AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037720 MtrunA17_Chr1g0196661 91.556 225 19 0 225 449 1 225 9.56e-152 430
Msa0037720 MtrunA17_Chr1g0196661 77.578 223 49 1 7 229 1 222 2.53e-126 365
Msa0037720 MtrunA17_Chr1g0196691 94.009 217 13 0 1 217 20 236 2.30e-149 424
Msa0037720 MtrunA17_Chr1g0196691 79.730 222 44 1 224 444 25 246 9.59e-129 372
Msa0037720 MtrunA17_Chr1g0196721 87.442 215 27 0 228 442 3 217 1.11e-135 389
Msa0037720 MtrunA17_Chr1g0196721 80.288 208 40 1 10 217 3 209 1.67e-120 350
Msa0037720 MtrunA17_Chr1g0196711 81.778 225 41 0 225 449 1 225 4.21e-133 382
Msa0037720 MtrunA17_Chr1g0196711 74.439 223 56 1 7 229 1 222 6.07e-119 346
Msa0037720 MtrunA17_Chr4g0029341 69.302 215 66 0 227 441 4 218 1.44e-108 320
Msa0037720 MtrunA17_Chr4g0029341 64.115 209 74 1 9 217 4 211 4.32e-96 288
Msa0037720 MtrunA17_Chr1g0212301 48.131 214 108 2 225 436 1 213 4.37e-64 206
Msa0037720 MtrunA17_Chr1g0212301 43.868 212 117 2 7 217 1 211 2.11e-57 188
Msa0037720 MtrunA17_Chr1g0196771 50.000 212 103 2 225 435 1 210 1.27e-63 205
Msa0037720 MtrunA17_Chr1g0196771 45.972 211 112 1 7 217 1 209 1.67e-59 194
Msa0037720 MtrunA17_Chr3g0132581 46.667 210 108 2 225 432 1 208 1.26e-60 197
Msa0037720 MtrunA17_Chr3g0132581 43.318 217 116 4 7 220 1 213 1.65e-54 181
Msa0037720 MtrunA17_Chr4g0008791 42.667 225 122 3 226 449 6 224 1.07e-55 184
Msa0037720 MtrunA17_Chr4g0008791 40.909 220 125 3 8 226 6 221 2.22e-51 173
Msa0037720 MtrunA17_Chr5g0417011 41.743 218 123 2 226 439 6 223 2.86e-54 181
Msa0037720 MtrunA17_Chr5g0417011 40.654 214 120 4 8 216 6 217 2.24e-51 173
Msa0037720 MtrunA17_Chr7g0240631 43.636 220 118 4 228 445 8 223 2.92e-54 180
Msa0037720 MtrunA17_Chr7g0240631 41.148 209 118 3 10 217 8 212 2.68e-49 167
Msa0037720 MtrunA17_Chr6g0483141 42.222 225 126 3 225 448 1 222 8.30e-54 179
Msa0037720 MtrunA17_Chr6g0483141 41.232 211 121 2 7 217 1 208 1.84e-51 173
Msa0037720 MtrunA17_Chr7g0240641 44.091 220 117 4 228 445 8 223 2.08e-53 178
Msa0037720 MtrunA17_Chr7g0240641 42.105 209 116 3 10 217 8 212 1.04e-50 171
Msa0037720 MtrunA17_Chr4g0008781 43.243 222 122 3 221 441 2 220 2.10e-53 178
Msa0037720 MtrunA17_Chr4g0008781 41.935 217 121 3 9 224 8 220 1.50e-52 176
Msa0037720 MtrunA17_Chr8g0379581 43.602 211 117 1 227 437 5 213 7.87e-53 177
Msa0037720 MtrunA17_Chr8g0379581 40.758 211 118 3 9 217 5 210 1.08e-45 158
Msa0037720 MtrunA17_Chr2g0312771 43.981 216 116 3 227 441 4 215 2.04e-52 175
Msa0037720 MtrunA17_Chr2g0312771 41.038 212 115 6 9 217 4 208 2.22e-42 149
Msa0037720 MtrunA17_Chr7g0240681 43.578 218 118 2 227 442 7 221 2.04e-52 176
Msa0037720 MtrunA17_Chr7g0240681 42.654 211 115 3 9 217 7 213 1.33e-50 171
Msa0037720 MtrunA17_Chr7g0240511 43.891 221 115 4 227 446 7 219 2.74e-52 175
Msa0037720 MtrunA17_Chr7g0240511 40.724 221 123 3 9 229 7 219 1.81e-47 162
Msa0037720 MtrunA17_Chr2g0312751 44.286 210 112 3 227 435 4 209 7.76e-52 174
Msa0037720 MtrunA17_Chr2g0312751 40.476 210 119 5 9 217 4 208 2.91e-41 146
Msa0037720 MtrunA17_Chr7g0240691 43.318 217 116 4 224 437 34 246 7.78e-52 175
Msa0037720 MtrunA17_Chr7g0240691 40.553 217 117 3 6 217 34 243 1.78e-49 169
Msa0037720 MtrunA17_Chr2g0312721 44.076 211 113 3 227 436 4 210 4.65e-51 172
Msa0037720 MtrunA17_Chr2g0312721 39.904 208 117 5 9 214 4 205 2.62e-43 151
Msa0037720 MtrunA17_Chr8g0379561 42.009 219 125 1 227 445 6 222 1.04e-50 171
Msa0037720 MtrunA17_Chr8g0379561 41.148 209 120 2 9 217 6 211 2.24e-44 154
Msa0037720 MtrunA17_Chr7g0240561 41.892 222 123 4 227 446 7 224 1.27e-50 171
Msa0037720 MtrunA17_Chr7g0240561 40.566 212 117 4 9 217 7 212 9.57e-47 160
Msa0037720 MtrunA17_Chr2g0312731 41.748 206 115 3 227 431 4 205 5.04e-50 169
Msa0037720 MtrunA17_Chr2g0312731 38.835 206 120 5 9 213 4 204 7.00e-41 145
Msa0037720 MtrunA17_Chr7g0240611 41.071 224 124 3 223 445 3 219 8.43e-50 169
Msa0037720 MtrunA17_Chr7g0240611 40.367 218 123 2 9 226 7 217 1.36e-48 166
Msa0037720 MtrunA17_Chr7g0240671 43.333 210 111 3 228 436 5 207 1.62e-49 168
Msa0037720 MtrunA17_Chr7g0240671 44.231 208 109 3 10 217 5 205 8.59e-49 166
Msa0037720 MtrunA17_Chr2g0312811 41.509 212 117 4 227 435 4 211 8.01e-49 166
Msa0037720 MtrunA17_Chr2g0312811 36.449 214 124 6 9 217 4 210 3.82e-38 138
Msa0037720 MtrunA17_Chr7g0240581 41.176 221 124 4 228 446 8 224 8.76e-49 166
Msa0037720 MtrunA17_Chr7g0240581 39.423 208 123 1 10 217 8 212 6.11e-45 156
Msa0037720 MtrunA17_Chr2g0312791 42.922 219 118 5 227 442 4 218 9.80e-49 166
Msa0037720 MtrunA17_Chr2g0312791 41.791 201 110 6 9 207 4 199 3.97e-43 151
Msa0037720 MtrunA17_Chr2g0312781 42.718 206 113 3 227 431 21 222 2.94e-48 165
Msa0037720 MtrunA17_Chr2g0312781 39.801 201 111 6 16 213 28 221 1.25e-39 142
Msa0037720 MtrunA17_Chr5g0415411 41.589 214 119 3 227 434 5 218 1.05e-47 163
Msa0037720 MtrunA17_Chr5g0415411 39.819 221 114 5 9 217 5 218 1.94e-44 155
Msa0037720 MtrunA17_Chr8g0363751 43.172 227 121 5 226 445 4 229 1.06e-47 164
Msa0037720 MtrunA17_Chr8g0363751 40.529 227 120 8 8 224 4 225 1.21e-43 153
Msa0037720 MtrunA17_Chr7g0240551 40.465 215 124 2 227 440 7 218 3.56e-47 162
Msa0037720 MtrunA17_Chr7g0240551 39.713 209 123 1 9 217 7 212 3.11e-44 154
Msa0037720 MtrunA17_Chr7g0240541 40.741 216 124 2 227 441 7 219 1.46e-46 160
Msa0037720 MtrunA17_Chr7g0240541 40.191 209 122 1 9 217 7 212 2.23e-43 152
Msa0037720 MtrunA17_Chr7g0240531 40.278 216 125 2 227 441 7 219 8.20e-45 155
Msa0037720 MtrunA17_Chr7g0240531 38.278 209 126 1 9 217 7 212 1.21e-40 144
Msa0037720 MtrunA17_Chr2g0312681 41.784 213 119 3 227 438 4 212 2.31e-43 152
Msa0037720 MtrunA17_Chr2g0312681 38.571 210 115 6 9 213 4 204 2.69e-36 133
Msa0037720 MtrunA17_Chr7g0240661 43.810 210 110 3 227 435 7 209 3.20e-43 151
Msa0037720 MtrunA17_Chr7g0240661 43.689 206 107 3 9 212 7 205 4.87e-42 148
Msa0037720 MtrunA17_Chr7g0240521 40.773 233 131 5 217 446 4 232 3.60e-43 151
Msa0037720 MtrunA17_Chr7g0240521 38.565 223 131 4 9 229 14 232 1.59e-41 147
Msa0037720 MtrunA17_Chr3g0107731 39.524 210 122 3 226 434 8 213 1.04e-42 150
Msa0037720 MtrunA17_Chr3g0107731 41.111 180 100 5 16 194 16 190 3.42e-34 127
Msa0037720 MtrunA17_Chr7g0240651 41.096 219 121 3 227 444 7 218 2.56e-42 149
Msa0037720 MtrunA17_Chr7g0240651 40.000 220 121 4 9 226 7 217 4.41e-42 148
Msa0037720 MtrunA17_Chr3g0107741 39.904 208 120 3 228 434 10 213 3.77e-42 149
Msa0037720 MtrunA17_Chr3g0107741 41.209 182 97 6 16 194 16 190 4.06e-35 130
Msa0037720 MtrunA17_Chr8g0357241 40.887 203 115 4 234 435 11 209 1.50e-40 144
Msa0037720 MtrunA17_Chr8g0357241 38.914 221 119 7 9 224 4 213 6.68e-36 132
Msa0037720 MtrunA17_Chr4g0069471 45.714 175 91 3 227 399 25 197 5.11e-40 142
Msa0037720 MtrunA17_Chr4g0069471 41.573 178 95 6 9 182 25 197 5.40e-33 124
Msa0037720 MtrunA17_Chr2g0312691 40.845 213 121 3 227 438 4 212 1.41e-39 142
Msa0037720 MtrunA17_Chr2g0312691 36.408 206 125 4 9 213 4 204 6.89e-34 126
Msa0037720 MtrunA17_Chr8g0357211 39.409 203 118 3 234 435 11 209 2.74e-39 141
Msa0037720 MtrunA17_Chr8g0357211 37.387 222 123 7 9 225 4 214 3.50e-34 127
Msa0037720 MtrunA17_Chr2g0312711 40.092 217 116 5 227 438 4 211 2.50e-37 135
Msa0037720 MtrunA17_Chr2g0312711 36.771 223 124 6 9 226 4 214 4.72e-35 129
Msa0037720 MtrunA17_Chr8g0391631 48.101 158 74 5 225 375 19 175 3.34e-36 131
Msa0037720 MtrunA17_Chr8g0391631 42.593 162 82 7 5 158 17 175 8.84e-33 122
Msa0037720 MtrunA17_Chr5g0433801 37.255 204 123 3 233 435 12 211 5.50e-36 132
Msa0037720 MtrunA17_Chr5g0433801 44.000 150 76 5 16 162 13 157 2.24e-29 114
Msa0037720 MtrunA17_Chr2g0313561 64.286 56 19 1 53 107 2 57 4.43e-19 81.3
Msa0037720 MtrunA17_Chr2g0313561 61.017 59 22 1 271 328 2 60 1.15e-18 80.1
Msa0037720 MtrunA17_Chr5g0415421 47.297 74 36 1 251 321 11 84 1.20e-13 67.8
Msa0037720 MtrunA17_Chr5g0415421 43.056 72 38 1 35 103 13 84 5.28e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037720 AT2G29420.1 43.056 216 121 1 227 442 9 222 2.03e-54 181
Msa0037720 AT2G29420.1 37.387 222 133 3 9 230 9 224 4.31e-45 157
Msa0037720 AT3G09270.1 45.205 219 116 3 228 444 7 223 2.23e-54 181
Msa0037720 AT3G09270.1 46.190 210 106 6 10 216 7 212 1.40e-49 169
Msa0037720 AT2G29460.1 39.726 219 129 2 227 444 7 223 1.49e-52 176
Msa0037720 AT2G29460.1 36.652 221 136 4 6 225 4 221 7.81e-44 153
Msa0037720 AT2G29470.1 40.455 220 127 3 228 445 8 225 2.45e-52 176
Msa0037720 AT2G29470.1 39.189 222 128 5 10 228 8 225 6.73e-50 169
Msa0037720 AT2G29450.1 42.291 227 121 4 223 444 2 223 8.41e-52 174
Msa0037720 AT2G29450.1 39.545 220 126 4 9 225 6 221 1.09e-46 161
Msa0037720 AT2G29490.1 40.183 219 128 2 228 445 8 224 1.36e-49 169
Msa0037720 AT2G29490.1 40.291 206 117 4 10 213 8 209 2.57e-46 160
Msa0037720 AT2G29440.1 41.256 223 122 4 227 445 6 223 1.71e-49 168
Msa0037720 AT2G29440.1 37.500 224 130 6 6 225 3 220 5.66e-41 146
Msa0037720 AT2G29480.1 40.183 219 128 2 228 445 8 224 1.98e-49 168
Msa0037720 AT2G29480.1 36.321 212 129 4 6 215 4 211 4.67e-40 143
Msa0037720 AT1G10370.1 42.411 224 124 3 226 444 4 227 2.12e-49 168
Msa0037720 AT1G10370.1 40.741 216 120 4 8 217 4 217 9.97e-47 161
Msa0037720 AT1G59670.1 40.969 227 128 4 227 447 6 232 2.51e-49 168
Msa0037720 AT1G59670.1 44.162 197 101 6 9 198 6 200 1.70e-44 155
Msa0037720 AT1G78340.1 42.584 209 115 3 227 434 4 208 3.23e-47 162
Msa0037720 AT1G78340.1 42.938 177 93 5 9 182 4 175 4.93e-40 143
Msa0037720 AT1G59700.1 41.485 229 126 5 227 449 6 232 4.73e-47 162
Msa0037720 AT1G59700.1 39.910 223 125 6 9 224 6 226 5.43e-43 151
Msa0037720 AT1G78370.1 41.748 206 115 4 230 434 7 208 9.89e-47 161
Msa0037720 AT1G78370.1 40.394 203 115 6 16 217 11 208 9.36e-42 147
Msa0037720 AT1G17180.1 39.631 217 126 3 227 442 4 216 1.92e-46 160
Msa0037720 AT1G17180.1 38.208 212 121 6 9 217 4 208 1.40e-39 142
Msa0037720 AT1G10360.1 42.411 224 122 4 227 444 5 227 3.92e-46 159
Msa0037720 AT1G10360.1 39.815 216 120 4 9 217 5 217 6.26e-41 146
Msa0037720 AT1G78380.1 42.130 216 120 4 227 441 4 215 3.72e-45 157
Msa0037720 AT1G78380.1 37.264 212 123 6 9 217 4 208 1.86e-35 131
Msa0037720 AT1G78320.1 40.580 207 118 3 227 432 4 206 9.87e-45 155
Msa0037720 AT1G78320.1 41.799 189 100 6 9 194 4 185 1.32e-38 139
Msa0037720 AT5G62480.1 37.156 218 130 2 227 437 8 225 4.22e-44 155
Msa0037720 AT5G62480.1 36.916 214 121 5 12 215 11 220 1.59e-42 150
Msa0037720 AT1G17170.1 41.706 211 117 5 227 436 4 209 4.85e-44 154
Msa0037720 AT1G17170.1 37.900 219 129 6 9 226 4 216 2.99e-39 141
Msa0037720 AT1G74590.1 35.498 231 146 2 222 449 2 232 7.39e-44 154
Msa0037720 AT1G74590.1 35.185 216 134 5 6 217 4 217 8.99e-37 135
Msa0037720 AT1G78360.1 39.535 215 124 4 226 438 3 213 8.90e-42 148
Msa0037720 AT1G78360.1 35.849 212 129 5 8 217 3 209 1.40e-34 129
Msa0037720 AT1G69930.1 40.284 211 122 3 228 434 13 223 2.04e-41 147
Msa0037720 AT1G69930.1 38.028 213 125 4 10 217 13 223 3.66e-39 141
Msa0037720 AT1G27130.1 40.845 213 120 4 228 434 7 219 3.35e-41 146
Msa0037720 AT1G27130.1 38.967 213 125 3 10 217 7 219 2.28e-39 142
Msa0037720 AT1G17190.1 35.455 220 137 3 227 445 5 220 1.17e-40 145
Msa0037720 AT1G17190.1 36.585 205 120 6 16 217 12 209 4.19e-36 133
Msa0037720 AT3G43800.1 37.615 218 129 4 227 440 5 219 1.27e-38 140
Msa0037720 AT3G43800.1 36.052 233 133 8 9 236 5 226 3.53e-34 128
Msa0037720 AT1G53680.1 38.614 202 117 4 233 431 13 210 1.68e-38 139
Msa0037720 AT1G53680.1 37.745 204 113 7 16 213 14 209 9.11e-34 127
Msa0037720 AT1G27140.1 39.819 221 126 4 228 441 7 227 2.45e-38 139
Msa0037720 AT1G27140.1 40.394 203 113 5 10 205 7 208 5.76e-36 133
Msa0037720 AT1G69920.1 38.967 213 124 4 228 434 35 247 2.29e-37 137
Msa0037720 AT1G69920.1 36.697 218 123 6 10 217 35 247 3.38e-36 134
Msa0037720 AT5G62480.3 30.415 217 119 2 227 437 8 198 2.00e-28 112
Msa0037720 AT5G62480.3 29.384 211 114 4 12 215 11 193 7.63e-27 107
Msa0037720 AT5G62480.2 30.415 217 120 2 227 437 8 199 2.89e-28 111
Msa0037720 AT5G62480.2 29.384 211 115 4 12 215 11 194 8.14e-27 107
Msa0037720 AT1G78320.2 33.010 206 108 3 227 432 4 179 8.30e-28 109
Msa0037720 AT1G78320.2 32.979 188 91 6 9 194 4 158 3.50e-20 88.6

Find 104 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCCCTCGATTGCATTTA+TGG 0.096900 1_1:-66836798 Msa0037720:CDS
GGTATAGCCCTTTCACTTTA+AGG 0.144203 1_1:-66845083 Msa0037720:CDS
ACAGAGCTCAAGCAAGATTT+TGG 0.157759 1_1:-66844846 Msa0037720:CDS
TGATATACCCTTCAAATTTA+AGG 0.160395 1_1:+66837946 None:intergenic
ACAGAGCTCAAGCCCGATTT+TGG 0.174441 1_1:-66837742 Msa0037720:CDS
AGAAGGCCAGAGAGAATTTA+TGG 0.204560 1_1:-66836978 Msa0037720:CDS
AGCTATGTCTACAATGTTAA+TGG 0.243167 1_1:+66843807 None:intergenic
GCATCTTCTTGAGAAAATTA+TGG 0.268793 1_1:-66836670 Msa0037720:exon
GCACTCCTCTATAGCAAAAT+TGG 0.275055 1_1:-66837012 Msa0037720:CDS
AATGATCAGAATAAGTTCTA+TGG 0.275936 1_1:-66843838 Msa0037720:CDS
CATACTACCCTTAAAGTAAA+AGG 0.285985 1_1:+66837971 None:intergenic
AAAGTCCAGGGATAATTTAT+TGG 0.296970 1_1:-66843893 Msa0037720:CDS
AGCTATGTCTACAATGTTAA+TGG 0.297246 1_1:+66836891 None:intergenic
AGGTGAAACTACATGGATTT+TGG 0.302285 1_1:-66838000 Msa0037720:CDS
GTATAGCCCTTTCACTTTAA+GGG 0.310873 1_1:-66845082 Msa0037720:CDS
TCCACCTAAACAGAGGTATT+TGG 0.321002 1_1:-66836414 Msa0037720:three_prime_UTR
TGTACCAAATACCTCTGTTT+AGG 0.340791 1_1:+66836410 None:intergenic
ACAAAGCATTTGTATCTTCA+TGG 0.352326 1_1:-66836630 Msa0037720:three_prime_UTR
CAACATATTTAACCCAAAAT+CGG 0.352973 1_1:+66837729 None:intergenic
CGATGGAACGCCACAATTGC+CGG 0.355415 1_1:+66843943 None:intergenic
TTCCATCGAAGCATAATTAA+AGG 0.356302 1_1:-66843928 Msa0037720:CDS
GCCACCAACTTCTCTTGGTC+AGG 0.366758 1_1:+66836733 None:intergenic
AGGTGGAGAACAAAATTATA+AGG 0.378381 1_1:+66836430 None:intergenic
TTGAATACATTGATGAGATA+TGG 0.380718 1_1:-66844903 Msa0037720:CDS
TCGGGCTTGAGCTCTGTCAT+AGG 0.384467 1_1:+66837748 None:intergenic
ACTGGAGTCTTCTTGTGTAT+TGG 0.392101 1_1:+66844970 None:intergenic
AATGATCATGGACTCACATA+TGG 0.394155 1_1:+66837823 None:intergenic
GGTTAAATATGTTGATGAAT+TGG 0.403400 1_1:-66837720 Msa0037720:intron
AGTTATTGAAGATAAGTGTT+TGG 0.410970 1_1:-66836944 Msa0037720:CDS
CTTGCTTGAGCTCTGTCATA+TGG 0.416587 1_1:+66844853 None:intergenic
AACATATTTAACCCAAAATC+GGG 0.426033 1_1:+66837730 None:intergenic
TAGAGGAAGATCACTTCAAT+AGG 0.428981 1_1:-66845017 Msa0037720:CDS
CTTTCACTTTAAGGGTGGTA+TGG 0.431843 1_1:-66845074 Msa0037720:CDS
AACATTGTAGACATAGCTCT+TGG 0.450264 1_1:-66836886 Msa0037720:CDS
AACATTGTAGACATAGCTCT+TGG 0.450264 1_1:-66843802 Msa0037720:CDS
CTTGAAGTTTCCGGCAATTG+TGG 0.451600 1_1:-66843953 Msa0037720:intron
CACCTTTAATTATGCTTCGA+TGG 0.459821 1_1:+66843926 None:intergenic
TTCAATTAGAGAATTAAGAA+AGG 0.461738 1_1:+66836711 None:intergenic
GCTCTGTCATAGGGATCAAC+AGG 0.468867 1_1:+66837758 None:intergenic
GAAAGGCCACCAACTTCTCT+TGG 0.471563 1_1:+66836728 None:intergenic
AGATAAAACTACATGGATCT+TGG 0.472943 1_1:-66845104 Msa0037720:CDS
ATAATCATGGACTCACATAT+AGG 0.473284 1_1:+66844928 None:intergenic
AGTATGGACCTTAAATTTGA+AGG 0.474244 1_1:-66837954 Msa0037720:CDS
TTTATGGTTTAATAATTTCA+AGG 0.475281 1_1:-66843698 Msa0037720:CDS
GTGAAGAGCGGGAAAAGTCC+AGG 0.476986 1_1:-66843906 Msa0037720:CDS
AATGTATTCAACAATAATCA+TGG 0.478690 1_1:+66844915 None:intergenic
AATGTATTCAACAATGATCA+TGG 0.484642 1_1:+66837811 None:intergenic
ATGATCAGAATAAGTTCTAT+GGG 0.489286 1_1:-66843837 Msa0037720:CDS
GAAGGCCAGAGAGAATTTAT+GGG 0.489428 1_1:-66836977 Msa0037720:CDS
TCTTCCTCTATACTGTCATA+TGG 0.498568 1_1:+66845030 None:intergenic
CATAATTAAAGGTGAAGAGC+GGG 0.504869 1_1:-66843917 Msa0037720:CDS
CACCCCTGACCAAGAGAAGT+TGG 0.508213 1_1:-66836737 Msa0037720:CDS
CAAAGCATTTGTATCTTCAT+GGG 0.509542 1_1:-66836629 Msa0037720:three_prime_UTR
ATTAAACCATAAATGCAAGC+GGG 0.510641 1_1:+66843708 None:intergenic
TCGCTCCCATAAATTCTCTC+TGG 0.520342 1_1:+66836972 None:intergenic
CATGCACAAGCTAATTAAGA+TGG 0.520586 1_1:-66845130 Msa0037720:CDS
TTTCCATCATGAACTAGCAC+TGG 0.520703 1_1:+66837848 None:intergenic
TTTCCATCATGAACCAGCAC+TGG 0.520744 1_1:+66844952 None:intergenic
GGATTATATTGAAGAAGTTG+AGG 0.529265 1_1:+66844991 None:intergenic
ATGATCATGGACTCACATAT+GGG 0.533497 1_1:+66837824 None:intergenic
CGGGCTTGAGCTCTGTCATA+GGG 0.535527 1_1:+66837749 None:intergenic
CTCTGAGCAAGAGAAGTTTG+TGG 0.536542 1_1:-66843650 Msa0037720:CDS
GCTCTGTCATATGGATCAGC+AGG 0.539671 1_1:+66844862 None:intergenic
GATGTGGTCACACAACTCAT+TGG 0.539768 1_1:-66837783 Msa0037720:CDS
CATACCACCCTTAAAGTGAA+AGG 0.544844 1_1:+66845075 None:intergenic
CCACCAACTTCTCTTGGTCA+GGG 0.547093 1_1:+66836734 None:intergenic
TCGCTCCAATAAATTATCCC+TGG 0.548240 1_1:+66843888 None:intergenic
TTTACAGATTTCGGCAATTG+CGG 0.548298 1_1:-66837034 Msa0037720:intron
GTATGGACCTTAAATTTGAA+GGG 0.551809 1_1:-66837953 Msa0037720:CDS
ATGGCAGAGGTGAAACTACA+TGG 0.553227 1_1:-66838007 Msa0037720:CDS
GGAGCGACTCGGAGTTGTTG+AGG 0.560264 1_1:-66843872 Msa0037720:CDS
ACTCCAGTGCTAGTTCATGA+TGG 0.566801 1_1:-66837851 Msa0037720:CDS
CACCAACTTCTCTTGGTCAG+GGG 0.567960 1_1:+66836735 None:intergenic
ACTCCAGTGCTGGTTCATGA+TGG 0.570563 1_1:-66844955 Msa0037720:CDS
TAACACAACACAAGCTAGGA+TGG 0.571188 1_1:-66838026 Msa0037720:CDS
ACCAAATACCTCTGTTTAGG+TGG 0.571738 1_1:+66836413 None:intergenic
ATACCACCCTTAAAGTGAAA+GGG 0.572861 1_1:+66845076 None:intergenic
GATAATTTATTGGAGCGACT+CGG 0.578052 1_1:-66843883 Msa0037720:CDS
GGTATGGACTCTAAATCTGA+AGG 0.579905 1_1:-66845058 Msa0037720:CDS
TATACCATATGACAGTATAG+AGG 0.581306 1_1:-66845034 Msa0037720:CDS
AGGATAACACAACACAAGCT+AGG 0.581614 1_1:-66838030 Msa0037720:CDS
TTAAACCATAAATGCAATCG+AGG 0.585366 1_1:+66836793 None:intergenic
ACACAAGAAGACTCCAGTGC+TGG 0.585534 1_1:-66844965 Msa0037720:CDS
TTAAACCATAAATGCAAGCG+GGG 0.603941 1_1:+66843709 None:intergenic
GGGTTATATTGAAGAAGCAG+AGG 0.607257 1_1:+66837887 None:intergenic
TAGCCCTTTCACTTTAAGGG+TGG 0.610464 1_1:-66845079 Msa0037720:CDS
TATTAAACCATAAATGCAAG+CGG 0.610901 1_1:+66843707 None:intergenic
CCCTGACCAAGAGAAGTTGG+TGG 0.614205 1_1:-66836734 Msa0037720:CDS
GGTTAAATATGTTGATGACA+TGG 0.614212 1_1:-66844824 Msa0037720:intron
GTATGGACTCTAAATCTGAA+GGG 0.617910 1_1:-66845057 Msa0037720:CDS
TAAACCATAAATGCAATCGA+GGG 0.618785 1_1:+66836794 None:intergenic
ATGGCAGAGATAAAACTACA+TGG 0.623570 1_1:-66845111 Msa0037720:CDS
TTGAATACATTGATGAGATG+TGG 0.630251 1_1:-66837799 Msa0037720:CDS
AATTGGTGAAGAGCGAGAGA+AGG 0.634346 1_1:-66836995 Msa0037720:CDS
CACAAACTTCTCTTGCTCAG+AGG 0.635555 1_1:+66843651 None:intergenic
TTTGTTCTCCACCTAAACAG+AGG 0.645358 1_1:-66836421 Msa0037720:three_prime_UTR
TGAAGAGCGGGAAAAGTCCA+GGG 0.655285 1_1:-66843905 Msa0037720:CDS
TATATCATATGAGAACATAG+AGG 0.662566 1_1:-66837930 Msa0037720:CDS
AACACAAGCTAGGATGGCAG+AGG 0.663463 1_1:-66838020 Msa0037720:CDS
GCATAATTAAAGGTGAAGAG+CGG 0.664372 1_1:-66843918 Msa0037720:CDS
TAAACCATAAATGCAAGCGG+GGG 0.664553 1_1:+66843710 None:intergenic
GCAGGAAGCAATGAGTTGTG+TGG 0.667285 1_1:+66844880 None:intergenic
TGATCAGAATAAGTTCTATG+GGG 0.669740 1_1:-66843836 Msa0037720:CDS
GATCAGAATAAGTTCTATGG+GGG 0.670673 1_1:-66843835 Msa0037720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTATAATTTTTTTT+GGG + chr1_1:66843282-66843301 None:intergenic 0.0%
!!! ATTTTTTTTATAATTTTTTT+TGG + chr1_1:66843283-66843302 None:intergenic 0.0%
!! AAAAAAAAAAAAATTTGTCT+AGG - chr1_1:66838907-66838926 Msa0037720:intron 10.0%
!!! ATTTTCTATTTAATGAAAAA+TGG + chr1_1:66841434-66841453 None:intergenic 10.0%
!!! TCATATATTTATTATTTTGA+CGG + chr1_1:66842271-66842290 None:intergenic 10.0%
!!! AAATCTTTTTTTTTTTTAGA+AGG - chr1_1:66843068-66843087 Msa0037720:intron 10.0%
!!! AGGATTTAATTTAATTTTAT+AGG - chr1_1:66843966-66843985 Msa0037720:intron 10.0%
!!! TTTATGGTTTAATAATTTTA+AGG - chr1_1:66844740-66844759 Msa0037720:intron 10.0%
!! TTTATGTTTAAAAACTTCAT+TGG + chr1_1:66837188-66837207 None:intergenic 15.0%
!!! CTCAATTTAAAGTTTTAAAA+AGG + chr1_1:66837246-66837265 None:intergenic 15.0%
!! AAAACTTTAAATTGAGTTAA+AGG - chr1_1:66837282-66837301 Msa0037720:intron 15.0%
!! TCTTGAATATAGTTATAAAT+AGG + chr1_1:66837326-66837345 None:intergenic 15.0%
!! ATTCAAACTAACAATAATAT+TGG - chr1_1:66837538-66837557 Msa0037720:intron 15.0%
!! TTCAAACTAACAATAATATT+GGG - chr1_1:66837539-66837558 Msa0037720:intron 15.0%
!! TTTATGGTTTAATAATTTCA+AGG - chr1_1:66837824-66837843 Msa0037720:CDS 15.0%
!! TATTAAGTATTAATTTATGG+TGG + chr1_1:66838014-66838033 None:intergenic 15.0%
!!! TTTTTTTTTGAAGTAATTCT+TGG + chr1_1:66838896-66838915 None:intergenic 15.0%
!! AAGTTAGATAATTATTTGTA+TGG + chr1_1:66839132-66839151 None:intergenic 15.0%
!! ATTTATCCTTAATGTATTTA+GGG - chr1_1:66840941-66840960 Msa0037720:intron 15.0%
!! CATGTTAAAGTATATATTAA+TGG - chr1_1:66842516-66842535 Msa0037720:intron 15.0%
!! ACTAAAAATAGTCTTTAAAT+AGG + chr1_1:66842543-66842562 None:intergenic 15.0%
!!! TATTTTTAGTTTAGTACAAT+TGG - chr1_1:66842553-66842572 Msa0037720:intron 15.0%
!!! GCATTATTATTTTTTCTTTT+TGG + chr1_1:66842978-66842997 None:intergenic 15.0%
!! AAAAGAAAAAATAATAATGC+TGG - chr1_1:66842978-66842997 Msa0037720:intron 15.0%
!! AAAATTAAATTAAATCCTCA+TGG + chr1_1:66843964-66843983 None:intergenic 15.0%
!! ATGTAATTTATCTTTATGAA+TGG - chr1_1:66844186-66844205 Msa0037720:intron 15.0%
!!! ATGATCAAAAGAAATTTTAT+GGG - chr1_1:66844601-66844620 Msa0037720:intron 15.0%
!!! ATCTTTTATCAAATTTATTG+AGG - chr1_1:66844659-66844678 Msa0037720:intron 15.0%
!! AATGTATTCAACAATAATCA+TGG + chr1_1:66836610-66836629 None:intergenic 20.0%
!!! ATTTAAGTTAAATGACTTCT+GGG + chr1_1:66836828-66836847 None:intergenic 20.0%
!! ATGTAATTTATCTCTTTGAA+TGG - chr1_1:66837108-66837127 Msa0037720:intron 20.0%
!!! CCAATAATTTTCAATAGTAA+GGG + chr1_1:66837453-66837472 None:intergenic 20.0%
!!! TCCAATAATTTTCAATAGTA+AGG + chr1_1:66837454-66837473 None:intergenic 20.0%
!! AGTAATGTTTATAAGATAGA+AGG + chr1_1:66837496-66837515 None:intergenic 20.0%
!!! ATCTTTTGTGAAATTTATTG+AGG - chr1_1:66837743-66837762 Msa0037720:CDS 20.0%
!! GACATATAATTAAACGTAAA+AGG + chr1_1:66838228-66838247 None:intergenic 20.0%
!! ATTAAGAATCGTTATTACAA+TGG + chr1_1:66838259-66838278 None:intergenic 20.0%
!! AGTAACATATTGTACTTAAA+TGG + chr1_1:66838541-66838560 None:intergenic 20.0%
!! AATATATGATTGCAAGTTTA+CGG - chr1_1:66838785-66838804 Msa0037720:intron 20.0%
!! TCTAAAAATTAAGAACTAGT+GGG + chr1_1:66839725-66839744 None:intergenic 20.0%
!!! TTCTAAAAATTAAGAACTAG+TGG + chr1_1:66839726-66839745 None:intergenic 20.0%
!!! ACTAGTTCTTAATTTTTAGA+AGG - chr1_1:66839725-66839744 Msa0037720:intron 20.0%
!!! CTAGTTCTTAATTTTTAGAA+GGG - chr1_1:66839726-66839745 Msa0037720:intron 20.0%
!!! AAAATTTTTGTTCTTAGACT+TGG - chr1_1:66840055-66840074 Msa0037720:intron 20.0%
!!! AAATTTTTGTTCTTAGACTT+GGG - chr1_1:66840056-66840075 Msa0037720:intron 20.0%
!!! TCTGATTTATATGAACTTTT+TGG - chr1_1:66840263-66840282 Msa0037720:intron 20.0%
!! ATTGTCTAATTATATAACGT+TGG - chr1_1:66840314-66840333 Msa0037720:intron 20.0%
!!! AGTTTAATTTTTGAGTAACT+TGG + chr1_1:66840348-66840367 None:intergenic 20.0%
!! TAACAAGAATTACCATAAAA+TGG + chr1_1:66840598-66840617 None:intergenic 20.0%
!!! TTGTTTTAAAATAACACGTA+AGG - chr1_1:66840618-66840637 Msa0037720:intron 20.0%
!!! TGTTTTAAAATAACACGTAA+GGG - chr1_1:66840619-66840638 Msa0037720:intron 20.0%
!! TACAAAATAGTAACAAAGAA+TGG + chr1_1:66840682-66840701 None:intergenic 20.0%
!!! TGTTACTATTTTGTAACAAA+TGG - chr1_1:66840687-66840706 Msa0037720:intron 20.0%
!! GATTTATCCTTAATGTATTT+AGG - chr1_1:66840940-66840959 Msa0037720:intron 20.0%
!!! TAATACCATATTAATTTGAG+TGG + chr1_1:66841297-66841316 None:intergenic 20.0%
!! GTATTATTACCATTCTATTA+TGG - chr1_1:66841311-66841330 Msa0037720:intron 20.0%
!! ACTAGTAAGTGTTTATATAT+GGG + chr1_1:66842008-66842027 None:intergenic 20.0%
!! AACTAGTAAGTGTTTATATA+TGG + chr1_1:66842009-66842028 None:intergenic 20.0%
!! ATATATAAACACTTACTAGT+TGG - chr1_1:66842008-66842027 Msa0037720:intron 20.0%
!! TATATAAACACTTACTAGTT+GGG - chr1_1:66842009-66842028 Msa0037720:intron 20.0%
!! TTAATTCTAGTGAAGAAAAT+TGG + chr1_1:66842104-66842123 None:intergenic 20.0%
!!! TACTGTTTTATTTATCGTTT+TGG + chr1_1:66842168-66842187 None:intergenic 20.0%
!! CAAATTAACAGATCTTTAAA+TGG + chr1_1:66842646-66842665 None:intergenic 20.0%
!! TCATATTACTACTATCATAA+AGG - chr1_1:66842808-66842827 Msa0037720:intron 20.0%
!!! ATTTTTTGCATATTCAGAAT+CGG + chr1_1:66842889-66842908 None:intergenic 20.0%
!!! TTTTTTTTTTAGAAGGATGA+AGG - chr1_1:66843075-66843094 Msa0037720:intron 20.0%
!! AAGAATGAAAGTTGAATTAA+CGG + chr1_1:66844002-66844021 None:intergenic 20.0%
!! TGAAACATTCTTAATAGTAT+AGG + chr1_1:66836951-66836970 None:intergenic 20.0%
!! CTTAATCTTAAGTATCAAAA+AGG + chr1_1:66844309-66844328 None:intergenic 20.0%
!! GATACTTAAGATTAAGTTAA+AGG - chr1_1:66844313-66844332 Msa0037720:intron 20.0%
!! AAATTAAGTTAAAGGATTCA+TGG - chr1_1:66844352-66844371 Msa0037720:intron 20.0%
!! GTAATAATTATAAGACACAA+GGG + chr1_1:66844413-66844432 None:intergenic 20.0%
!!! GATGATCAAAAGAAATTTTA+TGG - chr1_1:66844600-66844619 Msa0037720:intron 20.0%
!!! TGATCAAAAGAAATTTTATG+GGG - chr1_1:66844602-66844621 Msa0037720:intron 20.0%
!! TTCAATTAGAGAATTAAGAA+AGG + chr1_1:66844814-66844833 None:intergenic 20.0%
!!! AAATTATGGCTTTTATGAAT+TGG - chr1_1:66844866-66844885 Msa0037720:CDS 20.0%
!!! TTCTTTTAATGTTGAAAGTA+AGG - chr1_1:66845005-66845024 Msa0037720:CDS 20.0%
! TTGAATACATTGATGAGATA+TGG - chr1_1:66836619-66836638 Msa0037720:three_prime_UTR 25.0%
!! GATTTAAGTTAAATGACTTC+TGG + chr1_1:66836829-66836848 None:intergenic 25.0%
! GATAGATGACTAATTTGATT+TGG + chr1_1:66836864-66836883 None:intergenic 25.0%
! ATATATCATCATGTAGACAA+TGG + chr1_1:66836933-66836952 None:intergenic 25.0%
! CATAGATCAAAAATGAAGTT+TGG - chr1_1:66837155-66837174 Msa0037720:intron 25.0%
!! ATAATTTTCAATAGTAAGGG+AGG + chr1_1:66837450-66837469 None:intergenic 25.0%
! CCCTTACTATTGAAAATTAT+TGG - chr1_1:66837450-66837469 Msa0037720:intron 25.0%
!! TTAGTTTGAATCTAGATAGA+AGG + chr1_1:66837529-66837548 None:intergenic 25.0%
! AATGATCAGAATAAGTTCTA+TGG - chr1_1:66837684-66837703 Msa0037720:intron 25.0%
! ATGATCAGAATAAGTTCTAT+GGG - chr1_1:66837685-66837704 Msa0037720:intron 25.0%
! TATTAAACCATAAATGCAAG+CGG + chr1_1:66837818-66837837 None:intergenic 25.0%
! GCCTCTAATTGAAAAAATAA+TGG - chr1_1:66837905-66837924 Msa0037720:CDS 25.0%
!!! GCCATTATTTTTTCAATTAG+AGG + chr1_1:66837909-66837928 None:intergenic 25.0%
! ATGAAAAATTCTAATACGAC+TGG - chr1_1:66837975-66837994 Msa0037720:CDS 25.0%
! TATCTTCTTCTTCATATCAT+GGG - chr1_1:66838086-66838105 Msa0037720:intron 25.0%
! ACAAAATTGAGAAGATCTTA+AGG + chr1_1:66838827-66838846 None:intergenic 25.0%
!!! TTCTAGTTCAACATAAAAAG+AGG - chr1_1:66839215-66839234 Msa0037720:intron 25.0%
!!! TGTATTTGGATTTTGGAAAA+AGG + chr1_1:66839427-66839446 None:intergenic 25.0%
! TAAAGAAGTTATATCCTCAT+TGG + chr1_1:66839555-66839574 None:intergenic 25.0%
! ATGAGGATATAACTTCTTTA+AGG - chr1_1:66839555-66839574 Msa0037720:intron 25.0%
! TATGAACTTGGTTTATACAT+TGG + chr1_1:66839597-66839616 None:intergenic 25.0%
! TAAAAATTAAGAACTAGTGG+GGG + chr1_1:66839723-66839742 None:intergenic 25.0%
! CTAAAAATTAAGAACTAGTG+GGG + chr1_1:66839724-66839743 None:intergenic 25.0%
! CTATGATCACTTTAACATTT+AGG - chr1_1:66839862-66839881 Msa0037720:intron 25.0%
! CGATAAATAACGAAACATAT+AGG + chr1_1:66839896-66839915 None:intergenic 25.0%
!!! CTTGTCTTATTTTTGAACTT+GGG + chr1_1:66840002-66840021 None:intergenic 25.0%
!!! ACTTGTCTTATTTTTGAACT+TGG + chr1_1:66840003-66840022 None:intergenic 25.0%
! AGTTCAAAAATAAGACAAGT+TGG - chr1_1:66840003-66840022 Msa0037720:intron 25.0%
!! TTATTGATGATTGTGAACTT+TGG + chr1_1:66840146-66840165 None:intergenic 25.0%
! ATTACCCAACTTATATAGAA+AGG - chr1_1:66840405-66840424 Msa0037720:intron 25.0%
! TTACCCAACTTATATAGAAA+GGG - chr1_1:66840406-66840425 Msa0037720:intron 25.0%
! ATTCCCTTTCTATATAAGTT+GGG + chr1_1:66840412-66840431 None:intergenic 25.0%
! AATTCCCTTTCTATATAAGT+TGG + chr1_1:66840413-66840432 None:intergenic 25.0%
!! AATTTTGAACATGTCATCAA+AGG - chr1_1:66840434-66840453 Msa0037720:intron 25.0%
!! TGTAACAATCAAAACTTGTT+TGG - chr1_1:66840796-66840815 Msa0037720:intron 25.0%
!!! CGTCTTAAAATTGTTGTTTT+TGG - chr1_1:66841014-66841033 Msa0037720:intron 25.0%
! GATTTCCAAACTGTTAAATT+TGG - chr1_1:66841036-66841055 Msa0037720:intron 25.0%
! GAAATCCAAATTTAACAGTT+TGG + chr1_1:66841044-66841063 None:intergenic 25.0%
! TGAAACCACTCAAATTAATA+TGG - chr1_1:66841289-66841308 Msa0037720:intron 25.0%
!! AAAGAATTTCATTGAGTTGT+CGG + chr1_1:66841626-66841645 None:intergenic 25.0%
!! CAACTCAATGAAATTCTTTT+CGG - chr1_1:66841627-66841646 Msa0037720:intron 25.0%
! GTTTCTTAATTGGATATATC+CGG - chr1_1:66841756-66841775 Msa0037720:intron 25.0%
! ATATAAACACTTACTAGTTG+GGG - chr1_1:66842010-66842029 Msa0037720:intron 25.0%
!!! TTGACAAGACATTTTTTGTT+TGG - chr1_1:66842337-66842356 Msa0037720:intron 25.0%
! ATAATCACATAAACTTGAGA+CGG + chr1_1:66842456-66842475 None:intergenic 25.0%
! AGAAAAAATAATAATGCTGG+TGG - chr1_1:66842981-66843000 Msa0037720:intron 25.0%
! GAAAAAATAATAATGCTGGT+GGG - chr1_1:66842982-66843001 Msa0037720:intron 25.0%
! AAAAAATAATAATGCTGGTG+GGG - chr1_1:66842983-66843002 Msa0037720:intron 25.0%
! AACAAAATGAAACATTTGTG+TGG - chr1_1:66843006-66843025 Msa0037720:intron 25.0%
! ATGAAGGAAATCTTCTTATA+TGG - chr1_1:66843091-66843110 Msa0037720:intron 25.0%
! AAAAAAAATGCAACGTCATA+CGG - chr1_1:66843303-66843322 Msa0037720:intron 25.0%
!! GTATAGTCCTTTTACTTTAA+GGG - chr1_1:66843544-66843563 Msa0037720:intron 25.0%
! TGATATACCCTTCAAATTTA+AGG + chr1_1:66843579-66843598 None:intergenic 25.0%
! TATATCATATGAGAACATAG+AGG - chr1_1:66843592-66843611 Msa0037720:intron 25.0%
! AATGTATTCAACAATGATCA+TGG + chr1_1:66843714-66843733 None:intergenic 25.0%
! AACATATTTAACCCAAAATC+GGG + chr1_1:66836691-66836710 None:intergenic 25.0%
! CAACATATTTAACCCAAAAT+CGG + chr1_1:66836692-66836711 None:intergenic 25.0%
!! GGTTAAATATGTTGATGAAT+TGG - chr1_1:66843802-66843821 Msa0037720:CDS 25.0%
!! GAATGGTTAAGTATAACTTT+TGG - chr1_1:66844203-66844222 Msa0037720:intron 25.0%
! TTTATGTTCAAAAACGTCAA+CGG + chr1_1:66844255-66844274 None:intergenic 25.0%
! GGTAATAATTATAAGACACA+AGG + chr1_1:66844414-66844433 None:intergenic 25.0%
! TGATTCAGACTAACAATATT+TGG - chr1_1:66844458-66844477 Msa0037720:intron 25.0%
! GGATCAATATTTACAGATTT+CGG - chr1_1:66844479-66844498 Msa0037720:intron 25.0%
! AGTTATTGAAGATAAGTGTT+TGG - chr1_1:66844578-66844597 Msa0037720:intron 25.0%
!! GATCAAAAGAAATTTTATGG+GGG - chr1_1:66844603-66844622 Msa0037720:intron 25.0%
! TTCTCTAATTGAAAAAGTCA+AGG - chr1_1:66844821-66844840 Msa0037720:intron 25.0%
AGATAAAACTACATGGATCT+TGG - chr1_1:66836418-66836437 Msa0037720:three_prime_UTR 30.0%
TATACCATATGACAGTATAG+AGG - chr1_1:66836488-66836507 Msa0037720:three_prime_UTR 30.0%
GGATTATATTGAAGAAGTTG+AGG + chr1_1:66836534-66836553 None:intergenic 30.0%
ATAATCATGGACTCACATAT+AGG + chr1_1:66836597-66836616 None:intergenic 30.0%
!! GGTTAAATATGTTGATGACA+TGG - chr1_1:66836698-66836717 Msa0037720:CDS 30.0%
GAACATGTATCATGATAGAA+AGG + chr1_1:66836782-66836801 None:intergenic 30.0%
!!! ACATGTTCCACTCATTTTTT+AGG - chr1_1:66836794-66836813 Msa0037720:CDS 30.0%
! AGTTTTGCCTAAAAAATGAG+TGG + chr1_1:66836804-66836823 None:intergenic 30.0%
AAAGTTAAGTCACTAGTGTA+AGG + chr1_1:66836895-66836914 None:intergenic 30.0%
! TCAACTAGAGTCCAATTTTA+GGG + chr1_1:66836981-66837000 None:intergenic 30.0%
! ATCAACTAGAGTCCAATTTT+AGG + chr1_1:66836982-66837001 None:intergenic 30.0%
TGATAACAAGATCACAATCT+TGG - chr1_1:66836998-66837017 Msa0037720:CDS 30.0%
TTAGAAGTCTTACTCTTGAT+TGG + chr1_1:66837349-66837368 None:intergenic 30.0%
TTCCATCGAAGCATAATTAA+AGG - chr1_1:66837594-66837613 Msa0037720:intron 30.0%
AAAGTCCAGGGATAATTTAT+TGG - chr1_1:66837629-66837648 Msa0037720:intron 30.0%
TGATCAGAATAAGTTCTATG+GGG - chr1_1:66837686-66837705 Msa0037720:intron 30.0%
AGCTATGTCTACAATGTTAA+TGG + chr1_1:66837718-66837737 None:intergenic 30.0%
ATTAAACCATAAATGCAAGC+GGG + chr1_1:66837817-66837836 None:intergenic 30.0%
GTATCTTCTTCTTCATATCA+TGG - chr1_1:66838085-66838104 Msa0037720:intron 30.0%
TTAGAGTCATAGTCTTCTTA+AGG - chr1_1:66838576-66838595 Msa0037720:intron 30.0%
! ATGGATATGATTTTTGTGAC+TGG - chr1_1:66839303-66839322 Msa0037720:intron 30.0%
AAAAAGGAACTAAAACCTGA+TGG + chr1_1:66839411-66839430 None:intergenic 30.0%
! AATCGGTTGTATTTGGATTT+TGG + chr1_1:66839434-66839453 None:intergenic 30.0%
AAAATCCAAATACAACCGAT+TGG - chr1_1:66839433-66839452 Msa0037720:intron 30.0%
! ATTGCTAAAGAGTATGAACT+TGG + chr1_1:66839609-66839628 None:intergenic 30.0%
CTTTAACTAAAGAATACTGG+GGG + chr1_1:66839804-66839823 None:intergenic 30.0%
CCTTTAACTAAAGAATACTG+GGG + chr1_1:66839805-66839824 None:intergenic 30.0%
CCCTTTAACTAAAGAATACT+GGG + chr1_1:66839806-66839825 None:intergenic 30.0%
CCCAGTATTCTTTAGTTAAA+GGG - chr1_1:66839803-66839822 Msa0037720:intron 30.0%
CCAGTATTCTTTAGTTAAAG+GGG - chr1_1:66839804-66839823 Msa0037720:intron 30.0%
CCTATGAATATGTATTCATC+GGG + chr1_1:66839923-66839942 None:intergenic 30.0%
GCCTATGAATATGTATTCAT+CGG + chr1_1:66839924-66839943 None:intergenic 30.0%
TCTGGACTATATTTAGATCT+TGG + chr1_1:66839975-66839994 None:intergenic 30.0%
ATTACCATAAAATGGCATAC+TGG + chr1_1:66840590-66840609 None:intergenic 30.0%
CAAAACATGAGAAAAACGTT+TGG + chr1_1:66840778-66840797 None:intergenic 30.0%
AGTTGTCCCTAAATACATTA+AGG + chr1_1:66840950-66840969 None:intergenic 30.0%
ACTGAAGAAGTTACTTATTG+AGG + chr1_1:66840976-66840995 None:intergenic 30.0%
CTTCGGTAGATAATAGAATT+TGG + chr1_1:66841066-66841085 None:intergenic 30.0%
GTGGTTTCAATATTAAAGAG+TGG + chr1_1:66841278-66841297 None:intergenic 30.0%
AGAAGTTAAAGTTAGAATGG+TGG + chr1_1:66841364-66841383 None:intergenic 30.0%
TGGAGAAGTTAAAGTTAGAA+TGG + chr1_1:66841367-66841386 None:intergenic 30.0%
ACTTCTCCAAAACATCAATA+TGG - chr1_1:66841378-66841397 Msa0037720:intron 30.0%
!! AGAAACTTGTTAACACAAGT+CGG - chr1_1:66841576-66841595 Msa0037720:intron 30.0%
! AAGAATTTCATTGAGTTGTC+GGG + chr1_1:66841625-66841644 None:intergenic 30.0%
TTACAAACTCTCCCTATAAA+AGG + chr1_1:66841680-66841699 None:intergenic 30.0%
TAACAAAAAACGAGTGACTT+GGG - chr1_1:66841697-66841716 Msa0037720:intron 30.0%
GTTCACACATTCACAAAATT+GGG - chr1_1:66841949-66841968 Msa0037720:intron 30.0%
AAATGAAACATTTGTGTGGA+AGG - chr1_1:66843010-66843029 Msa0037720:intron 30.0%
! TTGAATTTGACTAGTTGACA+AGG - chr1_1:66843417-66843436 Msa0037720:intron 30.0%
! GGTATAGTCCTTTTACTTTA+AGG - chr1_1:66843543-66843562 Msa0037720:intron 30.0%
CATACTACCCTTAAAGTAAA+AGG + chr1_1:66843554-66843573 None:intergenic 30.0%
!! CTTTTACTTTAAGGGTAGTA+TGG - chr1_1:66843552-66843571 Msa0037720:intron 30.0%
AGTATGGACCTTAAATTTGA+AGG - chr1_1:66843568-66843587 Msa0037720:intron 30.0%
GTATGGACCTTAAATTTGAA+GGG - chr1_1:66843569-66843588 Msa0037720:intron 30.0%
TTGAATACATTGATGAGATG+TGG - chr1_1:66843723-66843742 Msa0037720:CDS 30.0%
ATGTATTGTGCAAGTACAAT+TGG + chr1_1:66843912-66843931 None:intergenic 30.0%
! ACATGTTCCACTCATTTTAT+AGG - chr1_1:66843928-66843947 Msa0037720:CDS 30.0%
AACTTTGCCTATAAAATGAG+TGG + chr1_1:66843938-66843957 None:intergenic 30.0%
TGAGATGGTTAGAACATATT+AGG + chr1_1:66844435-66844454 None:intergenic 30.0%
AGCTATGTCTACAATGTTAA+TGG + chr1_1:66837718-66837737 None:intergenic 30.0%
TAAACCATAAATGCAATCGA+GGG + chr1_1:66844731-66844750 None:intergenic 30.0%
TTAAACCATAAATGCAATCG+AGG + chr1_1:66844732-66844751 None:intergenic 30.0%
GCATCTTCTTGAGAAAATTA+TGG - chr1_1:66844852-66844871 Msa0037720:CDS 30.0%
! ACAAAGCATTTGTATCTTCA+TGG - chr1_1:66844892-66844911 Msa0037720:CDS 30.0%
! CAAAGCATTTGTATCTTCAT+GGG - chr1_1:66844893-66844912 Msa0037720:CDS 30.0%
AGGTGGAGAACAAAATTATA+AGG + chr1_1:66845095-66845114 None:intergenic 30.0%
ATGGCAGAGATAAAACTACA+TGG - chr1_1:66836411-66836430 Msa0037720:three_prime_UTR 35.0%
GTATAGCCCTTTCACTTTAA+GGG - chr1_1:66836440-66836459 Msa0037720:three_prime_UTR 35.0%
ATACCACCCTTAAAGTGAAA+GGG + chr1_1:66836449-66836468 None:intergenic 35.0%
GTATGGACTCTAAATCTGAA+GGG - chr1_1:66836465-66836484 Msa0037720:three_prime_UTR 35.0%
TCTTCCTCTATACTGTCATA+TGG + chr1_1:66836495-66836514 None:intergenic 35.0%
TAGAGGAAGATCACTTCAAT+AGG - chr1_1:66836505-66836524 Msa0037720:three_prime_UTR 35.0%
ATGTATCATGATAGAAAGGC+TGG + chr1_1:66836778-66836797 None:intergenic 35.0%
TTCACACTCAACCCTAAAAT+TGG - chr1_1:66836967-66836986 Msa0037720:CDS 35.0%
!!! TGTTTTTTTCCATGTCAAGC+TGG + chr1_1:66837214-66837233 None:intergenic 35.0%
CTTTAAGCACACCAACAAAA+GGG - chr1_1:66837377-66837396 Msa0037720:intron 35.0%
CACCTTTAATTATGCTTCGA+TGG + chr1_1:66837599-66837618 None:intergenic 35.0%
GCATAATTAAAGGTGAAGAG+CGG - chr1_1:66837604-66837623 Msa0037720:intron 35.0%
CATAATTAAAGGTGAAGAGC+GGG - chr1_1:66837605-66837624 Msa0037720:intron 35.0%
GATAATTTATTGGAGCGACT+CGG - chr1_1:66837639-66837658 Msa0037720:intron 35.0%
GATCAGAATAAGTTCTATGG+GGG - chr1_1:66837687-66837706 Msa0037720:intron 35.0%
AACATTGTAGACATAGCTCT+TGG - chr1_1:66837720-66837739 Msa0037720:intron 35.0%
TTAAACCATAAATGCAAGCG+GGG + chr1_1:66837816-66837835 None:intergenic 35.0%
!!! CTCAGAGGTATTTTCTTTGA+TGG + chr1_1:66837859-66837878 None:intergenic 35.0%
AGAAGTTTGTGGCTTATGTA+AGG - chr1_1:66837883-66837902 Msa0037720:CDS 35.0%
ATGCTATAGAAAGAGTCATG+AGG + chr1_1:66838604-66838623 None:intergenic 35.0%
TGTGCAAGTTTACTAGTTGA+CGG + chr1_1:66838642-66838661 None:intergenic 35.0%
ACAGAATATACGAGCATCAT+TGG + chr1_1:66838725-66838744 None:intergenic 35.0%
AAGTGTAAGAACACTTGAGA+TGG + chr1_1:66838758-66838777 None:intergenic 35.0%
ATCTCAAGTGTTCTTACACT+TGG - chr1_1:66838757-66838776 Msa0037720:intron 35.0%
! AATTTTTCATGCCATTCCTC+AGG - chr1_1:66839093-66839112 Msa0037720:intron 35.0%
TAAAGTAAACTCCTGAGGAA+TGG + chr1_1:66839107-66839126 None:intergenic 35.0%
GATTCATGGACAAGAAAACA+TGG + chr1_1:66839160-66839179 None:intergenic 35.0%
TAACTCGATAGTACTCCAAA+TGG + chr1_1:66839253-66839272 None:intergenic 35.0%
GAGTACTATCGAGTTATGAA+CGG - chr1_1:66839257-66839276 Msa0037720:intron 35.0%
! TAAAGGGACTAGTACTCTTA+TGG - chr1_1:66839284-66839303 Msa0037720:intron 35.0%
! GTCTAAAACCTTTGACTACA+AGG - chr1_1:66839361-66839380 Msa0037720:intron 35.0%
CAAAACCAATCGGTTGTATT+TGG + chr1_1:66839441-66839460 None:intergenic 35.0%
CTCATAGTTGCAAAACCAAT+CGG + chr1_1:66839451-66839470 None:intergenic 35.0%
GTCTAACAAAACATGACACT+TGG + chr1_1:66839483-66839502 None:intergenic 35.0%
CCCCAGTATTCTTTAGTTAA+AGG - chr1_1:66839802-66839821 Msa0037720:intron 35.0%
CCCCTTTAACTAAAGAATAC+TGG + chr1_1:66839807-66839826 None:intergenic 35.0%
CCCGATGAATACATATTCAT+AGG - chr1_1:66839920-66839939 Msa0037720:intron 35.0%
TATATTTAGATCTTGGACCC+AGG + chr1_1:66839968-66839987 None:intergenic 35.0%
! TTTTTGAACTTGGGATTGTC+TGG + chr1_1:66839993-66840012 None:intergenic 35.0%
TACTGGATGTATAGACATGT+TGG + chr1_1:66840573-66840592 None:intergenic 35.0%
!!! ACATCCAGTATGCCATTTTA+TGG - chr1_1:66840583-66840602 Msa0037720:intron 35.0%
TATCTACCGAAGTTGTTACT+AGG - chr1_1:66841074-66841093 Msa0037720:intron 35.0%
ACTCAACCTAGTAACAACTT+CGG + chr1_1:66841083-66841102 None:intergenic 35.0%
!!! TAGTTGAGCTTGTTTTATCC+TGG + chr1_1:66841185-66841204 None:intergenic 35.0%
GAGAATTACACCCTCAAATA+TGG - chr1_1:66841244-66841263 Msa0037720:intron 35.0%
GGTCTTAGAACCATATTTGA+GGG + chr1_1:66841257-66841276 None:intergenic 35.0%
! TGGTCTTAGAACCATATTTG+AGG + chr1_1:66841258-66841277 None:intergenic 35.0%
GTCTAAGCACCATAATAGAA+TGG + chr1_1:66841323-66841342 None:intergenic 35.0%
! GTAGTGCCATATTGATGTTT+TGG + chr1_1:66841387-66841406 None:intergenic 35.0%
GTAGTATCACCATATTTGAG+TGG + chr1_1:66841412-66841431 None:intergenic 35.0%
GTAACAAAAAACGAGTGACT+TGG - chr1_1:66841696-66841715 Msa0037720:intron 35.0%
AACAAAAAACGAGTGACTTG+GGG - chr1_1:66841698-66841717 Msa0037720:intron 35.0%
!! AACGCGCTTTGTTTCTTAAT+TGG - chr1_1:66841746-66841765 Msa0037720:intron 35.0%
CGTTCACACATTCACAAAAT+TGG - chr1_1:66841948-66841967 Msa0037720:intron 35.0%
TAAAAATGTCCCACATTGGA+GGG + chr1_1:66842039-66842058 None:intergenic 35.0%
TTAAAAATGTCCCACATTGG+AGG + chr1_1:66842040-66842059 None:intergenic 35.0%
GACTTAAAAATGTCCCACAT+TGG + chr1_1:66842043-66842062 None:intergenic 35.0%
CTATGAAAGAACTAGTGTGT+GGG + chr1_1:66842069-66842088 None:intergenic 35.0%
ACTATGAAAGAACTAGTGTG+TGG + chr1_1:66842070-66842089 None:intergenic 35.0%
TAATATGCATGTGAGTGTGT+TGG + chr1_1:66842135-66842154 None:intergenic 35.0%
TTGTTTGGTAAACAATACCG+TGG - chr1_1:66842352-66842371 Msa0037720:intron 35.0%
AATCTTCGTCAACGTTTCAT+GGG + chr1_1:66843043-66843062 None:intergenic 35.0%
GTGGATCACCATCTATAAAA+AGG - chr1_1:66843455-66843474 Msa0037720:intron 35.0%
TCACCATCTATAAAAAGGAC+TGG - chr1_1:66843460-66843479 Msa0037720:intron 35.0%
! ACACCAGTCCTTTTTATAGA+TGG + chr1_1:66843466-66843485 None:intergenic 35.0%
! ATCTATAAAAAGGACTGGTG+TGG - chr1_1:66843465-66843484 Msa0037720:intron 35.0%
! TCTATAAAAAGGACTGGTGT+GGG - chr1_1:66843466-66843485 Msa0037720:intron 35.0%
! AGGTGAAACTACATGGATTT+TGG - chr1_1:66843522-66843541 Msa0037720:intron 35.0%
! CTGGAGTTTTCTTGTGTATT+GGG + chr1_1:66843658-66843677 None:intergenic 35.0%
! ACTGGAGTTTTCTTGTGTAT+TGG + chr1_1:66843659-66843678 None:intergenic 35.0%
ATGATCATGGACTCACATAT+GGG + chr1_1:66843701-66843720 None:intergenic 35.0%
AATGATCATGGACTCACATA+TGG + chr1_1:66843702-66843721 None:intergenic 35.0%
CAATTGGATTATGATCACGA+TGG + chr1_1:66843896-66843915 None:intergenic 35.0%
!!! CATCTTTTTTCGTGTCAAGT+TGG + chr1_1:66844281-66844300 None:intergenic 35.0%
TAGTCTGAATCAAGATGAGA+TGG + chr1_1:66844450-66844469 None:intergenic 35.0%
TTTACAGATTTCGGCAATTG+CGG - chr1_1:66844488-66844507 Msa0037720:intron 35.0%
!! CTTCACCAATTTTGCTATAG+AGG + chr1_1:66844518-66844537 None:intergenic 35.0%
AACATTGTAGACATAGCTCT+TGG - chr1_1:66837720-66837739 Msa0037720:intron 35.0%
TGTACCAAATACCTCTGTTT+AGG + chr1_1:66845115-66845134 None:intergenic 35.0%
GGTATAGCCCTTTCACTTTA+AGG - chr1_1:66836439-66836458 Msa0037720:three_prime_UTR 40.0%
CATACCACCCTTAAAGTGAA+AGG + chr1_1:66836450-66836469 None:intergenic 40.0%
! CTTTCACTTTAAGGGTGGTA+TGG - chr1_1:66836448-66836467 Msa0037720:three_prime_UTR 40.0%
GGTATGGACTCTAAATCTGA+AGG - chr1_1:66836464-66836483 Msa0037720:three_prime_UTR 40.0%
ACTGGAGTCTTCTTGTGTAT+TGG + chr1_1:66836555-66836574 None:intergenic 40.0%
! ACAGAGCTCAAGCAAGATTT+TGG - chr1_1:66836676-66836695 Msa0037720:exon 40.0%
! CAGAGCTCAAGCAAGATTTT+GGG - chr1_1:66836677-66836696 Msa0037720:exon 40.0%
CATAAATGACCAGCTTGACA+TGG - chr1_1:66837202-66837221 Msa0037720:intron 40.0%
! GCTTTAAGCACACCAACAAA+AGG - chr1_1:66837376-66837395 Msa0037720:intron 40.0%
! TGCATATGAGACCCTTTTGT+TGG + chr1_1:66837391-66837410 None:intergenic 40.0%
GGATCAATGCTTGAAGTTTC+CGG - chr1_1:66837560-66837579 Msa0037720:intron 40.0%
TCGCTCCAATAAATTATCCC+TGG + chr1_1:66837637-66837656 None:intergenic 40.0%
TAAACCATAAATGCAAGCGG+GGG + chr1_1:66837815-66837834 None:intergenic 40.0%
!! GAGGTATTTTCTTTGATGGC+TGG + chr1_1:66837855-66837874 None:intergenic 40.0%
CTTAATCTTTGCAATAGCCG+CGG - chr1_1:66838273-66838292 Msa0037720:intron 40.0%
AATTCATTGCGATAGTACCG+CGG + chr1_1:66838293-66838312 None:intergenic 40.0%
TCGCAATGAATTAACACAGC+CGG - chr1_1:66838301-66838320 Msa0037720:intron 40.0%
GCTAGCAGAAATCCCTTTAT+GGG + chr1_1:66838338-66838357 None:intergenic 40.0%
TGCTAGCAGAAATCCCTTTA+TGG + chr1_1:66838339-66838358 None:intergenic 40.0%
TAAAGGGATTTCTGCTAGCA+AGG - chr1_1:66838339-66838358 Msa0037720:intron 40.0%
GAACTAGTGAAGAAGCAAGT+TGG + chr1_1:66838372-66838391 None:intergenic 40.0%
CTCATCTCAGATTCATTCCA+TGG - chr1_1:66838403-66838422 Msa0037720:intron 40.0%
ATCTCAGATTCATTCCATGG+TGG - chr1_1:66838406-66838425 Msa0037720:intron 40.0%
!! GACTCTAAGACTACTTCACT+AGG + chr1_1:66838564-66838583 None:intergenic 40.0%
TTTCACGACATCGACAATGT+CGG - chr1_1:66838666-66838685 Msa0037720:intron 40.0%
GTCGGATCTAATACATTCAG+TGG - chr1_1:66838684-66838703 Msa0037720:intron 40.0%
! TGGTCTAAAGTAAACTCCTG+AGG + chr1_1:66839112-66839131 None:intergenic 40.0%
! CCTGAAAGTTTTGCGATTCA+TGG + chr1_1:66839174-66839193 None:intergenic 40.0%
CCATGAATCGCAAAACTTTC+AGG - chr1_1:66839171-66839190 Msa0037720:intron 40.0%
AGGCAACTTTCACATCCATT+TGG - chr1_1:66839235-66839254 Msa0037720:intron 40.0%
TACTATCGAGTTATGAACGG+CGG - chr1_1:66839260-66839279 Msa0037720:intron 40.0%
AAGGCTTTCCTTGTAGTCAA+AGG + chr1_1:66839372-66839391 None:intergenic 40.0%
!! TGGTACGGTTGATGAATACA+AGG + chr1_1:66839391-66839410 None:intergenic 40.0%
TATTCATCAACCGTACCATC+AGG - chr1_1:66839393-66839412 Msa0037720:intron 40.0%
GGAACTAAAACCTGATGGTA+CGG + chr1_1:66839406-66839425 None:intergenic 40.0%
CCTCATTGGATGCTGAATTA+TGG + chr1_1:66839541-66839560 None:intergenic 40.0%
CCATAATTCAGCATCCAATG+AGG - chr1_1:66839538-66839557 Msa0037720:intron 40.0%
! TTAGCTTTCTTACCTCCTTG+AGG - chr1_1:66839630-66839649 Msa0037720:intron 40.0%
GATGTTATAGAACCTCAAGG+AGG + chr1_1:66839645-66839664 None:intergenic 40.0%
CGAGATGTTATAGAACCTCA+AGG + chr1_1:66839648-66839667 None:intergenic 40.0%
! AATGGGAGCACAACATTAGT+GGG + chr1_1:66839765-66839784 None:intergenic 40.0%
! TAATGGGAGCACAACATTAG+TGG + chr1_1:66839766-66839785 None:intergenic 40.0%
TGTGTATCATGCACTCTTGT+GGG + chr1_1:66840471-66840490 None:intergenic 40.0%
TTGTGTATCATGCACTCTTG+TGG + chr1_1:66840472-66840491 None:intergenic 40.0%
!!! TTGAGCTTGTTTTATCCTGG+AGG + chr1_1:66841182-66841201 None:intergenic 40.0%
GTGCTTAGACCACTCAAATA+TGG - chr1_1:66841333-66841352 Msa0037720:intron 40.0%
GTGGTAACACCATATTTGAG+TGG + chr1_1:66841345-66841364 None:intergenic 40.0%
CCTTTCGGTTTCAAATAGAG+CGG + chr1_1:66841534-66841553 None:intergenic 40.0%
! CGCTCTATTTGAAACCGAAA+GGG - chr1_1:66841532-66841551 Msa0037720:intron 40.0%
TGAAACCGAAAGGGACAAAA+AGG - chr1_1:66841541-66841560 Msa0037720:intron 40.0%
! CTACTCCTTTTTGTCCCTTT+CGG + chr1_1:66841549-66841568 None:intergenic 40.0%
!! AACTTGTTAACACAAGTCGG+AGG - chr1_1:66841579-66841598 Msa0037720:intron 40.0%
! ACTTGTTAACACAAGTCGGA+GGG - chr1_1:66841580-66841599 Msa0037720:intron 40.0%
!! TTTTCGGTGTATCGAATGAG+TGG - chr1_1:66841643-66841662 Msa0037720:intron 40.0%
! TTTCGGTGTATCGAATGAGT+GGG - chr1_1:66841644-66841663 Msa0037720:intron 40.0%
! GGCGAACTTCTCCTTTTATA+GGG - chr1_1:66841666-66841685 Msa0037720:intron 40.0%
AAACAAAGCGCGTTTGCTTA+AGG + chr1_1:66841740-66841759 None:intergenic 40.0%
TGGATATATCCGGAAGTTTC+TGG - chr1_1:66841766-66841785 Msa0037720:intron 40.0%
! AAGTTTCTGGATACGCGTTA+TGG - chr1_1:66841779-66841798 Msa0037720:intron 40.0%
TTTGGTAAACAATACCGTGG+AGG - chr1_1:66842355-66842374 Msa0037720:intron 40.0%
TTGGTAAACAATACCGTGGA+GGG - chr1_1:66842356-66842375 Msa0037720:intron 40.0%
!!! GGTTTTAAGGGAAGGACATT+AGG + chr1_1:66842382-66842401 None:intergenic 40.0%
TGTCCTTCCCTTAAAACCAA+CGG - chr1_1:66842384-66842403 Msa0037720:intron 40.0%
!! ATTTTAATCGTGAGACCCGT+TGG + chr1_1:66842403-66842422 None:intergenic 40.0%
ATCACATAAACTTGAGACGG+TGG + chr1_1:66842453-66842472 None:intergenic 40.0%
CAATCTTCGTCAACGTTTCA+TGG + chr1_1:66843044-66843063 None:intergenic 40.0%
GAAACGTTGACGAAGATTGA+AGG - chr1_1:66843045-66843064 Msa0037720:intron 40.0%
TGATCCACCATGGAGTTATT+TGG + chr1_1:66843443-66843462 None:intergenic 40.0%
TTATAGATGGTGATCCACCA+TGG + chr1_1:66843453-66843472 None:intergenic 40.0%
AGGATAACACAACACAAGCT+AGG - chr1_1:66843492-66843511 Msa0037720:intron 40.0%
TAACACAACACAAGCTAGGA+TGG - chr1_1:66843496-66843515 Msa0037720:intron 40.0%
GGGTTATATTGAAGAAGCAG+AGG + chr1_1:66843638-66843657 None:intergenic 40.0%
TTTCCATCATGAACTAGCAC+TGG + chr1_1:66843677-66843696 None:intergenic 40.0%
ATAGGCAAAGTTACACCATG+AGG - chr1_1:66843946-66843965 Msa0037720:CDS 40.0%
GCACTCCTCTATAGCAAAAT+TGG - chr1_1:66844510-66844529 Msa0037720:intron 40.0%
AGAAGGCCAGAGAGAATTTA+TGG - chr1_1:66844544-66844563 Msa0037720:intron 40.0%
GAAGGCCAGAGAGAATTTAT+GGG - chr1_1:66844545-66844564 Msa0037720:intron 40.0%
GATTCCCTCGATTGCATTTA+TGG - chr1_1:66844724-66844743 Msa0037720:intron 40.0%
!!! AGGGGTGTTTTCTTTGATGA+CGG + chr1_1:66844772-66844791 None:intergenic 40.0%
TGAAAAAGTCAAGGCAGTCA+AGG - chr1_1:66844830-66844849 Msa0037720:CDS 40.0%
TTTGTTCTCCACCTAAACAG+AGG - chr1_1:66845101-66845120 Msa0037720:CDS 40.0%
!! TCCACCTAAACAGAGGTATT+TGG - chr1_1:66845108-66845127 Msa0037720:CDS 40.0%
ACCAAATACCTCTGTTTAGG+TGG + chr1_1:66845112-66845131 None:intergenic 40.0%
! TAGCCCTTTCACTTTAAGGG+TGG - chr1_1:66836443-66836462 Msa0037720:three_prime_UTR 45.0%
TTTCCATCATGAACCAGCAC+TGG + chr1_1:66836573-66836592 None:intergenic 45.0%
CTTGCTTGAGCTCTGTCATA+TGG + chr1_1:66836672-66836691 None:intergenic 45.0%
TGTTGGTGTGCTTAAAGCGA+AGG + chr1_1:66837374-66837393 None:intergenic 45.0%
CTTGAAGTTTCCGGCAATTG+TGG - chr1_1:66837569-66837588 Msa0037720:intron 45.0%
CACAAACTTCTCTTGCTCAG+AGG + chr1_1:66837874-66837893 None:intergenic 45.0%
CTCTGAGCAAGAGAAGTTTG+TGG - chr1_1:66837872-66837891 Msa0037720:CDS 45.0%
TGAATTAACACAGCCGGTAG+CGG - chr1_1:66838307-66838326 Msa0037720:intron 45.0%
TTTATGGGAGAAACCGCTAC+CGG + chr1_1:66838323-66838342 None:intergenic 45.0%
GTAGCGGTTTCTCCCATAAA+GGG - chr1_1:66838323-66838342 Msa0037720:intron 45.0%
!! GATATTGACTCAGTCCACCA+TGG + chr1_1:66838423-66838442 None:intergenic 45.0%
TGCACATTGAGCATCACTAG+AGG + chr1_1:66838466-66838485 None:intergenic 45.0%
AGTTATGAACGGCGGCTAAA+GGG - chr1_1:66839268-66839287 Msa0037720:intron 45.0%
! ATGGGAGCACAACATTAGTG+GGG + chr1_1:66839764-66839783 None:intergenic 45.0%
ACTAGTGAGTTCAACTCTCC+TGG - chr1_1:66839947-66839966 Msa0037720:intron 45.0%
CTAGTGAGTTCAACTCTCCT+GGG - chr1_1:66839948-66839967 Msa0037720:intron 45.0%
TCATGCACTCTTGTGGGAAA+AGG + chr1_1:66840465-66840484 None:intergenic 45.0%
!! GCTCTCTTTAAGACGTTTCG+TGG - chr1_1:66841115-66841134 Msa0037720:intron 45.0%
AGTCTGCCTTGCACAACTTT+GGG + chr1_1:66841146-66841165 None:intergenic 45.0%
TAGTCTGCCTTGCACAACTT+TGG + chr1_1:66841147-66841166 None:intergenic 45.0%
!!! AGCTTGTTTTATCCTGGAGG+CGG + chr1_1:66841179-66841198 None:intergenic 45.0%
GCACTACGACCACTCAAATA+TGG - chr1_1:66841400-66841419 Msa0037720:intron 45.0%
TTGATCGAAGCCACTCGATA+CGG - chr1_1:66841501-66841520 Msa0037720:intron 45.0%
! CCGCTCTATTTGAAACCGAA+AGG - chr1_1:66841531-66841550 Msa0037720:intron 45.0%
! TTCGGTGTATCGAATGAGTG+GGG - chr1_1:66841645-66841664 Msa0037720:intron 45.0%
! GGGCGAACTTCTCCTTTTAT+AGG - chr1_1:66841665-66841684 Msa0037720:intron 45.0%
AACGCGTATCCAGAAACTTC+CGG + chr1_1:66841778-66841797 None:intergenic 45.0%
TCTGGATACGCGTTATGGAT+CGG - chr1_1:66841784-66841803 Msa0037720:intron 45.0%
TTTGTTACGCGTAGCGCTTA+CGG - chr1_1:66841827-66841846 Msa0037720:intron 45.0%
TCACAAAATTGGGTACCCCA+AGG - chr1_1:66841959-66841978 Msa0037720:intron 45.0%
CACAAAATTGGGTACCCCAA+GGG - chr1_1:66841960-66841979 Msa0037720:intron 45.0%
GTCCTTCCCTTAAAACCAAC+GGG - chr1_1:66842385-66842404 Msa0037720:intron 45.0%
!!! GTGAGACCCGTTGGTTTTAA+GGG + chr1_1:66842394-66842413 None:intergenic 45.0%
GACAAGGCCAAATAACTCCA+TGG - chr1_1:66843433-66843452 Msa0037720:intron 45.0%
AAGGCCAAATAACTCCATGG+TGG - chr1_1:66843436-66843455 Msa0037720:intron 45.0%
! AAAAGGACTGGTGTGGGTTT+AGG - chr1_1:66843472-66843491 Msa0037720:intron 45.0%
ATGGCAGAGGTGAAACTACA+TGG - chr1_1:66843515-66843534 Msa0037720:intron 45.0%
ACTCCAGTGCTAGTTCATGA+TGG - chr1_1:66843671-66843690 Msa0037720:CDS 45.0%
GATGTGGTCACACAACTCAT+TGG - chr1_1:66843739-66843758 Msa0037720:CDS 45.0%
AATTGGTGAAGAGCGAGAGA+AGG - chr1_1:66844527-66844546 Msa0037720:intron 45.0%
TCGCTCCCATAAATTCTCTC+TGG + chr1_1:66844553-66844572 None:intergenic 45.0%
!! GGGGTGTTTTCTTTGATGAC+GGG + chr1_1:66844771-66844790 None:intergenic 45.0%
!!! TTTTATTAAGTATTAATTTA+TGG + chr1_1:66838017-66838036 None:intergenic 5.0%
!!! TAAGATAAAATATTTTTTTA+TGG + chr1_1:66842230-66842249 None:intergenic 5.0%
!! AAAATAAAATATATAAAAGT+TGG - chr1_1:66842425-66842444 Msa0037720:intron 5.0%
!! ATAAAAAAAAATTAAGTTAA+AGG - chr1_1:66844344-66844363 Msa0037720:intron 5.0%
ACACAAGAAGACTCCAGTGC+TGG - chr1_1:66836557-66836576 Msa0037720:three_prime_UTR 50.0%
!! ACTCCAGTGCTGGTTCATGA+TGG - chr1_1:66836567-66836586 Msa0037720:three_prime_UTR 50.0%
GCAGGAAGCAATGAGTTGTG+TGG + chr1_1:66836645-66836664 None:intergenic 50.0%
GCTCTGTCATATGGATCAGC+AGG + chr1_1:66836663-66836682 None:intergenic 50.0%
TGAAGAGCGGGAAAAGTCCA+GGG - chr1_1:66837617-66837636 Msa0037720:intron 50.0%
GATTCCCCCGCTTGCATTTA+TGG - chr1_1:66837808-66837827 Msa0037720:CDS 50.0%
! GGTAGCGGTTTCTCCCATAA+AGG - chr1_1:66838322-66838341 Msa0037720:intron 50.0%
GAGCATCATTGGCAGCACTT+AGG + chr1_1:66838714-66838733 None:intergenic 50.0%
GAGTTATGAACGGCGGCTAA+AGG - chr1_1:66839267-66839286 Msa0037720:intron 50.0%
! TGGGAGCACAACATTAGTGG+GGG + chr1_1:66839763-66839782 None:intergenic 50.0%
!! AGAATACTGGGGGCACTAGT+GGG + chr1_1:66839794-66839813 None:intergenic 50.0%
!! AAGAATACTGGGGGCACTAG+TGG + chr1_1:66839795-66839814 None:intergenic 50.0%
! TACTAGGTTGAGTCACGACC+AGG - chr1_1:66841090-66841109 Msa0037720:intron 50.0%
ACGTCTTAAAGAGAGCGACC+TGG + chr1_1:66841111-66841130 None:intergenic 50.0%
GCACTACCCAAAGTTGTGCA+AGG - chr1_1:66841137-66841156 Msa0037720:intron 50.0%
GAGTGGCTTCGATCAATCGT+CGG + chr1_1:66841497-66841516 None:intergenic 50.0%
CTGGATACGCGTTATGGATC+GGG - chr1_1:66841785-66841804 Msa0037720:intron 50.0%
ATACGCGTTATGGATCGGGT+CGG - chr1_1:66841789-66841808 Msa0037720:intron 50.0%
TATGGGCAAAGTGACCTCCA+AGG + chr1_1:66841991-66842010 None:intergenic 50.0%
!!! GACCCGTTGGTTTTAAGGGA+AGG + chr1_1:66842390-66842409 None:intergenic 50.0%
!!! CGTGAGACCCGTTGGTTTTA+AGG + chr1_1:66842395-66842414 None:intergenic 50.0%
GTCAACGTTTCATGGGTGCA+TGG + chr1_1:66843036-66843055 None:intergenic 50.0%
AACACAAGCTAGGATGGCAG+AGG - chr1_1:66843502-66843521 Msa0037720:intron 50.0%
GCTCTGTCATAGGGATCAAC+AGG + chr1_1:66843767-66843786 None:intergenic 50.0%
! ACAGAGCTCAAGCCCGATTT+TGG - chr1_1:66843780-66843799 Msa0037720:CDS 50.0%
! CAGAGCTCAAGCCCGATTTT+GGG - chr1_1:66843781-66843800 Msa0037720:CDS 50.0%
CACCAACTTCTCTTGGTCAG+GGG + chr1_1:66844790-66844809 None:intergenic 50.0%
CCACCAACTTCTCTTGGTCA+GGG + chr1_1:66844791-66844810 None:intergenic 50.0%
GAAAGGCCACCAACTTCTCT+TGG + chr1_1:66844797-66844816 None:intergenic 50.0%
CGATGGAACGCCACAATTGC+CGG + chr1_1:66837582-66837601 None:intergenic 55.0%
GTGAAGAGCGGGAAAAGTCC+AGG - chr1_1:66837616-66837635 Msa0037720:intron 55.0%
GAGACGACATACGTCGTCGT+TGG + chr1_1:66838051-66838070 None:intergenic 55.0%
! GCACTAGTGGGGGCTCTAAT+GGG + chr1_1:66839782-66839801 None:intergenic 55.0%
!! AATACTGGGGGCACTAGTGG+GGG + chr1_1:66839792-66839811 None:intergenic 55.0%
!! GAATACTGGGGGCACTAGTG+GGG + chr1_1:66839793-66839812 None:intergenic 55.0%
CGGTTACGTACCGTATCGAG+TGG + chr1_1:66841514-66841533 None:intergenic 55.0%
ACCTCCAAGGATGTGCCCTT+GGG + chr1_1:66841978-66841997 None:intergenic 55.0%
TTGGGGTGACCCTCCAATGT+GGG - chr1_1:66842027-66842046 Msa0037720:intron 55.0%
GAAGGACATTAGGCCCTCCA+CGG + chr1_1:66842372-66842391 None:intergenic 55.0%
CGGGCTTGAGCTCTGTCATA+GGG + chr1_1:66843776-66843795 None:intergenic 55.0%
TCGGGCTTGAGCTCTGTCAT+AGG + chr1_1:66843777-66843796 None:intergenic 55.0%
CACCCCTGACCAAGAGAAGT+TGG - chr1_1:66844785-66844804 Msa0037720:intron 55.0%
CCCTGACCAAGAGAAGTTGG+TGG - chr1_1:66844788-66844807 Msa0037720:intron 55.0%
GCCACCAACTTCTCTTGGTC+AGG + chr1_1:66844792-66844811 None:intergenic 55.0%
! GGAGCGACTCGGAGTTGTTG+AGG - chr1_1:66837650-66837669 Msa0037720:intron 60.0%
! GGCACTAGTGGGGGCTCTAA+TGG + chr1_1:66839783-66839802 None:intergenic 60.0%
! GTTTTATCCTGGAGGCGGCG+TGG + chr1_1:66841174-66841193 None:intergenic 60.0%
! GTACCCCAAGGGCACATCCT+TGG - chr1_1:66841971-66841990 Msa0037720:intron 60.0%
CCTCCAAGGATGTGCCCTTG+GGG + chr1_1:66841977-66841996 None:intergenic 60.0%
GACCTCCAAGGATGTGCCCT+TGG + chr1_1:66841979-66841998 None:intergenic 60.0%
GTTGGGGTGACCCTCCAATG+TGG - chr1_1:66842026-66842045 Msa0037720:intron 60.0%
CTATCAACCACGCCGCCTCC+AGG - chr1_1:66841164-66841183 Msa0037720:intron 65.0%
! CCCCAAGGGCACATCCTTGG+AGG - chr1_1:66841974-66841993 Msa0037720:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66836393 66845151 66836393 ID=Msa0037720;Name=Msa0037720
chr1_1 mRNA 66836393 66845151 66836393 ID=Msa0037720-mRNA-1;Parent=Msa0037720;Name=Msa0037720-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.33|0.25|1|0.66|0.5|4|288|449
chr1_1 exon 66836393 66837049 66836393 ID=Msa0037720-mRNA-1:exon:21648;Parent=Msa0037720-mRNA-1
chr1_1 exon 66837721 66838050 66837721 ID=Msa0037720-mRNA-1:exon:21647;Parent=Msa0037720-mRNA-1
chr1_1 exon 66843645 66843968 66843645 ID=Msa0037720-mRNA-1:exon:21646;Parent=Msa0037720-mRNA-1
chr1_1 exon 66844825 66845151 66844825 ID=Msa0037720-mRNA-1:exon:21645;Parent=Msa0037720-mRNA-1
chr1_1 CDS 66844825 66845151 66844825 ID=Msa0037720-mRNA-1:cds;Parent=Msa0037720-mRNA-1
chr1_1 CDS 66843645 66843968 66843645 ID=Msa0037720-mRNA-1:cds;Parent=Msa0037720-mRNA-1
chr1_1 CDS 66837721 66838050 66837721 ID=Msa0037720-mRNA-1:cds;Parent=Msa0037720-mRNA-1
chr1_1 CDS 66836681 66837049 66836681 ID=Msa0037720-mRNA-1:cds;Parent=Msa0037720-mRNA-1
chr1_1 three_prime_UTR 66836393 66836680 66836393 ID=Msa0037720-mRNA-1:three_prime_utr;Parent=Msa0037720-mRNA-1
Gene Sequence

>Msa0037720

ATGCACAAGCTAATTAAGATGGCAGAGATAAAACTACATGGATCTTGGTATAGCCCTTTCACTTTAAGGGTGGTATGGACTCTAAATCTGAAGGGTATACCATATGACAGTATAGAGGAAGATCACTTCAATAGGACTCCTCAACTTCTTCAATATAATCCAATACACAAGAAGACTCCAGTGCTGGTTCATGATGGAAAACCTATATGTGAGTCCATGATTATTGTTGAATACATTGATGAGATATGGCCACACAACTCATTGCTTCCTGCTGATCCATATGACAGAGCTCAAGCAAGATTTTGGGTTAAATATGTTGATGACATGTTTCCGGCAATTGTGGCGTTCCATCGAAGCATAATTAAAGGTGAAGAGCGGGAAAAGTCCAGGGATAATTTATTGGAGCGACTCGGAGTTGTTGAGGATCAGTGCTTGAATGATCAGAATAAGTTCTATGGGGGAGAAACCATTAACATTGTAGACATAGCTCTTGGATCTTTTGTGAAATTTATTGAGGTTCAAGAAGATATGTTTGAAGTGAAGATCTTGAAAAGTGAGAGATTCCCCCGCTTGCATTTATGGTTTAATAATTTCAAGGATGTTCCAGCCATCAAAGAAAATACCTCTGAGCAAGAGAAGTTTGTGGCTTATGATAACACAACACAAGCTAGGATGGCAGAGGTGAAACTACATGGATTTTGGTATAGTCCTTTTACTTTAAGGGTAGTATGGACCTTAAATTTGAAGGGTATATCATATGAGAACATAGAGGAAGATCGCTTCAATAAAAGTCCTCTGCTTCTTCAATATAACCCAATACACAAGAAAACTCCAGTGCTAGTTCATGATGGAAAACCCATATGTGAGTCCATGATCATTGTTGAATACATTGATGAGATGTGGTCACACAACTCATTGGTTCCTGTTGATCCCTATGACAGAGCTCAAGCCCGATTTTGGGTTAAATATGTTGATGAATTGATTTCGGCAATTGCGGCACTCCTCTATAGCAAAATTGGTGAAGAGCGAGAGAAGGCCAGAGAGAATTTATGGGAGCGACTCAGAGTTATTGAAGATAAGTGTTTGGATGATCAAAAGAAATTTTATGGGGGAGACACCATTAACATTGTAGACATAGCTCTTGGATCTTTTATCAAATTTATTGAGGTTCAAGAAGATATGTTTGAAGTGAAGATCTTGCAAAGTGAGAGATTCCCTCGATTGCATTTATGGTTTAATAATTTTAAGGATGTTCCCGTCATCAAAGAAAACACCCCTGACCAAGAGAAGTTGGTGGCCTTTCTTAATTCTCTAATTGAAAAAGTCAAGGCAGTCAAGGCATCTTCTTGA
Protein sequence

>Msa0037720

MHKLIKMAEIKLHGSWYSPFTLRVVWTLNLKGIPYDSIEEDHFNRTPQLLQYNPIHKKTPVLVHDGKPICESMIIVEYIDEIWPHNSLLPADPYDRAQARFWVKYVDDMFPAIVAFHRSIIKGEEREKSRDNLLERLGVVEDQCLNDQNKFYGGETINIVDIALGSFVKFIEVQEDMFEVKILKSERFPRLHLWFNNFKDVPAIKENTSEQEKFVAYDNTTQARMAEVKLHGFWYSPFTLRVVWTLNLKGISYENIEEDRFNKSPLLLQYNPIHKKTPVLVHDGKPICESMIIVEYIDEMWSHNSLVPVDPYDRAQARFWVKYVDELISAIAALLYSKIGEEREKARENLWERLRVIEDKCLDDQKKFYGGDTINIVDIALGSFIKFIEVQEDMFEVKILQSERFPRLHLWFNNFKDVPVIKENTPDQEKLVAFLNSLIEKVKAVKASS*