Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486980 | XP_024639103.1 | 92.157 | 357 | 28 | 0 | 7 | 363 | 3 | 359 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486980 | sp|B9FSC8|OPR11_ORYSJ | 74.581 | 358 | 85 | 1 | 11 | 362 | 6 | 363 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486980 | G7K3R3 | 91.877 | 357 | 29 | 0 | 7 | 363 | 3 | 359 | 0.0 | 692 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0083240 | Msa0486980 | 0.804898 | 1.732111e-49 | -8.615850e-47 |
| Msa0129640 | Msa0486980 | 0.838863 | 2.232940e-57 | -8.615850e-47 |
| Msa0178000 | Msa0486980 | 0.808039 | 3.767367e-50 | -8.615850e-47 |
| Msa0374290 | Msa0486980 | 0.841218 | 5.430067e-58 | -8.615850e-47 |
| Msa0397790 | Msa0486980 | 0.939640 | 9.046514e-100 | -8.615850e-47 |
| Msa0459640 | Msa0486980 | 0.812843 | 3.457474e-51 | -8.615850e-47 |
| Msa0351050 | Msa0486980 | 0.896394 | 3.847969e-76 | -8.615850e-47 |
| Msa0486980 | Msa0489070 | 0.893979 | 3.793027e-75 | -8.615850e-47 |
| Msa0486980 | Msa0515540 | 0.814924 | 1.202467e-51 | -8.615850e-47 |
| Msa0486980 | Msa0515590 | 0.814916 | 1.207120e-51 | -8.615850e-47 |
| Msa0486980 | Msa0713060 | 0.814900 | 1.217104e-51 | -8.615850e-47 |
| Msa0486980 | Msa0816630 | 0.809839 | 1.551721e-50 | -8.615850e-47 |
| Msa0486980 | Msa0863940 | 0.805479 | 1.308801e-49 | -8.615850e-47 |
| Msa0486980 | Msa1199870 | 0.822877 | 1.872889e-53 | -8.615850e-47 |
| Msa0486980 | Msa1221220 | 0.801750 | 7.769636e-49 | -8.615850e-47 |
| Msa0486980 | Msa1252810 | 0.812981 | 3.225393e-51 | -8.615850e-47 |
| Msa0486980 | Msa1350700 | 0.811718 | 6.084711e-51 | -8.615850e-47 |
| Msa0486980 | Msa1360260 | 0.803759 | 2.990977e-49 | -8.615850e-47 |
| Msa0486980 | Msa1369320 | 0.804966 | 1.675879e-49 | -8.615850e-47 |
| Msa0486980 | Msa1411370 | 0.805526 | 1.279168e-49 | -8.615850e-47 |
| Msa0486980 | Msa1412410 | 0.834532 | 2.838768e-56 | -8.615850e-47 |
| Msa0486980 | Msa1427860 | 0.839401 | 1.619914e-57 | -8.615850e-47 |
| Msa0486980 | Msa1439860 | 0.803417 | 3.521226e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486980 | MtrunA17_Chr5g0394751 | 91.877 | 357 | 29 | 0 | 7 | 363 | 3 | 359 | 0.0 | 692 |
| Msa0486980 | MtrunA17_Chr5g0394771 | 90.083 | 363 | 36 | 0 | 1 | 363 | 29 | 391 | 0.0 | 690 |
| Msa0486980 | MtrunA17_Chr5g0394861 | 84.906 | 371 | 48 | 3 | 1 | 363 | 1 | 371 | 0.0 | 649 |
| Msa0486980 | MtrunA17_Chr5g0394891 | 82.385 | 369 | 59 | 1 | 1 | 363 | 1 | 369 | 0.0 | 638 |
| Msa0486980 | MtrunA17_Chr5g0394841 | 79.784 | 371 | 67 | 2 | 1 | 363 | 1 | 371 | 0.0 | 620 |
| Msa0486980 | MtrunA17_Chr5g0394811 | 80.769 | 364 | 64 | 2 | 6 | 363 | 115 | 478 | 0.0 | 619 |
| Msa0486980 | MtrunA17_Chr5g0394811 | 67.939 | 131 | 39 | 1 | 18 | 148 | 1 | 128 | 5.50e-53 | 182 |
| Msa0486980 | MtrunA17_Chr5g0395841 | 78.261 | 368 | 74 | 1 | 1 | 362 | 3 | 370 | 0.0 | 611 |
| Msa0486980 | MtrunA17_Chr3g0144001 | 69.041 | 365 | 109 | 2 | 1 | 363 | 1 | 363 | 0.0 | 538 |
| Msa0486980 | MtrunA17_Chr4g0070561 | 52.973 | 370 | 155 | 3 | 12 | 362 | 19 | 388 | 1.56e-143 | 412 |
| Msa0486980 | MtrunA17_Chr5g0394791 | 66.495 | 194 | 53 | 2 | 7 | 194 | 6 | 193 | 4.56e-86 | 258 |
| Msa0486980 | MtrunA17_Chr5g0394801 | 66.154 | 195 | 39 | 1 | 161 | 355 | 18 | 185 | 8.46e-85 | 257 |
| Msa0486980 | MtrunA17_Chr3g0130471 | 83.721 | 43 | 7 | 0 | 188 | 230 | 1 | 43 | 3.27e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486980 | AT1G76690.1 | 72.629 | 369 | 95 | 1 | 1 | 363 | 3 | 371 | 0.0 | 577 |
| Msa0486980 | AT1G76680.1 | 72.629 | 369 | 95 | 2 | 1 | 363 | 1 | 369 | 0.0 | 576 |
| Msa0486980 | AT1G76680.2 | 68.020 | 394 | 95 | 3 | 1 | 363 | 1 | 394 | 0.0 | 562 |
| Msa0486980 | AT1G09400.1 | 69.444 | 324 | 99 | 0 | 18 | 341 | 1 | 324 | 2.19e-180 | 503 |
| Msa0486980 | AT1G09400.2 | 70.455 | 264 | 78 | 0 | 78 | 341 | 2 | 265 | 3.58e-146 | 414 |
| Msa0486980 | AT2G06050.2 | 51.169 | 385 | 165 | 3 | 1 | 362 | 1 | 385 | 3.68e-141 | 406 |
| Msa0486980 | AT2G06050.1 | 51.169 | 385 | 165 | 3 | 1 | 362 | 1 | 385 | 3.68e-141 | 406 |
| Msa0486980 | AT2G06050.3 | 51.169 | 385 | 165 | 3 | 1 | 362 | 1 | 385 | 3.68e-141 | 406 |
| Msa0486980 | AT1G17990.1 | 70.155 | 258 | 74 | 2 | 5 | 260 | 2 | 258 | 1.51e-137 | 392 |
| Msa0486980 | AT1G18020.1 | 70.155 | 258 | 74 | 2 | 5 | 260 | 2 | 258 | 1.51e-137 | 392 |
| Msa0486980 | AT1G17990.2 | 67.054 | 258 | 74 | 3 | 5 | 260 | 2 | 250 | 7.85e-129 | 370 |
Find 104 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATTAATTTGATTTAAT+TGG | 0.198344 | 3_4:-5285618 | Msa0486980:five_prime_UTR |
| GCAAACCTCTTTGGCAAATC+TGG | 0.210347 | 3_4:+5283970 | None:intergenic |
| CTCCTCTTAACAAGTATAAT+AGG | 0.228308 | 3_4:-5283939 | Msa0486980:CDS |
| AGGGCAGATCTTGTAGTTTA+TGG | 0.251067 | 3_4:-5284012 | Msa0486980:CDS |
| CTGAAGTCATTGACAATATC+AGG | 0.283543 | 3_4:+5284653 | None:intergenic |
| TTTAATTGGTGGTATCAAAA+TGG | 0.293740 | 3_4:-5285604 | Msa0486980:exon |
| TAGTCTAATTCCAACTTTAT+CGG | 0.320112 | 3_4:+5284281 | None:intergenic |
| GCATTAAGTGCAAACCTCTT+TGG | 0.332483 | 3_4:+5283961 | None:intergenic |
| CAATTTGAGAGGGAGTTGTT+AGG | 0.341045 | 3_4:+5285674 | None:intergenic |
| TATAAGAAGACCACCTTTAG+AGG | 0.341560 | 3_4:+5285333 | None:intergenic |
| GGCTTTCAATGGCACTTTCA+TGG | 0.346532 | 3_4:-5284085 | Msa0486980:CDS |
| ATGAGACTTCATATGACTTA+AGG | 0.350018 | 3_4:+5283182 | None:intergenic |
| GCATGAACAGCATCTACAAT+AGG | 0.357406 | 3_4:+5285223 | None:intergenic |
| AAATGCATTGGGACTTCATA+TGG | 0.358879 | 3_4:-5284217 | Msa0486980:CDS |
| GTCCATACACCTGGGCTGTC+TGG | 0.367237 | 3_4:+5285271 | None:intergenic |
| CTCATTGGCACAAGGCTGTA+AGG | 0.367432 | 3_4:+5284111 | None:intergenic |
| GAATCGTTGTCGATTTCCTT+TGG | 0.368620 | 3_4:-5284337 | Msa0486980:CDS |
| TCCCTATTATACTTGTTAAG+AGG | 0.369675 | 3_4:+5283937 | None:intergenic |
| TCATCTGTCCCAAGCCTTCT+CGG | 0.370065 | 3_4:+5284680 | None:intergenic |
| CAATGGCACTTTCATGGTTG+CGG | 0.371044 | 3_4:-5284079 | Msa0486980:CDS |
| ATATGAAGTCCCAATGCATT+TGG | 0.375541 | 3_4:+5284219 | None:intergenic |
| TCAATGCTATAGCTGAAAAC+AGG | 0.375838 | 3_4:-5284032 | Msa0486980:CDS |
| TGATCCGGTTGTAGGTTATA+CGG | 0.380846 | 3_4:-5283899 | Msa0486980:CDS |
| TACATTTCTGATCCGGTTGT+AGG | 0.387959 | 3_4:-5283907 | Msa0486980:CDS |
| AATGGCACTTTCATGGTTGC+GGG | 0.393208 | 3_4:-5284078 | Msa0486980:CDS |
| TTGAATTTGCCCATCTTGTA+AGG | 0.401075 | 3_4:+5285543 | None:intergenic |
| TTCTCGCCACCGAGAAGGCT+TGG | 0.405740 | 3_4:-5284689 | Msa0486980:CDS |
| TCCTCTTAACAAGTATAATA+GGG | 0.406224 | 3_4:-5283938 | Msa0486980:CDS |
| AAAGAATATTGTACTTATTG+AGG | 0.409340 | 3_4:+5284187 | None:intergenic |
| CCATTGAAAGCCTTTCTCAT+TGG | 0.410004 | 3_4:+5284096 | None:intergenic |
| AGGACCTTTGAGAGTAATAG+AGG | 0.421466 | 3_4:+5285353 | None:intergenic |
| ATCCAGACAGCCCAGGTGTA+TGG | 0.422639 | 3_4:-5285273 | Msa0486980:CDS |
| GCAAATTCAATCTCTCTCAT+AGG | 0.425449 | 3_4:-5285530 | Msa0486980:intron |
| AACATTCTACATTTCTGATC+CGG | 0.427062 | 3_4:-5283914 | Msa0486980:CDS |
| CAGCCTTGTGCCAATGAGAA+AGG | 0.431994 | 3_4:-5284106 | Msa0486980:CDS |
| GAAGCAGTTGTAAATGAGAT+AGG | 0.432088 | 3_4:-5284306 | Msa0486980:CDS |
| CATTAATTTGATTTAATTGG+TGG | 0.432365 | 3_4:-5285615 | Msa0486980:five_prime_UTR |
| CTTTCTGCATATTCAGCAAA+TGG | 0.438653 | 3_4:+5284255 | None:intergenic |
| GATATCGGTGCTTGTCCATT+CGG | 0.438814 | 3_4:+5284752 | None:intergenic |
| GACTCTAATCCAAATGCATT+GGG | 0.453689 | 3_4:-5284228 | Msa0486980:CDS |
| AATTTGAGAGGGAGTTGTTA+GGG | 0.454555 | 3_4:+5285675 | None:intergenic |
| GAAGGTTCCACTTCCAACCT+TGG | 0.461724 | 3_4:+5283832 | None:intergenic |
| AAGAATATTGTACTTATTGA+GGG | 0.462924 | 3_4:+5284188 | None:intergenic |
| GAGATAGGAGCCGATAAAGT+TGG | 0.478784 | 3_4:-5284291 | Msa0486980:CDS |
| GTCGGATACACCAGTAGCTT+CGG | 0.479603 | 3_4:+5285309 | None:intergenic |
| TGCTCTTTAGTCCATACACC+TGG | 0.485488 | 3_4:+5285262 | None:intergenic |
| CTCACTAGAATAAGATCCTA+TGG | 0.486036 | 3_4:-5285400 | Msa0486980:CDS |
| TCTTCTTACACCTTACAAGA+TGG | 0.486533 | 3_4:-5285553 | Msa0486980:CDS |
| TCTCGCCACCGAGAAGGCTT+GGG | 0.486835 | 3_4:-5284688 | Msa0486980:CDS |
| CGAATCCAGATTTGCCAAAG+AGG | 0.491902 | 3_4:-5283975 | Msa0486980:CDS |
| ATTGCTTGTGAGTGACTTGT+CGG | 0.493116 | 3_4:+5284724 | None:intergenic |
| CTTCTTATAGCCGAAGCTAC+TGG | 0.505350 | 3_4:-5285319 | Msa0486980:CDS |
| AGACTCTAATCCAAATGCAT+TGG | 0.510548 | 3_4:-5284229 | Msa0486980:CDS |
| CATGAATGAGTAAATACTCA+TGG | 0.511959 | 3_4:-5283162 | Msa0486980:three_prime_UTR |
| TAAGGTGTAAGAAGAGGAAT+GGG | 0.514396 | 3_4:+5285561 | None:intergenic |
| TTGTCCTCTATTACTCTCAA+AGG | 0.525613 | 3_4:-5285357 | Msa0486980:CDS |
| TCATTGGCACAAGGCTGTAA+GGG | 0.525679 | 3_4:+5284112 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.528089 | 3_4:-5284623 | Msa0486980:intron |
| GTAAGGTGTAAGAAGAGGAA+TGG | 0.528759 | 3_4:+5285560 | None:intergenic |
| GTAGCATCCAAGGTTGGAAG+TGG | 0.529512 | 3_4:-5283839 | Msa0486980:three_prime_UTR |
| TACTCTCAAAGGTCCTCTAA+AGG | 0.530036 | 3_4:-5285346 | Msa0486980:CDS |
| ATGCTGTACTGTAGCATCCA+AGG | 0.530490 | 3_4:-5283849 | Msa0486980:three_prime_UTR |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 3_4:+5284403 | None:intergenic |
| AATATGCAATTCAATTTGAG+AGG | 0.530530 | 3_4:+5285663 | None:intergenic |
| GACTTGTCGGTAGAAGATAT+CGG | 0.533594 | 3_4:+5284737 | None:intergenic |
| ATCGAAATCCATGGAGCTCA+TGG | 0.534699 | 3_4:-5284429 | Msa0486980:CDS |
| CTTCTTACACCTTACAAGAT+GGG | 0.542433 | 3_4:-5285552 | Msa0486980:CDS |
| TTCATACTAGCTTATCGGCT+AGG | 0.542451 | 3_4:-5283717 | Msa0486980:three_prime_UTR |
| TGGATACCCTTGAGCTGTGT+CGG | 0.553060 | 3_4:+5285291 | None:intergenic |
| GTAGATGCTGTTCATGCTAA+AGG | 0.560685 | 3_4:-5285217 | Msa0486980:CDS |
| CCAATGAGAAAGGCTTTCAA+TGG | 0.561406 | 3_4:-5284096 | Msa0486980:CDS |
| AAGCCTTTCTCATTGGCACA+AGG | 0.563142 | 3_4:+5284103 | None:intergenic |
| TAGAGGACAACATGTGGTTG+AGG | 0.573654 | 3_4:+5285370 | None:intergenic |
| GGTGTATCCGACACAGCTCA+AGG | 0.574972 | 3_4:-5285298 | Msa0486980:CDS |
| TAGTCCGTATAACCTACAAC+CGG | 0.576852 | 3_4:+5283895 | None:intergenic |
| CAATATTCTTTACTGTCACA+TGG | 0.576936 | 3_4:-5284175 | Msa0486980:CDS |
| AGCTTCAATAGCATTTCTTG+CGG | 0.576970 | 3_4:+5284625 | None:intergenic |
| TTTGATGGTATCGAAATCCA+TGG | 0.580196 | 3_4:-5284438 | Msa0486980:CDS |
| CAAGGGTATCCAGACAGCCC+AGG | 0.584387 | 3_4:-5285280 | Msa0486980:CDS |
| GGCACTTTCATGGTTGCGGG+AGG | 0.587792 | 3_4:-5284075 | Msa0486980:CDS |
| AATGACAGAACAGATGAATA+CGG | 0.588235 | 3_4:-5284372 | Msa0486980:CDS |
| GAAATCGACAACGATTCTCA+AGG | 0.593087 | 3_4:+5284343 | None:intergenic |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 3_4:+5284421 | None:intergenic |
| GGAGGCTATGACAGACAAGA+CGG | 0.604358 | 3_4:-5284057 | Msa0486980:CDS |
| TAGGATCTTATTCTAGTGAG+TGG | 0.614903 | 3_4:+5285403 | None:intergenic |
| GAGGCTATGACAGACAAGAC+GGG | 0.616560 | 3_4:-5284056 | Msa0486980:CDS |
| CAATGCTATAGCTGAAAACA+GGG | 0.617928 | 3_4:-5284031 | Msa0486980:CDS |
| ATCTTGTAAGGTGTAAGAAG+AGG | 0.620167 | 3_4:+5285555 | None:intergenic |
| ATATGCAATTCAATTTGAGA+GGG | 0.622130 | 3_4:+5285664 | None:intergenic |
| TGGTTGAGGAACATTGCCAT+AGG | 0.622865 | 3_4:+5285384 | None:intergenic |
| ACTGCTTCAACAATTTCCAA+AGG | 0.625347 | 3_4:+5284321 | None:intergenic |
| GCTCTTTAGTCCATACACCT+GGG | 0.629153 | 3_4:+5285263 | None:intergenic |
| AAATCGACAACGATTCTCAA+GGG | 0.633730 | 3_4:+5284344 | None:intergenic |
| TTTGCTGAATATGCAGAAAG+CGG | 0.633878 | 3_4:-5284252 | Msa0486980:CDS |
| TCTCAAAGGTCCTCTAAAGG+TGG | 0.638482 | 3_4:-5285343 | Msa0486980:CDS |
| CTAAAGAGCAAGTTGAGGCG+TGG | 0.641191 | 3_4:-5285249 | Msa0486980:CDS |
| GACTTCATATGACTTAAGGA+TGG | 0.656688 | 3_4:+5283186 | None:intergenic |
| GTGTATCCGACACAGCTCAA+GGG | 0.660265 | 3_4:-5285297 | Msa0486980:CDS |
| TGTACTGTAGCATCCAAGGT+TGG | 0.667688 | 3_4:-5283845 | Msa0486980:three_prime_UTR |
| TATTCTTTACTGTCACATGG+TGG | 0.684787 | 3_4:-5284172 | Msa0486980:CDS |
| GAGTAATAGAGGACAACATG+TGG | 0.696474 | 3_4:+5285364 | None:intergenic |
| GACAGAACAGATGAATACGG+TGG | 0.702185 | 3_4:-5284369 | Msa0486980:CDS |
| TCTGTCCCAAGCCTTCTCGG+TGG | 0.708391 | 3_4:+5284683 | None:intergenic |
| ATGGACTAAAGAGCAAGTTG+AGG | 0.730636 | 3_4:-5285254 | Msa0486980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAATACTAAAAAATAA+CGG | + | chr3_4:5283914-5283933 | None:intergenic | 10.0% |
| !! | AAAAAACTAATTAAATTTGA+AGG | + | chr3_4:5284985-5285004 | None:intergenic | 10.0% |
| !!! | TCACATTAATTTGATTTAAT+TGG | - | chr3_4:5283178-5283197 | Msa0486980:three_prime_UTR | 15.0% |
| !!! | ATTGAAATTGAAAGTATAAT+AGG | + | chr3_4:5283294-5283313 | None:intergenic | 15.0% |
| !! | AATAATCTTCAAATTATATG+AGG | + | chr3_4:5283677-5283696 | None:intergenic | 15.0% |
| !!! | AATTTGAAGATTATTTTAGT+TGG | - | chr3_4:5283682-5283701 | Msa0486980:three_prime_UTR | 15.0% |
| !!! | CATTAATTTGATTTAATTGG+TGG | - | chr3_4:5283181-5283200 | Msa0486980:three_prime_UTR | 20.0% |
| !! | ATACTTTCAATTTCAATGTT+AGG | - | chr3_4:5283297-5283316 | Msa0486980:intron | 20.0% |
| !!! | TACTAAAAAATAACGGATTT+GGG | + | chr3_4:5283907-5283926 | None:intergenic | 20.0% |
| !!! | ATACTAAAAAATAACGGATT+TGG | + | chr3_4:5283908-5283927 | None:intergenic | 20.0% |
| !! | TAGTATTATTACTACTACTA+AGG | - | chr3_4:5283922-5283941 | Msa0486980:CDS | 20.0% |
| !! | AGTATTATTACTACTACTAA+GGG | - | chr3_4:5283923-5283942 | Msa0486980:CDS | 20.0% |
| !! | AAGAATATTGTACTTATTGA+GGG | + | chr3_4:5284611-5284630 | None:intergenic | 20.0% |
| !! | AAAGAATATTGTACTTATTG+AGG | + | chr3_4:5284612-5284631 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTCATTCAAGAAA+TGG | + | chr3_4:5284928-5284947 | None:intergenic | 20.0% |
| !!! | TTTTATTCATACTAGCTTAT+CGG | - | chr3_4:5285074-5285093 | Msa0486980:intron | 20.0% |
| !! | CTTATATGGTATAAAATATC+AGG | + | chr3_4:5285137-5285156 | None:intergenic | 20.0% |
| !! | AAAGCTAGAAAAATAAATGA+TGG | + | chr3_4:5285234-5285253 | None:intergenic | 20.0% |
| !! | TATTCATGTATGTTAACTAA+AGG | - | chr3_4:5285285-5285304 | Msa0486980:CDS | 20.0% |
| ! | ATATGCAATTCAATTTGAGA+GGG | + | chr3_4:5283135-5283154 | None:intergenic | 25.0% |
| ! | AATATGCAATTCAATTTGAG+AGG | + | chr3_4:5283136-5283155 | None:intergenic | 25.0% |
| !! | TTTAATTGGTGGTATCAAAA+TGG | - | chr3_4:5283192-5283211 | Msa0486980:intron | 25.0% |
| !!! | TTGAAGATTATTTTAGTTGG+AGG | - | chr3_4:5283685-5283704 | Msa0486980:three_prime_UTR | 25.0% |
| !! | TTGTTATTGTTGGATTTAGA+TGG | - | chr3_4:5283708-5283727 | Msa0486980:three_prime_UTR | 25.0% |
| ! | CAAAACTATCCAATCAATAT+TGG | + | chr3_4:5283840-5283859 | None:intergenic | 25.0% |
| ! | GTATTATTACTACTACTAAG+GGG | - | chr3_4:5283924-5283943 | Msa0486980:CDS | 25.0% |
| ! | AAAACCTGTTGAGAATAAAA+TGG | + | chr3_4:5284021-5284040 | None:intergenic | 25.0% |
| !!! | TACTGATATTTTTCAGAAAC+AGG | - | chr3_4:5284259-5284278 | Msa0486980:CDS | 25.0% |
| !!! | AGGACTATTTGTTGATTTAA+AGG | - | chr3_4:5284279-5284298 | Msa0486980:CDS | 25.0% |
| !!! | GGACTATTTGTTGATTTAAA+GGG | - | chr3_4:5284280-5284299 | Msa0486980:CDS | 25.0% |
| ! | TAGTCTAATTCCAACTTTAT+CGG | + | chr3_4:5284518-5284537 | None:intergenic | 25.0% |
| ! | TCCTCTTAACAAGTATAATA+GGG | - | chr3_4:5284858-5284877 | Msa0486980:intron | 25.0% |
| ! | ACTAAAAAAACAAATGTGCA+AGG | + | chr3_4:5285010-5285029 | None:intergenic | 25.0% |
| ! | TTTATACCATATAAGCTTTG+TGG | - | chr3_4:5285142-5285161 | Msa0486980:intron | 25.0% |
| ! | TATGTACATTATCATGTTGA+TGG | + | chr3_4:5285267-5285286 | None:intergenic | 25.0% |
| ! | AAGTTCCAAAGAAAACTAAA+TGG | - | chr3_4:5285396-5285415 | Msa0486980:CDS | 25.0% |
| ! | ACTACTACCTTGATTTAAAT+AGG | - | chr3_4:5285557-5285576 | Msa0486980:CDS | 25.0% |
| ! | TGGTGAAACTATAGAAAATT+TGG | + | chr3_4:5285593-5285612 | None:intergenic | 25.0% |
| ! | CTACATTCTTTTGTCAGATT+TGG | - | chr3_4:5283604-5283623 | Msa0486980:intron | 30.0% |
| ! | GTTGGAAGATTTTCAAATTC+AGG | - | chr3_4:5283630-5283649 | Msa0486980:intron | 30.0% |
| AAATTCTTGAGCTTGAAATC+TGG | - | chr3_4:5283809-5283828 | Msa0486980:three_prime_UTR | 30.0% | |
| ACTATCCAATCAATATTGGA+CGG | + | chr3_4:5283836-5283855 | None:intergenic | 30.0% | |
| TATTGAAGCTGGTAAATTTG+TGG | - | chr3_4:5284184-5284203 | Msa0486980:CDS | 30.0% | |
| ! | GATTGAAGCACATTTCATTT+TGG | + | chr3_4:5284226-5284245 | None:intergenic | 30.0% |
| CTTTCATGAATTGTTCAAGT+AGG | + | chr3_4:5284396-5284415 | None:intergenic | 30.0% | |
| AATGACAGAACAGATGAATA+CGG | - | chr3_4:5284424-5284443 | Msa0486980:CDS | 30.0% | |
| CAATATTCTTTACTGTCACA+TGG | - | chr3_4:5284621-5284640 | Msa0486980:intron | 30.0% | |
| !! | TCAGAAGCTGATTTTATTCT+TGG | + | chr3_4:5284652-5284671 | None:intergenic | 30.0% |
| CTCCTCTTAACAAGTATAAT+AGG | - | chr3_4:5284857-5284876 | Msa0486980:intron | 30.0% | |
| ! | TCCCTATTATACTTGTTAAG+AGG | + | chr3_4:5284862-5284881 | None:intergenic | 30.0% |
| AACATTCTACATTTCTGATC+CGG | - | chr3_4:5284882-5284901 | Msa0486980:intron | 30.0% | |
| TATCAACCACAAAGCTTATA+TGG | + | chr3_4:5285151-5285170 | None:intergenic | 30.0% | |
| ! | ATATAAGCTTTGTGGTTGAT+AGG | - | chr3_4:5285150-5285169 | Msa0486980:intron | 30.0% |
| TTCTTCTTCTCTTTAATTCC+GGG | + | chr3_4:5285178-5285197 | None:intergenic | 30.0% | |
| CTTCTTCTTCTCTTTAATTC+CGG | + | chr3_4:5285179-5285198 | None:intergenic | 30.0% | |
| ATTGTTAGGATAAACTGCTA+AGG | + | chr3_4:5285324-5285343 | None:intergenic | 30.0% | |
| TCTTGGTGAATTGACAAAAA+AGG | - | chr3_4:5285343-5285362 | Msa0486980:CDS | 30.0% | |
| !!! | AGCTTCCATTTAGTTTTCTT+TGG | + | chr3_4:5285404-5285423 | None:intergenic | 30.0% |
| TTCAGCTCCTATTTAAATCA+AGG | + | chr3_4:5285567-5285586 | None:intergenic | 30.0% | |
| ATGAGACTTCATATGACTTA+AGG | + | chr3_4:5285617-5285636 | None:intergenic | 30.0% | |
| CATGAATGAGTAAATACTCA+TGG | - | chr3_4:5285634-5285653 | Msa0486980:five_prime_UTR | 30.0% | |
| AATTTGAGAGGGAGTTGTTA+GGG | + | chr3_4:5283124-5283143 | None:intergenic | 35.0% | |
| TAAGGTGTAAGAAGAGGAAT+GGG | + | chr3_4:5283238-5283257 | None:intergenic | 35.0% | |
| ATCTTGTAAGGTGTAAGAAG+AGG | + | chr3_4:5283244-5283263 | None:intergenic | 35.0% | |
| TCTTCTTACACCTTACAAGA+TGG | - | chr3_4:5283243-5283262 | Msa0486980:intron | 35.0% | |
| CTTCTTACACCTTACAAGAT+GGG | - | chr3_4:5283244-5283263 | Msa0486980:intron | 35.0% | |
| TTGAATTTGCCCATCTTGTA+AGG | + | chr3_4:5283256-5283275 | None:intergenic | 35.0% | |
| GCAAATTCAATCTCTCTCAT+AGG | - | chr3_4:5283266-5283285 | Msa0486980:intron | 35.0% | |
| GGAGGTTAATTAGCAAAACA+AGG | + | chr3_4:5283351-5283370 | None:intergenic | 35.0% | |
| ! | AAAACAACTCTGAAAATGGG+AGG | + | chr3_4:5283369-5283388 | None:intergenic | 35.0% |
| ! | TCCCATTTTCAGAGTTGTTT+TGG | - | chr3_4:5283368-5283387 | Msa0486980:intron | 35.0% |
| ! | GCCAAAACAACTCTGAAAAT+GGG | + | chr3_4:5283372-5283391 | None:intergenic | 35.0% |
| ! | TGCCAAAACAACTCTGAAAA+TGG | + | chr3_4:5283373-5283392 | None:intergenic | 35.0% |
| TAGGATCTTATTCTAGTGAG+TGG | + | chr3_4:5283396-5283415 | None:intergenic | 35.0% | |
| CTCACTAGAATAAGATCCTA+TGG | - | chr3_4:5283396-5283415 | Msa0486980:intron | 35.0% | |
| TTGTCCTCTATTACTCTCAA+AGG | - | chr3_4:5283439-5283458 | Msa0486980:intron | 35.0% | |
| TATAAGAAGACCACCTTTAG+AGG | + | chr3_4:5283466-5283485 | None:intergenic | 35.0% | |
| ! | TTTTGTCAGATTTGGCATGT+TGG | - | chr3_4:5283612-5283631 | Msa0486980:intron | 35.0% |
| ! | TAGTTGGAGGTTGTTATTGT+TGG | - | chr3_4:5283698-5283717 | Msa0486980:three_prime_UTR | 35.0% |
| ATTGTTGGATTTAGATGGTG+TGG | - | chr3_4:5283713-5283732 | Msa0486980:three_prime_UTR | 35.0% | |
| ! | GTGTCCATTTTATTCTCAAC+AGG | - | chr3_4:5284014-5284033 | Msa0486980:CDS | 35.0% |
| CTGAAGTCATTGACAATATC+AGG | + | chr3_4:5284146-5284165 | None:intergenic | 35.0% | |
| AGCTTCAATAGCATTTCTTG+CGG | + | chr3_4:5284174-5284193 | None:intergenic | 35.0% | |
| CTCAATTTGATGCAAATTGC+AGG | - | chr3_4:5284334-5284353 | Msa0486980:CDS | 35.0% | |
| !! | ATGCAAATTGCAGGTTTTGA+TGG | - | chr3_4:5284343-5284362 | Msa0486980:CDS | 35.0% |
| ! | TTTGATGGTATCGAAATCCA+TGG | - | chr3_4:5284358-5284377 | Msa0486980:CDS | 35.0% |
| AAATCGACAACGATTCTCAA+GGG | + | chr3_4:5284455-5284474 | None:intergenic | 35.0% | |
| ACTGCTTCAACAATTTCCAA+AGG | + | chr3_4:5284478-5284497 | None:intergenic | 35.0% | |
| GAAGCAGTTGTAAATGAGAT+AGG | - | chr3_4:5284490-5284509 | Msa0486980:intron | 35.0% | |
| CTTTCTGCATATTCAGCAAA+TGG | + | chr3_4:5284544-5284563 | None:intergenic | 35.0% | |
| TTTGCTGAATATGCAGAAAG+CGG | - | chr3_4:5284544-5284563 | Msa0486980:intron | 35.0% | |
| AGACTCTAATCCAAATGCAT+TGG | - | chr3_4:5284567-5284586 | Msa0486980:intron | 35.0% | |
| GACTCTAATCCAAATGCATT+GGG | - | chr3_4:5284568-5284587 | Msa0486980:intron | 35.0% | |
| ATATGAAGTCCCAATGCATT+TGG | + | chr3_4:5284580-5284599 | None:intergenic | 35.0% | |
| AAATGCATTGGGACTTCATA+TGG | - | chr3_4:5284579-5284598 | Msa0486980:intron | 35.0% | |
| TATTCTTTACTGTCACATGG+TGG | - | chr3_4:5284624-5284643 | Msa0486980:CDS | 35.0% | |
| TCAATGCTATAGCTGAAAAC+AGG | - | chr3_4:5284764-5284783 | Msa0486980:intron | 35.0% | |
| CAATGCTATAGCTGAAAACA+GGG | - | chr3_4:5284765-5284784 | Msa0486980:intron | 35.0% | |
| ! | AGAAGAAGCGTATTCGAAAA+TGG | - | chr3_4:5285191-5285210 | Msa0486980:CDS | 35.0% |
| GCAGTTTATCCTAACAATCT+TGG | - | chr3_4:5285326-5285345 | Msa0486980:CDS | 35.0% | |
| GTCAATTCACCAAGATTGTT+AGG | + | chr3_4:5285338-5285357 | None:intergenic | 35.0% | |
| GACTTCATATGACTTAAGGA+TGG | + | chr3_4:5285613-5285632 | None:intergenic | 35.0% | |
| CAATTTGAGAGGGAGTTGTT+AGG | + | chr3_4:5283125-5283144 | None:intergenic | 40.0% | |
| GTAAGGTGTAAGAAGAGGAA+TGG | + | chr3_4:5283239-5283258 | None:intergenic | 40.0% | |
| GAGTAATAGAGGACAACATG+TGG | + | chr3_4:5283435-5283454 | None:intergenic | 40.0% | |
| ! | AGGACCTTTGAGAGTAATAG+AGG | + | chr3_4:5283446-5283465 | None:intergenic | 40.0% |
| TACTCTCAAAGGTCCTCTAA+AGG | - | chr3_4:5283450-5283469 | Msa0486980:intron | 40.0% | |
| ! | ATGGACTAAAGAGCAAGTTG+AGG | - | chr3_4:5283542-5283561 | Msa0486980:intron | 40.0% |
| GCATGAACAGCATCTACAAT+AGG | + | chr3_4:5283576-5283595 | None:intergenic | 40.0% | |
| GTAGATGCTGTTCATGCTAA+AGG | - | chr3_4:5283579-5283598 | Msa0486980:intron | 40.0% | |
| GACTTGTCGGTAGAAGATAT+CGG | + | chr3_4:5284062-5284081 | None:intergenic | 40.0% | |
| ! | ATTGCTTGTGAGTGACTTGT+CGG | + | chr3_4:5284075-5284094 | None:intergenic | 40.0% |
| GCAAGAAATGCTATTGAAGC+TGG | - | chr3_4:5284173-5284192 | Msa0486980:CDS | 40.0% | |
| GAAATCGACAACGATTCTCA+AGG | + | chr3_4:5284456-5284475 | None:intergenic | 40.0% | |
| !! | GAATCGTTGTCGATTTCCTT+TGG | - | chr3_4:5284459-5284478 | Msa0486980:intron | 40.0% |
| CCATTGAAAGCCTTTCTCAT+TGG | + | chr3_4:5284703-5284722 | None:intergenic | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+TGG | - | chr3_4:5284700-5284719 | Msa0486980:CDS | 40.0% | |
| AGGGCAGATCTTGTAGTTTA+TGG | - | chr3_4:5284784-5284803 | Msa0486980:intron | 40.0% | |
| GCATTAAGTGCAAACCTCTT+TGG | + | chr3_4:5284838-5284857 | None:intergenic | 40.0% | |
| TACATTTCTGATCCGGTTGT+AGG | - | chr3_4:5284889-5284908 | Msa0486980:intron | 40.0% | |
| TGATCCGGTTGTAGGTTATA+CGG | - | chr3_4:5284897-5284916 | Msa0486980:intron | 40.0% | |
| TAGTCCGTATAACCTACAAC+CGG | + | chr3_4:5284904-5284923 | None:intergenic | 40.0% | |
| ! | TTCATACTAGCTTATCGGCT+AGG | - | chr3_4:5285079-5285098 | Msa0486980:intron | 40.0% |
| TTTGCAAACAAGCAATTGCC+AGG | + | chr3_4:5285462-5285481 | None:intergenic | 40.0% | |
| TGGTTGAGGAACATTGCCAT+AGG | + | chr3_4:5283415-5283434 | None:intergenic | 45.0% | |
| TAGAGGACAACATGTGGTTG+AGG | + | chr3_4:5283429-5283448 | None:intergenic | 45.0% | |
| ! | TCTCAAAGGTCCTCTAAAGG+TGG | - | chr3_4:5283453-5283472 | Msa0486980:intron | 45.0% |
| CTTCTTATAGCCGAAGCTAC+TGG | - | chr3_4:5283477-5283496 | Msa0486980:intron | 45.0% | |
| GCTCTTTAGTCCATACACCT+GGG | + | chr3_4:5283536-5283555 | None:intergenic | 45.0% | |
| TGCTCTTTAGTCCATACACC+TGG | + | chr3_4:5283537-5283556 | None:intergenic | 45.0% | |
| GCAGTCAACCACATCAAGAT+CGG | - | chr3_4:5283747-5283766 | Msa0486980:three_prime_UTR | 45.0% | |
| CTAGACAACCGATCTTGATG+TGG | + | chr3_4:5283758-5283777 | None:intergenic | 45.0% | |
| CTGGACCGTCCAATATTGAT+TGG | - | chr3_4:5283828-5283847 | Msa0486980:three_prime_UTR | 45.0% | |
| ! | TCAACAGGTTTTCAGCCGAA+TGG | - | chr3_4:5284029-5284048 | Msa0486980:CDS | 45.0% |
| ! | GATATCGGTGCTTGTCCATT+CGG | + | chr3_4:5284047-5284066 | None:intergenic | 45.0% |
| AAAAATTCTCGCCACCGAGA+AGG | - | chr3_4:5284102-5284121 | Msa0486980:CDS | 45.0% | |
| ATCGAAATCCATGGAGCTCA+TGG | - | chr3_4:5284367-5284386 | Msa0486980:CDS | 45.0% | |
| GACAGAACAGATGAATACGG+TGG | - | chr3_4:5284427-5284446 | Msa0486980:CDS | 45.0% | |
| GAGATAGGAGCCGATAAAGT+TGG | - | chr3_4:5284505-5284524 | Msa0486980:intron | 45.0% | |
| TCATTGGCACAAGGCTGTAA+GGG | + | chr3_4:5284687-5284706 | None:intergenic | 45.0% | |
| AAGCCTTTCTCATTGGCACA+AGG | + | chr3_4:5284696-5284715 | None:intergenic | 45.0% | |
| GGCTTTCAATGGCACTTTCA+TGG | - | chr3_4:5284711-5284730 | Msa0486980:CDS | 45.0% | |
| CAATGGCACTTTCATGGTTG+CGG | - | chr3_4:5284717-5284736 | Msa0486980:CDS | 45.0% | |
| AATGGCACTTTCATGGTTGC+GGG | - | chr3_4:5284718-5284737 | Msa0486980:CDS | 45.0% | |
| CGAATCCAGATTTGCCAAAG+AGG | - | chr3_4:5284821-5284840 | Msa0486980:intron | 45.0% | |
| GCAAACCTCTTTGGCAAATC+TGG | + | chr3_4:5284829-5284848 | None:intergenic | 45.0% | |
| ATGCTGTACTGTAGCATCCA+AGG | - | chr3_4:5284947-5284966 | Msa0486980:intron | 45.0% | |
| TGTACTGTAGCATCCAAGGT+TGG | - | chr3_4:5284951-5284970 | Msa0486980:intron | 45.0% | |
| !! | CTTTGTGGTTGATAGGATCC+CGG | - | chr3_4:5285157-5285176 | Msa0486980:intron | 45.0% |
| !!! | TTTTTTATTTATATTCAAAT+TGG | + | chr3_4:5285670-5285689 | None:intergenic | 5.0% |
| GTCGGATACACCAGTAGCTT+CGG | + | chr3_4:5283490-5283509 | None:intergenic | 50.0% | |
| GTGTATCCGACACAGCTCAA+GGG | - | chr3_4:5283499-5283518 | Msa0486980:intron | 50.0% | |
| TGGATACCCTTGAGCTGTGT+CGG | + | chr3_4:5283508-5283527 | None:intergenic | 50.0% | |
| ! | CTAAAGAGCAAGTTGAGGCG+TGG | - | chr3_4:5283547-5283566 | Msa0486980:intron | 50.0% |
| TCATCTGTCCCAAGCCTTCT+CGG | + | chr3_4:5284119-5284138 | None:intergenic | 50.0% | |
| CTCATTGGCACAAGGCTGTA+AGG | + | chr3_4:5284688-5284707 | None:intergenic | 50.0% | |
| ! | CAGCCTTGTGCCAATGAGAA+AGG | - | chr3_4:5284690-5284709 | Msa0486980:CDS | 50.0% |
| GGAGGCTATGACAGACAAGA+CGG | - | chr3_4:5284739-5284758 | Msa0486980:CDS | 50.0% | |
| GAGGCTATGACAGACAAGAC+GGG | - | chr3_4:5284740-5284759 | Msa0486980:CDS | 50.0% | |
| GTAGCATCCAAGGTTGGAAG+TGG | - | chr3_4:5284957-5284976 | Msa0486980:intron | 50.0% | |
| GAAGGTTCCACTTCCAACCT+TGG | + | chr3_4:5284967-5284986 | None:intergenic | 50.0% | |
| AATGCCACACAACTAGCACC+TGG | - | chr3_4:5285441-5285460 | Msa0486980:intron | 50.0% | |
| ATTGCCAGGTGCTAGTTGTG+TGG | + | chr3_4:5285448-5285467 | None:intergenic | 50.0% | |
| GGTGTATCCGACACAGCTCA+AGG | - | chr3_4:5283498-5283517 | Msa0486980:intron | 55.0% | |
| ATCCAGACAGCCCAGGTGTA+TGG | - | chr3_4:5283523-5283542 | Msa0486980:intron | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | + | chr3_4:5284378-5284397 | None:intergenic | 55.0% | |
| !! | CAAGGGTATCCAGACAGCCC+AGG | - | chr3_4:5283516-5283535 | Msa0486980:intron | 60.0% |
| GTCCATACACCTGGGCTGTC+TGG | + | chr3_4:5283528-5283547 | None:intergenic | 60.0% | |
| TTCTCGCCACCGAGAAGGCT+TGG | - | chr3_4:5284107-5284126 | Msa0486980:CDS | 60.0% | |
| TCTCGCCACCGAGAAGGCTT+GGG | - | chr3_4:5284108-5284127 | Msa0486980:CDS | 60.0% | |
| TCTGTCCCAAGCCTTCTCGG+TGG | + | chr3_4:5284116-5284135 | None:intergenic | 60.0% | |
| GGCACTTTCATGGTTGCGGG+AGG | - | chr3_4:5284721-5284740 | Msa0486980:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 5283101 | 5285717 | 5283101 | ID=Msa0486980;Name=Msa0486980 |
| chr3_4 | mRNA | 5283101 | 5285717 | 5283101 | ID=Msa0486980-mRNA-1;Parent=Msa0486980;Name=Msa0486980-mRNA-1;_AED=0.10;_eAED=0.10;_QI=110|1|1|1|0.75|0.6|5|304|363 |
| chr3_4 | exon | 5283101 | 5283206 | 5283101 | ID=Msa0486980-mRNA-1:exon:1991;Parent=Msa0486980-mRNA-1 |
| chr3_4 | exon | 5283681 | 5284462 | 5283681 | ID=Msa0486980-mRNA-1:exon:1990;Parent=Msa0486980-mRNA-1 |
| chr3_4 | exon | 5284624 | 5284782 | 5284624 | ID=Msa0486980-mRNA-1:exon:1989;Parent=Msa0486980-mRNA-1 |
| chr3_4 | exon | 5285167 | 5285438 | 5285167 | ID=Msa0486980-mRNA-1:exon:1988;Parent=Msa0486980-mRNA-1 |
| chr3_4 | exon | 5285531 | 5285717 | 5285531 | ID=Msa0486980-mRNA-1:exon:1987;Parent=Msa0486980-mRNA-1 |
| chr3_4 | five_prime_UTR | 5285608 | 5285717 | 5285608 | ID=Msa0486980-mRNA-1:five_prime_utr;Parent=Msa0486980-mRNA-1 |
| chr3_4 | CDS | 5285531 | 5285607 | 5285531 | ID=Msa0486980-mRNA-1:cds;Parent=Msa0486980-mRNA-1 |
| chr3_4 | CDS | 5285167 | 5285438 | 5285167 | ID=Msa0486980-mRNA-1:cds;Parent=Msa0486980-mRNA-1 |
| chr3_4 | CDS | 5284624 | 5284782 | 5284624 | ID=Msa0486980-mRNA-1:cds;Parent=Msa0486980-mRNA-1 |
| chr3_4 | CDS | 5283879 | 5284462 | 5283879 | ID=Msa0486980-mRNA-1:cds;Parent=Msa0486980-mRNA-1 |
| chr3_4 | three_prime_UTR | 5283681 | 5283878 | 5283681 | ID=Msa0486980-mRNA-1:three_prime_utr;Parent=Msa0486980-mRNA-1 |
| chr3_4 | three_prime_UTR | 5283101 | 5283206 | 5283101 | ID=Msa0486980-mRNA-1:three_prime_utr;Parent=Msa0486980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
