AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1055280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1055280 MtrunA17_Chr7g0226451 89.577 355 16 6 1 344 1 345 0.0 521
Msa1055280 MtrunA17_Chr5g0431351 38.843 121 41 3 224 344 123 210 2.03e-16 77.4
Msa1055280 MtrunA17_Chr4g0071811 38.261 115 42 3 230 344 293 378 8.16e-15 75.1
Msa1055280 MtrunA17_Chr8g0390971 35.404 161 54 7 192 344 276 394 4.26e-14 73.2
Msa1055280 MtrunA17_Chr1g0209861 38.281 128 46 5 225 344 316 418 4.32e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1055280 AT5G14370.1 36.740 362 179 15 1 344 1 330 1.69e-41 149
Msa1055280 AT5G57180.1 42.149 121 35 3 227 347 337 422 5.49e-19 88.2
Msa1055280 AT5G57180.2 42.373 118 33 3 227 344 337 419 3.74e-18 85.9
Msa1055280 AT4G25990.3 40.336 119 38 2 227 345 293 378 9.76e-17 81.3
Msa1055280 AT4G25990.2 40.000 125 38 3 227 347 293 384 1.48e-16 80.9
Msa1055280 AT4G25990.1 40.678 118 37 2 227 344 293 377 1.57e-16 80.9
Msa1055280 AT1G73870.1 40.310 129 46 5 224 344 276 381 4.47e-16 79.3
Msa1055280 AT1G07050.2 79.487 39 8 0 307 345 150 188 1.58e-13 69.3
Msa1055280 AT1G25440.1 37.500 120 60 3 225 344 293 397 1.73e-13 71.6
Msa1055280 AT1G07050.1 81.579 38 7 0 307 344 150 187 1.89e-13 68.9
Msa1055280 AT1G68520.1 35.537 121 63 4 224 344 288 393 3.12e-12 67.8

Find 80 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTATTTGTACAGGTATTA+TGG 0.141690 7_2:-29169344 Msa1055280:intron
CTCTGCCACCCTTCTTTGTT+AGG 0.206880 7_2:+29168488 None:intergenic
GTAGAGTTTCTCGGAGTTAC+AGG 0.248195 7_2:+29168540 None:intergenic
GGTTATGGGTGTGATGTTAA+TGG 0.287554 7_2:-29169318 Msa1055280:CDS
TTGCTAGCTCCAACACCTTC+AGG 0.321383 7_2:+29169279 None:intergenic
GGTATTTGTACAGGTATTAT+GGG 0.322694 7_2:-29169343 Msa1055280:intron
TTGAATGCTTGGTCTGATAA+AGG 0.338505 7_2:-29170586 Msa1055280:CDS
CAGGTATTATGGGATGGTTA+TGG 0.341791 7_2:-29169333 Msa1055280:CDS
AATGGAAGAAAGTAGAATAA+TGG 0.347377 7_2:+29171403 None:intergenic
GCTTGAAACTTGAAAGAAAC+TGG 0.349669 7_2:-29171349 Msa1055280:five_prime_UTR
AGGTATTATGGGATGGTTAT+GGG 0.355741 7_2:-29169332 Msa1055280:CDS
TGAAGAGAGTGAAGAGAGAT+GGG 0.373318 7_2:-29170737 Msa1055280:CDS
AAAGGTTCTCTTTATGTTGA+TGG 0.373469 7_2:-29170568 Msa1055280:CDS
ACCTATGGTTGACTGGTTGC+TGG 0.376351 7_2:+29168464 None:intergenic
ACTGTTCCTGATTTGTTCAA+TGG 0.380895 7_2:-29170526 Msa1055280:CDS
TTCTTCGTGCATGTCGTGTT+CGG 0.387187 7_2:+29170951 None:intergenic
CACCCTTCTTTGTTAGGGTG+TGG 0.406793 7_2:+29168494 None:intergenic
TGTGAAGGTGAAGGAAGAAA+TGG 0.408295 7_2:-29169250 Msa1055280:CDS
TCTGCCACCCTTCTTTGTTA+GGG 0.413375 7_2:+29168489 None:intergenic
GACGGTGGAGCAACGCTAAA+CGG 0.415141 7_2:-29170901 Msa1055280:CDS
ATGAAGAGAGTGAAGAGAGA+TGG 0.416748 7_2:-29170738 Msa1055280:CDS
ATTGAACCATTGAACAAATC+AGG 0.418495 7_2:+29170520 None:intergenic
GAAGAAATGGGTTGGAAGCT+TGG 0.419659 7_2:-29169237 Msa1055280:CDS
AAGAAATGGGTTGGAAGCTT+GGG 0.434227 7_2:-29169236 Msa1055280:CDS
TTTCAGATAGTAGAGTTTCT+CGG 0.448165 7_2:+29168531 None:intergenic
GGAAAGCAATGAGGAGGAAG+AGG 0.454954 7_2:-29170768 Msa1055280:CDS
GTTATGGGTGTGATGTTAAT+GGG 0.457104 7_2:-29169317 Msa1055280:CDS
AAACGTAGACTAAGATACTT+TGG 0.462956 7_2:+29171108 None:intergenic
AGGTGTCCGGTGATGGATCA+AGG 0.465230 7_2:-29170799 Msa1055280:CDS
AGAGACGAAGAAGGAAATGA+TGG 0.504022 7_2:-29170692 Msa1055280:CDS
ATTAGTAAAATTACATTGGG+AGG 0.505856 7_2:+29170496 None:intergenic
AGTGATGAGGTGTCCGGTGA+TGG 0.506901 7_2:-29170806 Msa1055280:CDS
CCGATCTACCTATGGTTGAC+TGG 0.507193 7_2:+29168457 None:intergenic
AGTTGTTGAAGAGACGAAGA+AGG 0.513266 7_2:-29170701 Msa1055280:CDS
GATGACGACGACGGAGGAAG+AGG 0.514002 7_2:-29170842 Msa1055280:CDS
TGATGATGAGCAAGCAGATT+CGG 0.518577 7_2:+29170988 None:intergenic
AGAAAGTAGAATAATGGAGT+GGG 0.519478 7_2:+29171409 None:intergenic
TTAGTAAAATTACATTGGGA+GGG 0.521925 7_2:+29170497 None:intergenic
GAAGTTAATAGTACTCGTGT+TGG 0.523559 7_2:-29170667 Msa1055280:CDS
ATGCCACACCCTAACAAAGA+AGG 0.529015 7_2:-29168497 Msa1055280:CDS
ATGATGGGATATTGAATGCT+TGG 0.532795 7_2:-29170597 Msa1055280:CDS
TGTTGAGATACAAAGAGAAG+AGG 0.545019 7_2:-29169197 Msa1055280:CDS
TCAACTTGCGAACTTCATAA+CGG 0.545911 7_2:+29169148 None:intergenic
TTTGTACAGGTATTATGGGA+TGG 0.546223 7_2:-29169339 Msa1055280:intron
AAGAAAGTAGAATAATGGAG+TGG 0.548031 7_2:+29171408 None:intergenic
TTATGTTGATGGTTGTGATG+AGG 0.548680 7_2:-29170557 Msa1055280:CDS
TCCGGTGATGGATCAAGGGT+TGG 0.551320 7_2:-29170794 Msa1055280:CDS
GAGGAAGAGGAAGATGAAGA+AGG 0.555436 7_2:+29171171 None:intergenic
TGGAAAGTTCCTGAAGGTGT+TGG 0.558300 7_2:-29169288 Msa1055280:CDS
GTTTGAAGCTTGATCATGAT+GGG 0.563359 7_2:-29170612 Msa1055280:CDS
GCCAGCAACCAGTCAACCAT+AGG 0.564571 7_2:-29168465 Msa1055280:CDS
AGTTTGAAGCTTGATCATGA+TGG 0.572212 7_2:-29170613 Msa1055280:CDS
GACGAAGAAGGAAATGATGG+AGG 0.575278 7_2:-29170689 Msa1055280:CDS
GTGAAGGTGAAGGAAGAAAT+GGG 0.575413 7_2:-29169249 Msa1055280:CDS
CTAACAAAGAAGGGTGGCAG+AGG 0.579542 7_2:-29168487 Msa1055280:CDS
ACCAACCCTTGATCCATCAC+CGG 0.584061 7_2:+29170793 None:intergenic
CAATAACAATGTGAAGGTGA+AGG 0.584908 7_2:-29169259 Msa1055280:CDS
TGGTGAGGAAAGCAATGAGG+AGG 0.586113 7_2:-29170774 Msa1055280:CDS
AGGTGAAGGAAGAAATGGGT+TGG 0.586587 7_2:-29169245 Msa1055280:CDS
GTTACGGGCCGATCTACCTA+TGG 0.587617 7_2:+29168449 None:intergenic
AGAAATAGTACCTTCATCCT+CGG 0.597938 7_2:+29169111 None:intergenic
GAAAGTAGAATAATGGAGTG+GGG 0.599742 7_2:+29171410 None:intergenic
GACGACGACGGAGGAAGAGG+AGG 0.602906 7_2:-29170839 Msa1055280:CDS
ATTGTCAGTGATGAGGTGTC+CGG 0.606087 7_2:-29170812 Msa1055280:CDS
TGCCACACCCTAACAAAGAA+GGG 0.609411 7_2:-29168496 Msa1055280:CDS
TGATGGATCAAGGGTTGGTG+AGG 0.611319 7_2:-29170789 Msa1055280:CDS
AACAAATCAGGAACAGTCTG+AGG 0.616030 7_2:+29170532 None:intergenic
TTGGAAGCTTGGGCAGAGAG+AGG 0.619401 7_2:-29169226 Msa1055280:CDS
GCGTTACTCTTCACATCAGA+CGG 0.631227 7_2:-29170919 Msa1055280:CDS
AGCTAGCAATAACAATGTGA+AGG 0.640407 7_2:-29169265 Msa1055280:CDS
AGGAGTCATTGTCAGTGATG+AGG 0.647629 7_2:-29170819 Msa1055280:CDS
AACACATGGAAAGTTCCTGA+AGG 0.666366 7_2:-29169294 Msa1055280:CDS
GTGATGTTAATGGGAACACA+TGG 0.674682 7_2:-29169308 Msa1055280:CDS
GGTTGGTGAGGAAAGCAATG+AGG 0.677201 7_2:-29170777 Msa1055280:CDS
GGTGTCCGGTGATGGATCAA+GGG 0.677873 7_2:-29170798 Msa1055280:CDS
AGCGGTGATGACGACGACGG+AGG 0.681137 7_2:-29170848 Msa1055280:CDS
CACACCCTAACAAAGAAGGG+TGG 0.723841 7_2:-29168493 Msa1055280:CDS
TTACTCTTCACATCAGACGG+TGG 0.732316 7_2:-29170916 Msa1055280:CDS
AACAGCGGTGATGACGACGA+CGG 0.737423 7_2:-29170851 Msa1055280:CDS
TGAATCGACTACGTTAACAG+CGG 0.787904 7_2:-29170866 Msa1055280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAGTAAAATTACATT+GGG + chr7_2:29169399-29169418 None:intergenic 10.0%
!! AAAAATTAGTAAAATTACAT+TGG + chr7_2:29169400-29169419 None:intergenic 10.0%
!! ATCAATTTAGAAATATATTA+TGG - chr7_2:29170479-29170498 Msa1055280:intron 10.0%
!!! TTTGTTTTTGTTTTTGTTTT+TGG + chr7_2:29168637-29168656 None:intergenic 15.0%
!!! TGATGAACATATATTTTTTT+TGG + chr7_2:29168692-29168711 None:intergenic 15.0%
!!! TTTTATTATTGGTTACTTTT+TGG - chr7_2:29170053-29170072 Msa1055280:intron 15.0%
!! AAAATCAATTTAAACCATTA+TGG + chr7_2:29170328-29170347 None:intergenic 15.0%
!!! ATGGTTTAAATTGATTTTAT+AGG - chr7_2:29170330-29170349 Msa1055280:intron 15.0%
!! AAAAAATTACTTGAAAAGAA+AGG - chr7_2:29170884-29170903 Msa1055280:CDS 15.0%
!!! ATTTTTTCCAATTAATTGAG+TGG - chr7_2:29169608-29169627 Msa1055280:intron 20.0%
!! ACTTGATGCAAATTATAATT+TGG + chr7_2:29169735-29169754 None:intergenic 20.0%
!!! TCAATGATTTGTTTTTAAAC+TGG + chr7_2:29169845-29169864 None:intergenic 20.0%
!! AACCAATAATAAAAAGTTGT+CGG + chr7_2:29170047-29170066 None:intergenic 20.0%
!! TATTATATATCACAACCAAA+CGG + chr7_2:29170171-29170190 None:intergenic 20.0%
! AATGGAAGAAAGTAGAATAA+TGG + chr7_2:29168489-29168508 None:intergenic 25.0%
!!! GTTTTTGTTTTTGTTTTTGG+TGG + chr7_2:29168634-29168653 None:intergenic 25.0%
! TTAGTAAAATTACATTGGGA+GGG + chr7_2:29169395-29169414 None:intergenic 25.0%
! ATTAGTAAAATTACATTGGG+AGG + chr7_2:29169396-29169415 None:intergenic 25.0%
!! TTTCATACATATTTGATTCG+CGG - chr7_2:29169440-29169459 Msa1055280:intron 25.0%
! CACTTTAAATGTGAAGAAAT+AGG - chr7_2:29169637-29169656 Msa1055280:intron 25.0%
! ATGTGAAGAAATAGGAAATT+CGG - chr7_2:29169645-29169664 Msa1055280:intron 25.0%
!! TTTTTAATCAGTTATGAGTG+TGG - chr7_2:29169894-29169913 Msa1055280:intron 25.0%
!! ATTTCTTTTGTGCATGTTTT+TGG - chr7_2:29169991-29170010 Msa1055280:intron 25.0%
!! GAATAGTGATGATTTCATTT+TGG - chr7_2:29170019-29170038 Msa1055280:intron 25.0%
!! ATCTTACATTTAAAACACGA+TGG - chr7_2:29170097-29170116 Msa1055280:intron 25.0%
!!! TTCTTTTACCCTTATTTCAA+TGG - chr7_2:29170143-29170162 Msa1055280:intron 25.0%
! ATTATATATCACAACCAAAC+GGG + chr7_2:29170170-29170189 None:intergenic 25.0%
! ATAATAATTGTGACTCTTGT+TGG - chr7_2:29170185-29170204 Msa1055280:intron 25.0%
!! GATTTTATAGGATTGAGTTA+TGG - chr7_2:29170342-29170361 Msa1055280:intron 25.0%
! TTCAATTTATTGCATCAACT+TGG + chr7_2:29170421-29170440 None:intergenic 25.0%
!! GATACAAGAGAAAATCTTTT+AGG - chr7_2:29170447-29170466 Msa1055280:intron 25.0%
!! TTCATTTGATAGTAACAAGT+GGG + chr7_2:29170506-29170525 None:intergenic 25.0%
!!! TGTGTGTTATTTTGTTTGAA+TGG - chr7_2:29170930-29170949 Msa1055280:CDS 25.0%
!! TGCTTATATTTGAAACTCAA+GGG + chr7_2:29170968-29170987 None:intergenic 25.0%
!! TTGCTTATATTTGAAACTCA+AGG + chr7_2:29170969-29170988 None:intergenic 25.0%
! TTCTCGTTTATATTGTACAA+GGG + chr7_2:29171041-29171060 None:intergenic 25.0%
! TTTCTCGTTTATATTGTACA+AGG + chr7_2:29171042-29171061 None:intergenic 25.0%
!! CAACTTTTGAACAATTTTCT+TGG - chr7_2:29171087-29171106 Msa1055280:CDS 25.0%
! AGAAAGTAGAATAATGGAGT+GGG + chr7_2:29168483-29168502 None:intergenic 30.0%
! AAGAAAGTAGAATAATGGAG+TGG + chr7_2:29168484-29168503 None:intergenic 30.0%
! TAGCTTTTCTGATGAGAAAA+TGG + chr7_2:29168507-29168526 None:intergenic 30.0%
AAACGTAGACTAAGATACTT+TGG + chr7_2:29168784-29168803 None:intergenic 30.0%
!!! TTGTTGTTGTTGCTGTTTTT+GGG + chr7_2:29168841-29168860 None:intergenic 30.0%
AAAGGTTCTCTTTATGTTGA+TGG - chr7_2:29169321-29169340 Msa1055280:CDS 30.0%
ATTGAACCATTGAACAAATC+AGG + chr7_2:29169372-29169391 None:intergenic 30.0%
GGCTTAAATCATGAACTAAA+TGG + chr7_2:29169714-29169733 None:intergenic 30.0%
! CACCGACAACTTTTTATTAT+TGG - chr7_2:29170042-29170061 Msa1055280:intron 30.0%
!!! TTATTGGTTACTTTTTGGCA+AGG - chr7_2:29170058-29170077 Msa1055280:intron 30.0%
!!! TATTGGTTACTTTTTGGCAA+GGG - chr7_2:29170059-29170078 Msa1055280:intron 30.0%
TTATATATCACAACCAAACG+GGG + chr7_2:29170169-29170188 None:intergenic 30.0%
TTTATGTGTGACATCCATAA+TGG - chr7_2:29170311-29170330 Msa1055280:intron 30.0%
!!! ATCTCTCAATTATTTTGACG+AGG - chr7_2:29170390-29170409 Msa1055280:intron 30.0%
! ACAAGAGAAAATCTTTTAGG+TGG - chr7_2:29170450-29170469 Msa1055280:intron 30.0%
! CTTCATTTGATAGTAACAAG+TGG + chr7_2:29170507-29170526 None:intergenic 30.0%
!!! AGTGTTTTGATGAAGCTATT+TGG - chr7_2:29170525-29170544 Msa1055280:CDS 30.0%
AAGCTATTTGGTATTTGTAC+AGG - chr7_2:29170537-29170556 Msa1055280:CDS 30.0%
TGGTATTTGTACAGGTATTA+TGG - chr7_2:29170545-29170564 Msa1055280:CDS 30.0%
GGTATTTGTACAGGTATTAT+GGG - chr7_2:29170546-29170565 Msa1055280:CDS 30.0%
ACTTTCTTCTCTCTTCTTAT+TGG + chr7_2:29171176-29171195 None:intergenic 30.0%
AATACACCCAAATAAAACGA+AGG - chr7_2:29171247-29171266 Msa1055280:CDS 30.0%
TTTCAGATAGTAGAGTTTCT+CGG + chr7_2:29171361-29171380 None:intergenic 30.0%
! GAAAGTAGAATAATGGAGTG+GGG + chr7_2:29168482-29168501 None:intergenic 35.0%
GCTTGAAACTTGAAAGAAAC+TGG - chr7_2:29168540-29168559 Msa1055280:CDS 35.0%
!! TGATTTTAGTGAAGAGGAAG+AGG + chr7_2:29168734-29168753 None:intergenic 35.0%
!! TCTACGTGATTTTAGTGAAG+AGG + chr7_2:29168740-29168759 None:intergenic 35.0%
!!! GTTGTTGTTGTTGCTGTTTT+TGG + chr7_2:29168842-29168861 None:intergenic 35.0%
GAAGTTAATAGTACTCGTGT+TGG - chr7_2:29169222-29169241 Msa1055280:CDS 35.0%
!!! TTTGAAACGACGTCGTTTTT+TGG - chr7_2:29169246-29169265 Msa1055280:CDS 35.0%
!!! TTGAAACGACGTCGTTTTTT+GGG - chr7_2:29169247-29169266 Msa1055280:CDS 35.0%
! AGTTTGAAGCTTGATCATGA+TGG - chr7_2:29169276-29169295 Msa1055280:CDS 35.0%
! GTTTGAAGCTTGATCATGAT+GGG - chr7_2:29169277-29169296 Msa1055280:CDS 35.0%
! ATGATGGGATATTGAATGCT+TGG - chr7_2:29169292-29169311 Msa1055280:CDS 35.0%
TTGAATGCTTGGTCTGATAA+AGG - chr7_2:29169303-29169322 Msa1055280:CDS 35.0%
!! TTATGTTGATGGTTGTGATG+AGG - chr7_2:29169332-29169351 Msa1055280:CDS 35.0%
!! ACTGTTCCTGATTTGTTCAA+TGG - chr7_2:29169363-29169382 Msa1055280:intron 35.0%
! AGTGATTTTGCCAACTTCAA+AGG + chr7_2:29169543-29169562 None:intergenic 35.0%
GCTTGAAGTTGGCAAAATTA+TGG + chr7_2:29169572-29169591 None:intergenic 35.0%
GAACTAAATGGTAAGCTACA+AGG + chr7_2:29169702-29169721 None:intergenic 35.0%
!!! CTTTTGTGCATGTTTTTGGA+TGG - chr7_2:29169995-29170014 Msa1055280:intron 35.0%
!!! ATTGGTTACTTTTTGGCAAG+GGG - chr7_2:29170060-29170079 Msa1055280:intron 35.0%
ATGTAAGATCCTAATCAAGC+AGG + chr7_2:29170086-29170105 None:intergenic 35.0%
ATAATTGTGACTCTTGTTGG+AGG - chr7_2:29170188-29170207 Msa1055280:intron 35.0%
TTTGTACAGGTATTATGGGA+TGG - chr7_2:29170550-29170569 Msa1055280:CDS 35.0%
AGGTATTATGGGATGGTTAT+GGG - chr7_2:29170557-29170576 Msa1055280:CDS 35.0%
GTTATGGGTGTGATGTTAAT+GGG - chr7_2:29170572-29170591 Msa1055280:CDS 35.0%
AGCTAGCAATAACAATGTGA+AGG - chr7_2:29170624-29170643 Msa1055280:CDS 35.0%
CAATAACAATGTGAAGGTGA+AGG - chr7_2:29170630-29170649 Msa1055280:CDS 35.0%
TGTTGAGATACAAAGAGAAG+AGG - chr7_2:29170692-29170711 Msa1055280:CDS 35.0%
TCAACTTGCGAACTTCATAA+CGG + chr7_2:29170744-29170763 None:intergenic 35.0%
! GCAAGTTGAATGCTGAAAAA+CGG - chr7_2:29170755-29170774 Msa1055280:CDS 35.0%
AGAAATAGTACCTTCATCCT+CGG + chr7_2:29170781-29170800 None:intergenic 35.0%
ACCATGCATTTAGACATATC+TGG - chr7_2:29170810-29170829 Msa1055280:CDS 35.0%
ACCAGATATGTCTAAATGCA+TGG + chr7_2:29170814-29170833 None:intergenic 35.0%
TGTCTCAAAAGTTGTCACAA+TGG - chr7_2:29171196-29171215 Msa1055280:CDS 35.0%
!!! TGTTGTTGCTGTTTTTGGGT+TGG + chr7_2:29168837-29168856 None:intergenic 40.0%
! TGATGATGAGCAAGCAGATT+CGG + chr7_2:29168904-29168923 None:intergenic 40.0%
TGAATCGACTACGTTAACAG+CGG - chr7_2:29169023-29169042 Msa1055280:intron 40.0%
ATGAAGAGAGTGAAGAGAGA+TGG - chr7_2:29169151-29169170 Msa1055280:CDS 40.0%
TGAAGAGAGTGAAGAGAGAT+GGG - chr7_2:29169152-29169171 Msa1055280:CDS 40.0%
AGTTGTTGAAGAGACGAAGA+AGG - chr7_2:29169188-29169207 Msa1055280:CDS 40.0%
AGAGACGAAGAAGGAAATGA+TGG - chr7_2:29169197-29169216 Msa1055280:CDS 40.0%
AACAAATCAGGAACAGTCTG+AGG + chr7_2:29169360-29169379 None:intergenic 40.0%
TTGCCAACTTCAAAGCCAAT+CGG + chr7_2:29169498-29169517 None:intergenic 40.0%
! ATTTTGCCAACTTCAAGCTG+AGG - chr7_2:29169574-29169593 Msa1055280:intron 40.0%
GTGTGAGCCACTCAATTAAT+TGG + chr7_2:29169618-29169637 None:intergenic 40.0%
GAAATTCGGAGCTTGAATCT+TGG - chr7_2:29169659-29169678 Msa1055280:intron 40.0%
!! TTGTGCATGTGACTGATTTG+TGG - chr7_2:29169956-29169975 Msa1055280:intron 40.0%
AAACGGGGCCATTGAAATAA+GGG + chr7_2:29170154-29170173 None:intergenic 40.0%
GATTGAGTTATGGTGTGACA+AGG - chr7_2:29170352-29170371 Msa1055280:intron 40.0%
CAGGTATTATGGGATGGTTA+TGG - chr7_2:29170556-29170575 Msa1055280:CDS 40.0%
GGTTATGGGTGTGATGTTAA+TGG - chr7_2:29170571-29170590 Msa1055280:CDS 40.0%
GTGATGTTAATGGGAACACA+TGG - chr7_2:29170581-29170600 Msa1055280:CDS 40.0%
AACACATGGAAAGTTCCTGA+AGG - chr7_2:29170595-29170614 Msa1055280:CDS 40.0%
TGTGAAGGTGAAGGAAGAAA+TGG - chr7_2:29170639-29170658 Msa1055280:CDS 40.0%
GTGAAGGTGAAGGAAGAAAT+GGG - chr7_2:29170640-29170659 Msa1055280:CDS 40.0%
!! AAGAAATGGGTTGGAAGCTT+GGG - chr7_2:29170653-29170672 Msa1055280:CDS 40.0%
!!! GTCCTGCCTTCGTTTTATTT+GGG + chr7_2:29171256-29171275 None:intergenic 40.0%
!! CTTCTTGGTGTTTGCTTGTT+TGG + chr7_2:29171278-29171297 None:intergenic 40.0%
CAAACAAGCAAACACCAAGA+AGG - chr7_2:29171276-29171295 Msa1055280:CDS 40.0%
ATTGAGTGTTCTTGCCTTCT+TGG + chr7_2:29171293-29171312 None:intergenic 40.0%
GAGGAAGAGGAAGATGAAGA+AGG + chr7_2:29168721-29168740 None:intergenic 45.0%
TTCTTCGTGCATGTCGTGTT+CGG + chr7_2:29168941-29168960 None:intergenic 45.0%
GCGTTACTCTTCACATCAGA+CGG - chr7_2:29168970-29168989 Msa1055280:intron 45.0%
TTACTCTTCACATCAGACGG+TGG - chr7_2:29168973-29168992 Msa1055280:intron 45.0%
AGGAGTCATTGTCAGTGATG+AGG - chr7_2:29169070-29169089 Msa1055280:intron 45.0%
! ATTGTCAGTGATGAGGTGTC+CGG - chr7_2:29169077-29169096 Msa1055280:intron 45.0%
GACGAAGAAGGAAATGATGG+AGG - chr7_2:29169200-29169219 Msa1055280:CDS 45.0%
CAGTGTTATCGTGATCCGAT+TGG - chr7_2:29169480-29169499 Msa1055280:intron 45.0%
!! GATCCGATTGGCTTTGAAGT+TGG - chr7_2:29169492-29169511 Msa1055280:intron 45.0%
!! GCGATGATTGCCTTTGAAGT+TGG - chr7_2:29169530-29169549 Msa1055280:intron 45.0%
TCATCTCCTCAGCTTGAAGT+TGG + chr7_2:29169583-29169602 None:intergenic 45.0%
CAAACGGGGCCATTGAAATA+AGG + chr7_2:29170155-29170174 None:intergenic 45.0%
CTTATTTCAATGGCCCCGTT+TGG - chr7_2:29170153-29170172 Msa1055280:intron 45.0%
! TGGAAAGTTCCTGAAGGTGT+TGG - chr7_2:29170601-29170620 Msa1055280:CDS 45.0%
AGGTGAAGGAAGAAATGGGT+TGG - chr7_2:29170644-29170663 Msa1055280:CDS 45.0%
!! GAAGAAATGGGTTGGAAGCT+TGG - chr7_2:29170652-29170671 Msa1055280:CDS 45.0%
CACCCAAATAAAACGAAGGC+AGG - chr7_2:29171251-29171270 Msa1055280:CDS 45.0%
!! GGTCCTGCCTTCGTTTTATT+TGG + chr7_2:29171257-29171276 None:intergenic 45.0%
GTTACAGGTCTGAGGATTTG+TGG + chr7_2:29171337-29171356 None:intergenic 45.0%
GTAGAGTTTCTCGGAGTTAC+AGG + chr7_2:29171352-29171371 None:intergenic 45.0%
ATGCCACACCCTAACAAAGA+AGG - chr7_2:29171392-29171411 Msa1055280:five_prime_UTR 45.0%
TGCCACACCCTAACAAAGAA+GGG - chr7_2:29171393-29171412 Msa1055280:five_prime_UTR 45.0%
TCTGCCACCCTTCTTTGTTA+GGG + chr7_2:29171403-29171422 None:intergenic 45.0%
ACCAACCCTTGATCCATCAC+CGG + chr7_2:29169099-29169118 None:intergenic 50.0%
!! TGATGGATCAAGGGTTGGTG+AGG - chr7_2:29169100-29169119 Msa1055280:intron 50.0%
!! GGTTGGTGAGGAAAGCAATG+AGG - chr7_2:29169112-29169131 Msa1055280:intron 50.0%
TGGTGAGGAAAGCAATGAGG+AGG - chr7_2:29169115-29169134 Msa1055280:intron 50.0%
GGAAAGCAATGAGGAGGAAG+AGG - chr7_2:29169121-29169140 Msa1055280:intron 50.0%
TTGCTAGCTCCAACACCTTC+AGG + chr7_2:29170613-29170632 None:intergenic 50.0%
TGAATGCTGAAAAACGGCCG+AGG - chr7_2:29170761-29170780 Msa1055280:CDS 50.0%
TGAAAAACGGCCGAGGATGA+AGG - chr7_2:29170768-29170787 Msa1055280:CDS 50.0%
TTCTCGGAGTTACAGGTCTG+AGG + chr7_2:29171345-29171364 None:intergenic 50.0%
CACCCTTCTTTGTTAGGGTG+TGG + chr7_2:29171398-29171417 None:intergenic 50.0%
CACACCCTAACAAAGAAGGG+TGG - chr7_2:29171396-29171415 Msa1055280:five_prime_UTR 50.0%
CTCTGCCACCCTTCTTTGTT+AGG + chr7_2:29171404-29171423 None:intergenic 50.0%
CTAACAAAGAAGGGTGGCAG+AGG - chr7_2:29171402-29171421 Msa1055280:five_prime_UTR 50.0%
! ACCTATGGTTGACTGGTTGC+TGG + chr7_2:29171428-29171447 None:intergenic 50.0%
GACGGTGGAGCAACGCTAAA+CGG - chr7_2:29168988-29169007 Msa1055280:intron 55.0%
! AACAGCGGTGATGACGACGA+CGG - chr7_2:29169038-29169057 Msa1055280:intron 55.0%
! AGTGATGAGGTGTCCGGTGA+TGG - chr7_2:29169083-29169102 Msa1055280:intron 55.0%
!! AGGTGTCCGGTGATGGATCA+AGG - chr7_2:29169090-29169109 Msa1055280:intron 55.0%
!! GGTGTCCGGTGATGGATCAA+GGG - chr7_2:29169091-29169110 Msa1055280:intron 55.0%
!! TCCGGTGATGGATCAAGGGT+TGG - chr7_2:29169095-29169114 Msa1055280:intron 55.0%
TTGGAAGCTTGGGCAGAGAG+AGG - chr7_2:29170663-29170682 Msa1055280:CDS 55.0%
GCCAGCAACCAGTCAACCAT+AGG - chr7_2:29171424-29171443 Msa1055280:five_prime_UTR 55.0%
GATGACGACGACGGAGGAAG+AGG - chr7_2:29169047-29169066 Msa1055280:intron 60.0%
GGCAAGGGGCCTGCTTGATT+AGG - chr7_2:29170074-29170093 Msa1055280:intron 60.0%
! AGCGGTGATGACGACGACGG+AGG - chr7_2:29169041-29169060 Msa1055280:intron 65.0%
GACGACGACGGAGGAAGAGG+AGG - chr7_2:29169050-29169069 Msa1055280:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 29168462 29171449 29168462 ID=Msa1055280;Name=Msa1055280
chr7_2 mRNA 29168462 29171449 29168462 ID=Msa1055280-mRNA-1;Parent=Msa1055280;Name=Msa1055280-mRNA-1;_AED=0.16;_eAED=0.16;_QI=139|0.5|0.66|0.66|1|1|3|0|377
chr7_2 exon 29168462 29168563 29168462 ID=Msa1055280-mRNA-1:exon:6034;Parent=Msa1055280-mRNA-1
chr7_2 exon 29169122 29169352 29169122 ID=Msa1055280-mRNA-1:exon:6033;Parent=Msa1055280-mRNA-1
chr7_2 exon 29170510 29171449 29170510 ID=Msa1055280-mRNA-1:exon:6032;Parent=Msa1055280-mRNA-1
chr7_2 five_prime_UTR 29171311 29171449 29171311 ID=Msa1055280-mRNA-1:five_prime_utr;Parent=Msa1055280-mRNA-1
chr7_2 CDS 29170510 29171310 29170510 ID=Msa1055280-mRNA-1:cds;Parent=Msa1055280-mRNA-1
chr7_2 CDS 29169122 29169352 29169122 ID=Msa1055280-mRNA-1:cds;Parent=Msa1055280-mRNA-1
chr7_2 CDS 29168462 29168563 29168462 ID=Msa1055280-mRNA-1:cds;Parent=Msa1055280-mRNA-1
Gene Sequence

>Msa1055280

ATGTGCAACAAGAATAGTAGTACTCTTTCACCACCAAAAACAAAAACAAAAACAAAATCTATTACTATGAAGAAGAGAAAGAGACAAACCAAAAAAAATATATGTTCATCAATTTCACCTTCTTCATCTTCCTCTTCCTCTTCACTAAAATCACGTAGAAACAAAACAAAAAGAAAAAAACCAAAGTATCTTAGTCTACGTTTACAGCTCTCAAAAACAGAAAAAAACAAAGACCAACCCAAAAACAGCAACAACAACAACAAAAAAACACAAAAACAAGAACAACAAGAACAACAACAACCGAATCTGCTTGCTCATCATCATCATCATCACGATACCGAACACGACATGCACGAAGAAAACAATGTAGCGTTACTCTTCACATCAGACGGTGGAGCAACGCTAAACGGTCTTCTAGAAAATGAATCGACTACGTTAACAGCGGTGATGACGACGACGGAGGAAGAGGAGGAGTCATTGTCAGTGATGAGGTGTCCGGTGATGGATCAAGGGTTGGTGAGGAAAGCAATGAGGAGGAAGAGGAATGATCATGAAGAGAGTGAAGAGAGATGGGTGAGTTATTCAGAAGTTGTTGAAGAGACGAAGAAGGAAATGATGGAGGAAGTTAATAGTACTCGTGTTGGATTTGAAACGACGTCGTTTTTTGGGTCTTTGAGTTTGAAGCTTGATCATGATGGGATATTGAATGCTTGGTCTGATAAAGGTTCTCTTTATGTTGATGGTTGTGATGAGGCTCCTCAGACTGTTCCTGATTTGTTCAATGGTTCAATCCCTCCCAATGTATTATGGGATGGTTATGGGTGTGATGTTAATGGGAACACATGGAAAGTTCCTGAAGGTGTTGGAGCTAGCAATAACAATGTGAAGGTGAAGGAAGAAATGGGTTGGAAGCTTGGGCAGAGAGAGGCAAGTTTGTTGAGATACAAAGAGAAGAGGCAAAGCAGACTCTTTGCTAAGAGAATCCGTTATGAAGTTCGCAAGTTGAATGCTGAAAAACGGCCGAGGATGAAGACCTGTAACTCCGAGAAACTCTACTATCTGAAAAGCGAGAGAAAATGCCACACCCTAACAAAGAAGGGTGGCAGAGGCCAGCAACCAGTCAACCATAGGTAG

Protein sequence

>Msa1055280

MCNKNSSTLSPPKTKTKTKSITMKKRKRQTKKNICSSISPSSSSSSSSLKSRRNKTKRKKPKYLSLRLQLSKTEKNKDQPKNSNNNNKKTQKQEQQEQQQPNLLAHHHHHHDTEHDMHEENNVALLFTSDGGATLNGLLENESTTLTAVMTTTEEEEESLSVMRCPVMDQGLVRKAMRRKRNDHEESEERWVSYSEVVEETKKEMMEEVNSTRVGFETTSFFGSLSLKLDHDGILNAWSDKGSLYVDGCDEAPQTVPDLFNGSIPPNVLWDGYGCDVNGNTWKVPEGVGASNNNVKVKEEMGWKLGQREASLLRYKEKRQSRLFAKRIRYEVRKLNAEKRPRMKTCNSEKLYYLKSERKCHTLTKKGGRGQQPVNHR*