AlfalfaGEDB | Msa0118710

M. sativa cultivar zhongmu-4 / Msa0118710

KEGG: K02989
GO: GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00177.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118710	XP_013467694.1	99.163	239	2	0	1	239	1	239	6.72e-175	490

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118710	sp\|O65731\|RS5_CICAR	94.388	196	10	1	45	239	2	197	4.98e-133	375

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118710	A0A072VJE7	99.163	239	2	0	1	239	1	239	3.21e-175	490

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000100	Msa0118710	0.811624	6.377841e-51	-8.615850e-47
Msa0002750	Msa0118710	0.877957	4.139528e-69	-8.615850e-47
Msa0002790	Msa0118710	0.900779	5.206430e-78	-8.615850e-47
Msa0003720	Msa0118710	0.844472	7.403310e-59	-8.615850e-47
Msa0003780	Msa0118710	0.840725	7.312591e-58	-8.615850e-47
Msa0007850	Msa0118710	0.828233	1.007567e-54	-8.615850e-47
Msa0010490	Msa0118710	0.800325	1.519854e-48	-8.615850e-47
Msa0012940	Msa0118710	0.803617	3.200967e-49	-8.615850e-47
Msa0019390	Msa0118710	0.859756	3.319240e-63	-8.615850e-47
Msa0022970	Msa0118710	0.938115	1.145160e-98	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118710	MtrunA17_Chr1g0176261	99.163	239	2	0	1	239	1	239	6.18e-179	490
Msa0118710	MtrunA17_Chr7g0268431	97.000	200	4	1	40	239	9	206	8.09e-142	395

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118710	AT2G37270.1	92.105	190	14	1	51	239	18	207	4.07e-129	363
Msa0118710	AT2G37270.2	92.105	190	14	1	51	239	18	207	4.07e-129	363
Msa0118710	AT3G11940.1	90.000	190	18	1	51	239	18	207	2.62e-127	359
Msa0118710	AT3G11940.2	90.000	190	18	1	51	239	18	207	2.62e-127	359

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Find 68 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCATGGTTGGGAAAACT+TGG	0.397760	1_3:-41870634	None:intergenic
AAATGAACGAACCGTGATTG+TGG	0.654236	1_3:-41867208	None:intergenic
AACCGTGATTGTGGTGGATG+CGG	0.564962	1_3:-41867199	None:intergenic
AACTGACCAGAACCCAATTC+AGG	0.407467	1_3:+41868018	Msa0118710:CDS
AAGTCAAGCTCTTCAACCGC+TGG	0.503610	1_3:+41867358	Msa0118710:CDS
AATCATGGTTGGGAAAACTT+GGG	0.636613	1_3:-41870633	None:intergenic
AATTGTCTTAATATTTCTAA+AGG	0.421513	1_3:-41870092	None:intergenic
ACATATGTTCCACACACTGC+TGG	0.470002	1_3:+41867848	Msa0118710:CDS
ACCAGTAGTTAGAAGATAGA+TGG	0.466476	1_3:-41870056	None:intergenic
ACTAACTCTCTCATGATGCA+TGG	0.563337	1_3:+41867926	Msa0118710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAACAATGGATACAGAAA+AGG	-	chr1_3:41867259-41867278	None:intergenic	30.0%
AAACGAAGAATGAGAAACAA+TGG	-	chr1_3:41867271-41867290	None:intergenic	30.0%
ATTTCTATGTCTTTGTCTGT+TGG	+	chr1_3:41868359-41868378	Msa0118710:intron	30.0%
TTACTGGAATGATATGAGAA+TGG	-	chr1_3:41868559-41868578	None:intergenic	30.0%
AATACAAAATGCCATCATTC+TGG	-	chr1_3:41868875-41868894	None:intergenic	30.0%
TTAGATACAAACAAATGACC+TGG	-	chr1_3:41868926-41868945	None:intergenic	30.0%
AATACAATTTGCCATCATTC+TGG	-	chr1_3:41869253-41869272	None:intergenic	30.0%
TAAAAATGAACTGGGAGATA+AGG	-	chr1_3:41869295-41869314	None:intergenic	30.0%
CTATGCTTAAAAACCAAAGT+AGG	-	chr1_3:41869485-41869504	None:intergenic	30.0%
CAACCACTTACAGTAATATT+TGG	-	chr1_3:41869673-41869692	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	41867125	41870685	41867125	ID=Msa0118710;Name=Msa0118710
chr1_3	mRNA	41867125	41870685	41867125	ID=Msa0118710-mRNA-1;Parent=Msa0118710;Name=Msa0118710-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|1\|0.8\|1\|0.75\|0.6\|5\|350\|239
chr1_3	exon	41867125	41867218	41867125	ID=Msa0118710-mRNA-1:exon:12687;Parent=Msa0118710-mRNA-1
chr1_3	exon	41867301	41867398	41867301	ID=Msa0118710-mRNA-1:exon:12688;Parent=Msa0118710-mRNA-1
chr1_3	exon	41867797	41868065	41867797	ID=Msa0118710-mRNA-1:exon:12689;Parent=Msa0118710-mRNA-1
chr1_3	exon	41869964	41870167	41869964	ID=Msa0118710-mRNA-1:exon:12690;Parent=Msa0118710-mRNA-1
chr1_3	exon	41870281	41870685	41870281	ID=Msa0118710-mRNA-1:exon:12691;Parent=Msa0118710-mRNA-1
chr1_3	CDS	41867125	41867218	41867125	ID=Msa0118710-mRNA-1:cds;Parent=Msa0118710-mRNA-1
chr1_3	CDS	41867301	41867398	41867301	ID=Msa0118710-mRNA-1:cds;Parent=Msa0118710-mRNA-1
chr1_3	CDS	41867797	41868065	41867797	ID=Msa0118710-mRNA-1:cds;Parent=Msa0118710-mRNA-1
chr1_3	CDS	41869964	41870167	41869964	ID=Msa0118710-mRNA-1:cds;Parent=Msa0118710-mRNA-1
chr1_3	CDS	41870281	41870335	41870281	ID=Msa0118710-mRNA-1:cds;Parent=Msa0118710-mRNA-1
chr1_3	three_prime_UTR	41870336	41870685	41870336	ID=Msa0118710-mRNA-1:three_prime_utr;Parent=Msa0118710-mRNA-1

Gene Sequence

>Msa0118710

ATGAACCAATGCACCAAAATTAGGGTTTATCACATACCATACCTTCTCCATTCTCAGCAGCTTCAGTTTGGTTGCCGCATCCACCACAATCACGCCATGGCTGATGTCATTGAAGAACCTGTTGCAGTCGTTTCAGATCCAAACCTGATCGAAGTCAAGCTCTTCAACCGCTGGAGCTTCGATGACGTTCAGATTACTGATTTGTCTCTTGGGGATTACATTGGAGCAAGATCCAAGCATGCAACATATGTTCCACACACTGCTGGAAGATACTCGAAGAAGCGATTCAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTCACTAACTCTCTCATGATGCATGGGAGGAACAATGGAAAGAAGCTTATGGCTGTTAGGATCATCAAGCATGCTATGGAGATTATTCATTTGTTAACTGACCAGAACCCAATTCAGGTCATTGTTGATGCTGTCGTCAACAGTGGTCCTCGTGAAGATGCAACTCGTATTGGTTCTGCTGGAGTTGTAAGAAGACAGGCTGTGGATATCTCACCCCTTCGTCGTGTGAATCAAGCCATCTATCTTCTAACTACTGGTGCGCGTGAAGCAGCCTTTAGAAATATTAAGACAATTGCTGAATGTCTTGCTGATGAACTTATTAATGCAGCAAAAGGATCATCCAACAGCTATGCAATCAAGAAAAAAGATGAAATTGAAAGAGTTGCTAAGGCAAATCGTTAA

Protein sequence

>Msa0118710

MNQCTKIRVYHIPYLLHSQQLQFGCRIHHNHAMADVIEEPVAVVSDPNLIEVKLFNRWSFDDVQITDLSLGDYIGARSKHATYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR*