AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047160 MtrunA17_Chr4g0071621 94.203 414 19 2 1 414 1 409 0.0 692
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047160 AT5G57120.2 52.518 139 52 3 283 414 168 299 1.25e-32 125

Find 96 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTCTGTTCAGAGTTT+TGG 0.148789 1_1:+79866046 None:intergenic
TCATCTTCTGTTCACTGGTT+AGG 0.212343 1_1:+79866201 None:intergenic
AGAGATGTGCCGCAAATATT+TGG 0.244302 1_1:-79864458 Msa0047160:CDS
AGAAAATATGAGTGAATCTA+AGG 0.253918 1_1:-79863013 Msa0047160:CDS
ATAGGTCCCACGTTTCTTCT+TGG 0.273117 1_1:+79860686 None:intergenic
TTGATACCTGATGGATTTGC+AGG 0.274555 1_1:+79866141 None:intergenic
TTTAGAATCTTTCTTCTCTT+CGG 0.275506 1_1:+79863119 None:intergenic
CCAATCAATTGCTCTTTACT+TGG 0.280678 1_1:-79866010 Msa0047160:CDS
CGACCAATTTCTAAAGAAAA+TGG 0.291399 1_1:-79863087 Msa0047160:CDS
TTAGAATCTTTCTTCTCTTC+GGG 0.299169 1_1:+79863120 None:intergenic
TTGAAACAATATTGTTCATT+TGG 0.312566 1_1:-79860493 Msa0047160:three_prime_UTR
CATCTTCTGTTCACTGGTTA+GGG 0.312876 1_1:+79866202 None:intergenic
TTCTTCATCTGCCTTTATTT+CGG 0.320467 1_1:+79863053 None:intergenic
GCTTCTTCATTTGTTGCATC+GGG 0.340551 1_1:+79863147 None:intergenic
ATAGATGCCAAAGTTGAAAA+TGG 0.340694 1_1:-79863258 Msa0047160:CDS
TGCTTCTTCATTTGTTGCAT+CGG 0.340775 1_1:+79863146 None:intergenic
ATTTGTTGATGAGAGGCTTC+AGG 0.356972 1_1:-79861266 Msa0047160:CDS
AGAAGAAACGTGGGACCTAT+AGG 0.367724 1_1:-79860683 Msa0047160:CDS
GAAGAAACGTGGGACCTATA+GGG 0.375824 1_1:-79860682 Msa0047160:CDS
CCAAGTAAAGAGCAATTGAT+TGG 0.380181 1_1:+79866010 None:intergenic
GGCTTCAGGATAACTCATAT+TGG 0.387596 1_1:-79861252 Msa0047160:CDS
TGCTCTTTACTTGGAACGCT+CGG 0.400334 1_1:-79866001 Msa0047160:CDS
CCACAGTTGGTGACTCCAAT+TGG 0.405640 1_1:+79863454 None:intergenic
GATGGCGCCGAGAGTGGTTA+TGG 0.413963 1_1:-79861137 Msa0047160:CDS
CGTTGAAATGCTGCCTTCAC+TGG 0.414815 1_1:+79861310 None:intergenic
CTCAGCACCATTATCAACTT+TGG 0.421101 1_1:+79863392 None:intergenic
TGAACAAGATACCGAAATAA+AGG 0.423978 1_1:-79863064 Msa0047160:CDS
ACAGATGCCAAAGTTGATAA+TGG 0.427492 1_1:-79863399 Msa0047160:CDS
AGAAGATGAATTAGAGTGGT+TGG 0.430448 1_1:-79866187 Msa0047160:five_prime_UTR
CTAATTCATCTTCTGTTCAC+TGG 0.437183 1_1:+79866196 None:intergenic
CAAACGGGCTTTCTGAGAAT+GGG 0.440258 1_1:-79862969 Msa0047160:CDS
GCAAAAGCAGAAGAAATTCT+TGG 0.442256 1_1:-79861113 Msa0047160:CDS
TCAAACGGGCTTTCTGAGAA+TGG 0.443793 1_1:-79862970 Msa0047160:CDS
GACCAATCAGCAAAATCAAA+CGG 0.445985 1_1:-79862985 Msa0047160:CDS
ACCATGTTTCCAAATATTTG+CGG 0.446237 1_1:+79864449 None:intergenic
GCTTCAGGATAACTCATATT+GGG 0.455100 1_1:-79861251 Msa0047160:CDS
ATCAATAAGTCCACCCCTAT+AGG 0.468521 1_1:+79860668 None:intergenic
GGATTTGCAGGCATACGAAA+AGG 0.471205 1_1:+79866153 None:intergenic
TTATTCAGATGAGGAGTGAC+TGG 0.475043 1_1:-79860619 Msa0047160:exon
GGAGTGAAAGTGAAGAGGGT+TGG 0.475645 1_1:+79866111 None:intergenic
CGTATGCCTGCAAATCCATC+AGG 0.484539 1_1:-79866147 Msa0047160:CDS
AACAATAAGTCAAATATTGA+AGG 0.491836 1_1:-79863336 Msa0047160:CDS
TTCATCTCTCTTCAGTAGCA+AGG 0.496685 1_1:-79863770 Msa0047160:intron
ACCAATCAGCAAAATCAAAC+GGG 0.497516 1_1:-79862984 Msa0047160:CDS
AGTTACAGAAAATAAAGTTA+AGG 0.498586 1_1:-79863292 Msa0047160:CDS
GAAGATGAATTAGAGTGGTT+GGG 0.506631 1_1:-79866186 Msa0047160:five_prime_UTR
AAGATAAGTCAATTAGTGAA+GGG 0.507809 1_1:-79863194 Msa0047160:CDS
TAATGTGGAAGACAACCAAT+TGG 0.510929 1_1:-79863469 Msa0047160:CDS
AAAGATAAGTCAATTAGTGA+AGG 0.516572 1_1:-79863195 Msa0047160:CDS
CTGCAGGATGGCGCCGAGAG+TGG 0.518486 1_1:-79861143 Msa0047160:intron
AATAATTAAACTTAACTGAG+TGG 0.520249 1_1:+79860637 None:intergenic
GCTCTTTACTTGGAACGCTC+GGG 0.525363 1_1:-79866000 Msa0047160:CDS
GATGAATTAGAGTGGTTGGG+TGG 0.531287 1_1:-79866183 Msa0047160:five_prime_UTR
GGGGATGCAAAAGAGCAGAT+TGG 0.539281 1_1:-79863174 Msa0047160:CDS
GGTTACAGAAAACAAAGTTA+AGG 0.544978 1_1:-79863433 Msa0047160:CDS
ACAATAAGTCAAATATTGAA+GGG 0.546642 1_1:-79863335 Msa0047160:CDS
GAAATTCTTGGTCAAGTCAG+AGG 0.547509 1_1:-79861101 Msa0047160:CDS
GCCGCAAATATTTGGAAACA+TGG 0.552046 1_1:-79864450 Msa0047160:intron
TAAGTTTAATTATTCAGATG+AGG 0.552944 1_1:-79860628 Msa0047160:CDS
AAGTAGAATTTGTTGATGAG+AGG 0.558430 1_1:-79861273 Msa0047160:CDS
ATAATTAAACTTAACTGAGT+GGG 0.560601 1_1:+79860638 None:intergenic
GATTTGCAGGCATACGAAAA+GGG 0.561553 1_1:+79866154 None:intergenic
AGATAAGTCAATTAGTGAAG+GGG 0.564373 1_1:-79863193 Msa0047160:CDS
AAGAAACGTGGGACCTATAG+GGG 0.566821 1_1:-79860681 Msa0047160:CDS
TGATAACACCGGCTTTAGCA+TGG 0.570584 1_1:+79860539 None:intergenic
CTTGAGCACCATGCTAAAGC+CGG 0.571283 1_1:-79860547 Msa0047160:three_prime_UTR
TCTCTCTGAAGCTAAAATTG+AGG 0.572494 1_1:-79865953 Msa0047160:intron
TGAATCTGTTGTTGATAATG+TGG 0.576162 1_1:-79863484 Msa0047160:CDS
GAAAATATGAGTGAATCTAA+GGG 0.576840 1_1:-79863012 Msa0047160:CDS
GTTTCTTCTTGGTCTTCTCG+TGG 0.577810 1_1:+79860697 None:intergenic
GACGAGGAGTGAAAGTGAAG+AGG 0.595704 1_1:+79866106 None:intergenic
ACGAGGAGTGAAAGTGAAGA+GGG 0.599283 1_1:+79866107 None:intergenic
CTTCTTCATTTGTTGCATCG+GGG 0.605174 1_1:+79863148 None:intergenic
GGATAACTCATATTGGGCAA+AGG 0.615077 1_1:-79861245 Msa0047160:intron
AATATGAGTGAATCTAAGGG+AGG 0.616915 1_1:-79863009 Msa0047160:CDS
TTCTTGGTCAAGTCAGAGGA+AGG 0.619626 1_1:-79861097 Msa0047160:intron
CAATAAGTCAAATATTGAAG+GGG 0.625288 1_1:-79863334 Msa0047160:CDS
AGCAATCGAACCATGAAGAA+CGG 0.631910 1_1:-79866072 Msa0047160:CDS
CAGATGAAGAAACCAAACGC+AGG 0.637321 1_1:-79863041 Msa0047160:CDS
AAACGGGCTTTCTGAGAATG+GGG 0.639535 1_1:-79862968 Msa0047160:CDS
GAGAAGACCAAGAAGAAACG+TGG 0.639718 1_1:-79860693 Msa0047160:CDS
TATTCAGATGAGGAGTGACT+GGG 0.640238 1_1:-79860618 Msa0047160:exon
ATGGTGCTGAGACAGAGAAA+CGG 0.644173 1_1:-79863380 Msa0047160:CDS
ATGCAGAACGATAATACAGA+GGG 0.648262 1_1:-79864499 Msa0047160:intron
CCAATTGGAGTCACCAACTG+TGG 0.648790 1_1:-79863454 Msa0047160:CDS
AATAAGTCAAATATTGAAGG+GGG 0.651885 1_1:-79863333 Msa0047160:CDS
GAACAGAAGATGAATTAGAG+TGG 0.654246 1_1:-79866191 Msa0047160:five_prime_UTR
AGAAGACCAAGAAGAAACGT+GGG 0.657801 1_1:-79860692 Msa0047160:CDS
AAACGTGGGACCTATAGGGG+TGG 0.658830 1_1:-79860678 Msa0047160:CDS
ATGGTGCTGAGACAGAGAAG+AGG 0.660400 1_1:-79863239 Msa0047160:CDS
AAAACATAAAGAATCATCTG+AGG 0.668418 1_1:-79862911 Msa0047160:intron
TTGCTTAACAAAACTTGACG+AGG 0.675556 1_1:+79866090 None:intergenic
TCAGATGAGGAGTGACTGGG+AGG 0.685329 1_1:-79860615 Msa0047160:exon
GATGCAGAACGATAATACAG+AGG 0.716767 1_1:-79864500 Msa0047160:intron
TAATACAGAGGGTTCCACAG+TGG 0.729759 1_1:-79864488 Msa0047160:CDS
CATCTCTTCTAGATCCACTG+TGG 0.742631 1_1:+79864474 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTCTGAATTTTTTT+TGG - chr1_1:79861505-79861524 Msa0047160:intron 10.0%
!!! TATAATATTTTGAATTTTTC+TGG - chr1_1:79861537-79861556 Msa0047160:intron 10.0%
!!! GAATTATTTATTTTTTCTAA+GGG - chr1_1:79862940-79862959 Msa0047160:CDS 10.0%
!! TTTAATTGAAAATAAAAAGA+GGG + chr1_1:79863882-79863901 None:intergenic 10.0%
!!! TTTTAATTGAAAATAAAAAG+AGG + chr1_1:79863883-79863902 None:intergenic 10.0%
!! TTTATTTATTATTTCATTCT+TGG - chr1_1:79865140-79865159 Msa0047160:intron 10.0%
!! TAAAAGTTGACATATTTATA+GGG + chr1_1:79861248-79861267 None:intergenic 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + chr1_1:79861308-79861327 None:intergenic 15.0%
!!! TGAAGATTGAAAATTTTATA+GGG - chr1_1:79861621-79861640 Msa0047160:intron 15.0%
!!! CGAATTATTTATTTTTTCTA+AGG - chr1_1:79862939-79862958 Msa0047160:CDS 15.0%
!!! TTATTGTTCTTTTTCTTTTT+GGG + chr1_1:79863256-79863275 None:intergenic 15.0%
!! TTAATTGAAAATAAAAAGAG+GGG + chr1_1:79863881-79863900 None:intergenic 15.0%
!!! GAAAATTAAATTTTATACGA+GGG + chr1_1:79863972-79863991 None:intergenic 15.0%
!!! TGAAAATTAAATTTTATACG+AGG + chr1_1:79863973-79863992 None:intergenic 15.0%
!! TACTTAAACTTAATTTAAGT+AGG - chr1_1:79864344-79864363 Msa0047160:intron 15.0%
!! AACTTAAATTCAGTTTAAAT+AGG + chr1_1:79864573-79864592 None:intergenic 15.0%
!! TTTAAGAGAATTTATACAAA+AGG - chr1_1:79864816-79864835 Msa0047160:intron 15.0%
!! TTAAGAGAATTTATACAAAA+GGG - chr1_1:79864817-79864836 Msa0047160:intron 15.0%
!!! AGTCAACTATTTAATTTAAA+GGG + chr1_1:79865022-79865041 None:intergenic 15.0%
!!! TAGTCAACTATTTAATTTAA+AGG + chr1_1:79865023-79865042 None:intergenic 15.0%
!! AGATAAACATATAAAGAAAT+TGG + chr1_1:79865049-79865068 None:intergenic 15.0%
!!! ATTTTTAGTCATATGTATTT+AGG - chr1_1:79865196-79865215 Msa0047160:intron 15.0%
!! ATAAAACAAAAATGAATGAA+AGG + chr1_1:79865798-79865817 None:intergenic 15.0%
!!! ATCAAAATTTTGTTACATTA+TGG - chr1_1:79866084-79866103 Msa0047160:CDS 15.0%
!!! TATAATTGTAATGTTGCTTT+TGG - chr1_1:79860750-79860769 Msa0047160:intron 20.0%
!! AGAGTTTCTTAAAAATTCAT+GGG - chr1_1:79861205-79861224 Msa0047160:intron 20.0%
!! CTAAAAGTTGACATATTTAT+AGG + chr1_1:79861249-79861268 None:intergenic 20.0%
!!! AATATGTCAACTTTTAGTTT+TGG - chr1_1:79861252-79861271 Msa0047160:CDS 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + chr1_1:79861309-79861328 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - chr1_1:79861312-79861331 Msa0047160:CDS 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG - chr1_1:79861589-79861608 Msa0047160:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG - chr1_1:79861590-79861609 Msa0047160:intron 20.0%
!!! AAATTTTCAATCTTCACTTT+TGG + chr1_1:79861617-79861636 None:intergenic 20.0%
!!! GTGAAGATTGAAAATTTTAT+AGG - chr1_1:79861620-79861639 Msa0047160:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr1_1:79861681-79861700 Msa0047160:intron 20.0%
!!! TTTTGGGTTAAATATGTTTT+TGG + chr1_1:79861708-79861727 None:intergenic 20.0%
!! TTTCTATCTAGTAATTGATA+TGG + chr1_1:79862389-79862408 None:intergenic 20.0%
!!! ACAGTATGAAAATTTTATAG+CGG + chr1_1:79862469-79862488 None:intergenic 20.0%
!!! TTGCTTAAAACAATTTTCTA+TGG - chr1_1:79862518-79862537 Msa0047160:intron 20.0%
!!! TTTTACAGCATTTTATAGTA+TGG - chr1_1:79862584-79862603 Msa0047160:intron 20.0%
!!! CTTATTGTTCTTTTTCTTTT+TGG + chr1_1:79863257-79863276 None:intergenic 20.0%
!! AACAATAAGTCAAATATTGA+AGG - chr1_1:79863268-79863287 Msa0047160:CDS 20.0%
!! ACAATAAGTCAAATATTGAA+GGG - chr1_1:79863269-79863288 Msa0047160:CDS 20.0%
!! AGTTACAGAAAATAAAGTTA+AGG - chr1_1:79863312-79863331 Msa0047160:CDS 20.0%
!!! TTTCTTTTTCATTTTACGTT+TGG + chr1_1:79863392-79863411 None:intergenic 20.0%
!! AAAGAATACGTATAAAAAGA+GGG + chr1_1:79863854-79863873 None:intergenic 20.0%
!! TAAAGAATACGTATAAAAAG+AGG + chr1_1:79863855-79863874 None:intergenic 20.0%
!!! ATTTGTGTTTTTCTTGTTTA+TGG - chr1_1:79864182-79864201 Msa0047160:intron 20.0%
!! TGAAACTATCATTATTGAAA+AGG - chr1_1:79864650-79864669 Msa0047160:intron 20.0%
!!! TTTATACAAAAGGGTAATTT+TGG - chr1_1:79864826-79864845 Msa0047160:intron 20.0%
!!! TTGTATTTCTTATACAGTTT+TGG - chr1_1:79865173-79865192 Msa0047160:intron 20.0%
!! ATTATCTAAGAAATGTGTAT+GGG - chr1_1:79865429-79865448 Msa0047160:intron 20.0%
!! GAAATAAAATTGTTTCACTA+CGG + chr1_1:79865548-79865567 None:intergenic 20.0%
!! TTTAATACAAGTGCAAATAT+TGG + chr1_1:79865570-79865589 None:intergenic 20.0%
!!! ACCATCTTATTTTACTTTTT+TGG - chr1_1:79865851-79865870 Msa0047160:intron 20.0%
!! ACCAAAAAAGTAAAATAAGA+TGG + chr1_1:79865855-79865874 None:intergenic 20.0%
!! ATAATTAAACTTAACTGAGT+GGG + chr1_1:79865969-79865988 None:intergenic 20.0%
!! AATAATTAAACTTAACTGAG+TGG + chr1_1:79865970-79865989 None:intergenic 20.0%
!! TAAGTTTAATTATTCAGATG+AGG - chr1_1:79865976-79865995 Msa0047160:CDS 20.0%
!!! TAACAAAATTTTGATAACAC+CGG + chr1_1:79866079-79866098 None:intergenic 20.0%
!! TTGAAACAATATTGTTCATT+TGG - chr1_1:79866111-79866130 Msa0047160:CDS 20.0%
!!! TTTTTCATTGTTTTTCTGCT+AGG - chr1_1:79860779-79860798 Msa0047160:intron 25.0%
! ACTTTAGTATATTAAGAGGA+TGG - chr1_1:79861032-79861051 Msa0047160:intron 25.0%
! CTTCATTCATGAAAAAAGTT+CGG - chr1_1:79861134-79861153 Msa0047160:CDS 25.0%
! CAGAGTTTCTTAAAAATTCA+TGG - chr1_1:79861204-79861223 Msa0047160:intron 25.0%
!!! TCATGGGTTAAATATGTTTT+TGG - chr1_1:79861221-79861240 Msa0047160:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr1_1:79861650-79861669 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr1_1:79861649-79861668 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr1_1:79861649-79861668 Msa0047160:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr1_1:79861650-79861669 Msa0047160:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr1_1:79861680-79861699 Msa0047160:intron 25.0%
! ATTTAACCCAAAATTCATTG+CGG - chr1_1:79861715-79861734 Msa0047160:intron 25.0%
! TAAGTAATTATGTGCATACA+TGG - chr1_1:79861943-79861962 Msa0047160:intron 25.0%
! TGTACTGTGTAGTTTATAAT+CGG + chr1_1:79862232-79862251 None:intergenic 25.0%
!! TAATTGATATGGTTGATACA+TGG + chr1_1:79862378-79862397 None:intergenic 25.0%
!! GCTATAAAATTTTCATACTG+TGG - chr1_1:79862468-79862487 Msa0047160:intron 25.0%
!! ATATTGGCAATTTTATGTAG+CGG - chr1_1:79862492-79862511 Msa0047160:intron 25.0%
!! CTTAAAACAATTTTCTATGG+CGG - chr1_1:79862521-79862540 Msa0047160:intron 25.0%
! AATCTGATATTGAGAACTAT+GGG - chr1_1:79862702-79862721 Msa0047160:intron 25.0%
! ACAGAAATGACAATACTAAT+TGG + chr1_1:79862777-79862796 None:intergenic 25.0%
! ATGTTATAAACAAGAGAGAT+AGG + chr1_1:79862919-79862938 None:intergenic 25.0%
!! TTTCTTTTTCTTTTTTCCCT+TGG + chr1_1:79863086-79863105 None:intergenic 25.0%
! CAATAAGTCAAATATTGAAG+GGG - chr1_1:79863270-79863289 Msa0047160:CDS 25.0%
! AATAAGTCAAATATTGAAGG+GGG - chr1_1:79863271-79863290 Msa0047160:CDS 25.0%
! AAAGATAAGTCAATTAGTGA+AGG - chr1_1:79863409-79863428 Msa0047160:CDS 25.0%
! AAGATAAGTCAATTAGTGAA+GGG - chr1_1:79863410-79863429 Msa0047160:CDS 25.0%
!! TTTAGAATCTTTCTTCTCTT+CGG + chr1_1:79863488-79863507 None:intergenic 25.0%
!!! TCACCATTTTCTTTAGAAAT+TGG + chr1_1:79863523-79863542 None:intergenic 25.0%
! AGAAAATATGAGTGAATCTA+AGG - chr1_1:79863591-79863610 Msa0047160:intron 25.0%
! GAAAATATGAGTGAATCTAA+GGG - chr1_1:79863592-79863611 Msa0047160:intron 25.0%
! AAAACATAAAGAATCATCTG+AGG - chr1_1:79863693-79863712 Msa0047160:intron 25.0%
! AAGAATACGTATAAAAAGAG+GGG + chr1_1:79863853-79863872 None:intergenic 25.0%
! AAGAAATTTCGAAGCAAAAA+AGG - chr1_1:79864086-79864105 Msa0047160:intron 25.0%
! CATGTAAACTTAGTTTAAGT+AGG - chr1_1:79864295-79864314 Msa0047160:intron 25.0%
! CATGTAAACTTAGTTTAAGT+AGG - chr1_1:79864295-79864314 Msa0047160:intron 25.0%
! TTACATAGAATCATTGAACA+AGG + chr1_1:79864433-79864452 None:intergenic 25.0%
! ATTCTATGTAATCTCAGTTT+AGG - chr1_1:79864442-79864461 Msa0047160:intron 25.0%
! CATGTAAACTTAGTTTAAGT+AGG - chr1_1:79864295-79864314 Msa0047160:intron 25.0%
! TATTCAAGAATTTATAGCAC+AGG + chr1_1:79864952-79864971 None:intergenic 25.0%
! TAAAACTTACCTAACATTTC+AGG - chr1_1:79864977-79864996 Msa0047160:intron 25.0%
! AACATAAATCTTAGTTTCAG+TGG + chr1_1:79865234-79865253 None:intergenic 25.0%
! ACTGAAACTAAGATTTATGT+TGG - chr1_1:79865233-79865252 Msa0047160:intron 25.0%
! ATTTCTTAGATAATGCAACT+GGG + chr1_1:79865423-79865442 None:intergenic 25.0%
! CATTATCTAAGAAATGTGTA+TGG - chr1_1:79865428-79865447 Msa0047160:intron 25.0%
! TTCATAGACAAGCTATAAAT+AGG - chr1_1:79865652-79865671 Msa0047160:intron 25.0%
!! TCTATGGAAAATTTGTTTGA+TGG - chr1_1:79865719-79865738 Msa0047160:intron 25.0%
!! CTATGGAAAATTTGTTTGAT+GGG - chr1_1:79865720-79865739 Msa0047160:intron 25.0%
! GATATATGTGTGAAAAATCT+GGG + chr1_1:79865771-79865790 None:intergenic 25.0%
!! CAGATTTTTCACACATATAT+CGG - chr1_1:79865770-79865789 Msa0047160:intron 25.0%
!!! TGTTTTGATTGCATATCAAA+TGG - chr1_1:79866217-79866236 Msa0047160:five_prime_UTR 25.0%
!!! ACTGGTTAGGGTTTATTTTA+GGG + chr1_1:79860393-79860412 None:intergenic 30.0%
! TTCAGAGAGAAACTTTTTGA+GGG + chr1_1:79860641-79860660 None:intergenic 30.0%
!! AGAAGCATCTTGATTGAATT+TGG - chr1_1:79860823-79860842 Msa0047160:intron 30.0%
! GAAGCATCTTGATTGAATTT+GGG - chr1_1:79860824-79860843 Msa0047160:intron 30.0%
GCTTATAGCTAATGTGAAAA+AGG - chr1_1:79860995-79861014 Msa0047160:intron 30.0%
TGTGAAAAAGGATATCACTT+TGG - chr1_1:79861007-79861026 Msa0047160:intron 30.0%
GGTGACTTTAGTATATTAAG+AGG - chr1_1:79861028-79861047 Msa0047160:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr1_1:79861636-79861655 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr1_1:79861636-79861655 Msa0047160:intron 30.0%
ACATTCGCAATGCAAATATA+TGG + chr1_1:79861846-79861865 None:intergenic 30.0%
! AGAATCTGTTTTACTCAGTT+TGG + chr1_1:79861909-79861928 None:intergenic 30.0%
TCACCGTTCAATAACAAATT+TGG - chr1_1:79862041-79862060 Msa0047160:intron 30.0%
!! CAGCCAAATTTGTTATTGAA+CGG + chr1_1:79862047-79862066 None:intergenic 30.0%
ACCATGTTTCCAAATATTTG+CGG + chr1_1:79862158-79862177 None:intergenic 30.0%
! AATCTTGAAAGTGTAGAACA+AGG + chr1_1:79862196-79862215 None:intergenic 30.0%
! GTTCTACACTTTCAAGATTT+TGG - chr1_1:79862197-79862216 Msa0047160:intron 30.0%
CAATTACTAGATAGAAAGCT+TGG - chr1_1:79862392-79862411 Msa0047160:intron 30.0%
! ATTTTCATACTGTGGCATAT+TGG - chr1_1:79862476-79862495 Msa0047160:intron 30.0%
AAATGCTATAGCAAGATCAT+AGG + chr1_1:79862658-79862677 None:intergenic 30.0%
CAATCTGATATTGAGAACTA+TGG - chr1_1:79862701-79862720 Msa0047160:intron 30.0%
AATGACAATACTAATTGGTG+TGG + chr1_1:79862772-79862791 None:intergenic 30.0%
TTTCAATTACTGCTAATTGC+AGG - chr1_1:79863031-79863050 Msa0047160:CDS 30.0%
! GGATTTTTCCTCATCATTTT+TGG + chr1_1:79863065-79863084 None:intergenic 30.0%
AAATGATGAGGAAAAATCCA+AGG - chr1_1:79863066-79863085 Msa0047160:CDS 30.0%
AATGATGAGGAAAAATCCAA+GGG - chr1_1:79863067-79863086 Msa0047160:CDS 30.0%
!! TGAATCTGTTGTTGATAATG+TGG - chr1_1:79863120-79863139 Msa0047160:CDS 30.0%
GGTTACAGAAAACAAAGTTA+AGG - chr1_1:79863171-79863190 Msa0047160:CDS 30.0%
!!! GTTCTTTTTCTTTTTGGGTT+TGG + chr1_1:79863251-79863270 None:intergenic 30.0%
! ATTTTCAACTTTGGCATCTA+TGG + chr1_1:79863347-79863366 None:intergenic 30.0%
ATAGATGCCAAAGTTGAAAA+TGG - chr1_1:79863346-79863365 Msa0047160:CDS 30.0%
AGATAAGTCAATTAGTGAAG+GGG - chr1_1:79863411-79863430 Msa0047160:CDS 30.0%
TTAGAATCTTTCTTCTCTTC+GGG + chr1_1:79863487-79863506 None:intergenic 30.0%
! CGACCAATTTCTAAAGAAAA+TGG - chr1_1:79863517-79863536 Msa0047160:CDS 30.0%
TGAACAAGATACCGAAATAA+AGG - chr1_1:79863540-79863559 Msa0047160:CDS 30.0%
! TTCTTCATCTGCCTTTATTT+CGG + chr1_1:79863554-79863573 None:intergenic 30.0%
! ATTTTCTATTTTCCTGCGTT+TGG + chr1_1:79863578-79863597 None:intergenic 30.0%
AATTACACCCTTTATAATCC+TGG - chr1_1:79863922-79863941 Msa0047160:intron 30.0%
! AAGACGGAAGATAGATTTTT+GGG + chr1_1:79864025-79864044 None:intergenic 30.0%
! AAAGACGGAAGATAGATTTT+TGG + chr1_1:79864026-79864045 None:intergenic 30.0%
!! CTTTGAAATCTTGCATAGAA+GGG + chr1_1:79864069-79864088 None:intergenic 30.0%
!! TCTTTGAAATCTTGCATAGA+AGG + chr1_1:79864070-79864089 None:intergenic 30.0%
AATTTCGAAGCAAAAAAGGT+TGG - chr1_1:79864090-79864109 Msa0047160:intron 30.0%
ATCGATTATGTTCTTGTCAT+GGG - chr1_1:79864129-79864148 Msa0047160:intron 30.0%
!! TCCTAATTCTAAGCTTTTTC+TGG - chr1_1:79864154-79864173 Msa0047160:intron 30.0%
!! CCTAATTCTAAGCTTTTTCT+GGG - chr1_1:79864155-79864174 Msa0047160:intron 30.0%
AGGTATGTACATGTAAACTT+AGG - chr1_1:79864462-79864481 Msa0047160:CDS 30.0%
TGATGTTCAATCAATCTATG+TGG + chr1_1:79864742-79864761 None:intergenic 30.0%
ACATAGATTGATTGAACATC+AGG - chr1_1:79864741-79864760 Msa0047160:intron 30.0%
AGTGACTATGAATGAAATCA+AGG - chr1_1:79864792-79864811 Msa0047160:intron 30.0%
ACACAATAACCTGAAATGTT+AGG + chr1_1:79864989-79865008 None:intergenic 30.0%
!! AAGTAGAATTTGTTGATGAG+AGG - chr1_1:79865331-79865350 Msa0047160:intron 30.0%
! TGATATGTTTTCCATGCATT+TGG - chr1_1:79865392-79865411 Msa0047160:intron 30.0%
CATTTCTTAGATAATGCAAC+TGG + chr1_1:79865424-79865443 None:intergenic 30.0%
! TTTGTCTAGTGAGTTTTCTA+TGG - chr1_1:79865703-79865722 Msa0047160:intron 30.0%
CGATATATGTGTGAAAAATC+TGG + chr1_1:79865772-79865791 None:intergenic 30.0%
ACACCAAATATTTCTCTTAC+AGG - chr1_1:79865876-79865895 Msa0047160:intron 30.0%
CACCAAATATTTCTCTTACA+GGG - chr1_1:79865877-79865896 Msa0047160:intron 30.0%
ATCCCTGTAAGAGAAATATT+TGG + chr1_1:79865882-79865901 None:intergenic 30.0%
! CAAAATTTTGCTACATTACG+AGG - chr1_1:79866184-79866203 Msa0047160:five_prime_UTR 30.0%
!! CACTGGTTAGGGTTTATTTT+AGG + chr1_1:79860394-79860413 None:intergenic 35.0%
CTAATTCATCTTCTGTTCAC+TGG + chr1_1:79860411-79860430 None:intergenic 35.0%
GAACAGAAGATGAATTAGAG+TGG - chr1_1:79860413-79860432 Msa0047160:three_prime_UTR 35.0%
AGAAGATGAATTAGAGTGGT+TGG - chr1_1:79860417-79860436 Msa0047160:three_prime_UTR 35.0%
GAAGATGAATTAGAGTGGTT+GGG - chr1_1:79860418-79860437 Msa0047160:three_prime_UTR 35.0%
! GGAATTCTTTTGATACCTGA+TGG + chr1_1:79860475-79860494 None:intergenic 35.0%
TTGCTTAACAAAACTTGACG+AGG + chr1_1:79860517-79860536 None:intergenic 35.0%
CCAAGTAAAGAGCAATTGAT+TGG + chr1_1:79860597-79860616 None:intergenic 35.0%
CCAATCAATTGCTCTTTACT+TGG - chr1_1:79860594-79860613 Msa0047160:three_prime_UTR 35.0%
!! GAGAAACTTTTTGAGGGTTT+TGG + chr1_1:79860635-79860654 None:intergenic 35.0%
! CTTCAGAGAGAAACTTTTTG+AGG + chr1_1:79860642-79860661 None:intergenic 35.0%
!! TCTCTCTGAAGCTAAAATTG+AGG - chr1_1:79860651-79860670 Msa0047160:CDS 35.0%
! TCTGAAGCTAAAATTGAGGT+GGG - chr1_1:79860655-79860674 Msa0047160:CDS 35.0%
TCACTTTCCATTCATTCGTT+TGG - chr1_1:79860678-79860697 Msa0047160:CDS 35.0%
! GATTGAATTTGGGATCTGTT+TGG - chr1_1:79860834-79860853 Msa0047160:intron 35.0%
! AATTTGGGATCTGTTTGGAT+TGG - chr1_1:79860839-79860858 Msa0047160:intron 35.0%
AATAAGCTGAAAGCAGCTTA+TGG + chr1_1:79860942-79860961 None:intergenic 35.0%
GCTGTTTACATGAGCTATTT+CGG + chr1_1:79860977-79860996 None:intergenic 35.0%
TGCGAATGTCATCTAAATTG+AGG - chr1_1:79861857-79861876 Msa0047160:intron 35.0%
TTATGTGCATACATGGCAAA+AGG - chr1_1:79861950-79861969 Msa0047160:intron 35.0%
TATGGAATACAGAGGAATTC+TGG + chr1_1:79862006-79862025 None:intergenic 35.0%
!! TTTGTTATTGAACGGTGAGA+AGG + chr1_1:79862039-79862058 None:intergenic 35.0%
CGTTCAATAACAAATTTGGC+TGG - chr1_1:79862045-79862064 Msa0047160:intron 35.0%
TATCGTTCTGCATCAACAAA+AGG + chr1_1:79862098-79862117 None:intergenic 35.0%
ATGCAGAACGATAATACAGA+GGG - chr1_1:79862105-79862124 Msa0047160:intron 35.0%
AGTGTACAGTTTACAGGATT+AGG + chr1_1:79862260-79862279 None:intergenic 35.0%
! TAAGAACAGTTTTGCACTAG+TGG + chr1_1:79862295-79862314 None:intergenic 35.0%
TGTATAAAGTACAGTGTGAC+TGG - chr1_1:79862328-79862347 Msa0047160:intron 35.0%
! GTGCTACTAACAATTATGAC+TGG + chr1_1:79862419-79862438 None:intergenic 35.0%
GGTCTGAAGAATACAAATGT+AGG + chr1_1:79862619-79862638 None:intergenic 35.0%
ATAGCAAGATCATAGGTAGT+GGG + chr1_1:79862651-79862670 None:intergenic 35.0%
TATAGCAAGATCATAGGTAG+TGG + chr1_1:79862652-79862671 None:intergenic 35.0%
! TGATCTTGCTATAGCATTTG+TGG - chr1_1:79862659-79862678 Msa0047160:intron 35.0%
! GATCTTGCTATAGCATTTGT+GGG - chr1_1:79862660-79862679 Msa0047160:intron 35.0%
! ATCTTGCTATAGCATTTGTG+GGG - chr1_1:79862661-79862680 Msa0047160:intron 35.0%
! ATCAATGATCAAAAAGCGCA+AGG - chr1_1:79862871-79862890 Msa0047160:intron 35.0%
! ACAAGAGAGATAGGTTTTCA+AGG + chr1_1:79862910-79862929 None:intergenic 35.0%
TCGTGGCGATTAAATCTTAA+TGG - chr1_1:79863003-79863022 Msa0047160:CDS 35.0%
TGGCGATTAAATCTTAATGG+TGG - chr1_1:79863006-79863025 Msa0047160:CDS 35.0%
TAATGTGGAAGACAACCAAT+TGG - chr1_1:79863135-79863154 Msa0047160:CDS 35.0%
! TTGTTTTCTGTAACCACAGT+TGG + chr1_1:79863166-79863185 None:intergenic 35.0%
!! ACAGATGCCAAAGTTGATAA+TGG - chr1_1:79863205-79863224 Msa0047160:CDS 35.0%
! TGCTTCTTCATTTGTTGCAT+CGG + chr1_1:79863461-79863480 None:intergenic 35.0%
AATATGAGTGAATCTAAGGG+AGG - chr1_1:79863595-79863614 Msa0047160:intron 35.0%
GACCAATCAGCAAAATCAAA+CGG - chr1_1:79863619-79863638 Msa0047160:intron 35.0%
ACCAATCAGCAAAATCAAAC+GGG - chr1_1:79863620-79863639 Msa0047160:intron 35.0%
ATTCTCTCTGAATCTGTACA+TGG - chr1_1:79863735-79863754 Msa0047160:CDS 35.0%
! ATTTCAAAGTGCCTATCCAT+TGG + chr1_1:79863772-79863791 None:intergenic 35.0%
GGTGTAACCAGGATTATAAA+GGG + chr1_1:79863932-79863951 None:intergenic 35.0%
! AGGGTAATTTTGTCATTCTG+GGG + chr1_1:79863953-79863972 None:intergenic 35.0%
! GAGGGTAATTTTGTCATTCT+GGG + chr1_1:79863954-79863973 None:intergenic 35.0%
AAAGTCTCTTCCTTCTTTCT+TGG - chr1_1:79863994-79864013 Msa0047160:intron 35.0%
GATCGATTATGTTCTTGTCA+TGG - chr1_1:79864128-79864147 Msa0047160:intron 35.0%
CCCAGAAAAAGCTTAGAATT+AGG + chr1_1:79864158-79864177 None:intergenic 35.0%
TTTAGATGCACACTTAAACG+CGG + chr1_1:79864403-79864422 None:intergenic 35.0%
CGGTTTCAATTTACATGTTG+AGG + chr1_1:79864598-79864617 None:intergenic 35.0%
TTGTTCAACAGCATGTACAA+CGG + chr1_1:79864618-79864637 None:intergenic 35.0%
ATTCACACCTCAAATATTGC+TGG + chr1_1:79864887-79864906 None:intergenic 35.0%
!! TTTCAGGTTATTGTGTTTGC+TGG - chr1_1:79864993-79865012 Msa0047160:intron 35.0%
CTTAGTTTCAGTGGTGAAAT+TGG + chr1_1:79865225-79865244 None:intergenic 35.0%
GCTTCAGGATAACTCATATT+GGG - chr1_1:79865353-79865372 Msa0047160:intron 35.0%
GCAAAAGCAGAAGAAATTCT+TGG - chr1_1:79865491-79865510 Msa0047160:intron 35.0%
CTATAAATAGGTCATGCTGT+TGG - chr1_1:79865664-79865683 Msa0047160:intron 35.0%
! CATCTTCTGTTCACTGGTTA+GGG + chr1_1:79860405-79860424 None:intergenic 40.0%
! TCATCTTCTGTTCACTGGTT+AGG + chr1_1:79860406-79860425 None:intergenic 40.0%
GATTTGCAGGCATACGAAAA+GGG + chr1_1:79860453-79860472 None:intergenic 40.0%
!! TTGATACCTGATGGATTTGC+AGG + chr1_1:79860466-79860485 None:intergenic 40.0%
AGCAATCGAACCATGAAGAA+CGG - chr1_1:79860532-79860551 Msa0047160:three_prime_UTR 40.0%
! CTGCTTCTGTTCAGAGTTTT+GGG + chr1_1:79860560-79860579 None:intergenic 40.0%
! TCTGCTTCTGTTCAGAGTTT+TGG + chr1_1:79860561-79860580 None:intergenic 40.0%
!! CTCTGAAGCTAAAATTGAGG+TGG - chr1_1:79860654-79860673 Msa0047160:CDS 40.0%
ACAGTGTCCAAACGAATGAA+TGG + chr1_1:79860688-79860707 None:intergenic 40.0%
TACACATCTGTGAAACTGCT+TGG - chr1_1:79860886-79860905 Msa0047160:intron 40.0%
AAACTGCTTGGAAGAGCTTA+TGG - chr1_1:79860898-79860917 Msa0047160:intron 40.0%
TCCAGACAAGAGAGAATGAT+CGG - chr1_1:79861076-79861095 Msa0047160:intron 40.0%
! TCAGCACCGCAATGAATTTT+GGG + chr1_1:79861724-79861743 None:intergenic 40.0%
GATGCAGAACGATAATACAG+AGG - chr1_1:79862104-79862123 Msa0047160:intron 40.0%
AGAGATGTGCCGCAAATATT+TGG - chr1_1:79862146-79862165 Msa0047160:intron 40.0%
GCCGCAAATATTTGGAAACA+TGG - chr1_1:79862154-79862173 Msa0047160:intron 40.0%
TGTAGAACAAGGCTAAGGTT+GGG + chr1_1:79862185-79862204 None:intergenic 40.0%
! GAAAGTGTAGAACAAGGCTA+AGG + chr1_1:79862190-79862209 None:intergenic 40.0%
CTTGTCAGTGTACAGTTTAC+AGG + chr1_1:79862266-79862285 None:intergenic 40.0%
TAGCAGTGAAAAGTAGCAGT+TGG - chr1_1:79862443-79862462 Msa0047160:intron 40.0%
ATGCTGTAAAATAGCAGCCA+TGG + chr1_1:79862575-79862594 None:intergenic 40.0%
CTGATATTGAGAACTATGGG+AGG - chr1_1:79862705-79862724 Msa0047160:intron 40.0%
TTCATCTCTCTTCAGTAGCA+AGG - chr1_1:79862834-79862853 Msa0047160:intron 40.0%
TTCTCTTGCTTCTTGAATCG+TGG - chr1_1:79862986-79863005 Msa0047160:CDS 40.0%
ATTACTGCTAATTGCAGGTG+TGG - chr1_1:79863036-79863055 Msa0047160:CDS 40.0%
TGTGGACTCCAAAAATGATG+AGG - chr1_1:79863054-79863073 Msa0047160:CDS 40.0%
CTCAGCACCATTATCAACTT+TGG + chr1_1:79863215-79863234 None:intergenic 40.0%
! CTCAGCACCATTTTCAACTT+TGG + chr1_1:79863356-79863375 None:intergenic 40.0%
! CTTCTTCATTTGTTGCATCG+GGG + chr1_1:79863459-79863478 None:intergenic 40.0%
! GCTTCTTCATTTGTTGCATC+GGG + chr1_1:79863460-79863479 None:intergenic 40.0%
GGGTGTAACCAGGATTATAA+AGG + chr1_1:79863933-79863952 None:intergenic 40.0%
! CGAGGGTAATTTTGTCATTC+TGG + chr1_1:79863955-79863974 None:intergenic 40.0%
TTGGGTGTAACCAAGAAAGA+AGG + chr1_1:79864007-79864026 None:intergenic 40.0%
TCTGCTTGAAGAAGGAAAGA+CGG + chr1_1:79864041-79864060 None:intergenic 40.0%
GGGATAAATCTGCTTGAAGA+AGG + chr1_1:79864049-79864068 None:intergenic 40.0%
AGGATCGTTTGATCGTTTGT+GGG - chr1_1:79864761-79864780 Msa0047160:intron 40.0%
GGTGTAACCAGCAATATTTG+AGG - chr1_1:79864877-79864896 Msa0047160:intron 40.0%
AGAATTTATAGCACAGGCTG+AGG + chr1_1:79864946-79864965 None:intergenic 40.0%
ATTGCAGCAAAAACCAGTGA+AGG - chr1_1:79865281-79865300 Msa0047160:intron 40.0%
! ATTTGTTGATGAGAGGCTTC+AGG - chr1_1:79865338-79865357 Msa0047160:intron 40.0%
GGCTTCAGGATAACTCATAT+TGG - chr1_1:79865352-79865371 Msa0047160:intron 40.0%
GGATAACTCATATTGGGCAA+AGG - chr1_1:79865359-79865378 Msa0047160:intron 40.0%
! TTTTGCACCATAACCACTCT+CGG + chr1_1:79865477-79865496 None:intergenic 40.0%
GAAATTCTTGGTCAAGTCAG+AGG - chr1_1:79865503-79865522 Msa0047160:intron 40.0%
AGAAGACCAAGAAGAAACGT+GGG - chr1_1:79865912-79865931 Msa0047160:intron 40.0%
ATCAATAAGTCCACCCCTAT+AGG + chr1_1:79865939-79865958 None:intergenic 40.0%
TTATTCAGATGAGGAGTGAC+TGG - chr1_1:79865985-79866004 Msa0047160:CDS 40.0%
TATTCAGATGAGGAGTGACT+GGG - chr1_1:79865986-79866005 Msa0047160:CDS 40.0%
GATGAATTAGAGTGGTTGGG+TGG - chr1_1:79860421-79860440 Msa0047160:three_prime_UTR 45.0%
GGATTTGCAGGCATACGAAA+AGG + chr1_1:79860454-79860473 None:intergenic 45.0%
ACGAGGAGTGAAAGTGAAGA+GGG + chr1_1:79860500-79860519 None:intergenic 45.0%
!!! GTTTTGGGTTCCGTTCTTCA+TGG + chr1_1:79860545-79860564 None:intergenic 45.0%
TGCTCTTTACTTGGAACGCT+CGG - chr1_1:79860603-79860622 Msa0047160:three_prime_UTR 45.0%
ACCGATCATTCTCTCTTGTC+TGG + chr1_1:79861080-79861099 None:intergenic 45.0%
! CTCAGCACCGCAATGAATTT+TGG + chr1_1:79861725-79861744 None:intergenic 45.0%
! CAAAATTCATTGCGGTGCTG+AGG - chr1_1:79861723-79861742 Msa0047160:intron 45.0%
GACACGGATATGGAATACAG+AGG + chr1_1:79862014-79862033 None:intergenic 45.0%
TGAGAAGGAAGACACGGATA+TGG + chr1_1:79862024-79862043 None:intergenic 45.0%
TAATACAGAGGGTTCCACAG+TGG - chr1_1:79862116-79862135 Msa0047160:intron 45.0%
CATCTCTTCTAGATCCACTG+TGG + chr1_1:79862133-79862152 None:intergenic 45.0%
GTGTAGAACAAGGCTAAGGT+TGG + chr1_1:79862186-79862205 None:intergenic 45.0%
TGGCCATTGTCTCATGTTGT+TGG - chr1_1:79862348-79862367 Msa0047160:intron 45.0%
GGCCATTGTCTCATGTTGTT+GGG - chr1_1:79862349-79862368 Msa0047160:intron 45.0%
GCCATTGTCTCATGTTGTTG+GGG - chr1_1:79862350-79862369 Msa0047160:intron 45.0%
TCCCCAACAACATGAGACAA+TGG + chr1_1:79862354-79862373 None:intergenic 45.0%
CTGTAAAATAGCAGCCATGG+CGG + chr1_1:79862572-79862591 None:intergenic 45.0%
!! ATAGGTAGTGGGATAACTGC+TGG + chr1_1:79862640-79862659 None:intergenic 45.0%
TGCTATAGCATTTGTGGGGT+TGG - chr1_1:79862665-79862684 Msa0047160:intron 45.0%
! ATGGTGCTGAGACAGAGAAA+CGG - chr1_1:79863224-79863243 Msa0047160:CDS 45.0%
CAGATGAAGAAACCAAACGC+AGG - chr1_1:79863563-79863582 Msa0047160:intron 45.0%
!! GCCCGTTTGATTTTGCTGAT+TGG + chr1_1:79863624-79863643 None:intergenic 45.0%
! TCAAACGGGCTTTCTGAGAA+TGG - chr1_1:79863634-79863653 Msa0047160:intron 45.0%
! CAAACGGGCTTTCTGAGAAT+GGG - chr1_1:79863635-79863654 Msa0047160:intron 45.0%
! AAACGGGCTTTCTGAGAATG+GGG - chr1_1:79863636-79863655 Msa0047160:intron 45.0%
CAGGATCGTTTGATCGTTTG+TGG - chr1_1:79864760-79864779 Msa0047160:intron 45.0%
TAGAAAGCAGCAAGAAGAGC+AGG + chr1_1:79865109-79865128 None:intergenic 45.0%
TTCTTGGTCAAGTCAGAGGA+AGG - chr1_1:79865507-79865526 Msa0047160:intron 45.0%
! GTTTCTTCTTGGTCTTCTCG+TGG + chr1_1:79865910-79865929 None:intergenic 45.0%
GAGAAGACCAAGAAGAAACG+TGG - chr1_1:79865911-79865930 Msa0047160:intron 45.0%
ATAGGTCCCACGTTTCTTCT+TGG + chr1_1:79865921-79865940 None:intergenic 45.0%
AGAAGAAACGTGGGACCTAT+AGG - chr1_1:79865921-79865940 Msa0047160:intron 45.0%
GAAGAAACGTGGGACCTATA+GGG - chr1_1:79865922-79865941 Msa0047160:intron 45.0%
AAGAAACGTGGGACCTATAG+GGG - chr1_1:79865923-79865942 Msa0047160:intron 45.0%
!! TGATAACACCGGCTTTAGCA+TGG + chr1_1:79866068-79866087 None:intergenic 45.0%
!! ACAAATTTAAATTAAAAATA+GGG + chr1_1:79861339-79861358 None:intergenic 5.0%
!! TACAAATTTAAATTAAAAAT+AGG + chr1_1:79861340-79861359 None:intergenic 5.0%
!!! AAAAAATTCTAATTTTTTTT+AGG + chr1_1:79861412-79861431 None:intergenic 5.0%
!!! TAAAAATTTTTAAGAAAATT+TGG - chr1_1:79864855-79864874 Msa0047160:intron 5.0%
!!! AAAAATTTTTAAGAAAATTT+GGG - chr1_1:79864856-79864875 Msa0047160:intron 5.0%
CGTATGCCTGCAAATCCATC+AGG - chr1_1:79860457-79860476 Msa0047160:three_prime_UTR 50.0%
GGAGTGAAAGTGAAGAGGGT+TGG + chr1_1:79860496-79860515 None:intergenic 50.0%
GACGAGGAGTGAAAGTGAAG+AGG + chr1_1:79860501-79860520 None:intergenic 50.0%
GCTCTTTACTTGGAACGCTC+GGG - chr1_1:79860604-79860623 Msa0047160:exon 50.0%
GAACGGTGAGAAGGAAGACA+CGG + chr1_1:79862030-79862049 None:intergenic 50.0%
TTCACTACGTCATTCCGCCA+TGG - chr1_1:79862555-79862574 Msa0047160:intron 50.0%
!! CCACAGTTGGTGACTCCAAT+TGG + chr1_1:79863153-79863172 None:intergenic 50.0%
CCAATTGGAGTCACCAACTG+TGG - chr1_1:79863150-79863169 Msa0047160:CDS 50.0%
! ATGGTGCTGAGACAGAGAAG+AGG - chr1_1:79863365-79863384 Msa0047160:CDS 50.0%
GGGGATGCAAAAGAGCAGAT+TGG - chr1_1:79863430-79863449 Msa0047160:CDS 50.0%
ATCTGTACATGGCATCCTCC+TGG - chr1_1:79863746-79863765 Msa0047160:CDS 50.0%
! AAAGTGCCTATCCATTGGCC+AGG + chr1_1:79863767-79863786 None:intergenic 50.0%
!! TGTCATTCTGGGGTGTAACC+AGG + chr1_1:79863943-79863962 None:intergenic 50.0%
CGTTGAAATGCTGCCTTCAC+TGG + chr1_1:79865297-79865316 None:intergenic 50.0%
ACTGGGACACACCAAATGCA+TGG + chr1_1:79865406-79865425 None:intergenic 50.0%
GTATGGGTCTATCTCTCTGC+AGG - chr1_1:79865445-79865464 Msa0047160:intron 50.0%
CTTGAGCACCATGCTAAAGC+CGG - chr1_1:79866057-79866076 Msa0047160:CDS 50.0%
CATCCTCCTGGCCAATGGAT+AGG - chr1_1:79863758-79863777 Msa0047160:CDS 55.0%
GGGTCTATCTCTCTGCAGGA+TGG - chr1_1:79865449-79865468 Msa0047160:intron 55.0%
AAACGTGGGACCTATAGGGG+TGG - chr1_1:79865926-79865945 Msa0047160:intron 55.0%
TCAGATGAGGAGTGACTGGG+AGG - chr1_1:79865989-79866008 Msa0047160:CDS 55.0%
CATGGCATCCTCCTGGCCAA+TGG - chr1_1:79863753-79863772 Msa0047160:CDS 60.0%
GTGCCTATCCATTGGCCAGG+AGG + chr1_1:79863764-79863783 None:intergenic 60.0%
! GATGGCGCCGAGAGTGGTTA+TGG - chr1_1:79865467-79865486 Msa0047160:intron 60.0%
! CTGCAGGATGGCGCCGAGAG+TGG - chr1_1:79865461-79865480 Msa0047160:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 79860384 79866242 79860384 ID=Msa0047160;Name=Msa0047160
chr1_1 mRNA 79860384 79866242 79860384 ID=Msa0047160-mRNA-1;Parent=Msa0047160;Name=Msa0047160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=76|1|1|1|1|1|7|239|414
chr1_1 exon 79860384 79860728 79860384 ID=Msa0047160-mRNA-1:exon:27565;Parent=Msa0047160-mRNA-1
chr1_1 exon 79861098 79861159 79861098 ID=Msa0047160-mRNA-1:exon:27564;Parent=Msa0047160-mRNA-1
chr1_1 exon 79861246 79861338 79861246 ID=Msa0047160-mRNA-1:exon:27563;Parent=Msa0047160-mRNA-1
chr1_1 exon 79862912 79863573 79862912 ID=Msa0047160-mRNA-1:exon:27562;Parent=Msa0047160-mRNA-1
chr1_1 exon 79863734 79863777 79863734 ID=Msa0047160-mRNA-1:exon:27561;Parent=Msa0047160-mRNA-1
chr1_1 exon 79864451 79864515 79864451 ID=Msa0047160-mRNA-1:exon:27560;Parent=Msa0047160-mRNA-1
chr1_1 exon 79865954 79866242 79865954 ID=Msa0047160-mRNA-1:exon:27559;Parent=Msa0047160-mRNA-1
chr1_1 five_prime_UTR 79866167 79866242 79866167 ID=Msa0047160-mRNA-1:five_prime_utr;Parent=Msa0047160-mRNA-1
chr1_1 CDS 79865954 79866166 79865954 ID=Msa0047160-mRNA-1:cds;Parent=Msa0047160-mRNA-1
chr1_1 CDS 79864451 79864515 79864451 ID=Msa0047160-mRNA-1:cds;Parent=Msa0047160-mRNA-1
chr1_1 CDS 79863734 79863777 79863734 ID=Msa0047160-mRNA-1:cds;Parent=Msa0047160-mRNA-1
chr1_1 CDS 79862912 79863573 79862912 ID=Msa0047160-mRNA-1:cds;Parent=Msa0047160-mRNA-1
chr1_1 CDS 79861246 79861338 79861246 ID=Msa0047160-mRNA-1:cds;Parent=Msa0047160-mRNA-1
chr1_1 CDS 79861098 79861159 79861098 ID=Msa0047160-mRNA-1:cds;Parent=Msa0047160-mRNA-1
chr1_1 CDS 79860623 79860728 79860623 ID=Msa0047160-mRNA-1:cds;Parent=Msa0047160-mRNA-1
chr1_1 three_prime_UTR 79860384 79860622 79860384 ID=Msa0047160-mRNA-1:three_prime_utr;Parent=Msa0047160-mRNA-1
Gene Sequence

>Msa0047160

ATGCCTGCAAATCCATCAGGTATCAAAAGAATTCCAACCCTCTTCACTTTCACTCCTCGTCAAGTTTTGTTAAGCAATCGAACCATGAAGAACGGAACCCAAAACTCTGAACAGAAGCAGAAGCTTCTTCTGAACCAATCAATTGCTCTTTACTTGGAACGCTCGGGATTCTCCAAAACCCTCAAAAAGTTTCTCTCTGAAGCTAAAATTGAGAACGATAATACAGAGGGTTCCACAGTGGATCTAGAAGAGATGTGCCGCAAATATTTGGAAACATGTAGCAAGGATGCTAAGTCAACTATCAATGATCAAAAAGCGCAAGGTGTGGACTCCAAAAATGATGAGGAAAAATCCAAGGGAAAAAAGAAAAAGAAAAGCAACGTAGTTTCTGAATCTGTTGTTGATAATGTGGAAGACAACCAATTGGAGTCACCAACTGTGGTTACAGAAAACAAAGTTAAGGATGATTTATCTACAGATGCCAAAGTTGATAATGGTGCTGAGACAGAGAAACGGTCCAAACCCAAAAAGAAAAAGAACAATAAGTCAAATATTGAAGGGGGTGCAATAGAGCAGAATGCAGTTACAGAAAATAAAGTTAAGGATGATTTATCCATAGATGCCAAAGTTGAAAATGGTGCTGAGACAGAGAAGAGGTCCAAACGTAAAATGAAAAAGAAAGATAAGTCAATTAGTGAAGGGGATGCAAAAGAGCAGATTGGAGACCCCGATGCAACAAATGAAGAAGCAACGCCCGAAGAGAAGAAAGATTCTAAAAAAAGAAAGCGACCAATTTCTAAAGAAAATGGTGAACAAGATACCGAAATAAAGGCAGATGAAGAAACCAAACGCAGGAAAATAGAAAATATGAGTGAATCTAAGGGAGGAGACCAATCAGCAAAATCAAACGGGCTTTCTGAGAATGGGGAAGAAAATTCTTCTGTGCAAAAGTCTCAGAAGAAAAAACATAAAGAATCATCTGAGCAAAAACCAGTGAAGGCAGCATTTCAACGCGTACAAGTTGACAAAGTAGAATTTGTTGATGAGAGGCTTCAGGATAACTCATATTGGGCAAAGGATGGCGCCGAGAGTGGTTATGGTGCAAAAGCAGAAGAAATTCTTGGTCAAGTCAGAGGAAGGGATTTTCGCCACGAGAAGACCAAGAAGAAACGTGGGACCTATAGGGGTGGACTTATTGATTTACATTCCCACTCAGTTAAGTTTAATTATTCAGATGAGGAGTGA

Protein sequence

>Msa0047160

MPANPSGIKRIPTLFTFTPRQVLLSNRTMKNGTQNSEQKQKLLLNQSIALYLERSGFSKTLKKFLSEAKIENDNTEGSTVDLEEMCRKYLETCSKDAKSTINDQKAQGVDSKNDEEKSKGKKKKKSNVVSESVVDNVEDNQLESPTVVTENKVKDDLSTDAKVDNGAETEKRSKPKKKKNNKSNIEGGAIEQNAVTENKVKDDLSIDAKVENGAETEKRSKRKMKKKDKSISEGDAKEQIGDPDATNEEATPEEKKDSKKRKRPISKENGEQDTEIKADEETKRRKIENMSESKGGDQSAKSNGLSENGEENSSVQKSQKKKHKESSEQKPVKAAFQRVQVDKVEFVDERLQDNSYWAKDGAESGYGAKAEEILGQVRGRDFRHEKTKKKRGTYRGGLIDLHSHSVKFNYSDEE*