Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547490 | XP_003606464.1 | 97.872 | 94 | 2 | 0 | 1 | 94 | 1 | 94 | 6.89e-61 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547490 | G7JQH1 | 97.872 | 94 | 2 | 0 | 1 | 94 | 1 | 94 | 3.29e-61 | 190 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0547490 | 0.838163 | 3.384538e-57 | -8.615850e-47 |
| Msa0110970 | Msa0547490 | 0.820613 | 6.251801e-53 | -8.615850e-47 |
| Msa0140780 | Msa0547490 | 0.822226 | 2.653093e-53 | -8.615850e-47 |
| Msa0157290 | Msa0547490 | 0.838588 | 2.630432e-57 | -8.615850e-47 |
| Msa0169860 | Msa0547490 | 0.811311 | 7.459909e-51 | -8.615850e-47 |
| Msa0200260 | Msa0547490 | 0.816320 | 5.877598e-52 | -8.615850e-47 |
| Msa0221290 | Msa0547490 | 0.814478 | 1.509602e-51 | -8.615850e-47 |
| Msa0373930 | Msa0547490 | 0.817513 | 3.171987e-52 | -8.615850e-47 |
| Msa0392420 | Msa0547490 | 0.801955 | 7.052223e-49 | -8.615850e-47 |
| Msa0392490 | Msa0547490 | 0.801716 | 7.897975e-49 | -8.615850e-47 |
| Msa0428670 | Msa0547490 | 0.811159 | 8.050095e-51 | -8.615850e-47 |
| Msa0465910 | Msa0547490 | 0.802172 | 6.364526e-49 | -8.615850e-47 |
| Msa0465950 | Msa0547490 | 0.819989 | 8.694287e-53 | -8.615850e-47 |
| Msa0466060 | Msa0547490 | 0.809832 | 1.557161e-50 | -8.615850e-47 |
| Msa0467680 | Msa0547490 | 0.800181 | 1.625771e-48 | -8.615850e-47 |
| Msa0480980 | Msa0547490 | 0.821331 | 4.274009e-53 | -8.615850e-47 |
| Msa0243100 | Msa0547490 | 0.830118 | 3.515565e-55 | -8.615850e-47 |
| Msa0287650 | Msa0547490 | 0.831093 | 2.029505e-55 | -8.615850e-47 |
| Msa0487570 | Msa0547490 | 0.806134 | 9.534997e-50 | -8.615850e-47 |
| Msa0487630 | Msa0547490 | 0.811751 | 5.987094e-51 | -8.615850e-47 |
| Msa0500360 | Msa0547490 | 0.808192 | 3.494693e-50 | -8.615850e-47 |
| Msa0514030 | Msa0547490 | 0.812501 | 4.107136e-51 | -8.615850e-47 |
| Msa0517340 | Msa0547490 | 0.807079 | 6.021463e-50 | -8.615850e-47 |
| Msa0523460 | Msa0547490 | 0.818905 | 1.536085e-52 | -8.615850e-47 |
| Msa0547490 | Msa0581760 | 0.829887 | 4.003337e-55 | -8.615850e-47 |
| Msa0547490 | Msa0597330 | 0.809652 | 1.702156e-50 | -8.615850e-47 |
| Msa0547490 | Msa0602240 | 0.874482 | 6.525893e-68 | -8.615850e-47 |
| Msa0547490 | Msa0602250 | 0.881124 | 3.113876e-70 | -8.615850e-47 |
| Msa0547490 | Msa0643470 | 0.915955 | 3.179461e-85 | -8.615850e-47 |
| Msa0547490 | Msa0661190 | -0.800555 | 1.364184e-48 | -8.615850e-47 |
| Msa0547490 | Msa0682620 | 0.913857 | 3.780308e-84 | -8.615850e-47 |
| Msa0547490 | Msa0688770 | 0.912572 | 1.671031e-83 | -8.615850e-47 |
| Msa0547490 | Msa0691380 | 0.801361 | 9.338495e-49 | -8.615850e-47 |
| Msa0547490 | Msa0812990 | 0.814632 | 1.395364e-51 | -8.615850e-47 |
| Msa0547490 | Msa0824680 | 0.802513 | 5.413129e-49 | -8.615850e-47 |
| Msa0547490 | Msa0853540 | 0.819477 | 1.138015e-52 | -8.615850e-47 |
| Msa0547490 | Msa0880140 | 0.833021 | 6.773780e-56 | -8.615850e-47 |
| Msa0547490 | Msa0896970 | 0.810409 | 1.169099e-50 | -8.615850e-47 |
| Msa0547490 | Msa0900180 | 0.812831 | 3.478097e-51 | -8.615850e-47 |
| Msa0547490 | Msa0909120 | 0.806498 | 7.990202e-50 | -8.615850e-47 |
| Msa0547490 | Msa0909140 | 0.800337 | 1.511029e-48 | -8.615850e-47 |
| Msa0547490 | Msa0977180 | -0.802819 | 4.681909e-49 | -8.615850e-47 |
| Msa0547490 | Msa0993290 | 0.803501 | 3.382055e-49 | -8.615850e-47 |
| Msa0547490 | Msa0993600 | 0.800057 | 1.723279e-48 | -8.615850e-47 |
| Msa0547490 | Msa1009000 | 0.811407 | 7.111882e-51 | -8.615850e-47 |
| Msa0547490 | Msa1055280 | 0.802969 | 4.358518e-49 | -8.615850e-47 |
| Msa0547490 | Msa1075220 | -0.802600 | 5.195871e-49 | -8.615850e-47 |
| Msa0547490 | Msa1078580 | -0.832082 | 1.158154e-55 | -8.615850e-47 |
| Msa0547490 | Msa1078750 | -0.837323 | 5.563575e-57 | -8.615850e-47 |
| Msa0547490 | Msa1079590 | 0.802524 | 5.386232e-49 | -8.615850e-47 |
| Msa0547490 | Msa1098560 | 0.818687 | 1.721415e-52 | -8.615850e-47 |
| Msa0547490 | Msa1116130 | -0.801574 | 8.443522e-49 | -8.615850e-47 |
| Msa0547490 | Msa1162550 | -0.800668 | 1.293464e-48 | -8.615850e-47 |
| Msa0547490 | Msa1168160 | 0.809554 | 1.787017e-50 | -8.615850e-47 |
| Msa0547490 | Msa1222970 | 0.835780 | 1.374723e-56 | -8.615850e-47 |
| Msa0547490 | Msa1228210 | 0.830476 | 2.875094e-55 | -8.615850e-47 |
| Msa0547490 | Msa1238930 | 0.801627 | 8.235689e-49 | -8.615850e-47 |
| Msa0547490 | Msa1242220 | 0.818516 | 1.881719e-52 | -8.615850e-47 |
| Msa0547490 | Msa1242230 | 0.815696 | 8.098767e-52 | -8.615850e-47 |
| Msa0547490 | Msa1264020 | 0.812977 | 3.231073e-51 | -8.615850e-47 |
| Msa0547490 | Msa1271280 | 0.843783 | 1.132994e-58 | -8.615850e-47 |
| Msa0547490 | Msa1271290 | 0.813223 | 2.853343e-51 | -8.615850e-47 |
| Msa0547490 | Msa1271300 | 0.838975 | 2.089509e-57 | -8.615850e-47 |
| Msa0547490 | Msa1283860 | 0.828006 | 1.142513e-54 | -8.615850e-47 |
| Msa0547490 | Msa1293770 | 0.818431 | 1.967201e-52 | -8.615850e-47 |
| Msa0547490 | Msa1308380 | 0.827354 | 1.638478e-54 | -8.615850e-47 |
| Msa0547490 | Msa1318240 | 0.809621 | 1.728207e-50 | -8.615850e-47 |
| Msa0547490 | Msa1322860 | 0.823706 | 1.199105e-53 | -8.615850e-47 |
| Msa0547490 | Msa1322890 | 0.815000 | 1.156696e-51 | -8.615850e-47 |
| Msa0547490 | Msa1324500 | 0.802309 | 5.963153e-49 | -8.615850e-47 |
| Msa0547490 | Msa1327050 | 0.819712 | 1.005740e-52 | -8.615850e-47 |
| Msa0547490 | Msa1367080 | 0.822656 | 2.107789e-53 | -8.615850e-47 |
| Msa0547490 | Msa1374550 | 0.830524 | 2.798365e-55 | -8.615850e-47 |
| Msa0547490 | Msa1411070 | 0.834381 | 3.096758e-56 | -8.615850e-47 |
| Msa0547490 | Msa1438250 | 0.800442 | 1.438238e-48 | -8.615850e-47 |
| Msa0547490 | Msa1445610 | -0.803258 | 3.797697e-49 | -8.615850e-47 |
| Msa0547490 | Msa1460240 | 0.802372 | 5.787396e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547490 | MtrunA17_Chr4g0029791 | 97.872 | 94 | 2 | 0 | 1 | 94 | 1 | 94 | 6.33e-65 | 190 |
| Msa0547490 | MtrunA17_Chr2g0326261 | 45.361 | 97 | 27 | 4 | 1 | 94 | 1 | 74 | 1.80e-11 | 54.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547490 | AT5G60400.3 | 40.449 | 89 | 51 | 1 | 6 | 94 | 5 | 91 | 9.26e-12 | 56.2 |
Find 24 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGTTCCTCTCTGTCTTTC+TGG | 0.075036 | 4_1:-40777941 | Msa0547490:CDS |
| GTTTAACATGGACTGCATTT+TGG | 0.222924 | 4_1:+40777979 | None:intergenic |
| AAAATCAAATATGCATCTTT+TGG | 0.233478 | 4_1:-40777340 | Msa0547490:three_prime_UTR |
| ACTTACTAGAATGTTAATTT+AGG | 0.250075 | 4_1:+40777444 | None:intergenic |
| AAAAGCTGCTTAGTTAGATT+TGG | 0.304540 | 4_1:-40777577 | Msa0547490:exon |
| CGAAGTTTCACCCTATTCAT+TGG | 0.395651 | 4_1:+40777397 | None:intergenic |
| TGATGATGATCTTGAAGATC+TGG | 0.442771 | 4_1:-40777649 | Msa0547490:CDS |
| TTCGTACGGACATATTTGTA+TGG | 0.453259 | 4_1:-40777378 | Msa0547490:three_prime_UTR |
| AGTGCATGCAAATCAAGAAA+AGG | 0.472454 | 4_1:-40777715 | Msa0547490:CDS |
| GACTGATGTGACCAATGAAT+AGG | 0.482367 | 4_1:-40777408 | Msa0547490:three_prime_UTR |
| TTAAACCTTCGTGCTACTCA+TGG | 0.498021 | 4_1:-40777962 | Msa0547490:CDS |
| ACTGATGTGACCAATGAATA+GGG | 0.501250 | 4_1:-40777407 | Msa0547490:three_prime_UTR |
| ACCGAAGAAGAAAAGATATG+AGG | 0.524381 | 4_1:-40777749 | Msa0547490:CDS |
| GTGCATGCAAATCAAGAAAA+GGG | 0.524986 | 4_1:-40777714 | Msa0547490:CDS |
| CTGTCTCTTACTTATCTCAC+AGG | 0.529035 | 4_1:-40777609 | Msa0547490:CDS |
| TACTCTTTGGAAAGAGCAAG+AGG | 0.575505 | 4_1:+40777908 | None:intergenic |
| AACATTCTAGTAAGTTCAGA+CGG | 0.600784 | 4_1:-40777436 | Msa0547490:three_prime_UTR |
| TTTGGAAAGAGCAAGAGGGT+TGG | 0.601098 | 4_1:+40777913 | None:intergenic |
| AAAAGGATGGGAAATAAAGG+AGG | 0.624688 | 4_1:+40778030 | None:intergenic |
| GAATAGGGTGAAACTTCGTA+CGG | 0.636390 | 4_1:-40777392 | Msa0547490:three_prime_UTR |
| ACTCTTTGGAAAGAGCAAGA+GGG | 0.667434 | 4_1:+40777909 | None:intergenic |
| AGTAGCACGAAGGTTTAACA+TGG | 0.672060 | 4_1:+40777967 | None:intergenic |
| GTGATTCCAGAAAGACAGAG+AGG | 0.712435 | 4_1:+40777935 | None:intergenic |
| GAACTCCATGAGTAGCACGA+AGG | 0.732005 | 4_1:+40777957 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTAATTTACTCTT+TGG | + | chr4_1:40777550-40777569 | None:intergenic | 10.0% |
| !! | AAATAAATTAATTTACTCTT+TGG | + | chr4_1:40777550-40777569 | None:intergenic | 10.0% |
| !! | TGATATATGTTTGAATTTGA+TGG | - | chr4_1:40777651-40777670 | Msa0547490:CDS | 20.0% |
| !! | ACTTACTAGAATGTTAATTT+AGG | + | chr4_1:40778001-40778020 | None:intergenic | 20.0% |
| !!! | ATGCATATTTGATTTTGATT+TGG | + | chr4_1:40778098-40778117 | None:intergenic | 20.0% |
| !!! | AAAATCAAATATGCATCTTT+TGG | - | chr4_1:40778102-40778121 | Msa0547490:five_prime_UTR | 20.0% |
| !! | TGATATATGTTTGAATTTGA+TGG | - | chr4_1:40777651-40777670 | Msa0547490:CDS | 20.0% |
| !! | ACTTACTAGAATGTTAATTT+AGG | + | chr4_1:40778001-40778020 | None:intergenic | 20.0% |
| !!! | ATGCATATTTGATTTTGATT+TGG | + | chr4_1:40778098-40778117 | None:intergenic | 20.0% |
| !!! | AAAATCAAATATGCATCTTT+TGG | - | chr4_1:40778102-40778121 | Msa0547490:five_prime_UTR | 20.0% |
| !! | TTTTCTAGGTAAAGGAAAAA+AGG | + | chr4_1:40777432-40777451 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTTTTCTAGGTAA+AGG | + | chr4_1:40777440-40777459 | None:intergenic | 25.0% |
| !!! | TGGTTTGTTTTGTTTTTTCT+AGG | + | chr4_1:40777446-40777465 | None:intergenic | 25.0% |
| !! | TCAAAGAAACAATGATTTTG+TGG | - | chr4_1:40777760-40777779 | Msa0547490:CDS | 25.0% |
| !! | TTTTCTAGGTAAAGGAAAAA+AGG | + | chr4_1:40777432-40777451 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTTTTCTAGGTAA+AGG | + | chr4_1:40777440-40777459 | None:intergenic | 25.0% |
| !!! | TGGTTTGTTTTGTTTTTTCT+AGG | + | chr4_1:40777446-40777465 | None:intergenic | 25.0% |
| !! | TCAAAGAAACAATGATTTTG+TGG | - | chr4_1:40777760-40777779 | Msa0547490:CDS | 25.0% |
| GAAAAAAGGATGGGAAATAA+AGG | + | chr4_1:40777418-40777437 | None:intergenic | 30.0% | |
| TAGGTAAAGGAAAAAAGGAT+GGG | + | chr4_1:40777427-40777446 | None:intergenic | 30.0% | |
| ! | TCCTCATATCTTTTCTTCTT+CGG | + | chr4_1:40777697-40777716 | None:intergenic | 30.0% |
| ! | AATGATTTTGTGGAGATGAA+AGG | - | chr4_1:40777770-40777789 | Msa0547490:intron | 30.0% |
| AAAAGCTGCTTAGTTAGATT+TGG | - | chr4_1:40777865-40777884 | Msa0547490:intron | 30.0% | |
| ! | TCTAGATCACTTTCATTTTC+TGG | - | chr4_1:40777902-40777921 | Msa0547490:intron | 30.0% |
| AACATTCTAGTAAGTTCAGA+CGG | - | chr4_1:40778006-40778025 | Msa0547490:five_prime_UTR | 30.0% | |
| GAAAAAAGGATGGGAAATAA+AGG | + | chr4_1:40777418-40777437 | None:intergenic | 30.0% | |
| TAGGTAAAGGAAAAAAGGAT+GGG | + | chr4_1:40777427-40777446 | None:intergenic | 30.0% | |
| ! | TCCTCATATCTTTTCTTCTT+CGG | + | chr4_1:40777697-40777716 | None:intergenic | 30.0% |
| ! | AATGATTTTGTGGAGATGAA+AGG | - | chr4_1:40777770-40777789 | Msa0547490:intron | 30.0% |
| AAAAGCTGCTTAGTTAGATT+TGG | - | chr4_1:40777865-40777884 | Msa0547490:intron | 30.0% | |
| ! | TCTAGATCACTTTCATTTTC+TGG | - | chr4_1:40777902-40777921 | Msa0547490:intron | 30.0% |
| AACATTCTAGTAAGTTCAGA+CGG | - | chr4_1:40778006-40778025 | Msa0547490:five_prime_UTR | 30.0% | |
| AAAAGGATGGGAAATAAAGG+AGG | + | chr4_1:40777415-40777434 | None:intergenic | 35.0% | |
| CTAGGTAAAGGAAAAAAGGA+TGG | + | chr4_1:40777428-40777447 | None:intergenic | 35.0% | |
| !! | GTTTAACATGGACTGCATTT+TGG | + | chr4_1:40777466-40777485 | None:intergenic | 35.0% |
| GTGAGATCATAGATCAAAAG+AGG | + | chr4_1:40777592-40777611 | None:intergenic | 35.0% | |
| !! | ATGTTTGAATTTGATGGTGC+AGG | - | chr4_1:40777657-40777676 | Msa0547490:CDS | 35.0% |
| ACCGAAGAAGAAAAGATATG+AGG | - | chr4_1:40777693-40777712 | Msa0547490:CDS | 35.0% | |
| AGTGCATGCAAATCAAGAAA+AGG | - | chr4_1:40777727-40777746 | Msa0547490:CDS | 35.0% | |
| GTGCATGCAAATCAAGAAAA+GGG | - | chr4_1:40777728-40777747 | Msa0547490:CDS | 35.0% | |
| ! | TGATGATGATCTTGAAGATC+TGG | - | chr4_1:40777793-40777812 | Msa0547490:intron | 35.0% |
| ACTGATGTGACCAATGAATA+GGG | - | chr4_1:40778035-40778054 | Msa0547490:five_prime_UTR | 35.0% | |
| TTCGTACGGACATATTTGTA+TGG | - | chr4_1:40778064-40778083 | Msa0547490:five_prime_UTR | 35.0% | |
| AAAAGGATGGGAAATAAAGG+AGG | + | chr4_1:40777415-40777434 | None:intergenic | 35.0% | |
| CTAGGTAAAGGAAAAAAGGA+TGG | + | chr4_1:40777428-40777447 | None:intergenic | 35.0% | |
| !! | GTTTAACATGGACTGCATTT+TGG | + | chr4_1:40777466-40777485 | None:intergenic | 35.0% |
| GTGAGATCATAGATCAAAAG+AGG | + | chr4_1:40777592-40777611 | None:intergenic | 35.0% | |
| !! | ATGTTTGAATTTGATGGTGC+AGG | - | chr4_1:40777657-40777676 | Msa0547490:CDS | 35.0% |
| ACCGAAGAAGAAAAGATATG+AGG | - | chr4_1:40777693-40777712 | Msa0547490:CDS | 35.0% | |
| AGTGCATGCAAATCAAGAAA+AGG | - | chr4_1:40777727-40777746 | Msa0547490:CDS | 35.0% | |
| GTGCATGCAAATCAAGAAAA+GGG | - | chr4_1:40777728-40777747 | Msa0547490:CDS | 35.0% | |
| ! | TGATGATGATCTTGAAGATC+TGG | - | chr4_1:40777793-40777812 | Msa0547490:intron | 35.0% |
| ACTGATGTGACCAATGAATA+GGG | - | chr4_1:40778035-40778054 | Msa0547490:five_prime_UTR | 35.0% | |
| TTCGTACGGACATATTTGTA+TGG | - | chr4_1:40778064-40778083 | Msa0547490:five_prime_UTR | 35.0% | |
| AGTAGCACGAAGGTTTAACA+TGG | + | chr4_1:40777478-40777497 | None:intergenic | 40.0% | |
| ! | TTAAACCTTCGTGCTACTCA+TGG | - | chr4_1:40777480-40777499 | Msa0547490:three_prime_UTR | 40.0% |
| ! | ACTCTTTGGAAAGAGCAAGA+GGG | + | chr4_1:40777536-40777555 | None:intergenic | 40.0% |
| ! | TACTCTTTGGAAAGAGCAAG+AGG | + | chr4_1:40777537-40777556 | None:intergenic | 40.0% |
| !! | TTGAATTTGATGGTGCAGGA+TGG | - | chr4_1:40777661-40777680 | Msa0547490:CDS | 40.0% |
| CTGTCTCTTACTTATCTCAC+AGG | - | chr4_1:40777833-40777852 | Msa0547490:intron | 40.0% | |
| GACTGATGTGACCAATGAAT+AGG | - | chr4_1:40778034-40778053 | Msa0547490:five_prime_UTR | 40.0% | |
| CGAAGTTTCACCCTATTCAT+TGG | + | chr4_1:40778048-40778067 | None:intergenic | 40.0% | |
| GAATAGGGTGAAACTTCGTA+CGG | - | chr4_1:40778050-40778069 | Msa0547490:five_prime_UTR | 40.0% | |
| AGTAGCACGAAGGTTTAACA+TGG | + | chr4_1:40777478-40777497 | None:intergenic | 40.0% | |
| ! | TTAAACCTTCGTGCTACTCA+TGG | - | chr4_1:40777480-40777499 | Msa0547490:three_prime_UTR | 40.0% |
| ! | ACTCTTTGGAAAGAGCAAGA+GGG | + | chr4_1:40777536-40777555 | None:intergenic | 40.0% |
| ! | TACTCTTTGGAAAGAGCAAG+AGG | + | chr4_1:40777537-40777556 | None:intergenic | 40.0% |
| !! | TTGAATTTGATGGTGCAGGA+TGG | - | chr4_1:40777661-40777680 | Msa0547490:CDS | 40.0% |
| CTGTCTCTTACTTATCTCAC+AGG | - | chr4_1:40777833-40777852 | Msa0547490:intron | 40.0% | |
| GACTGATGTGACCAATGAAT+AGG | - | chr4_1:40778034-40778053 | Msa0547490:five_prime_UTR | 40.0% | |
| CGAAGTTTCACCCTATTCAT+TGG | + | chr4_1:40778048-40778067 | None:intergenic | 40.0% | |
| GAATAGGGTGAAACTTCGTA+CGG | - | chr4_1:40778050-40778069 | Msa0547490:five_prime_UTR | 40.0% | |
| GTGATTCCAGAAAGACAGAG+AGG | + | chr4_1:40777510-40777529 | None:intergenic | 45.0% | |
| TTTGGAAAGAGCAAGAGGGT+TGG | + | chr4_1:40777532-40777551 | None:intergenic | 45.0% | |
| GTGATTCCAGAAAGACAGAG+AGG | + | chr4_1:40777510-40777529 | None:intergenic | 45.0% | |
| TTTGGAAAGAGCAAGAGGGT+TGG | + | chr4_1:40777532-40777551 | None:intergenic | 45.0% | |
| GAACTCCATGAGTAGCACGA+AGG | + | chr4_1:40777488-40777507 | None:intergenic | 50.0% | |
| GGAGTTCCTCTCTGTCTTTC+TGG | - | chr4_1:40777501-40777520 | Msa0547490:three_prime_UTR | 50.0% | |
| GAACTCCATGAGTAGCACGA+AGG | + | chr4_1:40777488-40777507 | None:intergenic | 50.0% | |
| GGAGTTCCTCTCTGTCTTTC+TGG | - | chr4_1:40777501-40777520 | Msa0547490:three_prime_UTR | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 40777338 | 40778126 | 40777338 | ID=Msa0547490;Name=Msa0547490 |
| chr4_1 | mRNA | 40777338 | 40778126 | 40777338 | ID=Msa0547490-mRNA-1;Parent=Msa0547490;Name=Msa0547490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=130|1|1|1|1|1|2|249|94 |
| chr4_1 | exon | 40777338 | 40777785 | 40777338 | ID=Msa0547490-mRNA-1:exon:10406;Parent=Msa0547490-mRNA-1 |
| chr4_1 | exon | 40777911 | 40778126 | 40777911 | ID=Msa0547490-mRNA-1:exon:10405;Parent=Msa0547490-mRNA-1 |
| chr4_1 | five_prime_UTR | 40777997 | 40778126 | 40777997 | ID=Msa0547490-mRNA-1:five_prime_utr;Parent=Msa0547490-mRNA-1 |
| chr4_1 | CDS | 40777911 | 40777996 | 40777911 | ID=Msa0547490-mRNA-1:cds;Parent=Msa0547490-mRNA-1 |
| chr4_1 | CDS | 40777587 | 40777785 | 40777587 | ID=Msa0547490-mRNA-1:cds;Parent=Msa0547490-mRNA-1 |
| chr4_1 | three_prime_UTR | 40777338 | 40777586 | 40777338 | ID=Msa0547490-mRNA-1:three_prime_utr;Parent=Msa0547490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
