Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440610 | XP_003598458.2 | 92.019 | 639 | 36 | 3 | 1 | 639 | 1 | 624 | 0.0 | 1154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440610 | sp|Q0WVD6|ANM3_ARATH | 50.929 | 646 | 231 | 13 | 22 | 638 | 13 | 601 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440610 | G7IYP7 | 92.019 | 639 | 36 | 3 | 1 | 639 | 1 | 624 | 0.0 | 1154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047160 | Msa0440610 | 0.806805 | 6.881617e-50 | -8.615850e-47 |
| Msa0118710 | Msa0440610 | 0.800683 | 1.284382e-48 | -8.615850e-47 |
| Msa0221030 | Msa0440610 | 0.812226 | 4.716609e-51 | -8.615850e-47 |
| Msa0440610 | Msa0581280 | 0.811069 | 8.416381e-51 | -8.615850e-47 |
| Msa0440610 | Msa0715650 | 0.803484 | 3.411054e-49 | -8.615850e-47 |
| Msa0440610 | Msa0719420 | 0.813904 | 2.020724e-51 | -8.615850e-47 |
| Msa0440610 | Msa0753140 | 0.811581 | 6.516032e-51 | -8.615850e-47 |
| Msa0440610 | Msa0789680 | 0.814763 | 1.305161e-51 | -8.615850e-47 |
| Msa0440610 | Msa0806880 | 0.800153 | 1.647040e-48 | -8.615850e-47 |
| Msa0440610 | Msa1019240 | 0.807867 | 4.098821e-50 | -8.615850e-47 |
| Msa0440610 | Msa1088490 | 0.829424 | 5.188886e-55 | -8.615850e-47 |
| Msa0440610 | Msa1104210 | 0.800005 | 1.765710e-48 | -8.615850e-47 |
| Msa0440610 | Msa1166870 | 0.811821 | 5.778323e-51 | -8.615850e-47 |
| Msa0440610 | Msa1209200 | 0.803242 | 3.828129e-49 | -8.615850e-47 |
| Msa0440610 | Msa1209260 | 0.808467 | 3.052996e-50 | -8.615850e-47 |
| Msa0440610 | Msa1260530 | 0.815038 | 1.134426e-51 | -8.615850e-47 |
| Msa0440610 | Msa1265630 | 0.805769 | 1.137720e-49 | -8.615850e-47 |
| Msa0440610 | Msa1305050 | 0.803779 | 2.961459e-49 | -8.615850e-47 |
| Msa0440610 | Msa1331710 | 0.830316 | 3.144926e-55 | -8.615850e-47 |
| Msa0440610 | Msa1366180 | 0.824595 | 7.414655e-54 | -8.615850e-47 |
| Msa0440610 | Msa1413500 | 0.808996 | 2.352929e-50 | -8.615850e-47 |
| Msa0440610 | Msa1433310 | 0.805322 | 1.411510e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440610 | MtrunA17_Chr3g0082021 | 92.019 | 639 | 36 | 3 | 1 | 639 | 1 | 624 | 0.0 | 1154 |
| Msa0440610 | MtrunA17_Chr6g0488051 | 36.533 | 323 | 159 | 10 | 257 | 579 | 65 | 341 | 1.91e-50 | 179 |
| Msa0440610 | MtrunA17_Chr1g0165131 | 36.254 | 331 | 161 | 9 | 256 | 575 | 78 | 369 | 2.08e-49 | 177 |
| Msa0440610 | MtrunA17_Chr2g0306801 | 32.653 | 343 | 177 | 14 | 256 | 580 | 25 | 331 | 7.84e-35 | 135 |
| Msa0440610 | MtrunA17_Chr4g0067351 | 29.834 | 362 | 202 | 13 | 229 | 580 | 109 | 428 | 2.01e-27 | 116 |
| Msa0440610 | MtrunA17_Chr1g0211591 | 30.508 | 295 | 156 | 10 | 277 | 558 | 1 | 259 | 3.43e-27 | 111 |
| Msa0440610 | MtrunA17_Chr2g0295951 | 30.091 | 329 | 183 | 12 | 257 | 580 | 144 | 430 | 1.42e-26 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440610 | AT3G12270.1 | 50.929 | 646 | 231 | 13 | 22 | 638 | 13 | 601 | 0.0 | 585 |
| Msa0440610 | AT2G19670.1 | 37.255 | 357 | 177 | 12 | 257 | 613 | 48 | 357 | 2.34e-55 | 192 |
| Msa0440610 | AT4G29510.1 | 36.212 | 359 | 178 | 12 | 257 | 613 | 72 | 381 | 7.74e-55 | 192 |
| Msa0440610 | AT3G20020.1 | 36.467 | 351 | 153 | 9 | 256 | 575 | 82 | 393 | 1.46e-51 | 184 |
| Msa0440610 | AT3G20020.3 | 36.467 | 351 | 153 | 9 | 256 | 575 | 82 | 393 | 3.13e-51 | 184 |
| Msa0440610 | AT3G20020.2 | 33.903 | 351 | 140 | 9 | 256 | 575 | 82 | 371 | 1.02e-43 | 162 |
| Msa0440610 | AT1G04870.2 | 30.075 | 399 | 202 | 16 | 257 | 631 | 35 | 380 | 2.13e-36 | 140 |
| Msa0440610 | AT3G06930.2 | 31.402 | 328 | 180 | 12 | 257 | 580 | 148 | 434 | 5.66e-29 | 122 |
| Msa0440610 | AT3G06930.1 | 31.402 | 328 | 180 | 12 | 257 | 580 | 148 | 434 | 6.26e-29 | 121 |
| Msa0440610 | AT5G49020.1 | 29.762 | 336 | 175 | 12 | 257 | 580 | 151 | 437 | 7.74e-28 | 118 |
| Msa0440610 | AT5G49020.2 | 29.762 | 336 | 175 | 12 | 257 | 580 | 149 | 435 | 9.06e-28 | 118 |
| Msa0440610 | AT1G04870.1 | 25.658 | 304 | 163 | 14 | 352 | 631 | 13 | 277 | 4.00e-14 | 73.6 |
Find 143 sgRNAs with CRISPR-Local
Find 399 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTTCTACGACTCCTTTC+TGG | 0.158834 | 3_3:-8091186 | None:intergenic |
| AATGAATCATCTTGCATAAA+AGG | 0.183353 | 3_3:-8089685 | None:intergenic |
| AAAGTTAATGAAAGTTATTT+TGG | 0.207730 | 3_3:+8090006 | Msa0440610:CDS |
| GTCTGCACCATCTGCTATTT+TGG | 0.210860 | 3_3:-8091545 | None:intergenic |
| TTTCACCGCAACAGCTTCTT+TGG | 0.219398 | 3_3:+8092324 | Msa0440610:CDS |
| CACAGACAATCTTAACTTTC+CGG | 0.225094 | 3_3:+8092503 | Msa0440610:CDS |
| GAACCCATTGCCATTGGATT+TGG | 0.227276 | 3_3:+8092526 | Msa0440610:CDS |
| CCTTCAGTGCCAATTGTTTC+CGG | 0.228262 | 3_3:-8092568 | None:intergenic |
| TCAGATAAGGAACTTGTTAA+TGG | 0.231302 | 3_3:+8089886 | Msa0440610:CDS |
| AACCCATTGCCATTGGATTT+GGG | 0.279768 | 3_3:+8092527 | Msa0440610:CDS |
| GGAAGTGCAGGAACTGAAAT+TGG | 0.286446 | 3_3:-8086892 | None:intergenic |
| TCACAAACGTTCTCCCAAAA+TGG | 0.294956 | 3_3:-8091969 | None:intergenic |
| GAGGTACAAGTCTTCCATTT+TGG | 0.302479 | 3_3:+8091955 | Msa0440610:CDS |
| TACCAGTTCCACTATTCTTC+AGG | 0.304524 | 3_3:+8092079 | Msa0440610:CDS |
| TTTGGGTCTTACAGTTCATT+TGG | 0.315617 | 3_3:+8090024 | Msa0440610:CDS |
| AAGAATCCCTCTCTGCTAAA+TGG | 0.326618 | 3_3:+8090238 | Msa0440610:CDS |
| CAGCTCAAGCAGGGGCTTCA+AGG | 0.336862 | 3_3:+8090966 | Msa0440610:CDS |
| ATCCAATGGCAATGGGTTCC+CGG | 0.357682 | 3_3:-8092522 | None:intergenic |
| ATCACATTGCAACACATATT+AGG | 0.362480 | 3_3:+8089983 | Msa0440610:CDS |
| GCTAAATGGTGCTGTGGTTA+TGG | 0.363146 | 3_3:+8090252 | Msa0440610:CDS |
| TGACATCAACTATAGGATAT+CGG | 0.365527 | 3_3:-8092037 | None:intergenic |
| GTGATTCTGCAAATCATGTT+TGG | 0.365703 | 3_3:-8089599 | None:intergenic |
| GAGCAGCCCATGGCTGCTGC+AGG | 0.371069 | 3_3:+8091469 | Msa0440610:CDS |
| ACAGACAATCTTAACTTTCC+GGG | 0.373070 | 3_3:+8092504 | Msa0440610:CDS |
| TCTATCCTGTTGTGTTAGTT+TGG | 0.374526 | 3_3:+8092859 | Msa0440610:three_prime_UTR |
| AAAACATGTTGCTGGTGTTA+TGG | 0.377230 | 3_3:+8092382 | Msa0440610:CDS |
| ACTTATCGATTATAATTAAG+AGG | 0.379573 | 3_3:-8092916 | None:intergenic |
| GATTTGAAAGACGCAATTTA+CGG | 0.384974 | 3_3:+8089781 | Msa0440610:CDS |
| ATGGACGTCGGCTGTGGAAC+TGG | 0.403171 | 3_3:+8090271 | Msa0440610:CDS |
| GTTGTCCTATGGTTTGATAC+TGG | 0.404254 | 3_3:+8092406 | Msa0440610:CDS |
| AATATGTTCGGCAGTAAAAC+AGG | 0.418992 | 3_3:-8092773 | None:intergenic |
| CAGATAAGGAACTTGTTAAT+GGG | 0.423907 | 3_3:+8089887 | Msa0440610:CDS |
| ATCCACTTCATGGTGCTTCA+TGG | 0.428328 | 3_3:-8092302 | None:intergenic |
| CATGATGTAACTGACTTCAA+TGG | 0.431414 | 3_3:+8089625 | Msa0440610:CDS |
| AACTGGTAACTAAATCTTGA+TGG | 0.438792 | 3_3:-8092064 | None:intergenic |
| TTGGATTTGGGGAAGAAAAC+GGG | 0.442610 | 3_3:+8092539 | Msa0440610:CDS |
| AAGAACAACAATGGGACGAT+TGG | 0.443965 | 3_3:+8086817 | Msa0440610:CDS |
| TCAATGGGATTAAGCCTTTG+TGG | 0.447033 | 3_3:+8089641 | Msa0440610:CDS |
| TGTTCTTGTTCAACTGTGTA+TGG | 0.447784 | 3_3:-8086765 | None:intergenic |
| GATGGCAGCAGTGGCATCTC+AGG | 0.448831 | 3_3:+8091015 | Msa0440610:CDS |
| ATTGGATTTGGGGAAGAAAA+CGG | 0.449649 | 3_3:+8092538 | Msa0440610:CDS |
| CAATGGGATTAAGCCTTTGT+GGG | 0.450013 | 3_3:+8089642 | Msa0440610:CDS |
| AATGAAATTAATGAGCTTGA+AGG | 0.452508 | 3_3:-8086994 | None:intergenic |
| TTCCGGGAACCCATTGCCAT+TGG | 0.454934 | 3_3:+8092520 | Msa0440610:CDS |
| AACCTGAAGAATAGTGGAAC+TGG | 0.459017 | 3_3:-8092081 | None:intergenic |
| CAAGTGCGTCTCCGACCATC+AGG | 0.460891 | 3_3:-8092685 | None:intergenic |
| GGGACAAAACCGGAAACAAT+TGG | 0.463028 | 3_3:+8092559 | Msa0440610:CDS |
| CGCAAATCAATCTTCACAGC+AGG | 0.465652 | 3_3:-8092595 | None:intergenic |
| TGGTCTATGACATCAACTAT+AGG | 0.466424 | 3_3:-8092044 | None:intergenic |
| GACATCAACTATAGGATATC+GGG | 0.467340 | 3_3:-8092036 | None:intergenic |
| AGACGAAGAAGAACAACAAT+GGG | 0.468141 | 3_3:+8086809 | Msa0440610:CDS |
| GGAAGAAAACGGGACAAAAC+CGG | 0.471450 | 3_3:+8092549 | Msa0440610:CDS |
| AGATGCCACTGCTGCCATCT+TGG | 0.473137 | 3_3:-8091011 | None:intergenic |
| TTTGTTGCAGGATTTGGAAA+AGG | 0.474514 | 3_3:+8091933 | Msa0440610:intron |
| AGGCTAGAATGGATGCTTAC+GGG | 0.475663 | 3_3:+8090203 | Msa0440610:intron |
| AAAATTCTAAAACATGTTGC+TGG | 0.477619 | 3_3:+8092374 | Msa0440610:CDS |
| TTTGACCAAACTAACACAAC+AGG | 0.478061 | 3_3:-8092864 | None:intergenic |
| TCGAGAGATGTTAAGTGATA+AGG | 0.479049 | 3_3:+8090053 | Msa0440610:CDS |
| TCCCCAAATCCAATGGCAAT+GGG | 0.479745 | 3_3:-8092529 | None:intergenic |
| TACATGTCCTGCAGCAGCCA+TGG | 0.480147 | 3_3:-8091476 | None:intergenic |
| TTGCGGTGAAATCCACTTCA+TGG | 0.482299 | 3_3:-8092312 | None:intergenic |
| AAAAGCGAAACTAGAGTCAA+TGG | 0.482482 | 3_3:+8091160 | Msa0440610:CDS |
| CTGATGGTCGGAGACGCACT+TGG | 0.483332 | 3_3:+8092686 | Msa0440610:CDS |
| ATTGATAAGAATCGAGAAGA+AGG | 0.483613 | 3_3:+8089937 | Msa0440610:CDS |
| TAACAGCGTGAAAATCGAAA+TGG | 0.484122 | 3_3:-8086941 | None:intergenic |
| TTCCCCAAATCCAATGGCAA+TGG | 0.484968 | 3_3:-8092530 | None:intergenic |
| TTGATGTATTGTTAAGTGAA+TGG | 0.485877 | 3_3:+8091263 | Msa0440610:CDS |
| AACTTTGGTGAATTTGAAGA+AGG | 0.486916 | 3_3:+8089715 | Msa0440610:CDS |
| TTGCTATATGAATCCATGCT+TGG | 0.487442 | 3_3:+8091298 | Msa0440610:CDS |
| ACTTACACCAGCAGCTTCCA+TGG | 0.492375 | 3_3:-8092662 | None:intergenic |
| TGTTAGAAATTCTCTCAACT+TGG | 0.492743 | 3_3:+8086959 | Msa0440610:CDS |
| CTTGCCTAGTTCCTCAGATA+AGG | 0.496629 | 3_3:+8089873 | Msa0440610:CDS |
| GATTCATTGCTGTACAACTT+TGG | 0.498902 | 3_3:+8089700 | Msa0440610:CDS |
| AGAACAACAATGGGACGATT+GGG | 0.501820 | 3_3:+8086818 | Msa0440610:CDS |
| GCTGTGGAACTGGCATCCTC+AGG | 0.503024 | 3_3:+8090281 | Msa0440610:CDS |
| GAGAGCAGATGTTGGAGTTG+TGG | 0.503025 | 3_3:+8089562 | Msa0440610:CDS |
| GGGGATGTTGACAGCACAGC+TGG | 0.507223 | 3_3:-8092457 | None:intergenic |
| GGTGTTATGGAGTTGTCCTA+TGG | 0.510283 | 3_3:+8092395 | Msa0440610:CDS |
| TAGGCTAGAATGGATGCTTA+CGG | 0.510366 | 3_3:+8090202 | Msa0440610:intron |
| GGCCCAAACCTGAAGAATAG+TGG | 0.515947 | 3_3:-8092087 | None:intergenic |
| GATTTACAACTAGATTCTGC+CGG | 0.516034 | 3_3:+8092428 | Msa0440610:CDS |
| GTGGTTATGGACGTCGGCTG+TGG | 0.518806 | 3_3:+8090265 | Msa0440610:CDS |
| CAATTTCTTCAACCATGCCA+TGG | 0.519711 | 3_3:-8091210 | None:intergenic |
| AGCTCAAGCAGGGGCTTCAA+GGG | 0.522466 | 3_3:+8090967 | Msa0440610:CDS |
| CATTAATTTCATTCGCTCCA+AGG | 0.525000 | 3_3:+8087004 | Msa0440610:CDS |
| CCGGAAACAATTGGCACTGA+AGG | 0.532793 | 3_3:+8092568 | Msa0440610:CDS |
| GGTGAAGAGAAGCACTATGT+TGG | 0.535323 | 3_3:-8086920 | None:intergenic |
| ATGATGTAACTGACTTCAAT+GGG | 0.536664 | 3_3:+8089626 | Msa0440610:CDS |
| TGTATTGTTAAGTGAATGGA+TGG | 0.541095 | 3_3:+8091267 | Msa0440610:CDS |
| ATCCTACCAGACCTTTGACT+TGG | 0.543164 | 3_3:+8092276 | Msa0440610:intron |
| GACATTTCCATGGAAGCTGC+TGG | 0.547329 | 3_3:+8092655 | Msa0440610:CDS |
| TCGCAGCATTGACATTTCCA+TGG | 0.548287 | 3_3:+8092645 | Msa0440610:CDS |
| ACAGCACAGCTGGTGTATCC+CGG | 0.549263 | 3_3:-8092447 | None:intergenic |
| ACATGTCCTGCAGCAGCCAT+GGG | 0.550043 | 3_3:-8091475 | None:intergenic |
| ACCCATTGCCATTGGATTTG+GGG | 0.554541 | 3_3:+8092528 | Msa0440610:CDS |
| CAGTGCTTTATGCACGTGAC+CGG | 0.559254 | 3_3:+8091323 | Msa0440610:CDS |
| TGACATGTCTTGCATTGGGG+AGG | 0.560880 | 3_3:+8091995 | Msa0440610:CDS |
| CTCTCTGCTAAATGGTGCTG+TGG | 0.560984 | 3_3:+8090246 | Msa0440610:CDS |
| AGAGTCAATGGCAACCAGAA+AGG | 0.562757 | 3_3:+8091172 | Msa0440610:CDS |
| TAAATCCAGTATCAAACCAT+AGG | 0.566573 | 3_3:-8092411 | None:intergenic |
| TTCAAGGGTCATTGCAGTTG+AGG | 0.568402 | 3_3:+8090982 | Msa0440610:CDS |
| ATGTTGGAACAAGGAAGTGC+AGG | 0.569552 | 3_3:-8086904 | None:intergenic |
| ATTTACAACTAGATTCTGCC+GGG | 0.570970 | 3_3:+8092429 | Msa0440610:CDS |
| AGTTCCTTATCTGAGGAACT+AGG | 0.571202 | 3_3:-8089877 | None:intergenic |
| GCTGCTGGTGTAAGTCCTGA+TGG | 0.574483 | 3_3:+8092670 | Msa0440610:CDS |
| TTATAATTAAGAGGCAAAAG+AGG | 0.574685 | 3_3:-8092907 | None:intergenic |
| ATTAACAAGTTCCTTATCTG+AGG | 0.578302 | 3_3:-8089884 | None:intergenic |
| AAGACGAAGAAGAACAACAA+TGG | 0.579780 | 3_3:+8086808 | Msa0440610:CDS |
| CGTAGAAGTGGTCCATGGCA+TGG | 0.579923 | 3_3:+8091198 | Msa0440610:CDS |
| CCTCACAAGATCTTCATCCA+TGG | 0.589189 | 3_3:-8089758 | None:intergenic |
| AGATGAAGAAACTTCAACCA+TGG | 0.589472 | 3_3:+8089741 | Msa0440610:CDS |
| ACAGCACCATTTAGCAGAGA+GGG | 0.596424 | 3_3:-8090244 | None:intergenic |
| TAAGGAACTTGTTAATGGGA+AGG | 0.597788 | 3_3:+8089891 | Msa0440610:CDS |
| GTTGCAGGATTTGGAAAAGG+AGG | 0.599248 | 3_3:+8091936 | Msa0440610:intron |
| TGCTGCGATGCTCAGTAGAA+CGG | 0.600832 | 3_3:-8092630 | None:intergenic |
| CTGGTGTAAGTCCTGATGGT+CGG | 0.603021 | 3_3:+8092674 | Msa0440610:CDS |
| AGGTGGCAGAGAGCAGATGT+TGG | 0.604238 | 3_3:+8089554 | Msa0440610:intron |
| TAGTACCAAGATGGCAGCAG+TGG | 0.608826 | 3_3:+8091006 | Msa0440610:CDS |
| TTGATAAGAATCGAGAAGAA+GGG | 0.611350 | 3_3:+8089938 | Msa0440610:CDS |
| CCATGGATGAAGATCTTGTG+AGG | 0.612648 | 3_3:+8089758 | Msa0440610:CDS |
| TGGTTCCAAAGAAGCTGTTG+CGG | 0.612908 | 3_3:-8092329 | None:intergenic |
| TACCATGAAGCACCATGAAG+TGG | 0.618767 | 3_3:+8092300 | Msa0440610:CDS |
| CCAGAAAGGAGTCGTAGAAG+TGG | 0.620254 | 3_3:+8091186 | Msa0440610:CDS |
| GACAGAATATCAAGTACATG+TGG | 0.624027 | 3_3:-8092825 | None:intergenic |
| ATAGTAGCCAAAATAGCAGA+TGG | 0.625632 | 3_3:+8091538 | Msa0440610:CDS |
| AGTTGAGGCTAGTACCAAGA+TGG | 0.630020 | 3_3:+8090997 | Msa0440610:CDS |
| CTTCATGGTAGCCAAGTCAA+AGG | 0.631303 | 3_3:-8092287 | None:intergenic |
| CTTGCACTCCGAAAACACAT+TGG | 0.632730 | 3_3:+8092479 | Msa0440610:CDS |
| AGAAGCACTATGTTGGAACA+AGG | 0.634735 | 3_3:-8086913 | None:intergenic |
| CATGGATGAAGATCTTGTGA+GGG | 0.645841 | 3_3:+8089759 | Msa0440610:CDS |
| TGTGTTGCAATGTGATTCTG+AGG | 0.646033 | 3_3:-8089976 | None:intergenic |
| GGAGTCGTAGAAGTGGTCCA+TGG | 0.647150 | 3_3:+8091193 | Msa0440610:CDS |
| TATCACTTAACATCTCTCGA+TGG | 0.658911 | 3_3:-8090050 | None:intergenic |
| ATAAAGCACTGAGCCAAGCA+TGG | 0.659169 | 3_3:-8091311 | None:intergenic |
| GTTAATGGGAAGGACTCAAG+AGG | 0.659949 | 3_3:+8089901 | Msa0440610:CDS |
| TATTTATCGTCGTCCCACAA+AGG | 0.660086 | 3_3:-8089655 | None:intergenic |
| TAGCGTAGCAGAGCAGCCCA+TGG | 0.661446 | 3_3:+8091459 | Msa0440610:intron |
| CACAGCACCATTTAGCAGAG+AGG | 0.673529 | 3_3:-8090245 | None:intergenic |
| GCAAATCAATCTTCACAGCA+GGG | 0.679118 | 3_3:-8092594 | None:intergenic |
| AACAATACATCAACACTGTG+AGG | 0.681464 | 3_3:-8091253 | None:intergenic |
| GGTGCTGTGGTTATGGACGT+CGG | 0.684795 | 3_3:+8090259 | Msa0440610:CDS |
| GACGATTGGGAAGAAAACGA+AGG | 0.726813 | 3_3:+8086831 | Msa0440610:CDS |
| GTATTGTTAAGTGAATGGAT+GGG | 0.772028 | 3_3:+8091268 | Msa0440610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAGAAAAATATAAAAAA+TGG | + | chr3_3:8089276-8089295 | Msa0440610:intron | 10.0% |
| !! | AAGTACTATATTATAAATTT+CGG | + | chr3_3:8089466-8089485 | Msa0440610:intron | 10.0% |
| !!! | TGGTTTTTATTTTTATTTAT+CGG | + | chr3_3:8092795-8092814 | Msa0440610:three_prime_UTR | 10.0% |
| !! | AAAAACAAAAACTATCAAAA+GGG | - | chr3_3:8087041-8087060 | None:intergenic | 15.0% |
| !! | AAAAAACAAAAACTATCAAA+AGG | - | chr3_3:8087042-8087061 | None:intergenic | 15.0% |
| !!! | TTCTAGAATTGAAAATTTAT+TGG | + | chr3_3:8088034-8088053 | Msa0440610:intron | 15.0% |
| !!! | AATAAGTGTATTTTGATATT+GGG | + | chr3_3:8088452-8088471 | Msa0440610:intron | 15.0% |
| !!! | CAAATTAAGAATATTTTTGT+TGG | + | chr3_3:8088838-8088857 | Msa0440610:intron | 15.0% |
| !!! | TTTTGTGCTTTATAAATTTA+AGG | + | chr3_3:8088865-8088884 | Msa0440610:intron | 15.0% |
| !!! | AAAGTTAATGAAAGTTATTT+TGG | + | chr3_3:8090006-8090025 | Msa0440610:CDS | 15.0% |
| !!! | AAGTTAATGAAAGTTATTTT+GGG | + | chr3_3:8090007-8090026 | Msa0440610:CDS | 15.0% |
| !!! | TTTTCTTCAAATTTTAATTC+AGG | + | chr3_3:8091108-8091127 | Msa0440610:intron | 15.0% |
| !!! | AAAAATTAAATAGTTCTAGA+TGG | - | chr3_3:8091415-8091434 | None:intergenic | 15.0% |
| !!! | AAAAAAACGTTAGAATTTTA+AGG | + | chr3_3:8091610-8091629 | Msa0440610:intron | 15.0% |
| !! | AAAATAAAAACCAATATGTT+CGG | - | chr3_3:8092788-8092807 | None:intergenic | 15.0% |
| !!! | TTTTATAATCCATTGCAAAT+GGG | - | chr3_3:8087103-8087122 | None:intergenic | 20.0% |
| !!! | TTTTTATAATCCATTGCAAA+TGG | - | chr3_3:8087104-8087123 | None:intergenic | 20.0% |
| !! | TTTCAAACTTAGAAAAATCA+GGG | - | chr3_3:8088166-8088185 | None:intergenic | 20.0% |
| !!! | TTTTCAAACTTAGAAAAATC+AGG | - | chr3_3:8088167-8088186 | None:intergenic | 20.0% |
| !!! | TATCCAAAATCAATTTTACA+TGG | - | chr3_3:8088394-8088413 | None:intergenic | 20.0% |
| !! | AAATGAAGGAGATAAAATAA+TGG | + | chr3_3:8088429-8088448 | Msa0440610:intron | 20.0% |
| !!! | GAATAAGTGTATTTTGATAT+TGG | + | chr3_3:8088451-8088470 | Msa0440610:intron | 20.0% |
| !!! | TTTGTGCTTTTATCAATTTA+AGG | + | chr3_3:8088586-8088605 | Msa0440610:intron | 20.0% |
| !! | AAATACTTATTGTGTATGTT+TGG | + | chr3_3:8088690-8088709 | Msa0440610:intron | 20.0% |
| !!! | CTAAAATTGATTTTGACATT+TGG | - | chr3_3:8089171-8089190 | None:intergenic | 20.0% |
| !!! | CAAATGTCAAAATCAATTTT+AGG | + | chr3_3:8089169-8089188 | Msa0440610:intron | 20.0% |
| !!! | ATTAACTACCAATTTTTTCA+CGG | - | chr3_3:8089821-8089840 | None:intergenic | 20.0% |
| !!! | AAAATGTACTTCTCATTTTT+TGG | + | chr3_3:8090079-8090098 | Msa0440610:intron | 20.0% |
| !!! | AGTTACAACTATTTTTATGT+AGG | + | chr3_3:8090183-8090202 | Msa0440610:intron | 20.0% |
| !! | ATATAGTAACCTATCAATTT+GGG | - | chr3_3:8090782-8090801 | None:intergenic | 20.0% |
| !! | TATATAGTAACCTATCAATT+TGG | - | chr3_3:8090783-8090802 | None:intergenic | 20.0% |
| !!! | TTCTTATGTTAGTTGATTTT+AGG | + | chr3_3:8090806-8090825 | Msa0440610:intron | 20.0% |
| !!! | TATGAAGTACATTAATGTTT+TGG | + | chr3_3:8090857-8090876 | Msa0440610:intron | 20.0% |
| !!! | ATGAAGTACATTAATGTTTT+GGG | + | chr3_3:8090858-8090877 | Msa0440610:intron | 20.0% |
| !! | AAATTACAATTAGAATGAGA+TGG | - | chr3_3:8091705-8091724 | None:intergenic | 20.0% |
| !!! | GATTTTTCTGATATTTTGTT+CGG | + | chr3_3:8091838-8091857 | Msa0440610:intron | 20.0% |
| !!! | ATTTTTCTGATATTTTGTTC+GGG | + | chr3_3:8091839-8091858 | Msa0440610:intron | 20.0% |
| !! | CAACATATTTACATTACAAA+GGG | - | chr3_3:8092111-8092130 | None:intergenic | 20.0% |
| !! | CATACAGTTAATTATCAAAA+AGG | - | chr3_3:8092162-8092181 | None:intergenic | 20.0% |
| ! | AATGAAATTAATGAGCTTGA+AGG | - | chr3_3:8086997-8087016 | None:intergenic | 25.0% |
| !!! | TGATTTTGATGCTTATTTGT+TGG | + | chr3_3:8087126-8087145 | Msa0440610:intron | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | - | chr3_3:8087347-8087366 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | - | chr3_3:8087469-8087488 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | - | chr3_3:8087470-8087489 | None:intergenic | 25.0% |
| ! | TGGATAAACAACTTATTTAC+AGG | + | chr3_3:8087473-8087492 | Msa0440610:intron | 25.0% |
| ! | AAAGAAAACAACAGAATTTG+TGG | + | chr3_3:8087797-8087816 | Msa0440610:intron | 25.0% |
| ! | ACAAATACTTAGTGTATGTT+TGG | + | chr3_3:8087873-8087892 | Msa0440610:intron | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | + | chr3_3:8087940-8087959 | Msa0440610:intron | 25.0% |
| !! | CTTCAAGTTAAAATCAATTC+TGG | - | chr3_3:8087994-8088013 | None:intergenic | 25.0% |
| !!! | TTTAACTTGAAGCTAGAAAT+TGG | + | chr3_3:8088002-8088021 | Msa0440610:intron | 25.0% |
| ! | CACAAATTAATGAGCTAAAA+TGG | - | chr3_3:8088103-8088122 | None:intergenic | 25.0% |
| !!! | TTAATTTGTGTATGTTGGAT+TGG | + | chr3_3:8088113-8088132 | Msa0440610:intron | 25.0% |
| !!! | AATGTTTGAATGAGTTGATA+TGG | + | chr3_3:8088311-8088330 | Msa0440610:intron | 25.0% |
| ! | AACAAAACACACAATTTGTA+TGG | - | chr3_3:8088338-8088357 | None:intergenic | 25.0% |
| !! | TTTTATCTCCTTCATTTTCT+CGG | - | chr3_3:8088426-8088445 | None:intergenic | 25.0% |
| !!! | GTATTTTGATATTGGGATTT+TGG | + | chr3_3:8088459-8088478 | Msa0440610:intron | 25.0% |
| ! | GTCAATAGAAATGAAATTGA+AGG | + | chr3_3:8088498-8088517 | Msa0440610:intron | 25.0% |
| ! | TAAGGATTGAATGATTCAAT+AGG | + | chr3_3:8088883-8088902 | Msa0440610:intron | 25.0% |
| !! | ATGTTTGGTTTCAATTTCAT+GGG | - | chr3_3:8089216-8089235 | None:intergenic | 25.0% |
| !! | TATGTTTGGTTTCAATTTCA+TGG | - | chr3_3:8089217-8089236 | None:intergenic | 25.0% |
| ! | TATTATAAATTTCGGTTGAC+TGG | + | chr3_3:8089474-8089493 | Msa0440610:intron | 25.0% |
| ! | AATGAATCATCTTGCATAAA+AGG | - | chr3_3:8089688-8089707 | None:intergenic | 25.0% |
| !!! | TATTTTTATGTAGGCTAGAA+TGG | + | chr3_3:8090192-8090211 | Msa0440610:intron | 25.0% |
| !! | TTTAAAACAGGATAGTTGTT+TGG | - | chr3_3:8090391-8090410 | None:intergenic | 25.0% |
| !!! | ATCCTGTTTTAAATTAACCA+AGG | + | chr3_3:8090398-8090417 | Msa0440610:intron | 25.0% |
| !! | TGAAGTACATTAATGTTTTG+GGG | + | chr3_3:8090859-8090878 | Msa0440610:intron | 25.0% |
| ! | AAAGATTGAGCAATCAAATA+TGG | - | chr3_3:8090900-8090919 | None:intergenic | 25.0% |
| ! | TTGATGTATTGTTAAGTGAA+TGG | + | chr3_3:8091263-8091282 | Msa0440610:CDS | 25.0% |
| ! | GAATGAGTTCAAATATTTGA+AGG | + | chr3_3:8091586-8091605 | Msa0440610:intron | 25.0% |
| ! | AAAAACACTTGAACAACATT+TGG | + | chr3_3:8091675-8091694 | Msa0440610:intron | 25.0% |
| !! | TTTTTCTGATATTTTGTTCG+GGG | + | chr3_3:8091840-8091859 | Msa0440610:intron | 25.0% |
| ! | ACAAACTATAGAAGAAAAAC+TGG | - | chr3_3:8091918-8091937 | None:intergenic | 25.0% |
| ! | GCAACATATTTACATTACAA+AGG | - | chr3_3:8092112-8092131 | None:intergenic | 25.0% |
| !!! | AAAATTCTAAAACATGTTGC+TGG | + | chr3_3:8092374-8092393 | Msa0440610:CDS | 25.0% |
| ! | TTATAATTAAGAGGCAAAAG+AGG | - | chr3_3:8092910-8092929 | None:intergenic | 25.0% |
| TGTTAGAAATTCTCTCAACT+TGG | + | chr3_3:8086959-8086978 | Msa0440610:CDS | 30.0% | |
| ATAAGCTGTTTATCCAAACA+GGG | - | chr3_3:8087169-8087188 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr3_3:8087170-8087189 | None:intergenic | 30.0% | |
| ACACTTAAGACTGTTTGAAT+TGG | + | chr3_3:8087207-8087226 | Msa0440610:intron | 30.0% | |
| AATTCACATGTTCTCACTAA+CGG | + | chr3_3:8087284-8087303 | Msa0440610:intron | 30.0% | |
| TTAATCACTTATGGTCTGTT+TGG | - | chr3_3:8087415-8087434 | None:intergenic | 30.0% | |
| !!! | CGACTAGTTTTAATCACTTA+TGG | - | chr3_3:8087424-8087443 | None:intergenic | 30.0% |
| !!! | GCACATTTTTTAGTTGGTTT+TGG | + | chr3_3:8087443-8087462 | Msa0440610:intron | 30.0% |
| AACAACTTATTTACAGGTCA+TGG | + | chr3_3:8087479-8087498 | Msa0440610:intron | 30.0% | |
| !!! | ATGCTATATGCTGTTTTCAT+AGG | + | chr3_3:8087584-8087603 | Msa0440610:intron | 30.0% |
| ATCTATTTGAGCTTATCTAC+TGG | - | chr3_3:8087708-8087727 | None:intergenic | 30.0% | |
| CTCAACTGGTAAACATTAAA+GGG | - | chr3_3:8087742-8087761 | None:intergenic | 30.0% | |
| TCTCAACTGGTAAACATTAA+AGG | - | chr3_3:8087743-8087762 | None:intergenic | 30.0% | |
| AGTGAGTGAAAATGAAAGAA+AGG | + | chr3_3:8087774-8087793 | Msa0440610:intron | 30.0% | |
| GAGTTTGATGTTGAGATTAT+GGG | + | chr3_3:8087819-8087838 | Msa0440610:intron | 30.0% | |
| !!! | AATTTTGGTTACTCCAAAAG+TGG | - | chr3_3:8087901-8087920 | None:intergenic | 30.0% |
| ! | GTAACCAAAATTGATTCTAG+AGG | + | chr3_3:8087909-8087928 | Msa0440610:intron | 30.0% |
| !!! | TACACCTCTAGAATCAATTT+TGG | - | chr3_3:8087916-8087935 | None:intergenic | 30.0% |
| CAAGTTAAAATCAATTCTGG+AGG | - | chr3_3:8087991-8088010 | None:intergenic | 30.0% | |
| !! | GCTCATTAATTTGTGTATGT+TGG | + | chr3_3:8088108-8088127 | Msa0440610:intron | 30.0% |
| AGCATATAGCATGCAAATTT+AGG | + | chr3_3:8088254-8088273 | Msa0440610:intron | 30.0% | |
| GCATATAGCATGCAAATTTA+GGG | + | chr3_3:8088255-8088274 | Msa0440610:intron | 30.0% | |
| !! | CAAATTGTGTGTTTTGTTCT+TGG | + | chr3_3:8088340-8088359 | Msa0440610:intron | 30.0% |
| !! | GAGCCATGTAAAATTGATTT+TGG | + | chr3_3:8088388-8088407 | Msa0440610:intron | 30.0% |
| !! | TTCTATTGACTCAATTTCCT+AGG | - | chr3_3:8088488-8088507 | None:intergenic | 30.0% |
| AGTACTTAGCATGCAAATTT+AGG | + | chr3_3:8088547-8088566 | Msa0440610:intron | 30.0% | |
| GTACTTAGCATGCAAATTTA+GGG | + | chr3_3:8088548-8088567 | Msa0440610:intron | 30.0% | |
| GCAAATTTAGGGATTTATGT+TGG | + | chr3_3:8088559-8088578 | Msa0440610:intron | 30.0% | |
| CTTATTGTGTATGTTTGGAT+TGG | + | chr3_3:8088695-8088714 | Msa0440610:intron | 30.0% | |
| !! | AAGTGATTTTGGTGAAATCA+TGG | + | chr3_3:8088718-8088737 | Msa0440610:intron | 30.0% |
| TAGCTTCTTAGTTAGAACTT+AGG | + | chr3_3:8089104-8089123 | Msa0440610:intron | 30.0% | |
| !! | CATTGCTTTTGACTCTAAAA+TGG | - | chr3_3:8089132-8089151 | None:intergenic | 30.0% |
| GTTTCTAAATTCTCGTCAAT+TGG | - | chr3_3:8089260-8089279 | None:intergenic | 30.0% | |
| AAAGGTCAGAACAAGTAAAT+TGG | - | chr3_3:8089388-8089407 | None:intergenic | 30.0% | |
| TTGCTAGCTGAAAATGAAAA+AGG | - | chr3_3:8089406-8089425 | None:intergenic | 30.0% | |
| ! | ATGATGTAACTGACTTCAAT+GGG | + | chr3_3:8089626-8089645 | Msa0440610:CDS | 30.0% |
| AACTTTGGTGAATTTGAAGA+AGG | + | chr3_3:8089715-8089734 | Msa0440610:CDS | 30.0% | |
| GATTTGAAAGACGCAATTTA+CGG | + | chr3_3:8089781-8089800 | Msa0440610:CDS | 30.0% | |
| ATTAACAAGTTCCTTATCTG+AGG | - | chr3_3:8089887-8089906 | None:intergenic | 30.0% | |
| !! | TCAGATAAGGAACTTGTTAA+TGG | + | chr3_3:8089886-8089905 | Msa0440610:CDS | 30.0% |
| !! | CAGATAAGGAACTTGTTAAT+GGG | + | chr3_3:8089887-8089906 | Msa0440610:CDS | 30.0% |
| ATTGATAAGAATCGAGAAGA+AGG | + | chr3_3:8089937-8089956 | Msa0440610:CDS | 30.0% | |
| TTGATAAGAATCGAGAAGAA+GGG | + | chr3_3:8089938-8089957 | Msa0440610:CDS | 30.0% | |
| ATCACATTGCAACACATATT+AGG | + | chr3_3:8089983-8090002 | Msa0440610:CDS | 30.0% | |
| !!! | ACTTCTCATTTTTTGGTTTC+AGG | + | chr3_3:8090086-8090105 | Msa0440610:intron | 30.0% |
| !! | TTGGTTTCAGGTTTGAATAA+AGG | + | chr3_3:8090098-8090117 | Msa0440610:intron | 30.0% |
| ! | CACCTTGGTTAATTTAAAAC+AGG | - | chr3_3:8090403-8090422 | None:intergenic | 30.0% |
| TATATTTCTCAGAAACACCT+TGG | - | chr3_3:8090418-8090437 | None:intergenic | 30.0% | |
| TTATTGAAAATACCGAGAAC+AGG | + | chr3_3:8090466-8090485 | Msa0440610:intron | 30.0% | |
| !!! | GTAATTTTTTCTCCTGTTCT+CGG | - | chr3_3:8090481-8090500 | None:intergenic | 30.0% |
| GAGAAAAAATTACAGTCCAA+GGG | + | chr3_3:8090488-8090507 | Msa0440610:intron | 30.0% | |
| ATTACTGTGGTCTAAATAAC+TGG | - | chr3_3:8090585-8090604 | None:intergenic | 30.0% | |
| AATTACAGTTAGAGTCTACA+GGG | - | chr3_3:8090625-8090644 | None:intergenic | 30.0% | |
| TAATTACAGTTAGAGTCTAC+AGG | - | chr3_3:8090626-8090645 | None:intergenic | 30.0% | |
| TTAGTTAGACAGTTAGTTGT+CGG | - | chr3_3:8090655-8090674 | None:intergenic | 30.0% | |
| CCATACAATAAGTCAAAACA+GGG | - | chr3_3:8090721-8090740 | None:intergenic | 30.0% | |
| ACCATACAATAAGTCAAAAC+AGG | - | chr3_3:8090722-8090741 | None:intergenic | 30.0% | |
| ! | CTATCAATTTGGGTTTGTAT+AGG | - | chr3_3:8090772-8090791 | None:intergenic | 30.0% |
| CTATACAAACCCAAATTGAT+AGG | + | chr3_3:8090770-8090789 | Msa0440610:intron | 30.0% | |
| GAAGAAAAACAAAGTTAGCA+AGG | - | chr3_3:8091096-8091115 | None:intergenic | 30.0% | |
| !! | ATTCAGGTTGCCAAAAATAA+CGG | + | chr3_3:8091124-8091143 | Msa0440610:intron | 30.0% |
| TGTATTGTTAAGTGAATGGA+TGG | + | chr3_3:8091267-8091286 | Msa0440610:CDS | 30.0% | |
| GTATTGTTAAGTGAATGGAT+GGG | + | chr3_3:8091268-8091287 | Msa0440610:CDS | 30.0% | |
| !! | AATAGTTCTAGATGGAATGA+AGG | - | chr3_3:8091407-8091426 | None:intergenic | 30.0% |
| !!! | TCTTGCTATAACGTTTTTTG+TGG | + | chr3_3:8091778-8091797 | Msa0440610:intron | 30.0% |
| !! | TTTCTTCTATAGTTTGTTGC+AGG | + | chr3_3:8091921-8091940 | Msa0440610:intron | 30.0% |
| !! | ATTTTGACATGTCTTGCATT+GGG | + | chr3_3:8091991-8092010 | Msa0440610:CDS | 30.0% |
| TGACATCAACTATAGGATAT+CGG | - | chr3_3:8092040-8092059 | None:intergenic | 30.0% | |
| AACTGGTAACTAAATCTTGA+TGG | - | chr3_3:8092067-8092086 | None:intergenic | 30.0% | |
| ! | GTATGTTTTCAATCATTCCA+AGG | + | chr3_3:8092177-8092196 | Msa0440610:intron | 30.0% |
| !!! | TTTTCTGAAGCACTCAATTT+TGG | - | chr3_3:8092352-8092371 | None:intergenic | 30.0% |
| TAAATCCAGTATCAAACCAT+AGG | - | chr3_3:8092414-8092433 | None:intergenic | 30.0% | |
| !!! | TTTTTCGCTTTGGTTGGTTT+TGG | - | chr3_3:8086733-8086752 | None:intergenic | 35.0% |
| !! | CTTTTTCCTCTTTTTCGCTT+TGG | - | chr3_3:8086743-8086762 | None:intergenic | 35.0% |
| TGTTCTTGTTCAACTGTGTA+TGG | - | chr3_3:8086768-8086787 | None:intergenic | 35.0% | |
| AAGACGAAGAAGAACAACAA+TGG | + | chr3_3:8086808-8086827 | Msa0440610:CDS | 35.0% | |
| AGACGAAGAAGAACAACAAT+GGG | + | chr3_3:8086809-8086828 | Msa0440610:CDS | 35.0% | |
| TAACAGCGTGAAAATCGAAA+TGG | - | chr3_3:8086944-8086963 | None:intergenic | 35.0% | |
| CATTAATTTCATTCGCTCCA+AGG | + | chr3_3:8087004-8087023 | Msa0440610:CDS | 35.0% | |
| AAAGGGTTACTTAGTTACCT+TGG | - | chr3_3:8087024-8087043 | None:intergenic | 35.0% | |
| !!! | GCTTATTTGTTGGTTTTAGC+TGG | + | chr3_3:8087136-8087155 | Msa0440610:intron | 35.0% |
| AGCCAATCCAAACATACTAT+AGG | + | chr3_3:8087367-8087386 | Msa0440610:intron | 35.0% | |
| CACCTATAGTATGTTTGGAT+TGG | - | chr3_3:8087372-8087391 | None:intergenic | 35.0% | |
| AGCTTCACCTATAGTATGTT+TGG | - | chr3_3:8087377-8087396 | None:intergenic | 35.0% | |
| !!! | CTAGTCGCACATTTTTTAGT+TGG | + | chr3_3:8087437-8087456 | Msa0440610:intron | 35.0% |
| !! | GCTGTTTTCATAGGTTATCT+TGG | + | chr3_3:8087593-8087612 | Msa0440610:intron | 35.0% |
| ! | GGTAAACATTAAAGGGCTTT+TGG | - | chr3_3:8087735-8087754 | None:intergenic | 35.0% |
| GGAGTTTGATGTTGAGATTA+TGG | + | chr3_3:8087818-8087837 | Msa0440610:intron | 35.0% | |
| TGTTGAGATTATGGGATTGA+AGG | + | chr3_3:8087827-8087846 | Msa0440610:intron | 35.0% | |
| !! | TGTATGTTTGGTTCCACTTT+TGG | + | chr3_3:8087885-8087904 | Msa0440610:intron | 35.0% |
| ! | GAATGTAAATTTTGTCACCG+TGG | + | chr3_3:8088074-8088093 | Msa0440610:intron | 35.0% |
| ! | ATGAGCTAAAATGGATTCCA+CGG | - | chr3_3:8088094-8088113 | None:intergenic | 35.0% |
| ! | ATGTTGGATTGGAATGAGTT+TGG | + | chr3_3:8088124-8088143 | Msa0440610:intron | 35.0% |
| ! | GAATGAGTTTGGTGAAATCA+TGG | + | chr3_3:8088135-8088154 | Msa0440610:intron | 35.0% |
| !! | ATTGTGTGTTTTGTTCTTGG+TGG | + | chr3_3:8088343-8088362 | Msa0440610:intron | 35.0% |
| TTTCATTGCCGAGAAAATGA+AGG | + | chr3_3:8088415-8088434 | Msa0440610:intron | 35.0% | |
| ! | CTATAAAGAGTGTGTGTGTT+TGG | + | chr3_3:8088629-8088648 | Msa0440610:intron | 35.0% |
| !! | GTTTGGATTGGAAGTGATTT+TGG | + | chr3_3:8088707-8088726 | Msa0440610:intron | 35.0% |
| !! | TGATTTTGGTGAAATCATGG+TGG | + | chr3_3:8088721-8088740 | Msa0440610:intron | 35.0% |
| ! | AACCATAGAAAGTGTGTGTT+TGG | + | chr3_3:8088906-8088925 | Msa0440610:intron | 35.0% |
| AACCAAACACACACTTTCTA+TGG | - | chr3_3:8088911-8088930 | None:intergenic | 35.0% | |
| TCTATCTAGGTGGTGAAAAT+TGG | + | chr3_3:8088930-8088949 | Msa0440610:intron | 35.0% | |
| TGGTGAAAATTGGTTACGAA+TGG | + | chr3_3:8088940-8088959 | Msa0440610:intron | 35.0% | |
| TGAGCATATTTGTGTGAAAG+TGG | + | chr3_3:8089023-8089042 | Msa0440610:intron | 35.0% | |
| GAGCATATTTGTGTGAAAGT+GGG | + | chr3_3:8089024-8089043 | Msa0440610:intron | 35.0% | |
| GGTTGAAGGGTAAAAATTTG+AGG | + | chr3_3:8089045-8089064 | Msa0440610:intron | 35.0% | |
| TTGAGGCTCAAAATCATGTT+TGG | + | chr3_3:8089062-8089081 | Msa0440610:intron | 35.0% | |
| ! | TTTGGTTTCAATTTCATGGG+AGG | - | chr3_3:8089213-8089232 | None:intergenic | 35.0% |
| GAGTGAACTTTGTGTATGTT+TGG | - | chr3_3:8089231-8089250 | None:intergenic | 35.0% | |
| TTTGTTCTGCTTTCATAACC+AGG | + | chr3_3:8089534-8089553 | Msa0440610:intron | 35.0% | |
| GTGATTCTGCAAATCATGTT+TGG | - | chr3_3:8089602-8089621 | None:intergenic | 35.0% | |
| ! | CATGATGTAACTGACTTCAA+TGG | + | chr3_3:8089625-8089644 | Msa0440610:CDS | 35.0% |
| GATTCATTGCTGTACAACTT+TGG | + | chr3_3:8089700-8089719 | Msa0440610:CDS | 35.0% | |
| AGATGAAGAAACTTCAACCA+TGG | + | chr3_3:8089741-8089760 | Msa0440610:CDS | 35.0% | |
| TCAAGATGCCGTGAAAAAAT+TGG | + | chr3_3:8089810-8089829 | Msa0440610:CDS | 35.0% | |
| !! | TAAGGAACTTGTTAATGGGA+AGG | + | chr3_3:8089891-8089910 | Msa0440610:CDS | 35.0% |
| TTTGGGTCTTACAGTTCATT+TGG | + | chr3_3:8090024-8090043 | Msa0440610:CDS | 35.0% | |
| TATCACTTAACATCTCTCGA+TGG | - | chr3_3:8090053-8090072 | None:intergenic | 35.0% | |
| TCGAGAGATGTTAAGTGATA+AGG | + | chr3_3:8090053-8090072 | Msa0440610:CDS | 35.0% | |
| TCTCTAATCTATAGCCTCAT+TGG | + | chr3_3:8090349-8090368 | Msa0440610:intron | 35.0% | |
| GGAGAAAAAATTACAGTCCA+AGG | + | chr3_3:8090487-8090506 | Msa0440610:intron | 35.0% | |
| ACTGGAGCAAAATAGACAAA+AGG | - | chr3_3:8090567-8090586 | None:intergenic | 35.0% | |
| AGGTAGCTAAGTTATTACTG+TGG | - | chr3_3:8090598-8090617 | None:intergenic | 35.0% | |
| ATTACAGTTAGAGTCTACAG+GGG | - | chr3_3:8090624-8090643 | None:intergenic | 35.0% | |
| !!! | CCCTGTTTTGACTTATTGTA+TGG | + | chr3_3:8090718-8090737 | Msa0440610:intron | 35.0% |
| TGGGTTTGTATAGGAAAACA+GGG | - | chr3_3:8090763-8090782 | None:intergenic | 35.0% | |
| TTGGGTTTGTATAGGAAAAC+AGG | - | chr3_3:8090764-8090783 | None:intergenic | 35.0% | |
| TAGACATGTAGTTAAAGAGC+TGG | - | chr3_3:8091070-8091089 | None:intergenic | 35.0% | |
| AAAAGCGAAACTAGAGTCAA+TGG | + | chr3_3:8091160-8091179 | Msa0440610:CDS | 35.0% | |
| AACAATACATCAACACTGTG+AGG | - | chr3_3:8091256-8091275 | None:intergenic | 35.0% | |
| TTGCTATATGAATCCATGCT+TGG | + | chr3_3:8091298-8091317 | Msa0440610:CDS | 35.0% | |
| ATAGTAGCCAAAATAGCAGA+TGG | + | chr3_3:8091538-8091557 | Msa0440610:CDS | 35.0% | |
| !!! | ACGTTAGAATTTTAAGGCTG+TGG | + | chr3_3:8091616-8091635 | Msa0440610:intron | 35.0% |
| !!! | CTTTTAGCTTGGAGTATCTT+AGG | + | chr3_3:8091639-8091658 | Msa0440610:intron | 35.0% |
| !!! | GCTATAACGTTTTTTGTGGT+TGG | + | chr3_3:8091782-8091801 | Msa0440610:intron | 35.0% |
| ! | ATCTCAGAAAAAGAGCATAG+TGG | - | chr3_3:8091808-8091827 | None:intergenic | 35.0% |
| !! | CTATAGTTTGTTGCAGGATT+TGG | + | chr3_3:8091927-8091946 | Msa0440610:intron | 35.0% |
| TTTGTTGCAGGATTTGGAAA+AGG | + | chr3_3:8091933-8091952 | Msa0440610:intron | 35.0% | |
| ! | AGGTACAAGTCTTCCATTTT+GGG | + | chr3_3:8091956-8091975 | Msa0440610:CDS | 35.0% |
| !! | GATTTTGACATGTCTTGCAT+TGG | + | chr3_3:8091990-8092009 | Msa0440610:CDS | 35.0% |
| ! | TTTTGACATGTCTTGCATTG+GGG | + | chr3_3:8091992-8092011 | Msa0440610:CDS | 35.0% |
| GACATCAACTATAGGATATC+GGG | - | chr3_3:8092039-8092058 | None:intergenic | 35.0% | |
| TGGTCTATGACATCAACTAT+AGG | - | chr3_3:8092047-8092066 | None:intergenic | 35.0% | |
| ! | TTCCACTATTCTTCAGGTTT+GGG | + | chr3_3:8092085-8092104 | Msa0440610:intron | 35.0% |
| !! | TATGAAACTTGCTAGATCCT+TGG | - | chr3_3:8092197-8092216 | None:intergenic | 35.0% |
| ! | AAAACATGTTGCTGGTGTTA+TGG | + | chr3_3:8092382-8092401 | Msa0440610:CDS | 35.0% |
| GATTTACAACTAGATTCTGC+CGG | + | chr3_3:8092428-8092447 | Msa0440610:CDS | 35.0% | |
| ATTTACAACTAGATTCTGCC+GGG | + | chr3_3:8092429-8092448 | Msa0440610:CDS | 35.0% | |
| CACAGACAATCTTAACTTTC+CGG | + | chr3_3:8092503-8092522 | Msa0440610:CDS | 35.0% | |
| ACAGACAATCTTAACTTTCC+GGG | + | chr3_3:8092504-8092523 | Msa0440610:CDS | 35.0% | |
| ATTGGATTTGGGGAAGAAAA+CGG | + | chr3_3:8092538-8092557 | Msa0440610:CDS | 35.0% | |
| !!! | TCAACTTTTTTCTCTGCAGT+AGG | + | chr3_3:8092714-8092733 | Msa0440610:CDS | 35.0% |
| AATATGTTCGGCAGTAAAAC+AGG | - | chr3_3:8092776-8092795 | None:intergenic | 35.0% | |
| ! | TGTTTTACTGCCGAACATAT+TGG | + | chr3_3:8092775-8092794 | Msa0440610:three_prime_UTR | 35.0% |
| GACAGAATATCAAGTACATG+TGG | - | chr3_3:8092828-8092847 | None:intergenic | 35.0% | |
| TCTATCCTGTTGTGTTAGTT+TGG | + | chr3_3:8092859-8092878 | Msa0440610:three_prime_UTR | 35.0% | |
| TTTGACCAAACTAACACAAC+AGG | - | chr3_3:8092867-8092886 | None:intergenic | 35.0% | |
| AACCAACCAAAGCGAAAAAG+AGG | + | chr3_3:8086734-8086753 | Msa0440610:CDS | 40.0% | |
| !! | TTCCTCTTTTTCGCTTTGGT+TGG | - | chr3_3:8086739-8086758 | None:intergenic | 40.0% |
| AAGAACAACAATGGGACGAT+TGG | + | chr3_3:8086817-8086836 | Msa0440610:CDS | 40.0% | |
| AGAACAACAATGGGACGATT+GGG | + | chr3_3:8086818-8086837 | Msa0440610:CDS | 40.0% | |
| !! | AGAAGCACTATGTTGGAACA+AGG | - | chr3_3:8086916-8086935 | None:intergenic | 40.0% |
| GAAGAGAAACCCATTTGCAA+TGG | + | chr3_3:8087091-8087110 | Msa0440610:intron | 40.0% | |
| CACTTATGGTCTGTTTGGAT+TGG | - | chr3_3:8087410-8087429 | None:intergenic | 40.0% | |
| CTTTCTCGCAATTTCTCAAC+TGG | - | chr3_3:8087756-8087775 | None:intergenic | 40.0% | |
| AGATGTGATTCCACCAAACT+CGG | + | chr3_3:8088217-8088236 | Msa0440610:intron | 40.0% | |
| !! | TATTGGGATTTTGGAGACCT+AGG | + | chr3_3:8088468-8088487 | Msa0440610:intron | 40.0% |
| ! | AGTTTTTGCGAAAATCGCAG+TGG | + | chr3_3:8088763-8088782 | Msa0440610:intron | 40.0% |
| GTCTGGATTGACAATGAGTT+TGG | - | chr3_3:8088804-8088823 | None:intergenic | 40.0% | |
| TTGCATGCTAAATGCATGTC+TGG | - | chr3_3:8088821-8088840 | None:intergenic | 40.0% | |
| !! | GTGTGTGTTTGGTTCTATCT+AGG | + | chr3_3:8088917-8088936 | Msa0440610:intron | 40.0% |
| !! | TGTGTTTGGTTCTATCTAGG+TGG | + | chr3_3:8088920-8088939 | Msa0440610:intron | 40.0% |
| !! | TTTGTGTGAAAGTGGGTTGA+AGG | + | chr3_3:8089031-8089050 | Msa0440610:intron | 40.0% |
| !! | TTGTGTGAAAGTGGGTTGAA+GGG | + | chr3_3:8089032-8089051 | Msa0440610:intron | 40.0% |
| AGGCTCAAAATCATGTTTGG+AGG | + | chr3_3:8089065-8089084 | Msa0440610:intron | 40.0% | |
| TCAATGGGATTAAGCCTTTG+TGG | + | chr3_3:8089641-8089660 | Msa0440610:CDS | 40.0% | |
| CAATGGGATTAAGCCTTTGT+GGG | + | chr3_3:8089642-8089661 | Msa0440610:CDS | 40.0% | |
| TATTTATCGTCGTCCCACAA+AGG | - | chr3_3:8089658-8089677 | None:intergenic | 40.0% | |
| CATGGATGAAGATCTTGTGA+GGG | + | chr3_3:8089759-8089778 | Msa0440610:CDS | 40.0% | |
| AGTTCCTTATCTGAGGAACT+AGG | - | chr3_3:8089880-8089899 | None:intergenic | 40.0% | |
| TGTGTTGCAATGTGATTCTG+AGG | - | chr3_3:8089979-8089998 | None:intergenic | 40.0% | |
| TAGGCTAGAATGGATGCTTA+CGG | + | chr3_3:8090202-8090221 | Msa0440610:intron | 40.0% | |
| AAGAATCCCTCTCTGCTAAA+TGG | + | chr3_3:8090238-8090257 | Msa0440610:CDS | 40.0% | |
| TTACAGTTAGAGTCTACAGG+GGG | - | chr3_3:8090623-8090642 | None:intergenic | 40.0% | |
| GTATAGGAAAACAGGGTTAC+TGG | - | chr3_3:8090756-8090775 | None:intergenic | 40.0% | |
| TGGTATAGAAGCTACTAAGC+AGG | - | chr3_3:8091050-8091069 | None:intergenic | 40.0% | |
| !! | CAGCAAGAGACCGTTATTTT+TGG | - | chr3_3:8091137-8091156 | None:intergenic | 40.0% |
| CAATTTCTTCAACCATGCCA+TGG | - | chr3_3:8091213-8091232 | None:intergenic | 40.0% | |
| ACTCACAATAGTTGCTGTGT+CGG | - | chr3_3:8091377-8091396 | None:intergenic | 40.0% | |
| TAGTGCACTATTGAGAACAC+TGG | - | chr3_3:8091439-8091458 | None:intergenic | 40.0% | |
| !! | TTTTGCTGTAGTAGCTGTTG+CGG | + | chr3_3:8091510-8091529 | Msa0440610:CDS | 40.0% |
| ! | GAGGTACAAGTCTTCCATTT+TGG | + | chr3_3:8091955-8091974 | Msa0440610:CDS | 40.0% |
| TCACAAACGTTCTCCCAAAA+TGG | - | chr3_3:8091972-8091991 | None:intergenic | 40.0% | |
| TACCAGTTCCACTATTCTTC+AGG | + | chr3_3:8092079-8092098 | Msa0440610:CDS | 40.0% | |
| ! | AACCTGAAGAATAGTGGAAC+TGG | - | chr3_3:8092084-8092103 | None:intergenic | 40.0% |
| ! | GTTCCACTATTCTTCAGGTT+TGG | + | chr3_3:8092084-8092103 | Msa0440610:intron | 40.0% |
| GTTGTCCTATGGTTTGATAC+TGG | + | chr3_3:8092406-8092425 | Msa0440610:CDS | 40.0% | |
| ! | AATGTGTTTTCGGAGTGCAA+GGG | - | chr3_3:8092480-8092499 | None:intergenic | 40.0% |
| ! | GTCTGTGACCAATGTGTTTT+CGG | - | chr3_3:8092490-8092509 | None:intergenic | 40.0% |
| AACCCATTGCCATTGGATTT+GGG | + | chr3_3:8092527-8092546 | Msa0440610:CDS | 40.0% | |
| ! | GTTTTCTTCCCCAAATCCAA+TGG | - | chr3_3:8092539-8092558 | None:intergenic | 40.0% |
| TTGGATTTGGGGAAGAAAAC+GGG | + | chr3_3:8092539-8092558 | Msa0440610:CDS | 40.0% | |
| GCAAATCAATCTTCACAGCA+GGG | - | chr3_3:8092597-8092616 | None:intergenic | 40.0% | |
| TGCAGAGAAAAAAGTTGAGC+AGG | - | chr3_3:8092712-8092731 | None:intergenic | 40.0% | |
| !!! | TTGGTTGGTTTTGGAAGGCA+TGG | - | chr3_3:8086724-8086743 | None:intergenic | 45.0% |
| !!! | TCGCTTTGGTTGGTTTTGGA+AGG | - | chr3_3:8086729-8086748 | None:intergenic | 45.0% |
| GACGATTGGGAAGAAAACGA+AGG | + | chr3_3:8086831-8086850 | Msa0440610:CDS | 45.0% | |
| ! | GGAAGTGCAGGAACTGAAAT+TGG | - | chr3_3:8086895-8086914 | None:intergenic | 45.0% |
| ! | ATGTTGGAACAAGGAAGTGC+AGG | - | chr3_3:8086907-8086926 | None:intergenic | 45.0% |
| !! | GGTGAAGAGAAGCACTATGT+TGG | - | chr3_3:8086923-8086942 | None:intergenic | 45.0% |
| !!! | AGCTGGTTTTAGACCCTGTT+TGG | + | chr3_3:8087153-8087172 | Msa0440610:intron | 45.0% |
| !!! | TAGTTGGTTTTGGCCCTGTT+TGG | + | chr3_3:8087453-8087472 | Msa0440610:intron | 45.0% |
| AGGATTAACACCGAGTTTGG+TGG | - | chr3_3:8088230-8088249 | None:intergenic | 45.0% | |
| !! | ACCAAACTCGGTGTTAATCC+TGG | + | chr3_3:8088229-8088248 | Msa0440610:intron | 45.0% |
| TTGCATGCTATATGCTTGCC+AGG | - | chr3_3:8088250-8088269 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr3_3:8089344-8089363 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr3_3:8089345-8089364 | None:intergenic | 45.0% |
| TTGCGTGCACATGTTGCTAA+CGG | + | chr3_3:8089507-8089526 | Msa0440610:intron | 45.0% | |
| GTTCTGCTTTCATAACCAGG+TGG | + | chr3_3:8089537-8089556 | Msa0440610:intron | 45.0% | |
| CCTCACAAGATCTTCATCCA+TGG | - | chr3_3:8089761-8089780 | None:intergenic | 45.0% | |
| CCATGGATGAAGATCTTGTG+AGG | + | chr3_3:8089758-8089777 | Msa0440610:CDS | 45.0% | |
| CTTGCCTAGTTCCTCAGATA+AGG | + | chr3_3:8089873-8089892 | Msa0440610:CDS | 45.0% | |
| GTTAATGGGAAGGACTCAAG+AGG | + | chr3_3:8089901-8089920 | Msa0440610:CDS | 45.0% | |
| AGGCTAGAATGGATGCTTAC+GGG | + | chr3_3:8090203-8090222 | Msa0440610:intron | 45.0% | |
| ACAGCACCATTTAGCAGAGA+GGG | - | chr3_3:8090247-8090266 | None:intergenic | 45.0% | |
| !! | GCTAAATGGTGCTGTGGTTA+TGG | + | chr3_3:8090252-8090271 | Msa0440610:CDS | 45.0% |
| TCAAGTACGTTTCTCACCTG+AGG | - | chr3_3:8090300-8090319 | None:intergenic | 45.0% | |
| !!! | AGCCTTTTTTCAGCTCAAGC+AGG | + | chr3_3:8090956-8090975 | Msa0440610:intron | 45.0% |
| !!! | GCCTTTTTTCAGCTCAAGCA+GGG | + | chr3_3:8090957-8090976 | Msa0440610:intron | 45.0% |
| !!! | CCTTTTTTCAGCTCAAGCAG+GGG | + | chr3_3:8090958-8090977 | Msa0440610:CDS | 45.0% |
| TTCAAGGGTCATTGCAGTTG+AGG | + | chr3_3:8090982-8091001 | Msa0440610:CDS | 45.0% | |
| AGTTGAGGCTAGTACCAAGA+TGG | + | chr3_3:8090997-8091016 | Msa0440610:CDS | 45.0% | |
| AGAGTCAATGGCAACCAGAA+AGG | + | chr3_3:8091172-8091191 | Msa0440610:CDS | 45.0% | |
| !! | ATAAAGCACTGAGCCAAGCA+TGG | - | chr3_3:8091314-8091333 | None:intergenic | 45.0% |
| CTCACAATAGTTGCTGTGTC+GGG | - | chr3_3:8091376-8091395 | None:intergenic | 45.0% | |
| TCTAGATGGAATGAAGGCAG+AGG | - | chr3_3:8091401-8091420 | None:intergenic | 45.0% | |
| !! | GTCTGCACCATCTGCTATTT+TGG | - | chr3_3:8091548-8091567 | None:intergenic | 45.0% |
| !! | TAAGGCTGTGGCTTTTAGCT+TGG | + | chr3_3:8091628-8091647 | Msa0440610:intron | 45.0% |
| GTTGCAGGATTTGGAAAAGG+AGG | + | chr3_3:8091936-8091955 | Msa0440610:intron | 45.0% | |
| ATCCTACCAGACCTTTGACT+TGG | + | chr3_3:8092276-8092295 | Msa0440610:intron | 45.0% | |
| CTTCATGGTAGCCAAGTCAA+AGG | - | chr3_3:8092290-8092309 | None:intergenic | 45.0% | |
| ! | TACCATGAAGCACCATGAAG+TGG | + | chr3_3:8092300-8092319 | Msa0440610:CDS | 45.0% |
| ATCCACTTCATGGTGCTTCA+TGG | - | chr3_3:8092305-8092324 | None:intergenic | 45.0% | |
| TTGCGGTGAAATCCACTTCA+TGG | - | chr3_3:8092315-8092334 | None:intergenic | 45.0% | |
| TTTCACCGCAACAGCTTCTT+TGG | + | chr3_3:8092324-8092343 | Msa0440610:CDS | 45.0% | |
| TGGTTCCAAAGAAGCTGTTG+CGG | - | chr3_3:8092332-8092351 | None:intergenic | 45.0% | |
| ! | GGTGTTATGGAGTTGTCCTA+TGG | + | chr3_3:8092395-8092414 | Msa0440610:CDS | 45.0% |
| ! | ATGTGTTTTCGGAGTGCAAG+GGG | - | chr3_3:8092479-8092498 | None:intergenic | 45.0% |
| ! | CAATGTGTTTTCGGAGTGCA+AGG | - | chr3_3:8092481-8092500 | None:intergenic | 45.0% |
| CTTGCACTCCGAAAACACAT+TGG | + | chr3_3:8092479-8092498 | Msa0440610:CDS | 45.0% | |
| GAACCCATTGCCATTGGATT+TGG | + | chr3_3:8092526-8092545 | Msa0440610:CDS | 45.0% | |
| ACCCATTGCCATTGGATTTG+GGG | + | chr3_3:8092528-8092547 | Msa0440610:CDS | 45.0% | |
| TCCCCAAATCCAATGGCAAT+GGG | - | chr3_3:8092532-8092551 | None:intergenic | 45.0% | |
| TTCCCCAAATCCAATGGCAA+TGG | - | chr3_3:8092533-8092552 | None:intergenic | 45.0% | |
| GGAAGAAAACGGGACAAAAC+CGG | + | chr3_3:8092549-8092568 | Msa0440610:CDS | 45.0% | |
| GGGACAAAACCGGAAACAAT+TGG | + | chr3_3:8092559-8092578 | Msa0440610:CDS | 45.0% | |
| CCTTCAGTGCCAATTGTTTC+CGG | - | chr3_3:8092571-8092590 | None:intergenic | 45.0% | |
| CGCAAATCAATCTTCACAGC+AGG | - | chr3_3:8092598-8092617 | None:intergenic | 45.0% | |
| !! | TCGCAGCATTGACATTTCCA+TGG | + | chr3_3:8092645-8092664 | Msa0440610:CDS | 45.0% |
| !! | TTAATAAATCAATAATAATT+TGG | - | chr3_3:8090163-8090182 | None:intergenic | 5.0% |
| GCCAGGATTAACACCGAGTT+TGG | - | chr3_3:8088233-8088252 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr3_3:8089340-8089359 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr3_3:8089346-8089365 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr3_3:8089343-8089362 | Msa0440610:intron | 50.0% | |
| GTGCACATGTTGCTAACGGT+TGG | + | chr3_3:8089511-8089530 | Msa0440610:intron | 50.0% | |
| GAGAGCAGATGTTGGAGTTG+TGG | + | chr3_3:8089562-8089581 | Msa0440610:CDS | 50.0% | |
| CACAGCACCATTTAGCAGAG+AGG | - | chr3_3:8090248-8090267 | None:intergenic | 50.0% | |
| ! | CTCTCTGCTAAATGGTGCTG+TGG | + | chr3_3:8090246-8090265 | Msa0440610:CDS | 50.0% |
| ! | GACGAGAGCATAGTCCAATG+AGG | - | chr3_3:8090366-8090385 | None:intergenic | 50.0% |
| AAGGGATTCCCCTTACAGCA+GGG | + | chr3_3:8090506-8090525 | Msa0440610:intron | 50.0% | |
| AGCAAAAGCCCTGCTGTAAG+GGG | - | chr3_3:8090517-8090536 | None:intergenic | 50.0% | |
| GAGCAAAAGCCCTGCTGTAA+GGG | - | chr3_3:8090518-8090537 | None:intergenic | 50.0% | |
| TGAGCAAAAGCCCTGCTGTA+AGG | - | chr3_3:8090519-8090538 | None:intergenic | 50.0% | |
| GTTAGAGTCTACAGGGGGAT+AGG | - | chr3_3:8090618-8090637 | None:intergenic | 50.0% | |
| CCCCTGCTTGAGCTGAAAAA+AGG | - | chr3_3:8090961-8090980 | None:intergenic | 50.0% | |
| TAGTACCAAGATGGCAGCAG+TGG | + | chr3_3:8091006-8091025 | Msa0440610:CDS | 50.0% | |
| CCACTTCTACGACTCCTTTC+TGG | - | chr3_3:8091189-8091208 | None:intergenic | 50.0% | |
| CCAGAAAGGAGTCGTAGAAG+TGG | + | chr3_3:8091186-8091205 | Msa0440610:CDS | 50.0% | |
| CAGTGCTTTATGCACGTGAC+CGG | + | chr3_3:8091323-8091342 | Msa0440610:CDS | 50.0% | |
| ! | GTGACCGGTATTTGAAGCCT+GGG | + | chr3_3:8091338-8091357 | Msa0440610:intron | 50.0% |
| ! | TGACCGGTATTTGAAGCCTG+GGG | + | chr3_3:8091339-8091358 | Msa0440610:intron | 50.0% |
| AGTTGCTGTGTCGGGAAGAA+TGG | - | chr3_3:8091368-8091387 | None:intergenic | 50.0% | |
| TGACATGTCTTGCATTGGGG+AGG | + | chr3_3:8091995-8092014 | Msa0440610:CDS | 50.0% | |
| GGCCCAAACCTGAAGAATAG+TGG | - | chr3_3:8092090-8092109 | None:intergenic | 50.0% | |
| AGCCAAGTCAAAGGTCTGGT+AGG | - | chr3_3:8092281-8092300 | None:intergenic | 50.0% | |
| TGGTAGCCAAGTCAAAGGTC+TGG | - | chr3_3:8092285-8092304 | None:intergenic | 50.0% | |
| ! | ATCCAATGGCAATGGGTTCC+CGG | - | chr3_3:8092525-8092544 | None:intergenic | 50.0% |
| ! | CCGGAAACAATTGGCACTGA+AGG | + | chr3_3:8092568-8092587 | Msa0440610:CDS | 50.0% |
| TGCTGCGATGCTCAGTAGAA+CGG | - | chr3_3:8092633-8092652 | None:intergenic | 50.0% | |
| GACATTTCCATGGAAGCTGC+TGG | + | chr3_3:8092655-8092674 | Msa0440610:CDS | 50.0% | |
| ACTTACACCAGCAGCTTCCA+TGG | - | chr3_3:8092665-8092684 | None:intergenic | 50.0% | |
| CTGGTGTAAGTCCTGATGGT+CGG | + | chr3_3:8092674-8092693 | Msa0440610:CDS | 50.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr3_3:8089332-8089351 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr3_3:8089331-8089350 | Msa0440610:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr3_3:8089332-8089351 | Msa0440610:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr3_3:8089338-8089357 | Msa0440610:intron | 55.0% | |
| AACATCTGCTCTCTGCCACC+TGG | - | chr3_3:8089555-8089574 | None:intergenic | 55.0% | |
| AGGTGGCAGAGAGCAGATGT+TGG | + | chr3_3:8089554-8089573 | Msa0440610:intron | 55.0% | |
| ! | GGTGCTGTGGTTATGGACGT+CGG | + | chr3_3:8090259-8090278 | Msa0440610:CDS | 55.0% |
| CTGCTGTAAGGGGAATCCCT+TGG | - | chr3_3:8090507-8090526 | None:intergenic | 55.0% | |
| CAAGGGATTCCCCTTACAGC+AGG | + | chr3_3:8090505-8090524 | Msa0440610:intron | 55.0% | |
| AGCTCAAGCAGGGGCTTCAA+GGG | + | chr3_3:8090967-8090986 | Msa0440610:CDS | 55.0% | |
| AGATGCCACTGCTGCCATCT+TGG | - | chr3_3:8091014-8091033 | None:intergenic | 55.0% | |
| GGAGTCGTAGAAGTGGTCCA+TGG | + | chr3_3:8091193-8091212 | Msa0440610:CDS | 55.0% | |
| CGTAGAAGTGGTCCATGGCA+TGG | + | chr3_3:8091198-8091217 | Msa0440610:CDS | 55.0% | |
| ! | CGTGACCGGTATTTGAAGCC+TGG | + | chr3_3:8091337-8091356 | Msa0440610:intron | 55.0% |
| ! | GACCGGTATTTGAAGCCTGG+GGG | + | chr3_3:8091340-8091359 | Msa0440610:intron | 55.0% |
| CACCCCCAGGCTTCAAATAC+CGG | - | chr3_3:8091345-8091364 | None:intergenic | 55.0% | |
| ACATGTCCTGCAGCAGCCAT+GGG | - | chr3_3:8091478-8091497 | None:intergenic | 55.0% | |
| TACATGTCCTGCAGCAGCCA+TGG | - | chr3_3:8091479-8091498 | None:intergenic | 55.0% | |
| ACAGCACAGCTGGTGTATCC+CGG | - | chr3_3:8092450-8092469 | None:intergenic | 55.0% | |
| TTCCGGGAACCCATTGCCAT+TGG | + | chr3_3:8092520-8092539 | Msa0440610:CDS | 55.0% | |
| GCTGCTGGTGTAAGTCCTGA+TGG | + | chr3_3:8092670-8092689 | Msa0440610:CDS | 55.0% | |
| ! | GTGGTTATGGACGTCGGCTG+TGG | + | chr3_3:8090265-8090284 | Msa0440610:CDS | 60.0% |
| ! | ATGGACGTCGGCTGTGGAAC+TGG | + | chr3_3:8090271-8090290 | Msa0440610:CDS | 60.0% |
| GCTGTGGAACTGGCATCCTC+AGG | + | chr3_3:8090281-8090300 | Msa0440610:CDS | 60.0% | |
| CAGCTCAAGCAGGGGCTTCA+AGG | + | chr3_3:8090966-8090985 | Msa0440610:CDS | 60.0% | |
| GATGGCAGCAGTGGCATCTC+AGG | + | chr3_3:8091015-8091034 | Msa0440610:CDS | 60.0% | |
| TAGCGTAGCAGAGCAGCCCA+TGG | + | chr3_3:8091459-8091478 | Msa0440610:intron | 60.0% | |
| GGGGATGTTGACAGCACAGC+TGG | - | chr3_3:8092460-8092479 | None:intergenic | 60.0% | |
| CAAGTGCGTCTCCGACCATC+AGG | - | chr3_3:8092688-8092707 | None:intergenic | 60.0% | |
| CTGATGGTCGGAGACGCACT+TGG | + | chr3_3:8092686-8092705 | Msa0440610:CDS | 60.0% | |
| TCGGGAAGAATGGCACCCCC+AGG | - | chr3_3:8091358-8091377 | None:intergenic | 65.0% | |
| GAGCAGCCCATGGCTGCTGC+AGG | + | chr3_3:8091469-8091488 | Msa0440610:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 8086700 | 8092932 | 8086700 | ID=Msa0440610;Name=Msa0440610 |
| chr3_3 | mRNA | 8086700 | 8092932 | 8086700 | ID=Msa0440610-mRNA-1;Parent=Msa0440610;Name=Msa0440610-mRNA-1;_AED=0.09;_eAED=0.09;_QI=23|0.71|0.62|0.87|1|1|8|197|639 |
| chr3_3 | exon | 8086700 | 8087025 | 8086700 | ID=Msa0440610-mRNA-1:exon:1719;Parent=Msa0440610-mRNA-1 |
| chr3_3 | exon | 8089556 | 8090074 | 8089556 | ID=Msa0440610-mRNA-1:exon:1720;Parent=Msa0440610-mRNA-1 |
| chr3_3 | exon | 8090205 | 8090302 | 8090205 | ID=Msa0440610-mRNA-1:exon:1721;Parent=Msa0440610-mRNA-1 |
| chr3_3 | exon | 8090958 | 8091036 | 8090958 | ID=Msa0440610-mRNA-1:exon:1722;Parent=Msa0440610-mRNA-1 |
| chr3_3 | exon | 8091130 | 8091344 | 8091130 | ID=Msa0440610-mRNA-1:exon:1723;Parent=Msa0440610-mRNA-1 |
| chr3_3 | exon | 8091462 | 8091559 | 8091462 | ID=Msa0440610-mRNA-1:exon:1724;Parent=Msa0440610-mRNA-1 |
| chr3_3 | exon | 8091943 | 8092100 | 8091943 | ID=Msa0440610-mRNA-1:exon:1725;Parent=Msa0440610-mRNA-1 |
| chr3_3 | exon | 8092286 | 8092932 | 8092286 | ID=Msa0440610-mRNA-1:exon:1726;Parent=Msa0440610-mRNA-1 |
| chr3_3 | five_prime_UTR | 8086700 | 8086722 | 8086700 | ID=Msa0440610-mRNA-1:five_prime_utr;Parent=Msa0440610-mRNA-1 |
| chr3_3 | CDS | 8086723 | 8087025 | 8086723 | ID=Msa0440610-mRNA-1:cds;Parent=Msa0440610-mRNA-1 |
| chr3_3 | CDS | 8089556 | 8090074 | 8089556 | ID=Msa0440610-mRNA-1:cds;Parent=Msa0440610-mRNA-1 |
| chr3_3 | CDS | 8090205 | 8090302 | 8090205 | ID=Msa0440610-mRNA-1:cds;Parent=Msa0440610-mRNA-1 |
| chr3_3 | CDS | 8090958 | 8091036 | 8090958 | ID=Msa0440610-mRNA-1:cds;Parent=Msa0440610-mRNA-1 |
| chr3_3 | CDS | 8091130 | 8091344 | 8091130 | ID=Msa0440610-mRNA-1:cds;Parent=Msa0440610-mRNA-1 |
| chr3_3 | CDS | 8091462 | 8091559 | 8091462 | ID=Msa0440610-mRNA-1:cds;Parent=Msa0440610-mRNA-1 |
| chr3_3 | CDS | 8091943 | 8092100 | 8091943 | ID=Msa0440610-mRNA-1:cds;Parent=Msa0440610-mRNA-1 |
| chr3_3 | CDS | 8092286 | 8092735 | 8092286 | ID=Msa0440610-mRNA-1:cds;Parent=Msa0440610-mRNA-1 |
| chr3_3 | three_prime_UTR | 8092736 | 8092932 | 8092736 | ID=Msa0440610-mRNA-1:three_prime_utr;Parent=Msa0440610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
