Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489070 | XP_024639103.1 | 92.717 | 357 | 26 | 0 | 7 | 363 | 3 | 359 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489070 | sp|B9FSC8|OPR11_ORYSJ | 74.860 | 358 | 84 | 1 | 11 | 362 | 6 | 363 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489070 | G7K3R3 | 92.437 | 357 | 27 | 0 | 7 | 363 | 3 | 359 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037720 | Msa0489070 | 0.819682 | 1.021620e-52 | -8.615850e-47 |
| Msa0051730 | Msa0489070 | 0.802549 | 5.322868e-49 | -8.615850e-47 |
| Msa0083240 | Msa0489070 | 0.804290 | 2.318967e-49 | -8.615850e-47 |
| Msa0129640 | Msa0489070 | 0.825630 | 4.220218e-54 | -8.615850e-47 |
| Msa0374290 | Msa0489070 | 0.847488 | 1.120500e-59 | -8.615850e-47 |
| Msa0381470 | Msa0489070 | 0.802799 | 4.725378e-49 | -8.615850e-47 |
| Msa0397790 | Msa0489070 | 0.904069 | 1.803604e-79 | -8.615850e-47 |
| Msa0455830 | Msa0489070 | 0.812112 | 4.993728e-51 | -8.615850e-47 |
| Msa0481770 | Msa0489070 | 0.806589 | 7.643216e-50 | -8.615850e-47 |
| Msa0351050 | Msa0489070 | 0.881223 | 2.868340e-70 | -8.615850e-47 |
| Msa0486980 | Msa0489070 | 0.893979 | 3.793027e-75 | -8.615850e-47 |
| Msa0489070 | Msa0593600 | 0.800092 | 1.695127e-48 | -8.615850e-47 |
| Msa0489070 | Msa0749500 | 0.812770 | 3.587477e-51 | -8.615850e-47 |
| Msa0489070 | Msa0749510 | 0.810050 | 1.397302e-50 | -8.615850e-47 |
| Msa0489070 | Msa0831430 | 0.811437 | 7.005050e-51 | -8.615850e-47 |
| Msa0489070 | Msa0865810 | 0.801905 | 7.221056e-49 | -8.615850e-47 |
| Msa0489070 | Msa0881510 | 0.802331 | 5.902605e-49 | -8.615850e-47 |
| Msa0489070 | Msa0982110 | 0.815399 | 9.428866e-52 | -8.615850e-47 |
| Msa0489070 | Msa1412410 | 0.819535 | 1.103458e-52 | -8.615850e-47 |
| Msa0489070 | Msa1427860 | 0.829002 | 6.568585e-55 | -8.615850e-47 |
| Msa0489070 | Msa1453600 | 0.800945 | 1.135577e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489070 | MtrunA17_Chr5g0394751 | 92.437 | 357 | 27 | 0 | 7 | 363 | 3 | 359 | 0.0 | 694 |
| Msa0489070 | MtrunA17_Chr5g0394771 | 89.807 | 363 | 37 | 0 | 1 | 363 | 29 | 391 | 0.0 | 687 |
| Msa0489070 | MtrunA17_Chr5g0394861 | 85.175 | 371 | 47 | 3 | 1 | 363 | 1 | 371 | 0.0 | 649 |
| Msa0489070 | MtrunA17_Chr5g0394891 | 82.656 | 369 | 58 | 1 | 1 | 363 | 1 | 369 | 0.0 | 639 |
| Msa0489070 | MtrunA17_Chr5g0394841 | 80.054 | 371 | 66 | 2 | 1 | 363 | 1 | 371 | 0.0 | 621 |
| Msa0489070 | MtrunA17_Chr5g0394811 | 81.044 | 364 | 63 | 2 | 6 | 363 | 115 | 478 | 0.0 | 620 |
| Msa0489070 | MtrunA17_Chr5g0394811 | 68.702 | 131 | 38 | 1 | 18 | 148 | 1 | 128 | 1.38e-53 | 183 |
| Msa0489070 | MtrunA17_Chr5g0395841 | 78.533 | 368 | 73 | 1 | 1 | 362 | 3 | 370 | 0.0 | 612 |
| Msa0489070 | MtrunA17_Chr3g0144001 | 69.589 | 365 | 107 | 2 | 1 | 363 | 1 | 363 | 0.0 | 540 |
| Msa0489070 | MtrunA17_Chr4g0070561 | 53.514 | 370 | 153 | 3 | 12 | 362 | 19 | 388 | 1.24e-143 | 412 |
| Msa0489070 | MtrunA17_Chr5g0394801 | 67.179 | 195 | 37 | 1 | 161 | 355 | 18 | 185 | 1.55e-85 | 259 |
| Msa0489070 | MtrunA17_Chr5g0394791 | 65.979 | 194 | 54 | 2 | 7 | 194 | 6 | 193 | 2.07e-85 | 257 |
| Msa0489070 | MtrunA17_Chr3g0130471 | 83.721 | 43 | 7 | 0 | 188 | 230 | 1 | 43 | 3.27e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489070 | AT1G76690.1 | 72.900 | 369 | 94 | 1 | 1 | 363 | 3 | 371 | 0.0 | 578 |
| Msa0489070 | AT1G76680.1 | 72.900 | 369 | 94 | 2 | 1 | 363 | 1 | 369 | 0.0 | 577 |
| Msa0489070 | AT1G76680.2 | 68.274 | 394 | 94 | 3 | 1 | 363 | 1 | 394 | 0.0 | 563 |
| Msa0489070 | AT1G09400.1 | 70.062 | 324 | 97 | 0 | 18 | 341 | 1 | 324 | 0.0 | 505 |
| Msa0489070 | AT1G09400.2 | 71.212 | 264 | 76 | 0 | 78 | 341 | 2 | 265 | 7.66e-147 | 416 |
| Msa0489070 | AT2G06050.2 | 51.429 | 385 | 164 | 3 | 1 | 362 | 1 | 385 | 6.63e-141 | 405 |
| Msa0489070 | AT2G06050.1 | 51.429 | 385 | 164 | 3 | 1 | 362 | 1 | 385 | 6.63e-141 | 405 |
| Msa0489070 | AT2G06050.3 | 51.429 | 385 | 164 | 3 | 1 | 362 | 1 | 385 | 6.63e-141 | 405 |
| Msa0489070 | AT1G17990.1 | 70.155 | 258 | 74 | 2 | 5 | 260 | 2 | 258 | 7.58e-138 | 393 |
| Msa0489070 | AT1G18020.1 | 70.155 | 258 | 74 | 2 | 5 | 260 | 2 | 258 | 7.58e-138 | 393 |
| Msa0489070 | AT1G17990.2 | 67.054 | 258 | 74 | 3 | 5 | 260 | 2 | 250 | 4.59e-129 | 370 |
Find 103 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATTAATTTGATTTAAT+TGG | 0.198344 | 3_4:-9238172 | Msa0489070:five_prime_UTR |
| GCAAATCTCTTTGGCAAATC+TGG | 0.201994 | 3_4:+9236546 | None:intergenic |
| AAATGCATTGGGACTTTATA+TGG | 0.214696 | 3_4:-9236793 | Msa0489070:CDS |
| CTCCTCTTAACAAGTATAAT+AGG | 0.228308 | 3_4:-9236515 | Msa0489070:CDS |
| AGGGCAGATCTTGTAGTTTA+TGG | 0.251067 | 3_4:-9236588 | Msa0489070:CDS |
| CTGAAGTCATTGACAATATC+AGG | 0.283543 | 3_4:+9237225 | None:intergenic |
| TTTAATTGGTGGTATCAAAA+TGG | 0.293740 | 3_4:-9238158 | Msa0489070:exon |
| TAGTCTAATTCCAACTTTAT+CGG | 0.320112 | 3_4:+9236857 | None:intergenic |
| ATCCAGACAGCCCAGGTATA+TGG | 0.329383 | 3_4:-9237838 | Msa0489070:CDS |
| CAATTTGAGAGGGAGTTGTT+AGG | 0.341045 | 3_4:+9238231 | None:intergenic |
| TATAAGAAGACCACCTTTAG+AGG | 0.341560 | 3_4:+9237898 | None:intergenic |
| GGCTTTCAATGGCACTTTCA+TGG | 0.346532 | 3_4:-9236661 | Msa0489070:CDS |
| ATGAGACTTCATATGACTTA+AGG | 0.350018 | 3_4:+9235758 | None:intergenic |
| ATATAAAGTCCCAATGCATT+TGG | 0.354102 | 3_4:+9236795 | None:intergenic |
| GCATTAAGTGCAAATCTCTT+TGG | 0.366938 | 3_4:+9236537 | None:intergenic |
| CTCATTGGCACAAGGCTGTA+AGG | 0.367432 | 3_4:+9236687 | None:intergenic |
| GAATCGTTGTCGATTTCCTT+TGG | 0.368620 | 3_4:-9236913 | Msa0489070:CDS |
| TCCCTATTATACTTGTTAAG+AGG | 0.369675 | 3_4:+9236513 | None:intergenic |
| TCATCTGTCCCAAGCCTTCT+CGG | 0.370065 | 3_4:+9237252 | None:intergenic |
| CAATGGCACTTTCATGGTTG+CGG | 0.371044 | 3_4:-9236655 | Msa0489070:CDS |
| GTCCATATACCTGGGCTGTC+TGG | 0.372045 | 3_4:+9237836 | None:intergenic |
| TCAATGCTATAGCTGAAAAC+AGG | 0.375838 | 3_4:-9236608 | Msa0489070:CDS |
| TGATCCGGTTGTAGGTTATA+CGG | 0.380846 | 3_4:-9236475 | Msa0489070:CDS |
| TACATTTCTGATCCGGTTGT+AGG | 0.387959 | 3_4:-9236483 | Msa0489070:CDS |
| AATGGCACTTTCATGGTTGC+GGG | 0.393208 | 3_4:-9236654 | Msa0489070:CDS |
| TTGAATTTGCCCATCTTGTA+AGG | 0.401075 | 3_4:+9238097 | None:intergenic |
| TTCTCGCCACCGAGAAGGCT+TGG | 0.405740 | 3_4:-9237261 | Msa0489070:CDS |
| TCCTCTTAACAAGTATAATA+GGG | 0.406224 | 3_4:-9236514 | Msa0489070:CDS |
| AAAGAATATTGTACTTATTG+AGG | 0.409340 | 3_4:+9236763 | None:intergenic |
| CCATTGAAAGCCTTTCTCAT+TGG | 0.410004 | 3_4:+9236672 | None:intergenic |
| AGGACCTTTGAGAGTAATAG+AGG | 0.421466 | 3_4:+9237918 | None:intergenic |
| GCAAATTCAATCTCTCTCAT+AGG | 0.425449 | 3_4:-9238084 | Msa0489070:intron |
| GCATGAACAGCATCTACAAC+AGG | 0.426710 | 3_4:+9237788 | None:intergenic |
| AACATTCTACATTTCTGATC+CGG | 0.427062 | 3_4:-9236490 | Msa0489070:CDS |
| CAGCCTTGTGCCAATGAGAA+AGG | 0.431994 | 3_4:-9236682 | Msa0489070:CDS |
| GAAGCAGTTGTAAATGAGAT+AGG | 0.432088 | 3_4:-9236882 | Msa0489070:CDS |
| CATTAATTTGATTTAATTGG+TGG | 0.432365 | 3_4:-9238169 | Msa0489070:five_prime_UTR |
| CTTTCTGCATATTCAGCAAA+TGG | 0.438653 | 3_4:+9236831 | None:intergenic |
| GACTCTAATCCAAATGCATT+GGG | 0.453689 | 3_4:-9236804 | Msa0489070:CDS |
| AATTTGAGAGGGAGTTGTTA+GGG | 0.454555 | 3_4:+9238232 | None:intergenic |
| TGCTCTTTAGTCCATATACC+TGG | 0.459561 | 3_4:+9237827 | None:intergenic |
| GAAGGTTCCACTTCCAACCT+TGG | 0.461724 | 3_4:+9236408 | None:intergenic |
| AAGAATATTGTACTTATTGA+GGG | 0.462924 | 3_4:+9236764 | None:intergenic |
| GAGATAGGAGCCGATAAAGT+TGG | 0.478784 | 3_4:-9236867 | Msa0489070:CDS |
| GTCGGATACACCAGTAGCTT+CGG | 0.479603 | 3_4:+9237874 | None:intergenic |
| CTCACTAGAATAAGATCCTA+TGG | 0.486036 | 3_4:-9237965 | Msa0489070:CDS |
| TCTTCTTACACCTTACAAGA+TGG | 0.486533 | 3_4:-9238107 | Msa0489070:CDS |
| TCTCGCCACCGAGAAGGCTT+GGG | 0.486835 | 3_4:-9237260 | Msa0489070:CDS |
| ATTGCTTGTGAGTGACTTGT+CGG | 0.493116 | 3_4:+9237296 | None:intergenic |
| GATATCGGTACTTGTCCATT+CGG | 0.496953 | 3_4:+9237324 | None:intergenic |
| CTTCTTATAGCCGAAGCTAC+TGG | 0.505350 | 3_4:-9237884 | Msa0489070:CDS |
| AGACTCTAATCCAAATGCAT+TGG | 0.510548 | 3_4:-9236805 | Msa0489070:CDS |
| CATGAATGAGTAAATACTCA+TGG | 0.511959 | 3_4:-9235738 | Msa0489070:three_prime_UTR |
| TAAGGTGTAAGAAGAGGAAT+GGG | 0.514396 | 3_4:+9238115 | None:intergenic |
| TTGTCCTCTATTACTCTCAA+AGG | 0.525613 | 3_4:-9237922 | Msa0489070:CDS |
| TCATTGGCACAAGGCTGTAA+GGG | 0.525679 | 3_4:+9236688 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.528089 | 3_4:-9237195 | Msa0489070:intron |
| GTAAGGTGTAAGAAGAGGAA+TGG | 0.528759 | 3_4:+9238114 | None:intergenic |
| GTAGCATCCAAGGTTGGAAG+TGG | 0.529512 | 3_4:-9236415 | Msa0489070:three_prime_UTR |
| TACTCTCAAAGGTCCTCTAA+AGG | 0.530036 | 3_4:-9237911 | Msa0489070:CDS |
| ATGCTGTACTGTAGCATCCA+AGG | 0.530490 | 3_4:-9236425 | Msa0489070:three_prime_UTR |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 3_4:+9236979 | None:intergenic |
| AATATGCAATTCAATTTGAG+AGG | 0.530530 | 3_4:+9238220 | None:intergenic |
| GACTTGTCGGTAGAAGATAT+CGG | 0.532421 | 3_4:+9237309 | None:intergenic |
| GTCGAAATCCATGGAGCTCA+TGG | 0.534699 | 3_4:-9237005 | Msa0489070:CDS |
| TTCATACTAGCTTCTCGGCT+AGG | 0.535731 | 3_4:-9236293 | Msa0489070:three_prime_UTR |
| TTTGATGGTGTCGAAATCCA+TGG | 0.539312 | 3_4:-9237014 | Msa0489070:CDS |
| CTTCTTACACCTTACAAGAT+GGG | 0.542433 | 3_4:-9238106 | Msa0489070:CDS |
| GTAGATGCTGTTCATGCTAA+AGG | 0.548123 | 3_4:-9237782 | Msa0489070:CDS |
| TGGATACCCTTGAGCTGTGT+CGG | 0.553060 | 3_4:+9237856 | None:intergenic |
| CCAATGAGAAAGGCTTTCAA+TGG | 0.561406 | 3_4:-9236672 | Msa0489070:CDS |
| AAGCCTTTCTCATTGGCACA+AGG | 0.563142 | 3_4:+9236679 | None:intergenic |
| TAGAGGACAACATGTGGTTG+AGG | 0.573654 | 3_4:+9237935 | None:intergenic |
| GGTGTATCCGACACAGCTCA+AGG | 0.574972 | 3_4:-9237863 | Msa0489070:CDS |
| TAGTCCGTATAACCTACAAC+CGG | 0.576852 | 3_4:+9236471 | None:intergenic |
| CAATATTCTTTACTGTCACA+TGG | 0.576936 | 3_4:-9236751 | Msa0489070:CDS |
| AGCTTCAATAGCATTTCTTG+CGG | 0.576970 | 3_4:+9237197 | None:intergenic |
| GCTCTTTAGTCCATATACCT+GGG | 0.578858 | 3_4:+9237828 | None:intergenic |
| CAAGGGTATCCAGACAGCCC+AGG | 0.584387 | 3_4:-9237845 | Msa0489070:CDS |
| GGCACTTTCATGGTTGCGGG+AGG | 0.587792 | 3_4:-9236651 | Msa0489070:CDS |
| AATGACAGAACAGATGAATA+CGG | 0.588235 | 3_4:-9236948 | Msa0489070:CDS |
| GAAATCGACAACGATTCTCA+AGG | 0.593087 | 3_4:+9236919 | None:intergenic |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 3_4:+9236997 | None:intergenic |
| GGAGGCTATGACAGACAAGA+CGG | 0.604358 | 3_4:-9236633 | Msa0489070:CDS |
| TAGGATCTTATTCTAGTGAG+TGG | 0.614903 | 3_4:+9237968 | None:intergenic |
| GAGGCTATGACAGACAAGAC+GGG | 0.616560 | 3_4:-9236632 | Msa0489070:CDS |
| CAATGCTATAGCTGAAAACA+GGG | 0.617928 | 3_4:-9236607 | Msa0489070:CDS |
| ATCTTGTAAGGTGTAAGAAG+AGG | 0.620167 | 3_4:+9238109 | None:intergenic |
| ATATGCAATTCAATTTGAGA+GGG | 0.622130 | 3_4:+9238221 | None:intergenic |
| TGGTTGAGGAACATTGCCAT+AGG | 0.622865 | 3_4:+9237949 | None:intergenic |
| ACTGCTTCAACAATTTCCAA+AGG | 0.625347 | 3_4:+9236897 | None:intergenic |
| AAATCGACAACGATTCTCAA+GGG | 0.633730 | 3_4:+9236920 | None:intergenic |
| TTTGCTGAATATGCAGAAAG+CGG | 0.633878 | 3_4:-9236828 | Msa0489070:CDS |
| TCTCAAAGGTCCTCTAAAGG+TGG | 0.638482 | 3_4:-9237908 | Msa0489070:CDS |
| CTAAAGAGCAAGTTGAGGCG+TGG | 0.641191 | 3_4:-9237814 | Msa0489070:CDS |
| GACTTCATATGACTTAAGGA+TGG | 0.656688 | 3_4:+9235762 | None:intergenic |
| GTGTATCCGACACAGCTCAA+GGG | 0.660265 | 3_4:-9237862 | Msa0489070:CDS |
| TGTACTGTAGCATCCAAGGT+TGG | 0.667688 | 3_4:-9236421 | Msa0489070:three_prime_UTR |
| TATTCTTTACTGTCACATGG+TGG | 0.684787 | 3_4:-9236748 | Msa0489070:CDS |
| ATGGACTAAAGAGCAAGTTG+AGG | 0.687634 | 3_4:-9237819 | Msa0489070:CDS |
| GAGTAATAGAGGACAACATG+TGG | 0.696474 | 3_4:+9237929 | None:intergenic |
| GACAGAACAGATGAATACGG+TGG | 0.702185 | 3_4:-9236945 | Msa0489070:CDS |
| TCTGTCCCAAGCCTTCTCGG+TGG | 0.708391 | 3_4:+9237255 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACTAATTAAATTTGA+AGG | + | chr3_4:9237542-9237561 | None:intergenic | 10.0% |
| !!! | TCACATTAATTTGATTTAAT+TGG | - | chr3_4:9235757-9235776 | Msa0489070:three_prime_UTR | 15.0% |
| !!! | ATTGAAATTGAAAGTATAAT+AGG | + | chr3_4:9235873-9235892 | None:intergenic | 15.0% |
| !! | AATAATCTTCAAATTATATG+AGG | + | chr3_4:9236241-9236260 | None:intergenic | 15.0% |
| !!! | AATTTGAAGATTATTTTAGT+TGG | - | chr3_4:9236246-9236265 | Msa0489070:intron | 15.0% |
| !! | GTAGTAATACTAAAAAATAA+CGG | + | chr3_4:9236478-9236497 | None:intergenic | 15.0% |
| !!! | CATTAATTTGATTTAATTGG+TGG | - | chr3_4:9235760-9235779 | Msa0489070:three_prime_UTR | 20.0% |
| !!! | TACTAAAAAATAACGGATTT+GGG | + | chr3_4:9236471-9236490 | None:intergenic | 20.0% |
| !!! | ATACTAAAAAATAACGGATT+TGG | + | chr3_4:9236472-9236491 | None:intergenic | 20.0% |
| !!! | TTTTAGTATTACTACTACTA+AGG | - | chr3_4:9236483-9236502 | Msa0489070:CDS | 20.0% |
| !! | TTTAGTATTACTACTACTAA+GGG | - | chr3_4:9236484-9236503 | Msa0489070:CDS | 20.0% |
| !! | AAGAATATTGTACTTATTGA+GGG | + | chr3_4:9237168-9237187 | None:intergenic | 20.0% |
| !! | AAAGAATATTGTACTTATTG+AGG | + | chr3_4:9237169-9237188 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTCATTCAAGAAA+TGG | + | chr3_4:9237485-9237504 | None:intergenic | 20.0% |
| !! | CTTATATGGTATAAAATATC+AGG | + | chr3_4:9237694-9237713 | None:intergenic | 20.0% |
| !! | AAAGCTAGAAAAATAAATGA+TGG | + | chr3_4:9237791-9237810 | None:intergenic | 20.0% |
| !! | TATTCATGTATGTTAACTAA+AGG | - | chr3_4:9237842-9237861 | Msa0489070:CDS | 20.0% |
| ! | ATATGCAATTCAATTTGAGA+GGG | + | chr3_4:9235711-9235730 | None:intergenic | 25.0% |
| ! | AATATGCAATTCAATTTGAG+AGG | + | chr3_4:9235712-9235731 | None:intergenic | 25.0% |
| !! | TTTAATTGGTGGTATCAAAA+TGG | - | chr3_4:9235771-9235790 | Msa0489070:intron | 25.0% |
| !!! | TTGAAGATTATTTTAGTTGG+AGG | - | chr3_4:9236249-9236268 | Msa0489070:intron | 25.0% |
| !! | TTGTTATTGTTGGATTTAGA+TGG | - | chr3_4:9236272-9236291 | Msa0489070:three_prime_UTR | 25.0% |
| ! | CAAAACTATCCAATCAATAT+TGG | + | chr3_4:9236404-9236423 | None:intergenic | 25.0% |
| ! | TTAGTATTACTACTACTAAG+GGG | - | chr3_4:9236485-9236504 | Msa0489070:CDS | 25.0% |
| ! | AAAACCTGTTGAGAATAAAA+TGG | + | chr3_4:9236582-9236601 | None:intergenic | 25.0% |
| !!! | TACTGATATTTTTCAGAAAC+AGG | - | chr3_4:9236816-9236835 | Msa0489070:CDS | 25.0% |
| ! | TAGTCTAATTCCAACTTTAT+CGG | + | chr3_4:9237075-9237094 | None:intergenic | 25.0% |
| ! | TCCTCTTAACAAGTATAATA+GGG | - | chr3_4:9237415-9237434 | Msa0489070:intron | 25.0% |
| !!! | TTTTATTCATACTAGCTTCT+CGG | - | chr3_4:9237631-9237650 | Msa0489070:intron | 25.0% |
| ! | TTTATACCATATAAGCTTTG+TGG | - | chr3_4:9237699-9237718 | Msa0489070:intron | 25.0% |
| ! | TATGTACATTATCATGTTGA+TGG | + | chr3_4:9237824-9237843 | None:intergenic | 25.0% |
| ! | AAGTTCCAAAGAAAACTAAA+TGG | - | chr3_4:9237953-9237972 | Msa0489070:CDS | 25.0% |
| ! | ACTACTACCTTGATTTAAAT+AGG | - | chr3_4:9238114-9238133 | Msa0489070:CDS | 25.0% |
| ! | TGGTGAAACTATAGAAAATT+TGG | + | chr3_4:9238150-9238169 | None:intergenic | 25.0% |
| ! | CTACATTCTTTTGTCAGATT+TGG | - | chr3_4:9236172-9236191 | Msa0489070:intron | 30.0% |
| ! | GTTGGAAGATTTTCAAATTC+AGG | - | chr3_4:9236198-9236217 | Msa0489070:intron | 30.0% |
| AAATTCTTGAGCTTGAAATC+CGG | - | chr3_4:9236373-9236392 | Msa0489070:three_prime_UTR | 30.0% | |
| ACTATCCAATCAATATTGGA+CGG | + | chr3_4:9236400-9236419 | None:intergenic | 30.0% | |
| TATTGAAGCTGGTAAATTTG+TGG | - | chr3_4:9236745-9236764 | Msa0489070:CDS | 30.0% | |
| ! | GATTGAAGCACATTTCATTT+TGG | + | chr3_4:9236787-9236806 | None:intergenic | 30.0% |
| !! | AGGACTATTTGTTGCTTTAA+AGG | - | chr3_4:9236836-9236855 | Msa0489070:CDS | 30.0% |
| !! | GGACTATTTGTTGCTTTAAA+GGG | - | chr3_4:9236837-9236856 | Msa0489070:CDS | 30.0% |
| CTCAATTTGATGCAAATTAC+AGG | - | chr3_4:9236891-9236910 | Msa0489070:CDS | 30.0% | |
| !! | ATGCAAATTACAGGTTTTGA+TGG | - | chr3_4:9236900-9236919 | Msa0489070:CDS | 30.0% |
| CTTTCATGAATTGTTCAAGT+AGG | + | chr3_4:9236953-9236972 | None:intergenic | 30.0% | |
| AATGACAGAACAGATGAATA+CGG | - | chr3_4:9236981-9237000 | Msa0489070:CDS | 30.0% | |
| ATATAAAGTCCCAATGCATT+TGG | + | chr3_4:9237137-9237156 | None:intergenic | 30.0% | |
| AAATGCATTGGGACTTTATA+TGG | - | chr3_4:9237136-9237155 | Msa0489070:intron | 30.0% | |
| CAATATTCTTTACTGTCACA+TGG | - | chr3_4:9237178-9237197 | Msa0489070:intron | 30.0% | |
| !! | TCAGAAGCTGATTTTATTCT+TGG | + | chr3_4:9237209-9237228 | None:intergenic | 30.0% |
| CTCCTCTTAACAAGTATAAT+AGG | - | chr3_4:9237414-9237433 | Msa0489070:intron | 30.0% | |
| ! | TCCCTATTATACTTGTTAAG+AGG | + | chr3_4:9237419-9237438 | None:intergenic | 30.0% |
| AACATTCTACATTTCTGATC+CGG | - | chr3_4:9237439-9237458 | Msa0489070:intron | 30.0% | |
| ACTACAAAAACAAATGTGCA+AGG | + | chr3_4:9237567-9237586 | None:intergenic | 30.0% | |
| TATCAACCACAAAGCTTATA+TGG | + | chr3_4:9237708-9237727 | None:intergenic | 30.0% | |
| ! | ATATAAGCTTTGTGGTTGAT+AGG | - | chr3_4:9237707-9237726 | Msa0489070:intron | 30.0% |
| TTCTTCTTCTCTTTAATTCC+GGG | + | chr3_4:9237735-9237754 | None:intergenic | 30.0% | |
| CTTCTTCTTCTCTTTAATTC+CGG | + | chr3_4:9237736-9237755 | None:intergenic | 30.0% | |
| ! | AGAAGAAGTGTATTCGAAAA+TGG | - | chr3_4:9237748-9237767 | Msa0489070:CDS | 30.0% |
| ATTGTTAGGATAAACTGCTA+AGG | + | chr3_4:9237881-9237900 | None:intergenic | 30.0% | |
| TCTTGGTGAATTGACAAAAA+AGG | - | chr3_4:9237900-9237919 | Msa0489070:CDS | 30.0% | |
| !!! | AGCTTCCATTTAGTTTTCTT+TGG | + | chr3_4:9237961-9237980 | None:intergenic | 30.0% |
| ATTACACATTCTGCTTCAAA+CGG | + | chr3_4:9238044-9238063 | None:intergenic | 30.0% | |
| TTCAGCTCCTATTTAAATCA+AGG | + | chr3_4:9238124-9238143 | None:intergenic | 30.0% | |
| ATGAGACTTCATATGACTTA+AGG | + | chr3_4:9238174-9238193 | None:intergenic | 30.0% | |
| CATGAATGAGTAAATACTCA+TGG | - | chr3_4:9238191-9238210 | Msa0489070:five_prime_UTR | 30.0% | |
| AATTTGAGAGGGAGTTGTTA+GGG | + | chr3_4:9235700-9235719 | None:intergenic | 35.0% | |
| TAAGGTGTAAGAAGAGGAAT+GGG | + | chr3_4:9235817-9235836 | None:intergenic | 35.0% | |
| ATCTTGTAAGGTGTAAGAAG+AGG | + | chr3_4:9235823-9235842 | None:intergenic | 35.0% | |
| TCTTCTTACACCTTACAAGA+TGG | - | chr3_4:9235822-9235841 | Msa0489070:intron | 35.0% | |
| CTTCTTACACCTTACAAGAT+GGG | - | chr3_4:9235823-9235842 | Msa0489070:intron | 35.0% | |
| TTGAATTTGCCCATCTTGTA+AGG | + | chr3_4:9235835-9235854 | None:intergenic | 35.0% | |
| GCAAATTCAATCTCTCTCAT+AGG | - | chr3_4:9235845-9235864 | Msa0489070:intron | 35.0% | |
| GGAGGTTAATTAGCAAAACA+AGG | + | chr3_4:9235919-9235938 | None:intergenic | 35.0% | |
| ! | AAAACAACTCTGAAAATGGG+AGG | + | chr3_4:9235937-9235956 | None:intergenic | 35.0% |
| ! | TCCCATTTTCAGAGTTGTTT+TGG | - | chr3_4:9235936-9235955 | Msa0489070:intron | 35.0% |
| ! | GCCAAAACAACTCTGAAAAT+GGG | + | chr3_4:9235940-9235959 | None:intergenic | 35.0% |
| ! | TGCCAAAACAACTCTGAAAA+TGG | + | chr3_4:9235941-9235960 | None:intergenic | 35.0% |
| TAGGATCTTATTCTAGTGAG+TGG | + | chr3_4:9235964-9235983 | None:intergenic | 35.0% | |
| CTCACTAGAATAAGATCCTA+TGG | - | chr3_4:9235964-9235983 | Msa0489070:intron | 35.0% | |
| TTGTCCTCTATTACTCTCAA+AGG | - | chr3_4:9236007-9236026 | Msa0489070:intron | 35.0% | |
| TATAAGAAGACCACCTTTAG+AGG | + | chr3_4:9236034-9236053 | None:intergenic | 35.0% | |
| ! | TTTTGTCAGATTTGGCATGT+TGG | - | chr3_4:9236180-9236199 | Msa0489070:intron | 35.0% |
| ! | TAGTTGGAGGTTGTTATTGT+TGG | - | chr3_4:9236262-9236281 | Msa0489070:three_prime_UTR | 35.0% |
| ATTGTTGGATTTAGATGGTG+TGG | - | chr3_4:9236277-9236296 | Msa0489070:three_prime_UTR | 35.0% | |
| ! | GTGTCCATTTTATTCTCAAC+AGG | - | chr3_4:9236575-9236594 | Msa0489070:CDS | 35.0% |
| CTGAAGTCATTGACAATATC+AGG | + | chr3_4:9236707-9236726 | None:intergenic | 35.0% | |
| AGCTTCAATAGCATTTCTTG+CGG | + | chr3_4:9236735-9236754 | None:intergenic | 35.0% | |
| AAATCGACAACGATTCTCAA+GGG | + | chr3_4:9237012-9237031 | None:intergenic | 35.0% | |
| ACTGCTTCAACAATTTCCAA+AGG | + | chr3_4:9237035-9237054 | None:intergenic | 35.0% | |
| GAAGCAGTTGTAAATGAGAT+AGG | - | chr3_4:9237047-9237066 | Msa0489070:intron | 35.0% | |
| CTTTCTGCATATTCAGCAAA+TGG | + | chr3_4:9237101-9237120 | None:intergenic | 35.0% | |
| TTTGCTGAATATGCAGAAAG+CGG | - | chr3_4:9237101-9237120 | Msa0489070:intron | 35.0% | |
| AGACTCTAATCCAAATGCAT+TGG | - | chr3_4:9237124-9237143 | Msa0489070:intron | 35.0% | |
| GACTCTAATCCAAATGCATT+GGG | - | chr3_4:9237125-9237144 | Msa0489070:intron | 35.0% | |
| TATTCTTTACTGTCACATGG+TGG | - | chr3_4:9237181-9237200 | Msa0489070:intron | 35.0% | |
| TCAATGCTATAGCTGAAAAC+AGG | - | chr3_4:9237321-9237340 | Msa0489070:CDS | 35.0% | |
| CAATGCTATAGCTGAAAACA+GGG | - | chr3_4:9237322-9237341 | Msa0489070:CDS | 35.0% | |
| GCATTAAGTGCAAATCTCTT+TGG | + | chr3_4:9237395-9237414 | None:intergenic | 35.0% | |
| GCAGTTTATCCTAACAATCT+TGG | - | chr3_4:9237883-9237902 | Msa0489070:CDS | 35.0% | |
| GTCAATTCACCAAGATTGTT+AGG | + | chr3_4:9237895-9237914 | None:intergenic | 35.0% | |
| GACTTCATATGACTTAAGGA+TGG | + | chr3_4:9238170-9238189 | None:intergenic | 35.0% | |
| CAATTTGAGAGGGAGTTGTT+AGG | + | chr3_4:9235701-9235720 | None:intergenic | 40.0% | |
| GTAAGGTGTAAGAAGAGGAA+TGG | + | chr3_4:9235818-9235837 | None:intergenic | 40.0% | |
| GAGTAATAGAGGACAACATG+TGG | + | chr3_4:9236003-9236022 | None:intergenic | 40.0% | |
| ! | AGGACCTTTGAGAGTAATAG+AGG | + | chr3_4:9236014-9236033 | None:intergenic | 40.0% |
| TACTCTCAAAGGTCCTCTAA+AGG | - | chr3_4:9236018-9236037 | Msa0489070:intron | 40.0% | |
| GCTCTTTAGTCCATATACCT+GGG | + | chr3_4:9236104-9236123 | None:intergenic | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | + | chr3_4:9236105-9236124 | None:intergenic | 40.0% | |
| ! | ATGGACTAAAGAGCAAGTTG+AGG | - | chr3_4:9236110-9236129 | Msa0489070:intron | 40.0% |
| GTAGATGCTGTTCATGCTAA+AGG | - | chr3_4:9236147-9236166 | Msa0489070:intron | 40.0% | |
| GATATCGGTACTTGTCCATT+CGG | + | chr3_4:9236608-9236627 | None:intergenic | 40.0% | |
| GACTTGTCGGTAGAAGATAT+CGG | + | chr3_4:9236623-9236642 | None:intergenic | 40.0% | |
| ! | ATTGCTTGTGAGTGACTTGT+CGG | + | chr3_4:9236636-9236655 | None:intergenic | 40.0% |
| GCAAGAAATGCTATTGAAGC+TGG | - | chr3_4:9236734-9236753 | Msa0489070:CDS | 40.0% | |
| !! | TTTGATGGTGTCGAAATCCA+TGG | - | chr3_4:9236915-9236934 | Msa0489070:CDS | 40.0% |
| GAAATCGACAACGATTCTCA+AGG | + | chr3_4:9237013-9237032 | None:intergenic | 40.0% | |
| !! | GAATCGTTGTCGATTTCCTT+TGG | - | chr3_4:9237016-9237035 | Msa0489070:CDS | 40.0% |
| CCATTGAAAGCCTTTCTCAT+TGG | + | chr3_4:9237260-9237279 | None:intergenic | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+TGG | - | chr3_4:9237257-9237276 | Msa0489070:CDS | 40.0% | |
| AGGGCAGATCTTGTAGTTTA+TGG | - | chr3_4:9237341-9237360 | Msa0489070:intron | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | + | chr3_4:9237386-9237405 | None:intergenic | 40.0% | |
| TACATTTCTGATCCGGTTGT+AGG | - | chr3_4:9237446-9237465 | Msa0489070:intron | 40.0% | |
| TGATCCGGTTGTAGGTTATA+CGG | - | chr3_4:9237454-9237473 | Msa0489070:intron | 40.0% | |
| TAGTCCGTATAACCTACAAC+CGG | + | chr3_4:9237461-9237480 | None:intergenic | 40.0% | |
| TTTGCAAACAAGCAATTGCC+AGG | + | chr3_4:9238019-9238038 | None:intergenic | 40.0% | |
| TGGTTGAGGAACATTGCCAT+AGG | + | chr3_4:9235983-9236002 | None:intergenic | 45.0% | |
| TAGAGGACAACATGTGGTTG+AGG | + | chr3_4:9235997-9236016 | None:intergenic | 45.0% | |
| ! | TCTCAAAGGTCCTCTAAAGG+TGG | - | chr3_4:9236021-9236040 | Msa0489070:intron | 45.0% |
| CTTCTTATAGCCGAAGCTAC+TGG | - | chr3_4:9236045-9236064 | Msa0489070:intron | 45.0% | |
| GCATGAACAGCATCTACAAC+AGG | + | chr3_4:9236144-9236163 | None:intergenic | 45.0% | |
| GCAGTCAACCACATCAAGAT+CGG | - | chr3_4:9236311-9236330 | Msa0489070:three_prime_UTR | 45.0% | |
| CTAGACAACCGATCTTGATG+TGG | + | chr3_4:9236322-9236341 | None:intergenic | 45.0% | |
| CCAATCAATATTGGACGGTC+CGG | + | chr3_4:9236395-9236414 | None:intergenic | 45.0% | |
| ! | TCAACAGGTTTTCAGCCGAA+TGG | - | chr3_4:9236590-9236609 | Msa0489070:CDS | 45.0% |
| AAAAATTCTCGCCACCGAGA+AGG | - | chr3_4:9236663-9236682 | Msa0489070:CDS | 45.0% | |
| GACAGAACAGATGAATACGG+TGG | - | chr3_4:9236984-9237003 | Msa0489070:CDS | 45.0% | |
| GAGATAGGAGCCGATAAAGT+TGG | - | chr3_4:9237062-9237081 | Msa0489070:intron | 45.0% | |
| TCATTGGCACAAGGCTGTAA+GGG | + | chr3_4:9237244-9237263 | None:intergenic | 45.0% | |
| AAGCCTTTCTCATTGGCACA+AGG | + | chr3_4:9237253-9237272 | None:intergenic | 45.0% | |
| GGCTTTCAATGGCACTTTCA+TGG | - | chr3_4:9237268-9237287 | Msa0489070:CDS | 45.0% | |
| CAATGGCACTTTCATGGTTG+CGG | - | chr3_4:9237274-9237293 | Msa0489070:CDS | 45.0% | |
| AATGGCACTTTCATGGTTGC+GGG | - | chr3_4:9237275-9237294 | Msa0489070:CDS | 45.0% | |
| ATGCTGTACTGTAGCATCCA+AGG | - | chr3_4:9237504-9237523 | Msa0489070:intron | 45.0% | |
| TGTACTGTAGCATCCAAGGT+TGG | - | chr3_4:9237508-9237527 | Msa0489070:intron | 45.0% | |
| ! | TTCATACTAGCTTCTCGGCT+AGG | - | chr3_4:9237636-9237655 | Msa0489070:intron | 45.0% |
| !! | CTTTGTGGTTGATAGGATCC+CGG | - | chr3_4:9237714-9237733 | Msa0489070:intron | 45.0% |
| !!! | TTTTTTATTTATATTCAAAT+TGG | + | chr3_4:9238227-9238246 | None:intergenic | 5.0% |
| GTCGGATACACCAGTAGCTT+CGG | + | chr3_4:9236058-9236077 | None:intergenic | 50.0% | |
| GTGTATCCGACACAGCTCAA+GGG | - | chr3_4:9236067-9236086 | Msa0489070:intron | 50.0% | |
| TGGATACCCTTGAGCTGTGT+CGG | + | chr3_4:9236076-9236095 | None:intergenic | 50.0% | |
| ATCCAGACAGCCCAGGTATA+TGG | - | chr3_4:9236091-9236110 | Msa0489070:intron | 50.0% | |
| ! | CTAAAGAGCAAGTTGAGGCG+TGG | - | chr3_4:9236115-9236134 | Msa0489070:intron | 50.0% |
| CCGGACCGTCCAATATTGAT+TGG | - | chr3_4:9236392-9236411 | Msa0489070:three_prime_UTR | 50.0% | |
| TCATCTGTCCCAAGCCTTCT+CGG | + | chr3_4:9236680-9236699 | None:intergenic | 50.0% | |
| GTCGAAATCCATGGAGCTCA+TGG | - | chr3_4:9236924-9236943 | Msa0489070:CDS | 50.0% | |
| CTCATTGGCACAAGGCTGTA+AGG | + | chr3_4:9237245-9237264 | None:intergenic | 50.0% | |
| ! | CAGCCTTGTGCCAATGAGAA+AGG | - | chr3_4:9237247-9237266 | Msa0489070:CDS | 50.0% |
| GGAGGCTATGACAGACAAGA+CGG | - | chr3_4:9237296-9237315 | Msa0489070:CDS | 50.0% | |
| GAGGCTATGACAGACAAGAC+GGG | - | chr3_4:9237297-9237316 | Msa0489070:CDS | 50.0% | |
| GTAGCATCCAAGGTTGGAAG+TGG | - | chr3_4:9237514-9237533 | Msa0489070:intron | 50.0% | |
| GAAGGTTCCACTTCCAACCT+TGG | + | chr3_4:9237524-9237543 | None:intergenic | 50.0% | |
| AATGCCACACTACTAGCACC+TGG | - | chr3_4:9237998-9238017 | Msa0489070:intron | 50.0% | |
| ATTGCCAGGTGCTAGTAGTG+TGG | + | chr3_4:9238005-9238024 | None:intergenic | 50.0% | |
| GGTGTATCCGACACAGCTCA+AGG | - | chr3_4:9236066-9236085 | Msa0489070:intron | 55.0% | |
| GTCCATATACCTGGGCTGTC+TGG | + | chr3_4:9236096-9236115 | None:intergenic | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | + | chr3_4:9236935-9236954 | None:intergenic | 55.0% | |
| !! | CAAGGGTATCCAGACAGCCC+AGG | - | chr3_4:9236084-9236103 | Msa0489070:intron | 60.0% |
| TTCTCGCCACCGAGAAGGCT+TGG | - | chr3_4:9236668-9236687 | Msa0489070:CDS | 60.0% | |
| TCTCGCCACCGAGAAGGCTT+GGG | - | chr3_4:9236669-9236688 | Msa0489070:CDS | 60.0% | |
| TCTGTCCCAAGCCTTCTCGG+TGG | + | chr3_4:9236677-9236696 | None:intergenic | 60.0% | |
| GGCACTTTCATGGTTGCGGG+AGG | - | chr3_4:9237278-9237297 | Msa0489070:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 9235677 | 9238274 | 9235677 | ID=Msa0489070;Name=Msa0489070 |
| chr3_4 | mRNA | 9235677 | 9238274 | 9235677 | ID=Msa0489070-mRNA-1;Parent=Msa0489070;Name=Msa0489070-mRNA-1;_AED=0.12;_eAED=0.12;_QI=113|1|1|1|0.75|0.6|5|304|363 |
| chr3_4 | exon | 9235677 | 9235782 | 9235677 | ID=Msa0489070-mRNA-1:exon:3050;Parent=Msa0489070-mRNA-1 |
| chr3_4 | exon | 9236257 | 9237038 | 9236257 | ID=Msa0489070-mRNA-1:exon:3049;Parent=Msa0489070-mRNA-1 |
| chr3_4 | exon | 9237196 | 9237354 | 9237196 | ID=Msa0489070-mRNA-1:exon:3048;Parent=Msa0489070-mRNA-1 |
| chr3_4 | exon | 9237732 | 9238003 | 9237732 | ID=Msa0489070-mRNA-1:exon:3047;Parent=Msa0489070-mRNA-1 |
| chr3_4 | exon | 9238085 | 9238274 | 9238085 | ID=Msa0489070-mRNA-1:exon:3046;Parent=Msa0489070-mRNA-1 |
| chr3_4 | five_prime_UTR | 9238162 | 9238274 | 9238162 | ID=Msa0489070-mRNA-1:five_prime_utr;Parent=Msa0489070-mRNA-1 |
| chr3_4 | CDS | 9238085 | 9238161 | 9238085 | ID=Msa0489070-mRNA-1:cds;Parent=Msa0489070-mRNA-1 |
| chr3_4 | CDS | 9237732 | 9238003 | 9237732 | ID=Msa0489070-mRNA-1:cds;Parent=Msa0489070-mRNA-1 |
| chr3_4 | CDS | 9237196 | 9237354 | 9237196 | ID=Msa0489070-mRNA-1:cds;Parent=Msa0489070-mRNA-1 |
| chr3_4 | CDS | 9236455 | 9237038 | 9236455 | ID=Msa0489070-mRNA-1:cds;Parent=Msa0489070-mRNA-1 |
| chr3_4 | three_prime_UTR | 9236257 | 9236454 | 9236257 | ID=Msa0489070-mRNA-1:three_prime_utr;Parent=Msa0489070-mRNA-1 |
| chr3_4 | three_prime_UTR | 9235677 | 9235782 | 9235677 | ID=Msa0489070-mRNA-1:three_prime_utr;Parent=Msa0489070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
