17791989 | None:intergenic | 30.0% | |
| ATTGTTAGGATAAACTGCTA+AGG | - | chr3_2:17792115-17792134 | None:intergenic | 30.0% | |
| TCTTGGTGAATTGACAAAAA+AGG | + | chr3_2:17792134-17792153 | Msa0397790:intron | 30.0% | |
| !!! | AGCTTCCATTTAGTTTTCTT+TGG | - | chr3_2:17792195-17792214 | None:intergenic | 30.0% |
| TTCAGCTCCTATTTAAATCA+AGG | - | chr3_2:17792358-17792377 | None:intergenic | 30.0% | |
| ATGAGACTTCATATGACTTA+AGG | - | chr3_2:17792408-17792427 | None:intergenic | 30.0% | |
| CATGAATGAGTAAATACTCA+TGG | + | chr3_2:17792425-17792444 | Msa0397790:three_prime_UTR | 30.0% | |
| AATTTGAGAGGGAGTTGTTA+GGG | - | chr3_2:17789904-17789923 | None:intergenic | 35.0% | |
| TAAGGTGTAAGAAGAGGAAT+GGG | - | chr3_2:17790018-17790037 | None:intergenic | 35.0% | |
| ATCTTGTAAGGTGTAAGAAG+AGG | - | chr3_2:17790024-17790043 | None:intergenic | 35.0% | |
| TCTTCTTACACCTTACAAGA+TGG | + | chr3_2:17790023-17790042 | Msa0397790:CDS | 35.0% | |
| CTTCTTACACCTTACAAGAT+GGG | + | chr3_2:17790024-17790043 | Msa0397790:CDS | 35.0% | |
| TTGAATTTGCCCATCTTGTA+AGG | - | chr3_2:17790036-17790055 | None:intergenic | 35.0% | |
| GCAAATTCAATCTCTCTCAT+AGG | + | chr3_2:17790046-17790065 | Msa0397790:CDS | 35.0% | |
| GGAGGTTAATTAGCAAAACA+AGG | - | chr3_2:17790143-17790162 | None:intergenic | 35.0% | |
| ! | AAAACAACTCTGAAAATGGG+AGG | - | chr3_2:17790161-17790180 | None:intergenic | 35.0% |
| ! | TCCCATTTTCAGAGTTGTTT+TGG | + | chr3_2:17790160-17790179 | Msa0397790:intron | 35.0% |
| ! | GCCAAAACAACTCTGAAAAT+GGG | - | chr3_2:17790164-17790183 | None:intergenic | 35.0% |
| ! | TGCCAAAACAACTCTGAAAA+TGG | - | chr3_2:17790165-17790184 | None:intergenic | 35.0% |
| TAGGATCTTATTCTAGTGAG+TGG | - | chr3_2:17790188-17790207 | None:intergenic | 35.0% | |
| CTCACTAGAATAAGATCCTA+TGG | + | chr3_2:17790188-17790207 | Msa0397790:CDS | 35.0% | |
| TTGTCCTCTATTACTCTCAA+AGG | + | chr3_2:17790231-17790250 | Msa0397790:CDS | 35.0% | |
| TATAAGAAGACCACCTTTAG+AGG | - | chr3_2:17790258-17790277 | None:intergenic | 35.0% | |
| ! | TTTTGTCAGATTTGGCATGT+TGG | + | chr3_2:17790404-17790423 | Msa0397790:CDS | 35.0% |
| ! | TAGTTGGAGGTTGTTATTGT+TGG | + | chr3_2:17790486-17790505 | Msa0397790:intron | 35.0% |
| ATTGTTGGATTTAGATGGTG+TGG | + | chr3_2:17790501-17790520 | Msa0397790:intron | 35.0% | |
| ! | GTGTCCATTTTATTCTCAAC+AGG | + | chr3_2:17790809-17790828 | Msa0397790:intron | 35.0% |
| CTGAAGTCATTGACAATATC+AGG | - | chr3_2:17790941-17790960 | None:intergenic | 35.0% | |
| AGCTTCAATAGCATTTCTTG+CGG | - | chr3_2:17790969-17790988 | None:intergenic | 35.0% | |
| CTCAATTTGATGCAAATTGC+AGG | + | chr3_2:17791125-17791144 | Msa0397790:intron | 35.0% | |
| !! | ATGCAAATTGCAGGTTTTGA+TGG | + | chr3_2:17791134-17791153 | Msa0397790:intron | 35.0% |
| AAATCGACAACGATTCTCAA+GGG | - | chr3_2:17791246-17791265 | None:intergenic | 35.0% | |
| GAAGCAGTTGTAAATGAGAT+AGG | + | chr3_2:17791281-17791300 | Msa0397790:CDS | 35.0% | |
| CTTTCTGCATATTCAGCAAA+TGG | - | chr3_2:17791335-17791354 | None:intergenic | 35.0% | |
| TTTGCTGAATATGCAGAAAG+CGG | + | chr3_2:17791335-17791354 | Msa0397790:CDS | 35.0% | |
| ATATAAAGTCCCAACGCATT+TGG | - | chr3_2:17791371-17791390 | None:intergenic | 35.0% | |
| AAATGCGTTGGGACTTTATA+TGG | + | chr3_2:17791370-17791389 | Msa0397790:CDS | 35.0% | |
| TATTCTTTACTGTCACATGG+TGG | + | chr3_2:17791415-17791434 | Msa0397790:CDS | 35.0% | |
| TCAATGCTATAGCTGAAAAC+AGG | + | chr3_2:17791555-17791574 | Msa0397790:CDS | 35.0% | |
| CAATGCTATAGCTGAAAACA+GGG | + | chr3_2:17791556-17791575 | Msa0397790:CDS | 35.0% | |
| ! | AGAAGAAGCGTATTCGAAAA+TGG | + | chr3_2:17791982-17792001 | Msa0397790:intron | 35.0% |
| GCAGTTTATCCTAACAATCT+TGG | + | chr3_2:17792117-17792136 | Msa0397790:intron | 35.0% | |
| GTCAATTCACCAAGATTGTT+AGG | - | chr3_2:17792129-17792148 | None:intergenic | 35.0% | |
| GACTTCATATGACTTAAGGA+TGG | - | chr3_2:17792404-17792423 | None:intergenic | 35.0% | |
| CAATTTGAGAGGGAGTTGTT+AGG | - | chr3_2:17789905-17789924 | None:intergenic | 40.0% | |
| GTAAGGTGTAAGAAGAGGAA+TGG | - | chr3_2:17790019-17790038 | None:intergenic | 40.0% | |
| GAGTAATAGAGGACAACATG+TGG | - | chr3_2:17790227-17790246 | None:intergenic | 40.0% | |
| ! | AGGACCTTTGAGAGTAATAG+AGG | - | chr3_2:17790238-17790257 | None:intergenic | 40.0% |
| TACTCTCAAAGGTCCTCTAA+AGG | + | chr3_2:17790242-17790261 | Msa0397790:CDS | 40.0% | |
| GCTCTTTAGTCCATATACCT+GGG | - | chr3_2:17790328-17790347 | None:intergenic | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr3_2:17790329-17790348 | None:intergenic | 40.0% | |
| ! | ATGGACTAAAGAGCAAGTTG+AGG | + | chr3_2:17790334-17790353 | Msa0397790:CDS | 40.0% |
| GCATGAACAGCATCTACAAT+AGG | - | chr3_2:17790368-17790387 | None:intergenic | 40.0% | |
| GTAGATGCTGTTCATGCTAA+AGG | + | chr3_2:17790371-17790390 | Msa0397790:CDS | 40.0% | |
| GACTTGTCGGTAGAAGATAT+CGG | - | chr3_2:17790857-17790876 | None:intergenic | 40.0% | |
| ! | ATTGCTTGTGAGTGACTTGT+CGG | - | chr3_2:17790870-17790889 | None:intergenic | 40.0% |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr3_2:17790968-17790987 | Msa0397790:CDS | 40.0% | |
| !! | TTTGATGGTGTCGAAATCCA+TGG | + | chr3_2:17791149-17791168 | Msa0397790:CDS | 40.0% |
| GAAATCGACAACGATTCTCA+AGG | - | chr3_2:17791247-17791266 | None:intergenic | 40.0% | |
| !! | GAATCGTTGTCGATTTCCTT+TGG | + | chr3_2:17791250-17791269 | Msa0397790:CDS | 40.0% |
| ACTGCTTCAACAACTTCCAA+AGG | - | chr3_2:17791269-17791288 | None:intergenic | 40.0% | |
| AGACTCTAATCCAAATGCGT+TGG | + | chr3_2:17791358-17791377 | Msa0397790:CDS | 40.0% | |
| GACTCTAATCCAAATGCGTT+GGG | + | chr3_2:17791359-17791378 | Msa0397790:CDS | 40.0% | |
| CCATTGAAAGCCTTTCTCAT+TGG | - | chr3_2:17791494-17791513 | None:intergenic | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+TGG | + | chr3_2:17791491-17791510 | Msa0397790:CDS | 40.0% | |
| AGGGCAGATCTTGTAGTTTA+TGG | + | chr3_2:17791575-17791594 | Msa0397790:CDS | 40.0% | |
| GCATTAAGTGCAAACCTCTT+TGG | - | chr3_2:17791629-17791648 | None:intergenic | 40.0% | |
| TACATTTCTGATCCGGTTGT+AGG | + | chr3_2:17791680-17791699 | Msa0397790:CDS | 40.0% | |
| TGATCCGGTTGTAGGTTATA+CGG | + | chr3_2:17791688-17791707 | Msa0397790:CDS | 40.0% | |
| TAGTCCGTATAACCTACAAC+CGG | - | chr3_2:17791695-17791714 | None:intergenic | 40.0% | |
| ! | TTCATACTAGCTTATCGGCT+AGG | + | chr3_2:17791870-17791889 | Msa0397790:three_prime_UTR | 40.0% |
| TTTGCAAACAAGCAATTGCC+AGG | - | chr3_2:17792253-17792272 | None:intergenic | 40.0% | |
| TGGTTGAGGAACATTGCCAT+AGG | - | chr3_2:17790207-17790226 | None:intergenic | 45.0% | |
| TAGAGGACAACATGTGGTTG+AGG | - | chr3_2:17790221-17790240 | None:intergenic | 45.0% | |
| ! | TCTCAAAGGTCCTCTAAAGG+TGG | + | chr3_2:17790245-17790264 | Msa0397790:CDS | 45.0% |
| CTTCTTATAGCCGAAGCTAC+TGG | + | chr3_2:17790269-17790288 | Msa0397790:CDS | 45.0% | |
| GTCGTCAACGACATCAAGAT+CGG | + | chr3_2:17790538-17790557 | Msa0397790:intron | 45.0% | |
| CTGGACCGTCCAATATTGAT+TGG | + | chr3_2:17790619-17790638 | Msa0397790:intron | 45.0% | |
| ! | TCAACAGGTTTTCAGCCGAA+TGG | + | chr3_2:17790824-17790843 | Msa0397790:intron | 45.0% |
| ! | GATATCGGTGCTTGTCCATT+CGG | - | chr3_2:17790842-17790861 | None:intergenic | 45.0% |
| TCATCTGTCCCAAGTCTTCT+CGG | - | chr3_2:17790914-17790933 | None:intergenic | 45.0% | |
| GACAGAACAGATGAATACGG+TGG | + | chr3_2:17791218-17791237 | Msa0397790:CDS | 45.0% | |
| GAGATAGGAGCCGATAAAGT+TGG | + | chr3_2:17791296-17791315 | Msa0397790:CDS | 45.0% | |
| TCATTGGCACAAGGCTGTAA+GGG | - | chr3_2:17791478-17791497 | None:intergenic | 45.0% | |
| AAGCCTTTCTCATTGGCACA+AGG | - | chr3_2:17791487-17791506 | None:intergenic | 45.0% | |
| GGCTTTCAATGGCACTTTCA+TGG | + | chr3_2:17791502-17791521 | Msa0397790:CDS | 45.0% | |
| CAATGGCACTTTCATGGTTG+CGG | + | chr3_2:17791508-17791527 | Msa0397790:CDS | 45.0% | |
| AATGGCACTTTCATGGTTGC+GGG | + | chr3_2:17791509-17791528 | Msa0397790:CDS | 45.0% | |
| CGAATCCAGATTTGCCAAAG+AGG | + | chr3_2:17791612-17791631 | Msa0397790:CDS | 45.0% | |
| GCAAACCTCTTTGGCAAATC+TGG | - | chr3_2:17791620-17791639 | None:intergenic | 45.0% | |
| ATGCTGTACTGTAGCATCCA+AGG | + | chr3_2:17791738-17791757 | Msa0397790:three_prime_UTR | 45.0% | |
| TGTACTGTAGCATCCAAGGT+TGG | + | chr3_2:17791742-17791761 | Msa0397790:three_prime_UTR | 45.0% | |
| !! | CTTTGTGGTTGATAGGATCC+CGG | + | chr3_2:17791948-17791967 | Msa0397790:intron | 45.0% |
| !!! | TTTTTTATTTATATTCAAAT+TGG | - | chr3_2:17792461-17792480 | None:intergenic | 5.0% |
| GTCGGATACACCAGTAGCTT+CGG | - | chr3_2:17790282-17790301 | None:intergenic | 50.0% | |
| GTGTATCCGACACAGCTCAA+GGG | + | chr3_2:17790291-17790310 | Msa0397790:CDS | 50.0% | |
| TGGATACCCTTGAGCTGTGT+CGG | - | chr3_2:17790300-17790319 | None:intergenic | 50.0% | |
| ATCCAGACAGCCCAGGTATA+TGG | + | chr3_2:17790315-17790334 | Msa0397790:CDS | 50.0% | |
| ! | CTAAAGAGCAAGTTGAGGCG+TGG | + | chr3_2:17790339-17790358 | Msa0397790:CDS | 50.0% |
| GTCGAAATCCATGGAGCTCA+TGG | + | chr3_2:17791158-17791177 | Msa0397790:CDS | 50.0% | |
| CTCATTGGCACAAGGCTGTA+AGG | - | chr3_2:17791479-17791498 | None:intergenic | 50.0% | |
| ! | CAGCCTTGTGCCAATGAGAA+AGG | + | chr3_2:17791481-17791500 | Msa0397790:CDS | 50.0% |
| GGAGGCTATGACAGACAAGA+CGG | + | chr3_2:17791530-17791549 | Msa0397790:CDS | 50.0% | |
| GAGGCTATGACAGACAAGAC+GGG | + | chr3_2:17791531-17791550 | Msa0397790:CDS | 50.0% | |
| GTAGCATCCAAGGTTGGAAG+TGG | + | chr3_2:17791748-17791767 | Msa0397790:three_prime_UTR | 50.0% | |
| GAAGGTTCCACTTCCAACCT+TGG | - | chr3_2:17791758-17791777 | None:intergenic | 50.0% | |
| AATGCCACACAACTAGCACC+TGG | + | chr3_2:17792232-17792251 | Msa0397790:intron | 50.0% | |
| ATTGCCAGGTGCTAGTTGTG+TGG | - | chr3_2:17792239-17792258 | None:intergenic | 50.0% | |
| GGTGTATCCGACACAGCTCA+AGG | + | chr3_2:17790290-17790309 | Msa0397790:CDS | 55.0% | |
| GTCCATATACCTGGGCTGTC+TGG | - | chr3_2:17790320-17790339 | None:intergenic | 55.0% | |
| TTCTCGCCACCGAGAAGACT+TGG | + | chr3_2:17790902-17790921 | Msa0397790:CDS | 55.0% | |
| TCTCGCCACCGAGAAGACTT+GGG | + | chr3_2:17790903-17790922 | Msa0397790:CDS | 55.0% | |
| TCTGTCCCAAGTCTTCTCGG+TGG | - | chr3_2:17790911-17790930 | None:intergenic | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | - | chr3_2:17791169-17791188 | None:intergenic | 55.0% | |
| !! | CAAGGGTATCCAGACAGCCC+AGG | + | chr3_2:17790308-17790327 | Msa0397790:CDS | 60.0% |
| GGCACTTTCATGGTTGCGGG+AGG | + | chr3_2:17791512-17791531 | Msa0397790:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 17789881 | 17792508 | 17789881 | ID=Msa0397790;Name=Msa0397790 |
| chr3_2 | mRNA | 17789881 | 17792508 | 17789881 | ID=Msa0397790-mRNA-1;Parent=Msa0397790;Name=Msa0397790-mRNA-1;_AED=0.04;_eAED=0.04;_QI=110|1|1|1|0.75|0.6|5|304|363 |
| chr3_2 | exon | 17789881 | 17790067 | 17789881 | ID=Msa0397790-mRNA-1:exon:3991;Parent=Msa0397790-mRNA-1 |
| chr3_2 | exon | 17790172 | 17790443 | 17790172 | ID=Msa0397790-mRNA-1:exon:3992;Parent=Msa0397790-mRNA-1 |
| chr3_2 | exon | 17790831 | 17790989 | 17790831 | ID=Msa0397790-mRNA-1:exon:3993;Parent=Msa0397790-mRNA-1 |
| chr3_2 | exon | 17791147 | 17791928 | 17791147 | ID=Msa0397790-mRNA-1:exon:3994;Parent=Msa0397790-mRNA-1 |
| chr3_2 | exon | 17792403 | 17792508 | 17792403 | ID=Msa0397790-mRNA-1:exon:3995;Parent=Msa0397790-mRNA-1 |
| chr3_2 | five_prime_UTR | 17789881 | 17789990 | 17789881 | ID=Msa0397790-mRNA-1:five_prime_utr;Parent=Msa0397790-mRNA-1 |
| chr3_2 | CDS | 17789991 | 17790067 | 17789991 | ID=Msa0397790-mRNA-1:cds;Parent=Msa0397790-mRNA-1 |
| chr3_2 | CDS | 17790172 | 17790443 | 17790172 | ID=Msa0397790-mRNA-1:cds;Parent=Msa0397790-mRNA-1 |
| chr3_2 | CDS | 17790831 | 17790989 | 17790831 | ID=Msa0397790-mRNA-1:cds;Parent=Msa0397790-mRNA-1 |
| chr3_2 | CDS | 17791147 | 17791730 | 17791147 | ID=Msa0397790-mRNA-1:cds;Parent=Msa0397790-mRNA-1 |
| chr3_2 | three_prime_UTR | 17791731 | 17791928 | 17791731 | ID=Msa0397790-mRNA-1:three_prime_utr;Parent=Msa0397790-mRNA-1 |
| chr3_2 | three_prime_UTR | 17792403 | 17792508 | 17792403 | ID=Msa0397790-mRNA-1:three_prime_utr;Parent=Msa0397790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
