AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146930 MtrunA17_Chr1g0156321 96.060 863 31 2 1 863 1 860 0.0 1733
Msa0146930 MtrunA17_Chr1g0156301 87.279 283 20 1 581 863 1 267 2.33e-174 504
Msa0146930 MtrunA17_Chr5g0433301 68.120 367 113 3 35 398 16 381 1.18e-167 508
Msa0146930 MtrunA17_Chr5g0433301 41.060 151 71 3 730 862 670 820 7.58e-26 114
Msa0146930 MtrunA17_Chr2g0285461 67.575 367 115 3 35 398 15 380 1.44e-167 510
Msa0146930 MtrunA17_Chr4g0070181 72.886 343 90 3 35 376 15 355 2.94e-167 515
Msa0146930 MtrunA17_Chr4g0070181 39.631 217 120 4 634 849 880 1086 3.99e-34 141
Msa0146930 MtrunA17_Chr3g0109391 68.219 365 112 3 37 398 20 383 6.48e-167 506
Msa0146930 MtrunA17_Chr3g0109391 43.421 152 83 2 712 862 679 828 7.59e-28 120
Msa0146930 MtrunA17_Chr2g0301251 70.554 343 98 3 35 376 15 355 7.01e-162 501
Msa0146930 MtrunA17_Chr2g0301251 60.952 105 41 0 745 849 974 1078 7.96e-33 137
Msa0146930 MtrunA17_Chr8g0376771 66.485 367 118 4 35 398 15 379 2.67e-160 491
Msa0146930 MtrunA17_Chr8g0376771 50.806 124 61 0 739 862 763 886 8.41e-31 130
Msa0146930 MtrunA17_Chr8g0389081 68.047 338 107 1 40 376 29 366 6.62e-150 469
Msa0146930 MtrunA17_Chr8g0389081 39.806 206 100 6 649 849 891 1077 2.66e-34 142
Msa0146930 MtrunA17_Chr2g0276781 53.846 338 154 2 39 376 19 354 1.44e-118 375
Msa0146930 MtrunA17_Chr2g0276781 48.387 93 44 3 756 846 546 636 7.60e-18 88.6
Msa0146930 MtrunA17_Chr8g0385791 53.687 339 154 3 39 376 55 391 5.24e-118 378
Msa0146930 MtrunA17_Chr8g0385791 42.857 91 50 2 757 846 710 799 4.01e-15 80.1
Msa0146930 MtrunA17_Chr8g0346711 51.009 347 165 4 31 376 16 358 1.75e-111 356
Msa0146930 MtrunA17_Chr8g0346711 41.748 103 54 3 747 845 545 645 9.75e-16 81.6
Msa0146930 MtrunA17_Chr2g0326281 50.275 364 153 7 43 381 56 416 2.66e-107 349
Msa0146930 MtrunA17_Chr2g0326281 42.308 104 58 2 757 859 695 797 4.41e-18 89.4
Msa0146930 MtrunA17_Chr2g0282961 50.867 346 147 6 43 376 53 387 1.32e-105 338
Msa0146930 MtrunA17_Chr4g0029671 49.857 349 154 6 43 376 54 396 4.27e-105 342
Msa0146930 MtrunA17_Chr4g0029671 45.055 91 48 2 757 846 663 752 1.95e-18 90.5
Msa0146930 MtrunA17_Chr4g0046371 47.721 373 157 8 43 393 38 394 7.00e-104 337
Msa0146930 MtrunA17_Chr4g0009751 50.877 342 153 7 41 376 17 349 8.00e-104 334
Msa0146930 MtrunA17_Chr7g0239061 47.384 344 174 5 35 376 6 344 3.49e-100 326
Msa0146930 MtrunA17_Chr7g0239061 42.857 91 49 2 757 846 570 658 1.20e-14 78.2
Msa0146930 MtrunA17_Chr1g0181211 38.303 389 183 7 36 376 20 399 1.21e-79 271
Msa0146930 MtrunA17_Chr2g0326761 41.005 378 176 8 38 376 6 375 2.45e-79 271
Msa0146930 MtrunA17_Chr4g0028971 40.365 384 172 8 40 376 9 382 6.12e-77 264
Msa0146930 MtrunA17_Chr1g0199681 38.693 398 194 10 38 394 89 477 2.04e-76 263
Msa0146930 MtrunA17_Chr7g0264171 35.437 412 191 10 36 385 24 422 2.50e-71 246
Msa0146930 MtrunA17_Chr7g0264161 38.339 313 173 6 52 356 1 301 2.55e-66 223
Msa0146930 MtrunA17_Chr3g0115271 36.693 387 201 7 39 387 15 395 5.40e-66 231
Msa0146930 MtrunA17_Chr5g0424931 34.417 369 197 10 38 376 14 367 2.16e-56 203
Msa0146930 MtrunA17_Chr5g0417281 32.265 437 245 15 37 457 5 406 1.01e-55 201
Msa0146930 MtrunA17_Chr8g0356211 42.667 225 121 4 154 376 2 220 1.15e-53 189
Msa0146930 MtrunA17_Chr5g0436761 34.037 379 212 13 38 394 7 369 4.05e-53 192
Msa0146930 MtrunA17_Chr1g0178011 31.880 367 222 10 38 394 7 355 6.19e-49 180
Msa0146930 MtrunA17_Chr2g0289221 35.347 331 168 14 43 356 20 321 2.72e-44 164
Msa0146930 MtrunA17_Chr2g0277461 33.628 339 205 10 43 376 13 336 1.23e-43 164
Msa0146930 MtrunA17_Chr5g0417211 32.317 328 187 11 40 355 9 313 5.46e-40 153
Msa0146930 MtrunA17_Chr5g0424741 31.658 398 212 16 38 396 7 383 9.28e-39 152
Msa0146930 MtrunA17_Chr2g0277531 30.061 326 195 12 40 356 17 318 3.30e-37 142
Msa0146930 MtrunA17_Chr1g0156311 61.475 122 14 3 264 385 1 89 7.45e-33 122
Msa0146930 MtrunA17_Chr5g0424801 28.818 347 217 10 40 376 9 335 1.07e-32 130
Msa0146930 MtrunA17_Chr5g0425661 34.300 207 127 4 39 242 33 233 3.73e-32 125
Msa0146930 MtrunA17_Chr5g0425261 28.818 347 217 10 40 376 9 335 7.91e-32 128
Msa0146930 MtrunA17_Chr5g0424791 28.082 146 97 2 97 242 14 151 1.43e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146930 AT1G19850.1 59.393 889 292 20 19 861 32 897 0.0 972
Msa0146930 AT1G19850.2 59.393 889 292 20 19 861 21 886 0.0 972
Msa0146930 AT1G30330.1 67.655 371 116 3 31 398 11 380 1.78e-167 511
Msa0146930 AT1G30330.1 51.667 120 58 0 737 856 774 893 4.68e-31 131
Msa0146930 AT1G30330.3 67.385 371 117 3 31 398 13 382 2.19e-166 508
Msa0146930 AT1G30330.3 51.667 120 58 0 737 856 776 895 4.70e-31 131
Msa0146930 AT1G30330.2 67.385 371 117 3 31 398 13 382 2.19e-166 508
Msa0146930 AT1G30330.2 51.667 120 58 0 737 856 776 895 4.70e-31 131
Msa0146930 AT1G19220.1 68.365 373 110 5 35 403 15 383 1.06e-165 511
Msa0146930 AT1G19220.1 44.578 166 84 4 687 849 890 1050 4.24e-32 135
Msa0146930 AT5G37020.2 66.846 371 118 4 31 398 11 379 5.66e-165 499
Msa0146930 AT5G37020.2 53.623 69 32 0 757 825 705 773 7.93e-18 89.0
Msa0146930 AT5G37020.1 66.846 371 118 4 31 398 11 379 2.17e-164 499
Msa0146930 AT5G37020.1 51.613 93 45 0 757 849 705 797 2.02e-24 110
Msa0146930 AT5G20730.2 70.262 343 99 3 35 376 16 356 2.12e-158 494
Msa0146930 AT5G20730.2 59.406 101 41 0 749 849 1029 1129 1.75e-31 133
Msa0146930 AT5G20730.3 70.058 344 99 4 35 376 16 357 9.12e-157 489
Msa0146930 AT5G20730.3 59.406 101 41 0 749 849 1030 1130 1.82e-31 133
Msa0146930 AT5G20730.1 70.058 344 99 4 35 376 16 357 1.71e-156 489
Msa0146930 AT5G20730.1 59.406 101 41 0 749 849 1030 1130 1.89e-31 133
Msa0146930 AT5G62000.2 56.140 342 141 4 39 376 57 393 1.05e-122 391
Msa0146930 AT5G62000.2 37.931 145 79 4 706 845 683 821 2.37e-18 90.9
Msa0146930 AT5G62000.5 56.140 342 141 4 39 376 57 393 1.05e-122 391
Msa0146930 AT5G62000.5 37.931 145 79 4 706 845 683 821 2.37e-18 90.9
Msa0146930 AT5G62000.3 56.140 342 141 4 39 376 57 393 1.05e-122 391
Msa0146930 AT5G62000.3 37.931 145 79 4 706 845 683 821 2.37e-18 90.9
Msa0146930 AT5G62000.1 56.140 342 141 4 39 376 57 393 1.05e-122 391
Msa0146930 AT5G62000.1 37.931 145 79 4 706 845 683 821 2.37e-18 90.9
Msa0146930 AT5G62000.4 56.140 342 141 4 39 376 57 393 1.65e-122 391
Msa0146930 AT5G62000.4 35.838 173 88 6 706 861 683 849 1.11e-18 92.0
Msa0146930 AT5G37020.3 65.614 285 94 3 117 398 1 284 1.24e-117 374
Msa0146930 AT5G37020.3 51.613 93 45 0 757 849 610 702 1.19e-24 110
Msa0146930 AT1G59750.1 53.216 342 150 4 39 376 18 353 1.94e-115 367
Msa0146930 AT1G59750.1 48.039 102 49 3 756 855 541 640 5.76e-19 92.4
Msa0146930 AT1G59750.3 53.216 342 150 4 39 376 18 353 1.94e-115 367
Msa0146930 AT1G59750.3 48.039 102 49 3 756 855 541 640 5.76e-19 92.4
Msa0146930 AT1G59750.4 53.216 342 150 4 39 376 18 353 1.94e-115 366
Msa0146930 AT1G59750.4 48.039 102 49 3 756 855 536 635 6.21e-19 92.4
Msa0146930 AT1G59750.2 53.216 342 150 4 39 376 18 353 2.27e-115 366
Msa0146930 AT1G59750.2 48.039 102 49 3 756 855 538 637 6.24e-19 92.4
Msa0146930 AT2G46530.1 51.429 350 162 6 40 386 18 362 4.58e-111 353
Msa0146930 AT2G46530.1 40.000 95 54 2 757 850 490 582 1.95e-14 77.8
Msa0146930 AT2G46530.3 52.367 338 155 5 40 376 39 371 7.34e-111 353
Msa0146930 AT2G46530.3 40.000 95 54 2 757 850 511 603 2.26e-14 77.8
Msa0146930 AT3G61830.1 52.212 339 154 6 40 376 22 354 1.33e-109 349
Msa0146930 AT3G61830.1 46.739 92 44 3 757 846 489 577 7.72e-15 79.0
Msa0146930 AT5G60450.2 50.838 358 161 7 35 381 33 386 4.38e-108 350
Msa0146930 AT5G60450.2 38.835 103 61 2 757 858 641 742 1.56e-16 84.7
Msa0146930 AT4G23980.2 52.326 344 147 6 40 376 9 342 2.18e-107 344
Msa0146930 AT4G23980.2 46.154 91 46 2 757 846 521 609 2.19e-15 80.9
Msa0146930 AT4G23980.1 52.326 344 147 6 40 376 9 342 2.64e-107 344
Msa0146930 AT4G23980.1 46.154 91 46 2 757 846 523 611 2.40e-15 80.9
Msa0146930 AT5G60450.1 51.275 353 157 7 40 381 62 410 2.98e-107 348
Msa0146930 AT5G60450.1 38.835 103 61 2 757 858 665 766 1.76e-16 84.7
Msa0146930 AT2G33860.1 49.284 349 158 4 43 381 54 393 3.46e-103 332
Msa0146930 AT3G61830.2 51.623 308 141 6 71 376 2 303 3.41e-94 307
Msa0146930 AT3G61830.2 46.739 92 44 3 757 846 438 526 5.78e-15 79.3
Msa0146930 AT1G34410.1 44.737 342 181 5 35 376 19 352 6.65e-93 305
Msa0146930 AT1G34410.1 40.909 88 49 2 757 843 511 596 4.69e-12 70.1
Msa0146930 AT1G35540.1 43.860 342 184 6 35 376 19 352 1.04e-90 299
Msa0146930 AT1G35540.1 40.000 90 51 2 757 845 510 597 1.98e-12 71.2
Msa0146930 AT1G35240.1 43.567 342 185 5 35 376 19 352 1.02e-89 296
Msa0146930 AT1G35240.1 42.045 88 48 2 757 843 497 582 2.78e-12 70.9
Msa0146930 AT1G35520.1 44.611 334 177 6 43 376 27 352 4.69e-88 292
Msa0146930 AT1G35520.1 40.741 81 45 2 757 836 511 589 2.62e-11 67.8
Msa0146930 AT1G34310.1 43.567 342 185 6 35 376 19 352 4.37e-87 289
Msa0146930 AT1G34310.1 39.506 81 46 2 757 836 511 589 6.77e-11 66.2
Msa0146930 AT1G34390.1 44.737 342 179 7 35 376 19 350 3.85e-85 284
Msa0146930 AT1G34170.1 41.071 336 188 6 43 376 25 352 5.41e-80 268
Msa0146930 AT2G46530.2 51.711 263 121 5 116 376 5 263 4.31e-78 263
Msa0146930 AT2G46530.2 40.000 95 54 2 757 850 403 495 1.14e-14 78.2
Msa0146930 AT2G33860.2 54.661 236 106 1 146 381 2 236 7.05e-78 260
Msa0146930 AT4G30080.1 39.043 397 188 11 35 389 11 395 2.57e-77 265
Msa0146930 AT2G28350.2 38.501 387 180 8 38 376 5 381 3.77e-77 264
Msa0146930 AT2G28350.1 38.501 387 180 8 38 376 5 381 7.25e-77 264
Msa0146930 AT1G34170.2 38.988 336 169 5 43 376 25 326 5.22e-74 250
Msa0146930 AT1G34170.3 38.988 336 169 5 43 376 25 326 2.30e-73 251
Msa0146930 AT1G77850.1 36.412 379 188 10 37 376 13 377 1.33e-59 214
Msa0146930 AT1G77850.2 36.412 379 188 10 37 376 13 377 1.40e-59 214
Msa0146930 AT1G43950.1 44.076 211 111 5 35 245 19 222 1.27e-47 169

Find 195 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAATGAATGCATGTTAA+AGG 0.173174 1_4:-6716639 None:intergenic
CTTCTTATTCTGCAGATATA+TGG 0.173372 1_4:+6715901 Msa0146930:intron
GCCGTTGCAATCTGGATATT+TGG 0.176308 1_4:+6716257 Msa0146930:CDS
AAATACAGAAAATCTGTTTA+TGG 0.194457 1_4:+6715732 Msa0146930:CDS
GGAAAGATGAAAAGGCTTTC+TGG 0.205659 1_4:-6716210 None:intergenic
CATAATTATCCCACACTTCT+TGG 0.212825 1_4:-6717045 None:intergenic
AGACATTAAATTCAGAATTA+TGG 0.240617 1_4:+6713724 Msa0146930:CDS
TTTATTAAAGTACCCGAAAA+TGG 0.240625 1_4:+6716395 Msa0146930:CDS
TTAGAACCAGGCCACCTTAA+AGG 0.263939 1_4:-6715953 None:intergenic
TAAGGTGGCCTGGTTCTAAA+TGG 0.306709 1_4:+6715957 Msa0146930:CDS
AGCAAAATAGGGTTAGTGTT+TGG 0.311735 1_4:+6716175 Msa0146930:CDS
CTTTCAGCTGGCATGAGATT+TGG 0.311827 1_4:+6715762 Msa0146930:CDS
TCAGTGATGTTGATCCTTTA+AGG 0.313308 1_4:+6715939 Msa0146930:CDS
TCTTCACTTCCTATTGGCTT+TGG 0.314981 1_4:-6718329 None:intergenic
GCAAAATAGGGTTAGTGTTT+GGG 0.321539 1_4:+6716176 Msa0146930:CDS
TTCTAAATGGCGAAATATTC+AGG 0.322393 1_4:+6715970 Msa0146930:CDS
TTGTTGCATGATAGGTAAAA+AGG 0.323540 1_4:-6716513 None:intergenic
CGCGCAATTGAATGCATGTT+TGG 0.329869 1_4:+6717621 Msa0146930:CDS
TGGGAATGGGATCGGAATAT+TGG 0.330913 1_4:+6718073 Msa0146930:three_prime_UTR
GCTGTGGTGATAAGCAAAAT+AGG 0.333658 1_4:+6716163 Msa0146930:CDS
GAACTACAATGACACTCATT+TGG 0.334328 1_4:+6718053 Msa0146930:three_prime_UTR
TTCGTCTAATAGTGGATTAA+TGG 0.335254 1_4:+6718267 Msa0146930:three_prime_UTR
TTCTTATTCTGCAGATATAT+GGG 0.354261 1_4:+6715902 Msa0146930:intron
TGAGCAAAAGTCGTCGAAAA+TGG 0.355292 1_4:-6717188 None:intergenic
ATTGAATCTTCGTCTAATAG+TGG 0.360283 1_4:+6718259 Msa0146930:three_prime_UTR
GTGGATTAATGGCAAAGATT+TGG 0.360595 1_4:+6718278 Msa0146930:three_prime_UTR
TGCATGTTAAAGGTGTTATT+AGG 0.363217 1_4:-6716629 None:intergenic
TGCTAGTTGGAGATGATCCT+TGG 0.365242 1_4:+6717718 Msa0146930:CDS
CAATACTACATTACAAGTTA+AGG 0.370100 1_4:-6718191 None:intergenic
GATGGAAGACTAGGGTAGTT+TGG 0.373410 1_4:-6714047 None:intergenic
CCGTTGCAATCTGGATATTT+GGG 0.374109 1_4:+6716258 Msa0146930:CDS
GCATAATCTTGTTGCATGAT+AGG 0.375254 1_4:-6716521 None:intergenic
AATACAGAAAATCTGTTTAT+GGG 0.375476 1_4:+6715733 Msa0146930:CDS
GTTTGTTTGTCGGCTCAAAA+AGG 0.375508 1_4:+6715104 Msa0146930:CDS
TATGGACTAAACAAACCTTC+AGG 0.377959 1_4:+6718100 Msa0146930:three_prime_UTR
GCTGTTTACAATAGAAGAAT+CGG 0.384358 1_4:-6716936 None:intergenic
TTTGATTATAATATGTTAGT+TGG 0.389191 1_4:-6716802 None:intergenic
TCTTGCAAGGGAACTCTTGT+AGG 0.393966 1_4:-6716545 None:intergenic
GTGTTTCCGGTATCTGAGTT+TGG 0.395238 1_4:+6714373 Msa0146930:CDS
TTGTAAATAAACAGGCTGAA+TGG 0.397672 1_4:+6716130 Msa0146930:intron
CACACTTCTTGGTTCATTGA+AGG 0.399760 1_4:-6717034 None:intergenic
GTTGTGAGAAGGTGTCTCTT+TGG 0.403427 1_4:-6715073 None:intergenic
GTGCTTGAAAGGTGAACTTT+CGG 0.411398 1_4:-6716596 None:intergenic
GTTAAAGAGATGAGTGAAGA+AGG 0.411917 1_4:+6717936 Msa0146930:CDS
CATGGCTTCCTTAGAAGAAA+AGG 0.416918 1_4:+6713487 Msa0146930:exon
CTAAAACGGCCGTTGCAATC+TGG 0.417975 1_4:+6716249 Msa0146930:CDS
AACTACAATGACACTCATTT+GGG 0.418163 1_4:+6718054 Msa0146930:three_prime_UTR
TGTAAATAAACAGGCTGAAT+GGG 0.419597 1_4:+6716131 Msa0146930:intron
TTCTGCAGAATAATAACTCT+TGG 0.422237 1_4:+6717386 Msa0146930:CDS
GATCGGAATATTGGTAGATA+TGG 0.423094 1_4:+6718082 Msa0146930:three_prime_UTR
TTGTTGCAGCTTTCAAAAGA+TGG 0.424288 1_4:-6716755 None:intergenic
CTGAATGACACAAAAGGTTC+CGG 0.425971 1_4:+6717657 Msa0146930:CDS
ATGTTACCTTTGTGTAGGTT+CGG 0.426676 1_4:-6717429 None:intergenic
CACCCTCAAGATTGCATGGT+TGG 0.430745 1_4:+6717232 Msa0146930:CDS
GATGTTTGAGACCGAGGAAT+CGG 0.432905 1_4:+6715788 Msa0146930:CDS
GAACAACAAGTTCTTGAGTT+GGG 0.438497 1_4:-6714619 None:intergenic
ATTGTTGAAAAGTGAGCAAC+CGG 0.440957 1_4:+6716655 Msa0146930:CDS
CTTGTGTCATTGCCTCAAGT+GGG 0.444777 1_4:+6713765 Msa0146930:CDS
CTCATCTCTTTAACTTCTGA+AGG 0.449266 1_4:-6717927 None:intergenic
GATCTTGTGTAGGGAATTTG+TGG 0.451328 1_4:+6717875 Msa0146930:intron
TTTAGGCTTGATGTCAAAGA+AGG 0.457105 1_4:-6716231 None:intergenic
ACTCTACAACCAAAGCCAAT+AGG 0.459069 1_4:+6718320 Msa0146930:three_prime_UTR
TATGGGACTCAGCTTTCAGC+TGG 0.462437 1_4:+6715750 Msa0146930:CDS
AGATATATGGGTACAATTGT+AGG 0.463723 1_4:+6715914 Msa0146930:intron
CTTTGACATCAAGCCTAAAA+CGG 0.464342 1_4:+6716235 Msa0146930:CDS
CACAATTGCGAGTTGGTGTA+AGG 0.467431 1_4:+6715453 Msa0146930:CDS
CAATGACACTCATTTGGGAA+TGG 0.469284 1_4:+6718059 Msa0146930:three_prime_UTR
AAAAGTGTTGGAGGAGTTGT+TGG 0.469435 1_4:+6713512 Msa0146930:CDS
GAATTATGGCATGCTTGTGC+TGG 0.470225 1_4:+6713738 Msa0146930:CDS
GCTAGTTGGAGATGATCCTT+GGG 0.470617 1_4:+6717719 Msa0146930:CDS
GAGTAAACTAGTTTAGTTGT+TGG 0.470860 1_4:-6718301 None:intergenic
TTTAGTCCAAACTCAGATAC+CGG 0.471165 1_4:-6714379 None:intergenic
TCAAAGAAGGAAAGATGAAA+AGG 0.473079 1_4:-6716218 None:intergenic
CATTGACACAAATTTCACTT+TGG 0.474844 1_4:-6717111 None:intergenic
CCTGTTCACTATGTCCTTGA+GGG 0.475837 1_4:-6713806 None:intergenic
AATGACACTCATTTGGGAAT+GGG 0.477449 1_4:+6718060 Msa0146930:three_prime_UTR
GTTGATCCTTTAAGGTGGCC+TGG 0.478730 1_4:+6715947 Msa0146930:CDS
GAGAGTGATGTTCTGCTAGT+TGG 0.482377 1_4:+6717705 Msa0146930:CDS
TAATAGTGTCAGTACCACTA+TGG 0.485813 1_4:+6717144 Msa0146930:CDS
TCTTGTGTCATTGCCTCAAG+TGG 0.485817 1_4:+6713764 Msa0146930:CDS
CCCTCAAGGACATAGTGAAC+AGG 0.486634 1_4:+6713806 Msa0146930:CDS
AAGAGACACCTTCTCACAAC+GGG 0.488034 1_4:+6715076 Msa0146930:CDS
CTGTGGTGATAAGCAAAATA+GGG 0.490117 1_4:+6716164 Msa0146930:CDS
ACGGGTTGGAGTTTGTTTGT+CGG 0.492443 1_4:+6715094 Msa0146930:CDS
TCTAACTGAGGCTGCTGCAT+TGG 0.492863 1_4:-6716872 None:intergenic
AGCTTACAGAATTCAGTGGT+TGG 0.493036 1_4:-6714241 None:intergenic
GAAGAAAAGGCTAAAAGTGT+TGG 0.493255 1_4:+6713500 Msa0146930:CDS
ACCTTTGTGTAGGTTCGGAT+TGG 0.493613 1_4:-6717424 None:intergenic
AAAATGGTGTTTGAAGTAGA+AGG 0.495433 1_4:-6717172 None:intergenic
GGGAAGTCAAACATATGATC+AGG 0.498477 1_4:-6716734 None:intergenic
GAAAAGGCTAAAAGTGTTGG+AGG 0.498865 1_4:+6713503 Msa0146930:CDS
ATGTTTGAGACCGAGGAATC+GGG 0.501076 1_4:+6715789 Msa0146930:CDS
AGAGTTGTCTCGCAGAGAAA+AGG 0.502279 1_4:-6717320 None:intergenic
ATCTTGTGTAGGGAATTTGT+GGG 0.505590 1_4:+6717876 Msa0146930:intron
AACAACAAGTTCTTGAGTTG+GGG 0.511857 1_4:-6714618 None:intergenic
AGATAGTTGTGTTGTGAAAG+TGG 0.513141 1_4:+6713458 Msa0146930:five_prime_UTR
CTGTTTACAATAGAAGAATC+GGG 0.516285 1_4:-6716935 None:intergenic
ATGGACTAAACAAACCTTCA+GGG 0.519472 1_4:+6718101 Msa0146930:three_prime_UTR
CACTCATTTGGGAATGGGAT+CGG 0.519615 1_4:+6718065 Msa0146930:three_prime_UTR
TGAATGTTCAATGAATCAAA+AGG 0.521182 1_4:+6718161 Msa0146930:three_prime_UTR
GGATTCTCTATTGCCTGTGT+GGG 0.521656 1_4:-6716575 None:intergenic
CGGATTCTCTATTGCCTGTG+TGG 0.521744 1_4:-6716576 None:intergenic
TACGTATACTAGTTTCCATC+CGG 0.523910 1_4:-6717676 None:intergenic
TGTGTCATTGCCTCAAGTGG+GGG 0.524294 1_4:+6713767 Msa0146930:CDS
TTAAAGAGATGAGTGAAGAA+GGG 0.524881 1_4:+6717937 Msa0146930:CDS
CGAACAACAAGTTCTTGAGT+TGG 0.526064 1_4:-6714620 None:intergenic
TGCCAACCATGCAATCTTGA+GGG 0.526265 1_4:-6717234 None:intergenic
CCGAGGAATCGGGTAAGCGC+AGG 0.529760 1_4:+6715799 Msa0146930:CDS
GAGATTTGCATGATAATACA+TGG 0.533645 1_4:+6714642 Msa0146930:CDS
AACTTAAGTTCTAGTCAAGA+TGG 0.540183 1_4:+6717256 Msa0146930:CDS
CCATTGTTGTTGATCACCTG+TGG 0.540797 1_4:-6716488 None:intergenic
TTCGGTTCCACGCAGAGCTG+CGG 0.543545 1_4:+6714474 Msa0146930:CDS
CCTGCGCTTACCCGATTCCT+CGG 0.545092 1_4:-6715799 None:intergenic
TTGTGTCATTGCCTCAAGTG+GGG 0.545165 1_4:+6713766 Msa0146930:CDS
GGAAAAGCTATTTCCTCCGT+TGG 0.546146 1_4:+6714495 Msa0146930:CDS
TGTTGCAGCTTTCAAAAGAT+GGG 0.552162 1_4:-6716754 None:intergenic
TGATGAGTGGTTTCACTCAA+AGG 0.555163 1_4:+6712988 Msa0146930:five_prime_UTR
TCAGCACCCTCAAGATTGCA+TGG 0.555417 1_4:+6717228 Msa0146930:CDS
CAGGCTGAATGGGATGAGCC+AGG 0.556321 1_4:+6716141 Msa0146930:intron
TGTGGGCTTCATATCTTGCA+AGG 0.556322 1_4:-6716558 None:intergenic
GTATGCTCTCTGTGCTTGAA+AGG 0.557270 1_4:-6716607 None:intergenic
TGGTATGATGTTTGAGACCG+AGG 0.557923 1_4:+6715782 Msa0146930:CDS
CTCAGATAGACGTAGACGAA+TGG 0.560252 1_4:+6716966 Msa0146930:CDS
ATATTTCGCCATTTAGAACC+AGG 0.561114 1_4:-6715965 None:intergenic
TGGAGCATGTCAATCATTTG+AGG 0.562075 1_4:-6716911 None:intergenic
ACCTGTTCACTATGTCCTTG+AGG 0.562382 1_4:-6713807 None:intergenic
TTCAATGAACCAAGAAGTGT+GGG 0.563061 1_4:+6717036 Msa0146930:CDS
TAGCAGAAGTAATCTGAGAC+TGG 0.563668 1_4:-6717279 None:intergenic
TCAGCAGAAAGTACTGATGA+TGG 0.564399 1_4:-6715503 None:intergenic
AACAACTGAGATGGAAGACT+AGG 0.565825 1_4:-6714056 None:intergenic
TGGTTCATTGAAGGTATCGA+GGG 0.572733 1_4:-6717025 None:intergenic
AACTCCAACCCGTTGTGAGA+AGG 0.573060 1_4:-6715084 None:intergenic
AAATAATGTTACCTTTGTGT+AGG 0.573136 1_4:-6717434 None:intergenic
TCAGAGTGTGATGTGATGAG+TGG 0.573357 1_4:+6712975 Msa0146930:five_prime_UTR
CTTGTCTATTACTTCCCTCA+AGG 0.578102 1_4:+6713792 Msa0146930:CDS
GAATGGGATGAGCCAGGCTG+TGG 0.578977 1_4:+6716147 Msa0146930:CDS
GGATTGTAGAAAATCGTGAA+TGG 0.579311 1_4:-6715581 None:intergenic
AATTGAATGCATGTTTGGAC+TGG 0.580066 1_4:+6717626 Msa0146930:CDS
CTAAACAGTGGAGCATTGCA+AGG 0.581354 1_4:+6717969 Msa0146930:CDS
TTGCCAACCATGCAATCTTG+AGG 0.582580 1_4:-6717235 None:intergenic
CTTCAATGAACCAAGAAGTG+TGG 0.584734 1_4:+6717035 Msa0146930:CDS
GAACTAGTATGAGCGAGTAA+TGG 0.586998 1_4:-6716845 None:intergenic
GACACCTTCTCACAACGGGT+TGG 0.588416 1_4:+6715080 Msa0146930:CDS
ACTTGACACAACAACTGAGA+TGG 0.591159 1_4:-6714065 None:intergenic
GTGTCATTGCCTCAAGTGGG+GGG 0.591608 1_4:+6713768 Msa0146930:CDS
ATCGAGGGATTCACTACTTG+AGG 0.592078 1_4:-6717010 None:intergenic
TTACAATAGAAGAATCGGGT+TGG 0.596283 1_4:-6716931 None:intergenic
TTGGTTCATTGAAGGTATCG+AGG 0.596449 1_4:-6717026 None:intergenic
AGTGTTGGAGGAGTTGTTGG+TGG 0.597797 1_4:+6713515 Msa0146930:CDS
ATATAGCTTACAGAATTCAG+TGG 0.600450 1_4:-6714245 None:intergenic
TGGACTAAACAAACCTTCAG+GGG 0.601172 1_4:+6718102 Msa0146930:three_prime_UTR
CATTCGTCTACGTCTATCTG+AGG 0.602416 1_4:-6716965 None:intergenic
CTGTGATGCAGAAAATGAGT+GGG 0.602871 1_4:+6716352 Msa0146930:intron
CCCAAATATCCAGATTGCAA+CGG 0.608952 1_4:-6716258 None:intergenic
ACCCGAAAATGGAGGAACAA+TGG 0.612188 1_4:+6716406 Msa0146930:CDS
ATTAAAGTACCCGAAAATGG+AGG 0.613065 1_4:+6716398 Msa0146930:CDS
TAATTCAAAATTAGAATCTG+AGG 0.616867 1_4:+6716706 Msa0146930:CDS
GGGTAGGAAACTTACTCCCA+AGG 0.617581 1_4:-6717735 None:intergenic
AGTGGAATAACAAAATCTGA+AGG 0.623941 1_4:-6715705 None:intergenic
ATGACACAAAAGGTTCCGGA+TGG 0.629064 1_4:+6717661 Msa0146930:CDS
GCAAGATATGAAGCCCACAC+AGG 0.629616 1_4:+6716562 Msa0146930:CDS
GGTCTGCTGAATGACACAAA+AGG 0.630277 1_4:+6717651 Msa0146930:CDS
TACTTTCATCAAAATCAACA+TGG 0.633033 1_4:-6717360 None:intergenic
AAAGAAATGCAAGAACATTG+TGG 0.633626 1_4:+6713569 Msa0146930:CDS
GAGAAGTCACAATTGCGAGT+TGG 0.635107 1_4:+6715446 Msa0146930:CDS
GTGGGCTTCATATCTTGCAA+GGG 0.637703 1_4:-6716557 None:intergenic
ACAACTGAGATGGAAGACTA+GGG 0.639765 1_4:-6714055 None:intergenic
ACTTGAGGCAATGACACAAG+AGG 0.641095 1_4:-6713762 None:intergenic
TTGTGAAAGTGGAACAAACA+TGG 0.644036 1_4:+6713469 Msa0146930:exon
ATTAGCAGCAGCATGAGCTG+CGG 0.648415 1_4:-6715552 None:intergenic
GCGAGTGATACTAGCACACA+TGG 0.654643 1_4:+6714445 Msa0146930:CDS
CCACAGGTGATCAACAACAA+TGG 0.657687 1_4:+6716488 Msa0146930:CDS
GACATTGATGATTCTAACTG+AGG 0.657820 1_4:-6716884 None:intergenic
TCTCTGCGAGACAACTCTGG+TGG 0.660933 1_4:+6717325 Msa0146930:CDS
AGTAGAAGGATCAACCATAG+TGG 0.662515 1_4:-6717158 None:intergenic
CTTGAGGCAATGACACAAGA+GGG 0.667127 1_4:-6713761 None:intergenic
GGGATGAAGCTTCTAAACAG+TGG 0.667863 1_4:+6717957 Msa0146930:CDS
CAAACATGCATTCAATTGCG+CGG 0.668814 1_4:-6717620 None:intergenic
GTGATGTTGATCCTTTAAGG+TGG 0.669203 1_4:+6715942 Msa0146930:CDS
GAATGCATGTTTGGACTGGA+CGG 0.670392 1_4:+6717630 Msa0146930:CDS
ACAACAAGTTCTTGAGTTGG+GGG 0.675973 1_4:-6714617 None:intergenic
TCTTGTGTAGGGAATTTGTG+GGG 0.680812 1_4:+6717877 Msa0146930:intron
ACTAAACAAACCTTCAGGGG+GGG 0.681527 1_4:+6718105 Msa0146930:three_prime_UTR
ACATTTCGACATATTTACCG+AGG 0.686602 1_4:+6714665 Msa0146930:CDS
GACTAAACAAACCTTCAGGG+GGG 0.689076 1_4:+6718104 Msa0146930:three_prime_UTR
GGACTAAACAAACCTTCAGG+GGG 0.690373 1_4:+6718103 Msa0146930:three_prime_UTR
AGGGTAGTTTGGAATCTGTG+AGG 0.694049 1_4:-6714036 None:intergenic
TCTGCTGATAGCATGCACAT+TGG 0.695779 1_4:+6715518 Msa0146930:CDS
AAAGAGACACCTTCTCACAA+CGG 0.702454 1_4:+6715075 Msa0146930:CDS
GTGATAATATTCGTATACAG+CGG 0.703562 1_4:-6717905 None:intergenic
CTATATAGCCTTACCAACGG+AGG 0.709635 1_4:-6714508 None:intergenic
TCTGTGATGCAGAAAATGAG+TGG 0.714141 1_4:+6716351 Msa0146930:intron
ACCAATCCGAACCTACACAA+AGG 0.719172 1_4:+6717423 Msa0146930:CDS
AGTGATACTAGCACACATGG+TGG 0.741127 1_4:+6714448 Msa0146930:CDS
TGTGATGCAGAAAATGAGTG+GGG 0.755513 1_4:+6716353 Msa0146930:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTTTAATATCTAAAAA+GGG - chr1_4:6717841-6717860 None:intergenic 10.0%
!!! AAAAGTTTTAATATCTAAAA+AGG - chr1_4:6717842-6717861 None:intergenic 10.0%
!!! TTTTTAGATATTAAAACTTT+TGG + chr1_4:6717841-6717860 Msa0146930:intron 10.0%
!!! ATTACTATTGTTATGTTTTA+TGG + chr1_4:6713621-6713640 Msa0146930:intron 15.0%
!!! ATTTTGATTTGATTCATATT+TGG + chr1_4:6713672-6713691 Msa0146930:intron 15.0%
!! ATTATACTTATAAGTTTCTT+TGG + chr1_4:6713905-6713924 Msa0146930:intron 15.0%
!! ATCAAAACATACAATTTAAA+GGG - chr1_4:6714175-6714194 None:intergenic 15.0%
!! TATCAAAACATACAATTTAA+AGG - chr1_4:6714176-6714195 None:intergenic 15.0%
!!! AAATTGTATGTTTTGATAAT+AGG + chr1_4:6714178-6714197 Msa0146930:intron 15.0%
!!! CAATTTTTTCAGATTATTAT+CGG + chr1_4:6714798-6714817 Msa0146930:intron 15.0%
!! ATCTAAAAATATTATATGTC+AGG - chr1_4:6715636-6715655 None:intergenic 15.0%
!! AAATTTCTTTGTAAATAAAC+AGG + chr1_4:6716122-6716141 Msa0146930:intron 15.0%
!!! AGATTCTAATTTTGAATTAT+CGG - chr1_4:6716705-6716724 None:intergenic 15.0%
!! TTTGATTATAATATGTTAGT+TGG - chr1_4:6716805-6716824 None:intergenic 15.0%
!!! TAAGTTTAATAGTCTTATTT+TGG + chr1_4:6717789-6717808 Msa0146930:intron 15.0%
!!! ATTAATGATGATGATCAAAA+TGG + chr1_4:6713265-6713284 Msa0146930:intron 20.0%
!! TAGTAATTAAGAAAAAGAGA+AGG - chr1_4:6713608-6713627 None:intergenic 20.0%
!!! GTTGTACTAATTTTTGTTTA+GGG + chr1_4:6713694-6713713 Msa0146930:intron 20.0%
!!! TTGTACTAATTTTTGTTTAG+GGG + chr1_4:6713695-6713714 Msa0146930:intron 20.0%
!! AGACATTAAATTCAGAATTA+TGG + chr1_4:6713724-6713743 Msa0146930:CDS 20.0%
!! TCAAAACATACAATTTAAAG+GGG - chr1_4:6714174-6714193 None:intergenic 20.0%
!!! ATTTTCCATTAATTTGTGTT+AGG + chr1_4:6714342-6714361 Msa0146930:intron 20.0%
!!! TTTTTCCTAACACAAATTAA+TGG - chr1_4:6714350-6714369 None:intergenic 20.0%
!!! AATATTTTTAGATCTACTTG+TGG + chr1_4:6715643-6715662 Msa0146930:intron 20.0%
!! AAATACAGAAAATCTGTTTA+TGG + chr1_4:6715732-6715751 Msa0146930:CDS 20.0%
!! AATACAGAAAATCTGTTTAT+GGG + chr1_4:6715733-6715752 Msa0146930:CDS 20.0%
!! CAACTATATTACTATGATTA+AGG - chr1_4:6716094-6716113 None:intergenic 20.0%
!! CTTAATCATAGTAATATAGT+TGG + chr1_4:6716092-6716111 Msa0146930:intron 20.0%
!!! TAATTTTGAATTATCGGTTT+TGG - chr1_4:6716699-6716718 None:intergenic 20.0%
!! TAATTCAAAATTAGAATCTG+AGG + chr1_4:6716706-6716725 Msa0146930:CDS 20.0%
!! CAACATTGAAAAAGTTAATA+CGG + chr1_4:6716775-6716794 Msa0146930:CDS 20.0%
!!! TAACATTATTTCTGTAATGT+TGG + chr1_4:6717446-6717465 Msa0146930:intron 20.0%
! TCAAGTCAATACAACAAAAT+GGG + chr1_4:6713332-6713351 Msa0146930:intron 25.0%
! TTATTCCTCTTTATTGTGTT+TGG + chr1_4:6713403-6713422 Msa0146930:intron 25.0%
!!! TTATGGTTTCTTAGTTTTCT+TGG + chr1_4:6713638-6713657 Msa0146930:intron 25.0%
!!! GGTTGTACTAATTTTTGTTT+AGG + chr1_4:6713693-6713712 Msa0146930:intron 25.0%
!!! AGATTCTAGTTTCTATTGAA+TGG + chr1_4:6713941-6713960 Msa0146930:intron 25.0%
! TTTGTACATCTGAATGTTAT+TGG + chr1_4:6714297-6714316 Msa0146930:intron 25.0%
! AAAACACACTAATCAAATGA+GGG - chr1_4:6714574-6714593 None:intergenic 25.0%
! ATAGTTCAATCTATGTCTAT+TGG + chr1_4:6714863-6714882 Msa0146930:intron 25.0%
!!! ATTGGTTTGGTAAAATAAAC+AGG + chr1_4:6714881-6714900 Msa0146930:intron 25.0%
! TAAACAGGAATAAATGTTTG+TGG + chr1_4:6714896-6714915 Msa0146930:intron 25.0%
!! TCTAAGACTAATTATTTCGA+AGG - chr1_4:6714996-6715015 None:intergenic 25.0%
! TGACCTACATGAAAAATTTA+GGG - chr1_4:6715052-6715071 None:intergenic 25.0%
! CTCTTATGTTATCTGAATAT+AGG + chr1_4:6715215-6715234 Msa0146930:intron 25.0%
! TTTCGATATTAGGAAAATTG+TGG + chr1_4:6715328-6715347 Msa0146930:intron 25.0%
! TGTTATGTAGAGATGATTAT+TGG - chr1_4:6715389-6715408 None:intergenic 25.0%
! AAACATATTTAGGTATACCT+TGG - chr1_4:6715605-6715624 None:intergenic 25.0%
! AAAATATTATATGTCAGGTG+AGG - chr1_4:6715631-6715650 None:intergenic 25.0%
! TTTCTTCTTGAGTGTATTAT+TGG + chr1_4:6715672-6715691 Msa0146930:intron 25.0%
! ATCAACTATTCTTGTTAGTT+GGG - chr1_4:6715873-6715892 None:intergenic 25.0%
! TATCAACTATTCTTGTTAGT+TGG - chr1_4:6715874-6715893 None:intergenic 25.0%
! TTCTTATTCTGCAGATATAT+GGG + chr1_4:6715902-6715921 Msa0146930:intron 25.0%
! AATGGTAGATCTTAATAACT+GGG - chr1_4:6716015-6716034 None:intergenic 25.0%
! TAATGGTAGATCTTAATAAC+TGG - chr1_4:6716016-6716035 None:intergenic 25.0%
! CTATAAAACATACTCTATGT+TGG + chr1_4:6716067-6716086 Msa0146930:intron 25.0%
!!! AAGTACAAGACATTTTGATA+AGG - chr1_4:6716309-6716328 None:intergenic 25.0%
!! TTGATCACTAGTAGTTATTT+TGG + chr1_4:6716327-6716346 Msa0146930:intron 25.0%
!!! TTTTCGGGTACTTTAATAAA+GGG - chr1_4:6716395-6716414 None:intergenic 25.0%
!!! ATTTTCGGGTACTTTAATAA+AGG - chr1_4:6716396-6716415 None:intergenic 25.0%
!! TTTATTAAAGTACCCGAAAA+TGG + chr1_4:6716395-6716414 Msa0146930:CDS 25.0%
!!! ATGTCAAGAATTTTAACTTG+AGG + chr1_4:6717065-6717084 Msa0146930:CDS 25.0%
!!! TGTCAAGAATTTTAACTTGA+GGG + chr1_4:6717066-6717085 Msa0146930:CDS 25.0%
! TACTTTCATCAAAATCAACA+TGG - chr1_4:6717363-6717382 None:intergenic 25.0%
! AAATAATGTTACCTTTGTGT+AGG - chr1_4:6717437-6717456 None:intergenic 25.0%
! TATACAAGATCGAAACAAAT+TGG - chr1_4:6717493-6717512 None:intergenic 25.0%
! TGAATGTTCAATGAATCAAA+AGG + chr1_4:6718161-6718180 Msa0146930:three_prime_UTR 25.0%
! CAATACTACATTACAAGTTA+AGG - chr1_4:6718194-6718213 None:intergenic 25.0%
GGAACAAAAACTGCTAAAAA+AGG - chr1_4:6713156-6713175 None:intergenic 30.0%
ATGTGAAAATGAGTGAACTA+AGG - chr1_4:6713177-6713196 None:intergenic 30.0%
! TCACTCATTTTCACATTACT+TGG + chr1_4:6713181-6713200 Msa0146930:intron 30.0%
! CACTCATTTTCACATTACTT+GGG + chr1_4:6713182-6713201 Msa0146930:intron 30.0%
AAAAGGGTAGTACAAAACAA+GGG - chr1_4:6713292-6713311 None:intergenic 30.0%
GAGAAGTAGAAGAAACAAAA+GGG - chr1_4:6713308-6713327 None:intergenic 30.0%
AGAGAAGTAGAAGAAACAAA+AGG - chr1_4:6713309-6713328 None:intergenic 30.0%
CTCAAGTCAATACAACAAAA+TGG + chr1_4:6713331-6713350 Msa0146930:intron 30.0%
CAAGTCAATACAACAAAATG+GGG + chr1_4:6713333-6713352 Msa0146930:intron 30.0%
!!! GGTGGTAGTGTTTATTTTTT+TGG + chr1_4:6713354-6713373 Msa0146930:intron 30.0%
!! ACTTTTAGCCTTTTCTTCTA+AGG - chr1_4:6713498-6713517 None:intergenic 30.0%
AAAGAAATGCAAGAACATTG+TGG + chr1_4:6713569-6713588 Msa0146930:CDS 30.0%
! GTTTGTGTTTTGTCCTTTTA+AGG + chr1_4:6713986-6714005 Msa0146930:intron 30.0%
ATATAGCTTACAGAATTCAG+TGG - chr1_4:6714248-6714267 None:intergenic 30.0%
!! TTAGGAAAAAGAAGTGTTTC+CGG + chr1_4:6714360-6714379 Msa0146930:intron 30.0%
CAAAACACACTAATCAAATG+AGG - chr1_4:6714575-6714594 None:intergenic 30.0%
! CTCATTTGATTAGTGTGTTT+TGG + chr1_4:6714573-6714592 Msa0146930:intron 30.0%
!!! GATTAGTGTGTTTTGGTTTT+AGG + chr1_4:6714580-6714599 Msa0146930:intron 30.0%
GAGATTTGCATGATAATACA+TGG + chr1_4:6714642-6714661 Msa0146930:CDS 30.0%
! ACACTGTTAATCTAAAGTGT+AGG - chr1_4:6714726-6714745 None:intergenic 30.0%
TTTCAGATTATTATCGGTGT+CGG + chr1_4:6714804-6714823 Msa0146930:intron 30.0%
! TCAATCTATGTCTATTGGTT+TGG + chr1_4:6714868-6714887 Msa0146930:intron 30.0%
!! CTGCAACTTTGTTATTGTTT+GGG + chr1_4:6714947-6714966 Msa0146930:intron 30.0%
AAATTTAGGGGAAAAACGTA+AGG - chr1_4:6715039-6715058 None:intergenic 30.0%
! TTCCCCTAAATTTTTCATGT+AGG + chr1_4:6715046-6715065 Msa0146930:intron 30.0%
GACCTACATGAAAAATTTAG+GGG - chr1_4:6715051-6715070 None:intergenic 30.0%
CTGACCTACATGAAAAATTT+AGG - chr1_4:6715053-6715072 None:intergenic 30.0%
!!! GACTTGTTTTTTTTTCTCCA+TGG + chr1_4:6715285-6715304 Msa0146930:intron 30.0%
! ATGCAATGGTTTTCGATATT+AGG + chr1_4:6715318-6715337 Msa0146930:intron 30.0%
ATGTAGAGATGATTATTGGT+TGG - chr1_4:6715385-6715404 None:intergenic 30.0%
TGATGTGTCAATTGTTTCAA+GGG + chr1_4:6715421-6715440 Msa0146930:intron 30.0%
GGTGAGGTATAAACATATTT+AGG - chr1_4:6715615-6715634 None:intergenic 30.0%
AGTGGAATAACAAAATCTGA+AGG - chr1_4:6715708-6715727 None:intergenic 30.0%
!!! TTCAGATTTTGTTATTCCAC+TGG + chr1_4:6715707-6715726 Msa0146930:CDS 30.0%
TAAACAGTTCAGAAGAATTC+AGG - chr1_4:6715831-6715850 None:intergenic 30.0%
TCAACTATTCTTGTTAGTTG+GGG - chr1_4:6715872-6715891 None:intergenic 30.0%
CTTCTTATTCTGCAGATATA+TGG + chr1_4:6715901-6715920 Msa0146930:intron 30.0%
AGATATATGGGTACAATTGT+AGG + chr1_4:6715914-6715933 Msa0146930:intron 30.0%
TTCTAAATGGCGAAATATTC+AGG + chr1_4:6715970-6715989 Msa0146930:CDS 30.0%
ATGGTAGATCTTAATAACTG+GGG - chr1_4:6716014-6716033 None:intergenic 30.0%
ACCATTAACGACTAATTGTA+TGG + chr1_4:6716029-6716048 Msa0146930:intron 30.0%
ACCATACAATTAGTCGTTAA+TGG - chr1_4:6716033-6716052 None:intergenic 30.0%
TTGTAAATAAACAGGCTGAA+TGG + chr1_4:6716130-6716149 Msa0146930:intron 30.0%
TGTAAATAAACAGGCTGAAT+GGG + chr1_4:6716131-6716150 Msa0146930:intron 30.0%
TCAAAGAAGGAAAGATGAAA+AGG - chr1_4:6716221-6716240 None:intergenic 30.0%
!! ACAAGACATTTTGATAAGGT+GGG - chr1_4:6716305-6716324 None:intergenic 30.0%
!! TACAAGACATTTTGATAAGG+TGG - chr1_4:6716306-6716325 None:intergenic 30.0%
! ATGTTTTCTTGGTAGAGATT+TGG - chr1_4:6716449-6716468 None:intergenic 30.0%
! ACATCTTCATCATGTTTTCT+TGG - chr1_4:6716460-6716479 None:intergenic 30.0%
! GAAGATGTTTTATAAACCAC+AGG + chr1_4:6716472-6716491 Msa0146930:CDS 30.0%
TTGTTGCATGATAGGTAAAA+AGG - chr1_4:6716516-6716535 None:intergenic 30.0%
!! TGCATGTTAAAGGTGTTATT+AGG - chr1_4:6716632-6716651 None:intergenic 30.0%
CAACAATGAATGCATGTTAA+AGG - chr1_4:6716642-6716661 None:intergenic 30.0%
!!! ATGGATTTTGAGTTTGGTTT+TGG - chr1_4:6716829-6716848 None:intergenic 30.0%
CTGTTTACAATAGAAGAATC+GGG - chr1_4:6716938-6716957 None:intergenic 30.0%
GCTGTTTACAATAGAAGAAT+CGG - chr1_4:6716939-6716958 None:intergenic 30.0%
CATTGACACAAATTTCACTT+TGG - chr1_4:6717114-6717133 None:intergenic 30.0%
! AAAATGGTGTTTGAAGTAGA+AGG - chr1_4:6717175-6717194 None:intergenic 30.0%
! AACTTAAGTTCTAGTCAAGA+TGG + chr1_4:6717256-6717275 Msa0146930:CDS 30.0%
TTCTGCAGAATAATAACTCT+TGG + chr1_4:6717386-6717405 Msa0146930:CDS 30.0%
TTCGATCTTGTATATCATGA+TGG + chr1_4:6717499-6717518 Msa0146930:intron 30.0%
TCAAACATTACACGAAAGAA+GGG - chr1_4:6717758-6717777 None:intergenic 30.0%
ATCAAACATTACACGAAAGA+AGG - chr1_4:6717759-6717778 None:intergenic 30.0%
GTGATAATATTCGTATACAG+CGG - chr1_4:6717908-6717927 None:intergenic 30.0%
TTAAAGAGATGAGTGAAGAA+GGG + chr1_4:6717937-6717956 Msa0146930:CDS 30.0%
AACTACAATGACACTCATTT+GGG + chr1_4:6718054-6718073 Msa0146930:three_prime_UTR 30.0%
ATTGAATCTTCGTCTAATAG+TGG + chr1_4:6718259-6718278 Msa0146930:three_prime_UTR 30.0%
!! TTCGTCTAATAGTGGATTAA+TGG + chr1_4:6718267-6718286 Msa0146930:three_prime_UTR 30.0%
! GAGTAAACTAGTTTAGTTGT+TGG - chr1_4:6718304-6718323 None:intergenic 30.0%
!!! CTTTTTTCTTCACTTCCTAT+TGG - chr1_4:6718338-6718357 None:intergenic 30.0%
CAAAAGGGTAGTACAAAACA+AGG - chr1_4:6713293-6713312 None:intergenic 35.0%
TTCCTCTTTATTGTGTTTGG+TGG + chr1_4:6713406-6713425 Msa0146930:intron 35.0%
AGATAGTTGTGTTGTGAAAG+TGG + chr1_4:6713458-6713477 Msa0146930:five_prime_UTR 35.0%
TTGTGAAAGTGGAACAAACA+TGG + chr1_4:6713469-6713488 Msa0146930:exon 35.0%
! GAAGAAAAGGCTAAAAGTGT+TGG + chr1_4:6713500-6713519 Msa0146930:CDS 35.0%
TTGAATGGTTGAAACATGTG+TGG + chr1_4:6713956-6713975 Msa0146930:intron 35.0%
TTGAAATGCAACAGCAAAAG+TGG - chr1_4:6714135-6714154 None:intergenic 35.0%
!! GTTTTGATAATAGGCTGACA+AGG + chr1_4:6714187-6714206 Msa0146930:intron 35.0%
TTTAGTCCAAACTCAGATAC+CGG - chr1_4:6714382-6714401 None:intergenic 35.0%
! GTTTTGCAGAAAAACTCAGT+TGG - chr1_4:6714418-6714437 None:intergenic 35.0%
TAAGGCTATATAGCACTAGT+TGG + chr1_4:6714518-6714537 Msa0146930:intron 35.0%
TCTTGTACAGCCATAAAAGA+GGG - chr1_4:6714550-6714569 None:intergenic 35.0%
TTCTTGTACAGCCATAAAAG+AGG - chr1_4:6714551-6714570 None:intergenic 35.0%
! AACAACAAGTTCTTGAGTTG+GGG - chr1_4:6714621-6714640 None:intergenic 35.0%
GAACAACAAGTTCTTGAGTT+GGG - chr1_4:6714622-6714641 None:intergenic 35.0%
ACATTTCGACATATTTACCG+AGG + chr1_4:6714665-6714684 Msa0146930:CDS 35.0%
! TAATCTAAAGTGTAGGTGCT+AGG - chr1_4:6714719-6714738 None:intergenic 35.0%
CTTTAGATTAACAGTGTGTC+CGG + chr1_4:6714729-6714748 Msa0146930:intron 35.0%
GGAATAAATGTTTGTGGTTG+TGG + chr1_4:6714902-6714921 Msa0146930:intron 35.0%
!! GCTGCAACTTTGTTATTGTT+TGG + chr1_4:6714946-6714965 Msa0146930:intron 35.0%
! GCGATTCTGTTCTTTTTATC+AGG + chr1_4:6715137-6715156 Msa0146930:CDS 35.0%
GTGATGTGTCAATTGTTTCA+AGG + chr1_4:6715420-6715439 Msa0146930:intron 35.0%
GGATTGTAGAAAATCGTGAA+TGG - chr1_4:6715584-6715603 None:intergenic 35.0%
! TCACGATTTTCTACAATCCA+AGG + chr1_4:6715585-6715604 Msa0146930:CDS 35.0%
TTCTTGAGTGTATTATTGGC+AGG + chr1_4:6715676-6715695 Msa0146930:intron 35.0%
TCTTGAGTGTATTATTGGCA+GGG + chr1_4:6715677-6715696 Msa0146930:intron 35.0%
! GATTTTCTGTATTTGACCAG+TGG - chr1_4:6715726-6715745 None:intergenic 35.0%
TCAGTGATGTTGATCCTTTA+AGG + chr1_4:6715939-6715958 Msa0146930:CDS 35.0%
! ATATTTCGCCATTTAGAACC+AGG - chr1_4:6715968-6715987 None:intergenic 35.0%
AAATGGCGAAATATTCAGGT+AGG + chr1_4:6715974-6715993 Msa0146930:intron 35.0%
CTGTGGTGATAAGCAAAATA+GGG + chr1_4:6716164-6716183 Msa0146930:CDS 35.0%
! AGCAAAATAGGGTTAGTGTT+TGG + chr1_4:6716175-6716194 Msa0146930:CDS 35.0%
! GCAAAATAGGGTTAGTGTTT+GGG + chr1_4:6716176-6716195 Msa0146930:CDS 35.0%
TTTAGGCTTGATGTCAAAGA+AGG - chr1_4:6716234-6716253 None:intergenic 35.0%
CTTTGACATCAAGCCTAAAA+CGG + chr1_4:6716235-6716254 Msa0146930:CDS 35.0%
! ATTAAAGTACCCGAAAATGG+AGG + chr1_4:6716398-6716417 Msa0146930:CDS 35.0%
GCATAATCTTGTTGCATGAT+AGG - chr1_4:6716524-6716543 None:intergenic 35.0%
ATTGTTGAAAAGTGAGCAAC+CGG + chr1_4:6716655-6716674 Msa0146930:CDS 35.0%
TGTTGCAGCTTTCAAAAGAT+GGG - chr1_4:6716757-6716776 None:intergenic 35.0%
TTGTTGCAGCTTTCAAAAGA+TGG - chr1_4:6716758-6716777 None:intergenic 35.0%
!!! CGAGTAATGGATTTTGAGTT+TGG - chr1_4:6716835-6716854 None:intergenic 35.0%
! GACATTGATGATTCTAACTG+AGG - chr1_4:6716887-6716906 None:intergenic 35.0%
TTACAATAGAAGAATCGGGT+TGG - chr1_4:6716934-6716953 None:intergenic 35.0%
! TTCAATGAACCAAGAAGTGT+GGG + chr1_4:6717036-6717055 Msa0146930:CDS 35.0%
CATAATTATCCCACACTTCT+TGG - chr1_4:6717048-6717067 None:intergenic 35.0%
TAATAGTGTCAGTACCACTA+TGG + chr1_4:6717144-6717163 Msa0146930:CDS 35.0%
ATGTTACCTTTGTGTAGGTT+CGG - chr1_4:6717432-6717451 None:intergenic 35.0%
GATGGTATTTATTGTGTCTG+TGG + chr1_4:6717517-6717536 Msa0146930:intron 35.0%
AATTGAATGCATGTTTGGAC+TGG + chr1_4:6717626-6717645 Msa0146930:CDS 35.0%
! TACGTATACTAGTTTCCATC+CGG - chr1_4:6717679-6717698 None:intergenic 35.0%
ACAATGTTGTGATCTTGTGT+AGG + chr1_4:6717865-6717884 Msa0146930:intron 35.0%
CAATGTTGTGATCTTGTGTA+GGG + chr1_4:6717866-6717885 Msa0146930:intron 35.0%
ATCTTGTGTAGGGAATTTGT+GGG + chr1_4:6717876-6717895 Msa0146930:intron 35.0%
! CTCATCTCTTTAACTTCTGA+AGG - chr1_4:6717930-6717949 None:intergenic 35.0%
GTTAAAGAGATGAGTGAAGA+AGG + chr1_4:6717936-6717955 Msa0146930:CDS 35.0%
GAACTACAATGACACTCATT+TGG + chr1_4:6718053-6718072 Msa0146930:three_prime_UTR 35.0%
AATGACACTCATTTGGGAAT+GGG + chr1_4:6718060-6718079 Msa0146930:three_prime_UTR 35.0%
GATCGGAATATTGGTAGATA+TGG + chr1_4:6718082-6718101 Msa0146930:three_prime_UTR 35.0%
! TATGGACTAAACAAACCTTC+AGG + chr1_4:6718100-6718119 Msa0146930:three_prime_UTR 35.0%
! ATGGACTAAACAAACCTTCA+GGG + chr1_4:6718101-6718120 Msa0146930:three_prime_UTR 35.0%
! GTGGATTAATGGCAAAGATT+TGG + chr1_4:6718278-6718297 Msa0146930:three_prime_UTR 35.0%
TGATGAGTGGTTTCACTCAA+AGG + chr1_4:6712988-6713007 Msa0146930:five_prime_UTR 40.0%
GCGTATCAAAGCATAATGAG+TGG - chr1_4:6713057-6713076 None:intergenic 40.0%
GTCAATACAACAAAATGGGG+TGG + chr1_4:6713336-6713355 Msa0146930:intron 40.0%
CACCACCAAACACAATAAAG+AGG - chr1_4:6713411-6713430 None:intergenic 40.0%
CATGGCTTCCTTAGAAGAAA+AGG + chr1_4:6713487-6713506 Msa0146930:exon 40.0%
!! GAAAAGGCTAAAAGTGTTGG+AGG + chr1_4:6713503-6713522 Msa0146930:CDS 40.0%
!! AAAAGTGTTGGAGGAGTTGT+TGG + chr1_4:6713512-6713531 Msa0146930:CDS 40.0%
CTTGTCTATTACTTCCCTCA+AGG + chr1_4:6713792-6713811 Msa0146930:CDS 40.0%
GTAGAAGCTGCAACCTTAAA+AGG - chr1_4:6714002-6714021 None:intergenic 40.0%
ACAACTGAGATGGAAGACTA+GGG - chr1_4:6714058-6714077 None:intergenic 40.0%
AACAACTGAGATGGAAGACT+AGG - chr1_4:6714059-6714078 None:intergenic 40.0%
ACTTGACACAACAACTGAGA+TGG - chr1_4:6714068-6714087 None:intergenic 40.0%
AGCTTACAGAATTCAGTGGT+TGG - chr1_4:6714244-6714263 None:intergenic 40.0%
! GTGCTATATAGCCTTACCAA+CGG - chr1_4:6714514-6714533 None:intergenic 40.0%
! TTGGTTGCAACCCTCTTTTA+TGG + chr1_4:6714537-6714556 Msa0146930:intron 40.0%
!! ACAACAAGTTCTTGAGTTGG+GGG - chr1_4:6714620-6714639 None:intergenic 40.0%
CGAACAACAAGTTCTTGAGT+TGG - chr1_4:6714623-6714642 None:intergenic 40.0%
TGCAGAAAATATCCTCACCT+CGG - chr1_4:6714685-6714704 None:intergenic 40.0%
CGTAAGGATCTAACATGATC+AGG - chr1_4:6715023-6715042 None:intergenic 40.0%
AAAGAGACACCTTCTCACAA+CGG + chr1_4:6715075-6715094 Msa0146930:CDS 40.0%
!! GTTTGTTTGTCGGCTCAAAA+AGG + chr1_4:6715104-6715123 Msa0146930:CDS 40.0%
ATTGCATTGCAATGTCACCA+TGG - chr1_4:6715305-6715324 None:intergenic 40.0%
ATGGTGACATTGCAATGCAA+TGG + chr1_4:6715304-6715323 Msa0146930:intron 40.0%
!! TCAGCAGAAAGTACTGATGA+TGG - chr1_4:6715506-6715525 None:intergenic 40.0%
! GTGATGTTGATCCTTTAAGG+TGG + chr1_4:6715942-6715961 Msa0146930:CDS 40.0%
GCTGTGGTGATAAGCAAAAT+AGG + chr1_4:6716163-6716182 Msa0146930:CDS 40.0%
GGAAAGATGAAAAGGCTTTC+TGG - chr1_4:6716213-6716232 None:intergenic 40.0%
CCCAAATATCCAGATTGCAA+CGG - chr1_4:6716261-6716280 None:intergenic 40.0%
CCGTTGCAATCTGGATATTT+GGG + chr1_4:6716258-6716277 Msa0146930:CDS 40.0%
TCTGTGATGCAGAAAATGAG+TGG + chr1_4:6716351-6716370 Msa0146930:intron 40.0%
CTGTGATGCAGAAAATGAGT+GGG + chr1_4:6716352-6716371 Msa0146930:intron 40.0%
TGTGATGCAGAAAATGAGTG+GGG + chr1_4:6716353-6716372 Msa0146930:intron 40.0%
! TCCATTGTTCCTCCATTTTC+GGG - chr1_4:6716410-6716429 None:intergenic 40.0%
! CTCCATTGTTCCTCCATTTT+CGG - chr1_4:6716411-6716430 None:intergenic 40.0%
GTGCTTGAAAGGTGAACTTT+CGG - chr1_4:6716599-6716618 None:intergenic 40.0%
!!! GAATTATCGGTTTTGGCGAT+AGG - chr1_4:6716692-6716711 None:intergenic 40.0%
GGGAAGTCAAACATATGATC+AGG - chr1_4:6716737-6716756 None:intergenic 40.0%
GAACTAGTATGAGCGAGTAA+TGG - chr1_4:6716848-6716867 None:intergenic 40.0%
TGGAGCATGTCAATCATTTG+AGG - chr1_4:6716914-6716933 None:intergenic 40.0%
!! TGGTTCATTGAAGGTATCGA+GGG - chr1_4:6717028-6717047 None:intergenic 40.0%
!! TTGGTTCATTGAAGGTATCG+AGG - chr1_4:6717029-6717048 None:intergenic 40.0%
CACACTTCTTGGTTCATTGA+AGG - chr1_4:6717037-6717056 None:intergenic 40.0%
CTTCAATGAACCAAGAAGTG+TGG + chr1_4:6717035-6717054 Msa0146930:CDS 40.0%
AGTAGAAGGATCAACCATAG+TGG - chr1_4:6717161-6717180 None:intergenic 40.0%
TGAGCAAAAGTCGTCGAAAA+TGG - chr1_4:6717191-6717210 None:intergenic 40.0%
! TAGCAGAAGTAATCTGAGAC+TGG - chr1_4:6717282-6717301 None:intergenic 40.0%
CAAACATGCATTCAATTGCG+CGG - chr1_4:6717623-6717642 None:intergenic 40.0%
CTGAATGACACAAAAGGTTC+CGG + chr1_4:6717657-6717676 Msa0146930:CDS 40.0%
ACATTACACGAAAGAAGGGT+AGG - chr1_4:6717754-6717773 None:intergenic 40.0%
GATCTTGTGTAGGGAATTTG+TGG + chr1_4:6717875-6717894 Msa0146930:intron 40.0%
TCTTGTGTAGGGAATTTGTG+GGG + chr1_4:6717877-6717896 Msa0146930:intron 40.0%
CAATGACACTCATTTGGGAA+TGG + chr1_4:6718059-6718078 Msa0146930:three_prime_UTR 40.0%
TGGACTAAACAAACCTTCAG+GGG + chr1_4:6718102-6718121 Msa0146930:three_prime_UTR 40.0%
ACTCTACAACCAAAGCCAAT+AGG + chr1_4:6718320-6718339 Msa0146930:three_prime_UTR 40.0%
!! TCTTCACTTCCTATTGGCTT+TGG - chr1_4:6718332-6718351 None:intergenic 40.0%
TCAGAGTGTGATGTGATGAG+TGG + chr1_4:6712975-6712994 Msa0146930:five_prime_UTR 45.0%
GAGTGGTTTCACTCAAAGGT+TGG + chr1_4:6712992-6713011 Msa0146930:intron 45.0%
GAATTATGGCATGCTTGTGC+TGG + chr1_4:6713738-6713757 Msa0146930:CDS 45.0%
CTTGAGGCAATGACACAAGA+GGG - chr1_4:6713764-6713783 None:intergenic 45.0%
ACTTGAGGCAATGACACAAG+AGG - chr1_4:6713765-6713784 None:intergenic 45.0%
! TCTTGTGTCATTGCCTCAAG+TGG + chr1_4:6713764-6713783 Msa0146930:CDS 45.0%
! CTTGTGTCATTGCCTCAAGT+GGG + chr1_4:6713765-6713784 Msa0146930:CDS 45.0%
! TTGTGTCATTGCCTCAAGTG+GGG + chr1_4:6713766-6713785 Msa0146930:CDS 45.0%
CCTGTTCACTATGTCCTTGA+GGG - chr1_4:6713809-6713828 None:intergenic 45.0%
ACCTGTTCACTATGTCCTTG+AGG - chr1_4:6713810-6713829 None:intergenic 45.0%
! AGGGTAGTTTGGAATCTGTG+AGG - chr1_4:6714039-6714058 None:intergenic 45.0%
GATGGAAGACTAGGGTAGTT+TGG - chr1_4:6714050-6714069 None:intergenic 45.0%
GTGTTTCCGGTATCTGAGTT+TGG + chr1_4:6714373-6714392 Msa0146930:CDS 45.0%
AGTGATACTAGCACACATGG+TGG + chr1_4:6714448-6714467 Msa0146930:CDS 45.0%
! TAGCACACATGGTGGCTTTT+CGG + chr1_4:6714456-6714475 Msa0146930:CDS 45.0%
! GGAAAAGCTATTTCCTCCGT+TGG + chr1_4:6714495-6714514 Msa0146930:CDS 45.0%
! AGCTATTTCCTCCGTTGGTA+AGG + chr1_4:6714500-6714519 Msa0146930:intron 45.0%
! CTATATAGCCTTACCAACGG+AGG - chr1_4:6714511-6714530 None:intergenic 45.0%
TCGACATATTTACCGAGGTG+AGG + chr1_4:6714670-6714689 Msa0146930:intron 45.0%
GTCTGACGCATATCATACAC+CGG - chr1_4:6714751-6714770 None:intergenic 45.0%
TGTATGATATGCGTCAGACC+TGG + chr1_4:6714752-6714771 Msa0146930:intron 45.0%
! AACTACGTGTGTTTGAGACC+AGG - chr1_4:6714773-6714792 None:intergenic 45.0%
!! GTTGTGAGAAGGTGTCTCTT+TGG - chr1_4:6715076-6715095 None:intergenic 45.0%
AAGAGACACCTTCTCACAAC+GGG + chr1_4:6715076-6715095 Msa0146930:CDS 45.0%
!! ACGGGTTGGAGTTTGTTTGT+CGG + chr1_4:6715094-6715113 Msa0146930:CDS 45.0%
GGCTCAAAAAGGCTTAAAGC+AGG + chr1_4:6715115-6715134 Msa0146930:CDS 45.0%
GAGAAGTCACAATTGCGAGT+TGG + chr1_4:6715446-6715465 Msa0146930:CDS 45.0%
!! CACAATTGCGAGTTGGTGTA+AGG + chr1_4:6715453-6715472 Msa0146930:CDS 45.0%
TCTGCTGATAGCATGCACAT+TGG + chr1_4:6715518-6715537 Msa0146930:CDS 45.0%
CTTTCAGCTGGCATGAGATT+TGG + chr1_4:6715762-6715781 Msa0146930:CDS 45.0%
! TGGTATGATGTTTGAGACCG+AGG + chr1_4:6715782-6715801 Msa0146930:CDS 45.0%
! GATGTTTGAGACCGAGGAAT+CGG + chr1_4:6715788-6715807 Msa0146930:CDS 45.0%
! ATGTTTGAGACCGAGGAATC+GGG + chr1_4:6715789-6715808 Msa0146930:CDS 45.0%
TTAGAACCAGGCCACCTTAA+AGG - chr1_4:6715956-6715975 None:intergenic 45.0%
!! TAAGGTGGCCTGGTTCTAAA+TGG + chr1_4:6715957-6715976 Msa0146930:CDS 45.0%
! TTTTGCTTATCACCACAGCC+TGG - chr1_4:6716162-6716181 None:intergenic 45.0%
GCCGTTGCAATCTGGATATT+TGG + chr1_4:6716257-6716276 Msa0146930:CDS 45.0%
ACCCGAAAATGGAGGAACAA+TGG + chr1_4:6716406-6716425 Msa0146930:CDS 45.0%
! CCATTGTTGTTGATCACCTG+TGG - chr1_4:6716491-6716510 None:intergenic 45.0%
CCACAGGTGATCAACAACAA+TGG + chr1_4:6716488-6716507 Msa0146930:CDS 45.0%
TCTTGCAAGGGAACTCTTGT+AGG - chr1_4:6716548-6716567 None:intergenic 45.0%
GTGGGCTTCATATCTTGCAA+GGG - chr1_4:6716560-6716579 None:intergenic 45.0%
TGTGGGCTTCATATCTTGCA+AGG - chr1_4:6716561-6716580 None:intergenic 45.0%
GGATTCTCTATTGCCTGTGT+GGG - chr1_4:6716578-6716597 None:intergenic 45.0%
GTATGCTCTCTGTGCTTGAA+AGG - chr1_4:6716610-6716629 None:intergenic 45.0%
CATTCGTCTACGTCTATCTG+AGG - chr1_4:6716968-6716987 None:intergenic 45.0%
CTCAGATAGACGTAGACGAA+TGG + chr1_4:6716966-6716985 Msa0146930:CDS 45.0%
ATCGAGGGATTCACTACTTG+AGG - chr1_4:6717013-6717032 None:intergenic 45.0%
TGCCAACCATGCAATCTTGA+GGG - chr1_4:6717237-6717256 None:intergenic 45.0%
TTGCCAACCATGCAATCTTG+AGG - chr1_4:6717238-6717257 None:intergenic 45.0%
AGAGTTGTCTCGCAGAGAAA+AGG - chr1_4:6717323-6717342 None:intergenic 45.0%
! TTTTCTCTGCGAGACAACTC+TGG + chr1_4:6717322-6717341 Msa0146930:CDS 45.0%
ACCAATCCGAACCTACACAA+AGG + chr1_4:6717423-6717442 Msa0146930:CDS 45.0%
ACCTTTGTGTAGGTTCGGAT+TGG - chr1_4:6717427-6717446 None:intergenic 45.0%
GTGCAAAAAGCAGGTTCTGT+AGG + chr1_4:6717552-6717571 Msa0146930:CDS 45.0%
CGCGCAATTGAATGCATGTT+TGG + chr1_4:6717621-6717640 Msa0146930:CDS 45.0%
! GAATGCATGTTTGGACTGGA+CGG + chr1_4:6717630-6717649 Msa0146930:CDS 45.0%
GGTCTGCTGAATGACACAAA+AGG + chr1_4:6717651-6717670 Msa0146930:CDS 45.0%
ATGACACAAAAGGTTCCGGA+TGG + chr1_4:6717661-6717680 Msa0146930:CDS 45.0%
GAGAGTGATGTTCTGCTAGT+TGG + chr1_4:6717705-6717724 Msa0146930:CDS 45.0%
TGCTAGTTGGAGATGATCCT+TGG + chr1_4:6717718-6717737 Msa0146930:CDS 45.0%
GCTAGTTGGAGATGATCCTT+GGG + chr1_4:6717719-6717738 Msa0146930:CDS 45.0%
GGGATGAAGCTTCTAAACAG+TGG + chr1_4:6717957-6717976 Msa0146930:CDS 45.0%
!! CTAAACAGTGGAGCATTGCA+AGG + chr1_4:6717969-6717988 Msa0146930:CDS 45.0%
CACTCATTTGGGAATGGGAT+CGG + chr1_4:6718065-6718084 Msa0146930:three_prime_UTR 45.0%
TGGGAATGGGATCGGAATAT+TGG + chr1_4:6718073-6718092 Msa0146930:three_prime_UTR 45.0%
GGACTAAACAAACCTTCAGG+GGG + chr1_4:6718103-6718122 Msa0146930:three_prime_UTR 45.0%
GACTAAACAAACCTTCAGGG+GGG + chr1_4:6718104-6718123 Msa0146930:three_prime_UTR 45.0%
ACTAAACAAACCTTCAGGGG+GGG + chr1_4:6718105-6718124 Msa0146930:three_prime_UTR 45.0%
! AGTGTTGGAGGAGTTGTTGG+TGG + chr1_4:6713515-6713534 Msa0146930:CDS 50.0%
! TGTGTCATTGCCTCAAGTGG+GGG + chr1_4:6713767-6713786 Msa0146930:CDS 50.0%
CCCTCAAGGACATAGTGAAC+AGG + chr1_4:6713806-6713825 Msa0146930:CDS 50.0%
GCGAGTGATACTAGCACACA+TGG + chr1_4:6714445-6714464 Msa0146930:CDS 50.0%
!! ATCGGTGTCGGTTTCATGTG+TGG + chr1_4:6714816-6714835 Msa0146930:intron 50.0%
AACTCCAACCCGTTGTGAGA+AGG - chr1_4:6715087-6715106 None:intergenic 50.0%
ATTAGCAGCAGCATGAGCTG+CGG - chr1_4:6715555-6715574 None:intergenic 50.0%
TATGGGACTCAGCTTTCAGC+TGG + chr1_4:6715750-6715769 Msa0146930:CDS 50.0%
!! GTTGATCCTTTAAGGTGGCC+TGG + chr1_4:6715947-6715966 Msa0146930:CDS 50.0%
!! CAGATTGCAACGGCCGTTTT+AGG - chr1_4:6716251-6716270 None:intergenic 50.0%
CTAAAACGGCCGTTGCAATC+TGG + chr1_4:6716249-6716268 Msa0146930:CDS 50.0%
GCAAGATATGAAGCCCACAC+AGG + chr1_4:6716562-6716581 Msa0146930:CDS 50.0%
CGGATTCTCTATTGCCTGTG+TGG - chr1_4:6716579-6716598 None:intergenic 50.0%
! GCGATAGGCAGCAACTTTTC+CGG - chr1_4:6716677-6716696 None:intergenic 50.0%
TCTAACTGAGGCTGCTGCAT+TGG - chr1_4:6716875-6716894 None:intergenic 50.0%
TCAGCACCCTCAAGATTGCA+TGG + chr1_4:6717228-6717247 Msa0146930:CDS 50.0%
CACCCTCAAGATTGCATGGT+TGG + chr1_4:6717232-6717251 Msa0146930:CDS 50.0%
GTGTGACAGGTGCAAAAAGC+AGG + chr1_4:6717543-6717562 Msa0146930:intron 50.0%
GGGTAGGAAACTTACTCCCA+AGG - chr1_4:6717738-6717757 None:intergenic 50.0%
! GTGTCATTGCCTCAAGTGGG+GGG + chr1_4:6713768-6713787 Msa0146930:CDS 55.0%
TAGACAAGACCCCCCACTTG+AGG - chr1_4:6713780-6713799 None:intergenic 55.0%
GACACCTTCTCACAACGGGT+TGG + chr1_4:6715080-6715099 Msa0146930:CDS 55.0%
TCTCTGCGAGACAACTCTGG+TGG + chr1_4:6717325-6717344 Msa0146930:CDS 55.0%
GTGTCTGTGGTCTGTGTGAC+AGG + chr1_4:6717530-6717549 Msa0146930:intron 55.0%
AATGACTCATCCCCCCCTGA+AGG - chr1_4:6718118-6718137 None:intergenic 55.0%
TTCGGTTCCACGCAGAGCTG+CGG + chr1_4:6714474-6714493 Msa0146930:CDS 60.0%
! AGCTTTTCCGCAGCTCTGCG+TGG - chr1_4:6714484-6714503 None:intergenic 60.0%
CCTGCGCTTACCCGATTCCT+CGG - chr1_4:6715802-6715821 None:intergenic 60.0%
CAGGCTGAATGGGATGAGCC+AGG + chr1_4:6716141-6716160 Msa0146930:intron 60.0%
GAATGGGATGAGCCAGGCTG+TGG + chr1_4:6716147-6716166 Msa0146930:CDS 60.0%
CCGAGGAATCGGGTAAGCGC+AGG + chr1_4:6715799-6715818 Msa0146930:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6712869 6718357 6712869 ID=Msa0146930;Name=Msa0146930
chr1_4 mRNA 6712869 6718357 6712869 ID=Msa0146930-mRNA-1;Parent=Msa0146930;Name=Msa0146930-mRNA-1;_AED=0.27;_eAED=0.27;_QI=175|1|1|1|0.92|0.86|15|353|863
chr1_4 exon 6712869 6713009 6712869 ID=Msa0146930-mRNA-1:exon:2937;Parent=Msa0146930-mRNA-1
chr1_4 exon 6713454 6713590 6713454 ID=Msa0146930-mRNA-1:exon:2938;Parent=Msa0146930-mRNA-1
chr1_4 exon 6713715 6713827 6713715 ID=Msa0146930-mRNA-1:exon:2939;Parent=Msa0146930-mRNA-1
chr1_4 exon 6714008 6714106 6714008 ID=Msa0146930-mRNA-1:exon:2940;Parent=Msa0146930-mRNA-1
chr1_4 exon 6714200 6714256 6714200 ID=Msa0146930-mRNA-1:exon:2941;Parent=Msa0146930-mRNA-1
chr1_4 exon 6714364 6714516 6714364 ID=Msa0146930-mRNA-1:exon:2942;Parent=Msa0146930-mRNA-1
chr1_4 exon 6714602 6714686 6714602 ID=Msa0146930-mRNA-1:exon:2943;Parent=Msa0146930-mRNA-1
chr1_4 exon 6715068 6715158 6715068 ID=Msa0146930-mRNA-1:exon:2944;Parent=Msa0146930-mRNA-1
chr1_4 exon 6715442 6715606 6715442 ID=Msa0146930-mRNA-1:exon:2945;Parent=Msa0146930-mRNA-1
chr1_4 exon 6715698 6715820 6715698 ID=Msa0146930-mRNA-1:exon:2946;Parent=Msa0146930-mRNA-1
chr1_4 exon 6715916 6715991 6715916 ID=Msa0146930-mRNA-1:exon:2947;Parent=Msa0146930-mRNA-1
chr1_4 exon 6716144 6716279 6716144 ID=Msa0146930-mRNA-1:exon:2948;Parent=Msa0146930-mRNA-1
chr1_4 exon 6716363 6717444 6716363 ID=Msa0146930-mRNA-1:exon:2949;Parent=Msa0146930-mRNA-1
chr1_4 exon 6717552 6717742 6717552 ID=Msa0146930-mRNA-1:exon:2950;Parent=Msa0146930-mRNA-1
chr1_4 exon 6717887 6718357 6717887 ID=Msa0146930-mRNA-1:exon:2951;Parent=Msa0146930-mRNA-1
chr1_4 five_prime_UTR 6712869 6713009 6712869 ID=Msa0146930-mRNA-1:five_prime_utr;Parent=Msa0146930-mRNA-1
chr1_4 five_prime_UTR 6713454 6713487 6713454 ID=Msa0146930-mRNA-1:five_prime_utr;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6713488 6713590 6713488 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6713715 6713827 6713715 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6714008 6714106 6714008 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6714200 6714256 6714200 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6714364 6714516 6714364 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6714602 6714686 6714602 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6715068 6715158 6715068 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6715442 6715606 6715442 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6715698 6715820 6715698 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6715916 6715991 6715916 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6716144 6716279 6716144 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6716363 6717444 6716363 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6717552 6717742 6717552 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 CDS 6717887 6718004 6717887 ID=Msa0146930-mRNA-1:cds;Parent=Msa0146930-mRNA-1
chr1_4 three_prime_UTR 6718005 6718357 6718005 ID=Msa0146930-mRNA-1:three_prime_utr;Parent=Msa0146930-mRNA-1
Gene Sequence

>Msa0146930

ATGGCTTCCTTAGAAGAAAAGGCTAAAAGTGTTGGAGGAGTTGTTGGTGGTCAAACTCTTGTTGCTGAAATGAAGTTGCTCAAAGAAATGCAAGAACATTGTGGGGTTAGAAAGACATTAAATTCAGAATTATGGCATGCTTGTGCTGGCCCTCTTGTGTCATTGCCTCAAGTGGGGGGTCTTGTCTATTACTTCCCTCAAGGACATAGTGAACAGGTTGCAGCTTCTACTAGAAGAATAGCTACCTCACAGATTCCAAACTACCCTAGTCTTCCATCTCAGTTGTTGTGTCAAGTACAAAATGTCACACTACATGCTGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAACCACTGAATTCTGAAAAAGAAGTGTTTCCGGTATCTGAGTTTGGACTAAACAAAAGTAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACTGCGAGTGATACTAGCACACATGGTGGCTTTTCGGTTCCACGCAGAGCTGCGGAAAAGCTATTTCCTCCGTTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACATGGACATTTCGACATATTTACCGAGGTCAGCCAAAGAGACACCTTCTCACAACGGGTTGGAGTTTGTTTGTCGGCTCAAAAAGGCTTAAAGCAGGCGATTCTGTTCTTTTTATCAGGGACGAGAAGTCACAATTGCGAGTTGGTGTAAGGCGTGCTAATCGTCAACAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCCGCAGCTCATGCTGCTGCTAATCGAAGTCCATTCACGATTTTCTACAATCCAAGGGCATGTCCTTCAGATTTTGTTATTCCACTGGTCAAATACAGAAAATCTGTTTATGGGACTCAGCTTTCAGCTGGCATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAGCGCAGATATATGGGTACAATTGTAGGTATCAGTGATGTTGATCCTTTAAGGTGGCCTGGTTCTAAATGGCGAAATATTCAGGCTGAATGGGATGAGCCAGGCTGTGGTGATAAGCAAAATAGGGTTAGTGTTTGGGAGATCGAGACTCCAGAAAGCCTTTTCATCTTTCCTTCTTTGACATCAAGCCTAAAACGGCCGTTGCAATCTGGATATTTGGAAAATGAGTGGGGAACTTTGATACGAAGACCCTTTATTAAAGTACCCGAAAATGGAGGAACAATGGAGCTCTCAAACTCAATGCCAAATCTCTACCAAGAAAACATGATGAAGATGTTTTATAAACCACAGGTGATCAACAACAATGGAGCCTTTTTACCTATCATGCAACAAGATTATGCTCCTACAAGAGTTCCCTTGCAAGATATGAAGCCCACACAGGCAATAGAGAATCCGAAAGTTCACCTTTCAAGCACAGAGAGCATACCTAATAACACCTTTAACATGCATTCATTGTTGAAAAGTGAGCAACCGGAAAAGTTGCTGCCTATCGCCAAAACCGATAATTCAAAATTAGAATCTGAGGTGTTACCTGATCATATGTTTGACTTCCCATCTTTTGAAAGCTGCAACAACATTGAAAAAGTTAATACGGCAAACCAACTAACATATTATAATCAAAACCAAAACCAAACTCAAAATCCATTACTCGCTCATACTAGTTCATCGCCAATGCAGCAGCCTCAGTTAGAATCATCAATGTCACATCCTCAAATGATTGACATGCTCCAACCCGATTCTTCTATTGTAAACAGCATGATTCCTCAGATAGACGTAGACGAATGGATGATGTATTCTTCTTGTCAGCCTCAAGTAGTGAATCCCTCGATACCTTCAATGAACCAAGAAGTGTGGGATAATTATGTCAAGAATTTTAACTTGAGGGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTTGATGCTAGTAATAGTGTCAGTACCACTATGGTTGATCCTTCTACTTCAAACACCATTTTCGACGACTTTTGCTCAATGAAAGATAAAGATTTTCAGCACCCTCAAGATTGCATGGTTGGCAACTTAAGTTCTAGTCAAGATGGCCAGTCTCAGATTACTTCTGCTAGTCTAACTGAGTCGCACGCCTTTTCTCTGCGAGACAACTCTGGTGGTACTTCTTCAAGCCATGTTGATTTTGATGAAAGTAGTTTTCTGCAGAATAATAACTCTTGGAAGCAAGTAGCTGCACCAATCCGAACCTACACAAAGGTGCAAAAAGCAGGTTCTGTAGGAAGATCAATTGATGTGACTACTTTCAAGAACTATGAAGAGTTGATCCGCGCAATTGAATGCATGTTTGGACTGGACGGTCTGCTGAATGACACAAAAGGTTCCGGATGGAAACTAGTATACGTAGATTATGAGAGTGATGTTCTGCTAGTTGGAGATGATCCTTGGGAGGAATTTGTGGGGTGTGTCCGCTGTATACGAATATTATCACCTTCAGAAGTTAAAGAGATGAGTGAAGAAGGGATGAAGCTTCTAAACAGTGGAGCATTGCAAGGAATCAATGTGTGA
Protein sequence

>Msa0146930

MASLEEKAKSVGGVVGGQTLVAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRIATSQIPNYPSLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPVSEFGLNKSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLRVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLVKYRKSVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQAEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGYLENEWGTLIRRPFIKVPENGGTMELSNSMPNLYQENMMKMFYKPQVINNNGAFLPIMQQDYAPTRVPLQDMKPTQAIENPKVHLSSTESIPNNTFNMHSLLKSEQPEKLLPIAKTDNSKLESEVLPDHMFDFPSFESCNNIEKVNTANQLTYYNQNQNQTQNPLLAHTSSSPMQQPQLESSMSHPQMIDMLQPDSSIVNSMIPQIDVDEWMMYSSCQPQVVNPSIPSMNQEVWDNYVKNFNLRDLSAESNNQSEICVNVDASNSVSTTMVDPSTSNTIFDDFCSMKDKDFQHPQDCMVGNLSSSQDGQSQITSASLTESHAFSLRDNSGGTSSSHVDFDESSFLQNNNSWKQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKEMSEEGMKLLNSGALQGINV*