AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0118710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118710 MtrunA17_Chr1g0176261 99.163 239 2 0 1 239 1 239 6.18e-179 490
Msa0118710 MtrunA17_Chr7g0268431 97.000 200 4 1 40 239 9 206 8.09e-142 395
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118710 AT2G37270.1 92.105 190 14 1 51 239 18 207 4.07e-129 363
Msa0118710 AT2G37270.2 92.105 190 14 1 51 239 18 207 4.07e-129 363
Msa0118710 AT3G11940.1 90.000 190 18 1 51 239 18 207 2.62e-127 359
Msa0118710 AT3G11940.2 90.000 190 18 1 51 239 18 207 2.62e-127 359

Find 68 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACCAATGCACCAAAATT+AGG 0.162365 1_3:+41867126 Msa0118710:CDS
ATAATTTGAACGATGGTTTA+TGG 0.184873 1_3:+41870520 Msa0118710:three_prime_UTR
GCATCAACAATGACCTGAAT+TGG 0.291343 1_3:-41868031 None:intergenic
CTTTATAATAAACCATGATT+TGG 0.315654 1_3:-41870572 None:intergenic
CAGATTACTGATTTGTCTCT+TGG 0.315758 1_3:+41867794 Msa0118710:intron
CCATAAAACTTCATTAAATA+AGG 0.324325 1_3:-41870383 None:intergenic
GATACTCGAAGAAGCGATTC+AGG 0.331607 1_3:+41867873 Msa0118710:CDS
GAACCAATGCACCAAAATTA+GGG 0.331625 1_3:+41867127 Msa0118710:CDS
TAATTTGAACGATGGTTTAT+GGG 0.359202 1_3:+41870521 Msa0118710:three_prime_UTR
AGCTTGACTTCGATCAGGTT+TGG 0.359219 1_3:-41867345 None:intergenic
CATTCTCAGCAGCTTCAGTT+TGG 0.372538 1_3:+41867173 Msa0118710:CDS
CTGGAGCTTCGATGACGTTC+AGG 0.377509 1_3:+41867377 Msa0118710:CDS
CAATGACCTGAATTGGGTTC+TGG 0.383650 1_3:-41868024 None:intergenic
GGATCTGAAACGACTGCAAC+AGG 0.391313 1_3:-41867324 None:intergenic
AAATCATGGTTGGGAAAACT+TGG 0.397760 1_3:-41870634 None:intergenic
GAAAGAAGCTTATGGCTGTT+AGG 0.402629 1_3:+41867960 Msa0118710:CDS
AACTGACCAGAACCCAATTC+AGG 0.407467 1_3:+41868018 Msa0118710:CDS
AGATTACTGATTTGTCTCTT+GGG 0.409836 1_3:+41867795 Msa0118710:intron
AATTGTCTTAATATTTCTAA+AGG 0.421513 1_3:-41870092 None:intergenic
CAAACTGAAGCTGCTGAGAA+TGG 0.431599 1_3:-41867172 None:intergenic
GTTTCATATATGCCAAATCA+TGG 0.437423 1_3:+41870560 Msa0118710:three_prime_UTR
CGTGAAGATGCAACTCGTAT+TGG 0.440985 1_3:+41869971 Msa0118710:CDS
TTGTTGATGCTGTCGTCAAC+AGG 0.441734 1_3:+41868044 Msa0118710:CDS
GCCATCTATCTTCTAACTAC+TGG 0.451088 1_3:+41870055 Msa0118710:CDS
GAACTTATTAATGCAGCAAA+AGG 0.453667 1_3:+41870133 Msa0118710:CDS
TAAGGAGCTTGTTGCAGCAT+TGG 0.458758 1_3:+41870333 Msa0118710:exon
TATGTGATAAACCCTAATTT+TGG 0.461034 1_3:-41867138 None:intergenic
GAACAATGGAAAGAAGCTTA+TGG 0.462961 1_3:+41867952 Msa0118710:CDS
ACCAGTAGTTAGAAGATAGA+TGG 0.466476 1_3:-41870056 None:intergenic
ACATATGTTCCACACACTGC+TGG 0.470002 1_3:+41867848 Msa0118710:CDS
TGAAGAGCTTGACTTCGATC+AGG 0.472581 1_3:-41867350 None:intergenic
TGGAACATATGTTGCATGCT+TGG 0.475316 1_3:-41867837 None:intergenic
GTTGCTAAGGCAAATCGTTA+AGG 0.480990 1_3:+41870315 Msa0118710:CDS
GCAACTCGTATTGGTTCTGC+TGG 0.481223 1_3:+41869980 Msa0118710:CDS
CAGCAAAAGGATCATCCAAC+AGG 0.484289 1_3:+41870146 Msa0118710:CDS
AAGTCAAGCTCTTCAACCGC+TGG 0.503610 1_3:+41867358 Msa0118710:CDS
CATCAACAATGACCTGAATT+GGG 0.506610 1_3:-41868030 None:intergenic
TGCTGAGAATGGAGAAGGTA+TGG 0.510821 1_3:-41867161 None:intergenic
TTGTCTCTTGGGGATTACAT+TGG 0.513322 1_3:+41867806 Msa0118710:CDS
TGAAATTGAAAGAGTTGCTA+AGG 0.514135 1_3:+41870302 Msa0118710:CDS
GATTACTGATTTGTCTCTTG+GGG 0.515005 1_3:+41867796 Msa0118710:intron
GGCTTGATTCACACGACGAA+GGG 0.519901 1_3:-41870035 None:intergenic
TAATATGATAATTTGAACGA+TGG 0.522128 1_3:+41870513 Msa0118710:three_prime_UTR
GGCATATATGAAACATCGTT+AGG 0.522673 1_3:-41870551 None:intergenic
TGCTGGAGTTGTAAGAAGAC+AGG 0.532743 1_3:+41869997 Msa0118710:CDS
TTAGTGAGCCTCTCAACAAT+GGG 0.543323 1_3:-41867908 None:intergenic
TAGGATCATCAAGCATGCTA+TGG 0.558540 1_3:+41867979 Msa0118710:CDS
CTAACTCTCTCATGATGCAT+GGG 0.561374 1_3:+41867927 Msa0118710:CDS
GTTAGTGAGCCTCTCAACAA+TGG 0.562680 1_3:-41867909 None:intergenic
ACTAACTCTCTCATGATGCA+TGG 0.563337 1_3:+41867926 Msa0118710:CDS
AACCGTGATTGTGGTGGATG+CGG 0.564962 1_3:-41867199 None:intergenic
ATGATGCATGGGAGGAACAA+TGG 0.566550 1_3:+41867938 Msa0118710:CDS
AGTTGTAAGAAGACAGGCTG+TGG 0.574582 1_3:+41870003 Msa0118710:CDS
GAAGGTTGATAATCAAACAC+AGG 0.588182 1_3:-41870482 None:intergenic
CTCAGTGTCCCATTGTTGAG+AGG 0.591866 1_3:+41867900 Msa0118710:CDS
TTCTTCAATGACATCAGCCA+TGG 0.596830 1_3:-41867301 None:intergenic
TGCCGCATCCACCACAATCA+CGG 0.605390 1_3:+41867197 Msa0118710:CDS
GAGTATCTTCCAGCAGTGTG+TGG 0.612438 1_3:-41867857 None:intergenic
GAAGCTGCTGAGAATGGAGA+AGG 0.628653 1_3:-41867166 None:intergenic
AATCATGGTTGGGAAAACTT+GGG 0.636613 1_3:-41870633 None:intergenic
CAACGATAAAACAAAATCTG+AGG 0.644709 1_3:-41870358 None:intergenic
ACTCTCTCATGATGCATGGG+AGG 0.648954 1_3:+41867930 Msa0118710:CDS
TGAACGAACCGTGATTGTGG+TGG 0.652757 1_3:-41867205 None:intergenic
AAATGAACGAACCGTGATTG+TGG 0.654236 1_3:-41867208 None:intergenic
GAACGTCATCGAAGCTCCAG+CGG 0.655762 1_3:-41867374 None:intergenic
TGGCTTGATTCACACGACGA+AGG 0.656812 1_3:-41870036 None:intergenic
GCTTGATTCACACGACGAAG+GGG 0.665666 1_3:-41870034 None:intergenic
ATACGAGTTGCATCTTCACG+AGG 0.709806 1_3:-41869968 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTGTGAAATTT+TGG + chr1_3:41867649-41867668 Msa0118710:intron 10.0%
!!! ATTTTTTTCTTTCAATTAAT+TGG + chr1_3:41867709-41867728 Msa0118710:intron 10.0%
!!! TCAATTTTTATTTTATTTTC+TGG + chr1_3:41868133-41868152 Msa0118710:intron 10.0%
!! AGATATTAAAAACAATTAAC+TGG - chr1_3:41868260-41868279 None:intergenic 15.0%
!! TAATATCTTATTAGATATTG+TGG + chr1_3:41868272-41868291 Msa0118710:intron 15.0%
!! GTTATAATAAATAAACACTT+TGG + chr1_3:41868329-41868348 Msa0118710:intron 15.0%
!!! TAATATTAACTTTATTTAGC+TGG - chr1_3:41869091-41869110 None:intergenic 15.0%
!! ATTGAAAATAAAAATGAACT+GGG - chr1_3:41869303-41869322 None:intergenic 15.0%
!! AATTGAAAATAAAAATGAAC+TGG - chr1_3:41869304-41869323 None:intergenic 15.0%
!! AATTATGAAACAGTAATATT+TGG - chr1_3:41869894-41869913 None:intergenic 15.0%
!!! AATTGTCTTAATATTTCTAA+AGG - chr1_3:41870095-41870114 None:intergenic 15.0%
!!! CTTATTTAATGAAGTTTTAT+GGG + chr1_3:41870384-41870403 Msa0118710:three_prime_UTR 15.0%
!!! TATCATATTATAACTTTTGA+AGG - chr1_3:41870503-41870522 None:intergenic 15.0%
!!! AATTGGATTTTATTGTGTTT+TGG + chr1_3:41867570-41867589 Msa0118710:intron 20.0%
!!! GTGTTTTTTGTTAATAATGT+TGG + chr1_3:41867751-41867770 Msa0118710:intron 20.0%
!!! TTTTATTTTCTGGTTTGATA+TGG + chr1_3:41868143-41868162 Msa0118710:intron 20.0%
!!! TTCTGTTTTTAGATTTTTTC+TGG + chr1_3:41868447-41868466 Msa0118710:intron 20.0%
!! CATAAATAAACAATTGCAAT+TGG + chr1_3:41868665-41868684 Msa0118710:intron 20.0%
!!! ATGAATATTTGTTTTCCTAT+TGG + chr1_3:41868841-41868860 Msa0118710:intron 20.0%
!! TTAGAAATCAATCAGAAATA+TGG + chr1_3:41868946-41868965 Msa0118710:intron 20.0%
!! TAGAAATCAATCAGAAATAT+GGG + chr1_3:41868947-41868966 Msa0118710:intron 20.0%
!!! ATGAATAATTTGTATCCTAT+TGG + chr1_3:41869219-41869238 Msa0118710:intron 20.0%
!! TTCAATTTATAACAAGACTT+TGG + chr1_3:41869317-41869336 Msa0118710:intron 20.0%
!! AATCATAATTTCATTCATTG+AGG - chr1_3:41869614-41869633 None:intergenic 20.0%
!! AGTAATATTTGATTCATAAC+AGG - chr1_3:41869845-41869864 None:intergenic 20.0%
!!! CTGTTTCATAATTTTGAATT+TGG + chr1_3:41869901-41869920 Msa0118710:intron 20.0%
!! CCATAAAACTTCATTAAATA+AGG - chr1_3:41870386-41870405 None:intergenic 20.0%
!!! CCTTATTTAATGAAGTTTTA+TGG + chr1_3:41870383-41870402 Msa0118710:three_prime_UTR 20.0%
!! TAATATGATAATTTGAACGA+TGG + chr1_3:41870513-41870532 Msa0118710:three_prime_UTR 20.0%
!! CTTTATAATAAACCATGATT+TGG - chr1_3:41870575-41870594 None:intergenic 20.0%
!! TATGTGATAAACCCTAATTT+TGG - chr1_3:41867141-41867160 None:intergenic 25.0%
!!! ATGAATTTTTGTTTCCCTAT+TGG + chr1_3:41868177-41868196 Msa0118710:intron 25.0%
! AAACAATTAACTGGAATGAT+AGG - chr1_3:41868251-41868270 None:intergenic 25.0%
! TAGTTATTGTGATTGTGATT+AGG + chr1_3:41868421-41868440 Msa0118710:intron 25.0%
!!! AGATTTTTTCTGGTTTGATA+CGG + chr1_3:41868457-41868476 Msa0118710:intron 25.0%
! ATGAATATTTGTTTCCCTAT+TGG + chr1_3:41868491-41868510 Msa0118710:intron 25.0%
! TAAAACAAATTGCATCATTC+TGG - chr1_3:41868525-41868544 None:intergenic 25.0%
! GAAACTTAAAAGTTCATTAC+TGG - chr1_3:41868575-41868594 None:intergenic 25.0%
! ATTCTCGTGTATTTATTGTT+TGG + chr1_3:41868797-41868816 Msa0118710:intron 25.0%
!!! GATGTTTTTATGTACTTGTT+TGG + chr1_3:41869167-41869186 Msa0118710:intron 25.0%
! ATCAAAACTCATGAAATGTA+AGG - chr1_3:41869433-41869452 None:intergenic 25.0%
! ATTTGATGTTAAACCTACTT+TGG + chr1_3:41869469-41869488 Msa0118710:intron 25.0%
! TGATATGTAAATAACAACCT+CGG - chr1_3:41869729-41869748 None:intergenic 25.0%
! TGTTTAACTGTTGCAATTTA+TGG + chr1_3:41869769-41869788 Msa0118710:intron 25.0%
!!! AATTTGGATCTGATTTGTTT+TGG + chr1_3:41869917-41869936 Msa0118710:intron 25.0%
! ATAATTTGAACGATGGTTTA+TGG + chr1_3:41870520-41870539 Msa0118710:three_prime_UTR 25.0%
! TAATTTGAACGATGGTTTAT+GGG + chr1_3:41870521-41870540 Msa0118710:three_prime_UTR 25.0%
!!! AAAACTGAAGTCTTTGTTTT+TGG + chr1_3:41870660-41870679 Msa0118710:three_prime_UTR 25.0%
AGAAACAATGGATACAGAAA+AGG - chr1_3:41867259-41867278 None:intergenic 30.0%
AAACGAAGAATGAGAAACAA+TGG - chr1_3:41867271-41867290 None:intergenic 30.0%
!! AGATTACTGATTTGTCTCTT+GGG + chr1_3:41867795-41867814 Msa0118710:intron 30.0%
! TATGAATCGTTGATTGTTGA+TGG + chr1_3:41868067-41868086 Msa0118710:intron 30.0%
!!! TATTTTCTGGTTTGATATGG+AGG + chr1_3:41868146-41868165 Msa0118710:intron 30.0%
ATTTCTATGTCTTTGTCTGT+TGG + chr1_3:41868359-41868378 Msa0118710:intron 30.0%
TTACTGGAATGATATGAGAA+TGG - chr1_3:41868559-41868578 None:intergenic 30.0%
!! ATTTATTGTTTGGCTTGGAA+TGG + chr1_3:41868807-41868826 Msa0118710:intron 30.0%
AATACAAAATGCCATCATTC+TGG - chr1_3:41868875-41868894 None:intergenic 30.0%
TTAGATACAAACAAATGACC+TGG - chr1_3:41868926-41868945 None:intergenic 30.0%
AATACAATTTGCCATCATTC+TGG - chr1_3:41869253-41869272 None:intergenic 30.0%
TAAAAATGAACTGGGAGATA+AGG - chr1_3:41869295-41869314 None:intergenic 30.0%
CTATGCTTAAAAACCAAAGT+AGG - chr1_3:41869485-41869504 None:intergenic 30.0%
! ATGATTGGTTATTTCCCTAT+TGG + chr1_3:41869537-41869556 Msa0118710:intron 30.0%
CAACCACTTACAGTAATATT+TGG - chr1_3:41869673-41869692 None:intergenic 30.0%
! CAGTTAAACACAACACTTTT+GGG - chr1_3:41869759-41869778 None:intergenic 30.0%
! ACAGTTAAACACAACACTTT+TGG - chr1_3:41869760-41869779 None:intergenic 30.0%
GAACTTATTAATGCAGCAAA+AGG + chr1_3:41870133-41870152 Msa0118710:CDS 30.0%
! ATTTGTAAAAGCATACCTGT+TGG - chr1_3:41870164-41870183 None:intergenic 30.0%
! CAAATTTTATACCTGTACAC+AGG + chr1_3:41870179-41870198 Msa0118710:intron 30.0%
CACGAGATGAAAAATATTCA+TGG - chr1_3:41870212-41870231 None:intergenic 30.0%
TGAAATTGAAAGAGTTGCTA+AGG + chr1_3:41870302-41870321 Msa0118710:CDS 30.0%
CAACGATAAAACAAAATCTG+AGG - chr1_3:41870361-41870380 None:intergenic 30.0%
GTTTCATATATGCCAAATCA+TGG + chr1_3:41870560-41870579 Msa0118710:three_prime_UTR 30.0%
!! AGTTTTAGCAAATCATGGTT+GGG - chr1_3:41870646-41870665 None:intergenic 30.0%
!! ACTTCAGTTTTAGCAAATCA+TGG - chr1_3:41870651-41870670 None:intergenic 30.0%
TGAACCAATGCACCAAAATT+AGG + chr1_3:41867126-41867145 Msa0118710:CDS 35.0%
GAACCAATGCACCAAAATTA+GGG + chr1_3:41867127-41867146 Msa0118710:CDS 35.0%
!! AAACCCTAATTTTGGTGCAT+TGG - chr1_3:41867133-41867152 None:intergenic 35.0%
CAAGAGACAAATCAGTAATC+TGG - chr1_3:41867796-41867815 None:intergenic 35.0%
!! CAGATTACTGATTTGTCTCT+TGG + chr1_3:41867794-41867813 Msa0118710:intron 35.0%
!! GATTACTGATTTGTCTCTTG+GGG + chr1_3:41867796-41867815 Msa0118710:intron 35.0%
GAACAATGGAAAGAAGCTTA+TGG + chr1_3:41867952-41867971 Msa0118710:CDS 35.0%
CATCAACAATGACCTGAATT+GGG - chr1_3:41868033-41868052 None:intergenic 35.0%
TAACTGGAATGATAGGAGAA+TGG - chr1_3:41868244-41868263 None:intergenic 35.0%
ATGACTAGTAATGACTGTTG+AGG + chr1_3:41868602-41868621 Msa0118710:intron 35.0%
!! GTGTTTGTGTACTTTTTGTC+TGG + chr1_3:41868726-41868745 Msa0118710:intron 35.0%
!! TGTGTACTTTTTGTCTGGTT+TGG + chr1_3:41868731-41868750 Msa0118710:intron 35.0%
!!! ACTTTTTGTCTGGTTTGGAA+TGG + chr1_3:41868736-41868755 Msa0118710:intron 35.0%
CGTGTATTTATTGTTTGGCT+TGG + chr1_3:41868802-41868821 Msa0118710:intron 35.0%
AACAAATGACCTGGAATGTT+AGG - chr1_3:41868917-41868936 None:intergenic 35.0%
AGAACAGTGACAATTGTAGT+TGG + chr1_3:41869503-41869522 Msa0118710:intron 35.0%
TTGGAGAATGACATGATGAT+TGG + chr1_3:41869522-41869541 Msa0118710:intron 35.0%
ATACATAAATGCCATCATCC+AGG - chr1_3:41869571-41869590 None:intergenic 35.0%
GCACCAAATATTACTGTAAG+TGG + chr1_3:41869667-41869686 Msa0118710:intron 35.0%
GACATGTCAAGAAAAGCAAA+AGG - chr1_3:41869823-41869842 None:intergenic 35.0%
ACCAGTAGTTAGAAGATAGA+TGG - chr1_3:41870059-41870078 None:intergenic 35.0%
GTGTACGCAAACAAAAATCT+AGG - chr1_3:41870419-41870438 None:intergenic 35.0%
!! GAAGGTTGATAATCAAACAC+AGG - chr1_3:41870485-41870504 None:intergenic 35.0%
! AACGATGGTTTATGGGTTTT+TGG + chr1_3:41870528-41870547 Msa0118710:three_prime_UTR 35.0%
GGCATATATGAAACATCGTT+AGG - chr1_3:41870554-41870573 None:intergenic 35.0%
AATCATGGTTGGGAAAACTT+GGG - chr1_3:41870636-41870655 None:intergenic 35.0%
AAATCATGGTTGGGAAAACT+TGG - chr1_3:41870637-41870656 None:intergenic 35.0%
!! CAGTTTTAGCAAATCATGGT+TGG - chr1_3:41870647-41870666 None:intergenic 35.0%
AAATGAACGAACCGTGATTG+TGG - chr1_3:41867211-41867230 None:intergenic 40.0%
CGAAGATTCGAAGAATCTGA+AGG - chr1_3:41867234-41867253 None:intergenic 40.0%
TTCTTCAATGACATCAGCCA+TGG - chr1_3:41867304-41867323 None:intergenic 40.0%
TTGTCTCTTGGGGATTACAT+TGG + chr1_3:41867806-41867825 Msa0118710:CDS 40.0%
TGGAACATATGTTGCATGCT+TGG - chr1_3:41867840-41867859 None:intergenic 40.0%
TTAGTGAGCCTCTCAACAAT+GGG - chr1_3:41867911-41867930 None:intergenic 40.0%
ACTAACTCTCTCATGATGCA+TGG + chr1_3:41867926-41867945 Msa0118710:CDS 40.0%
CTAACTCTCTCATGATGCAT+GGG + chr1_3:41867927-41867946 Msa0118710:CDS 40.0%
GAAAGAAGCTTATGGCTGTT+AGG + chr1_3:41867960-41867979 Msa0118710:CDS 40.0%
TAGGATCATCAAGCATGCTA+TGG + chr1_3:41867979-41867998 Msa0118710:CDS 40.0%
GCATCAACAATGACCTGAAT+TGG - chr1_3:41868034-41868053 None:intergenic 40.0%
!! TTCTGGTTTGATATGGAGGA+TGG + chr1_3:41868150-41868169 Msa0118710:intron 40.0%
CTCTTGCAGTCAAACCAATA+GGG - chr1_3:41868194-41868213 None:intergenic 40.0%
ACTCTTGCAGTCAAACCAAT+AGG - chr1_3:41868195-41868214 None:intergenic 40.0%
!! TTCTGGTTTGATACGGAGAA+TGG + chr1_3:41868464-41868483 Msa0118710:intron 40.0%
TTCTGGCAGTCAAACCAATA+GGG - chr1_3:41868508-41868527 None:intergenic 40.0%
ATTCTGGCAGTCAAACCAAT+AGG - chr1_3:41868509-41868528 None:intergenic 40.0%
!!! TTTTGTCTGGTTTGGAATGG+TGG + chr1_3:41868739-41868758 Msa0118710:intron 40.0%
!! TATTGTTTGGCTTGGAATGG+AGG + chr1_3:41868810-41868829 Msa0118710:intron 40.0%
ATTCTGGCAGTCAAACCAAT+AGG - chr1_3:41868509-41868528 None:intergenic 40.0%
TATGTACTTGTTTGGCACTC+TGG + chr1_3:41869175-41869194 Msa0118710:intron 40.0%
ACAATTTGCCATCATTCTGG+CGG - chr1_3:41869250-41869269 None:intergenic 40.0%
AAATGAACTGGGAGATAAGG+TGG - chr1_3:41869292-41869311 None:intergenic 40.0%
CCAACAACATCTTCTGCAAA+GGG - chr1_3:41869389-41869408 None:intergenic 40.0%
TCCAACAACATCTTCTGCAA+AGG - chr1_3:41869390-41869409 None:intergenic 40.0%
TCCAGGCAATCAATCCAATA+GGG - chr1_3:41869554-41869573 None:intergenic 40.0%
ATCCAGGCAATCAATCCAAT+AGG - chr1_3:41869555-41869574 None:intergenic 40.0%
!! CGCTTGTGTCATTTGTATAG+TGG + chr1_3:41869944-41869963 Msa0118710:intron 40.0%
GCCATCTATCTTCTAACTAC+TGG + chr1_3:41870055-41870074 Msa0118710:CDS 40.0%
GTTGCTAAGGCAAATCGTTA+AGG + chr1_3:41870315-41870334 Msa0118710:CDS 40.0%
TGCTGAGAATGGAGAAGGTA+TGG - chr1_3:41867164-41867183 None:intergenic 45.0%
CAAACTGAAGCTGCTGAGAA+TGG - chr1_3:41867175-41867194 None:intergenic 45.0%
CATTCTCAGCAGCTTCAGTT+TGG + chr1_3:41867173-41867192 Msa0118710:CDS 45.0%
TTCGTTTCTCTATGCAGCCA+TGG + chr1_3:41867284-41867303 Msa0118710:intron 45.0%
AGCTTGACTTCGATCAGGTT+TGG - chr1_3:41867348-41867367 None:intergenic 45.0%
TGAAGAGCTTGACTTCGATC+AGG - chr1_3:41867353-41867372 None:intergenic 45.0%
ACATATGTTCCACACACTGC+TGG + chr1_3:41867848-41867867 Msa0118710:CDS 45.0%
GATACTCGAAGAAGCGATTC+AGG + chr1_3:41867873-41867892 Msa0118710:CDS 45.0%
GTTAGTGAGCCTCTCAACAA+TGG - chr1_3:41867912-41867931 None:intergenic 45.0%
ATGATGCATGGGAGGAACAA+TGG + chr1_3:41867938-41867957 Msa0118710:CDS 45.0%
AACTGACCAGAACCCAATTC+AGG + chr1_3:41868018-41868037 Msa0118710:CDS 45.0%
CAATGACCTGAATTGGGTTC+TGG - chr1_3:41868027-41868046 None:intergenic 45.0%
TTGTTGATGCTGTCGTCAAC+AGG + chr1_3:41868044-41868063 Msa0118710:CDS 45.0%
TGGTTTGACTGCCAGAATGA+TGG + chr1_3:41868511-41868530 Msa0118710:intron 45.0%
GACCATTCTCCTAACATTCC+AGG + chr1_3:41868905-41868924 Msa0118710:intron 45.0%
GACCTGGAATGTTAGGAGAA+TGG - chr1_3:41868910-41868929 None:intergenic 45.0%
!! CTCTGGCTTGATTTGTAGGA+TGG + chr1_3:41869192-41869211 Msa0118710:intron 45.0%
ATTCTGGCGGTCAAACCAAT+AGG - chr1_3:41869237-41869256 None:intergenic 45.0%
CCCTTTGCAGAAGATGTTGT+TGG + chr1_3:41869386-41869405 Msa0118710:intron 45.0%
TCCCTATTGGATTGATTGCC+TGG + chr1_3:41869550-41869569 Msa0118710:intron 45.0%
TGGATTGATTGCCTGGATGA+TGG + chr1_3:41869557-41869576 Msa0118710:intron 45.0%
CGGAAAATACACAGCTAGCA+TGG - chr1_3:41869709-41869728 None:intergenic 45.0%
! TGCTAGCTGTGTATTTTCCG+AGG + chr1_3:41869709-41869728 Msa0118710:intron 45.0%
ATACGAGTTGCATCTTCACG+AGG - chr1_3:41869971-41869990 None:intergenic 45.0%
CGTGAAGATGCAACTCGTAT+TGG + chr1_3:41869971-41869990 Msa0118710:CDS 45.0%
TGCTGGAGTTGTAAGAAGAC+AGG + chr1_3:41869997-41870016 Msa0118710:CDS 45.0%
AGTTGTAAGAAGACAGGCTG+TGG + chr1_3:41870003-41870022 Msa0118710:CDS 45.0%
CAGCAAAAGGATCATCCAAC+AGG + chr1_3:41870146-41870165 Msa0118710:CDS 45.0%
!! TAAGGAGCTTGTTGCAGCAT+TGG + chr1_3:41870333-41870352 Msa0118710:exon 45.0%
!!! TTTTTTTTATTTCAATTAAT+TGG + chr1_3:41867553-41867572 Msa0118710:intron 5.0%
GAAGCTGCTGAGAATGGAGA+AGG - chr1_3:41867169-41867188 None:intergenic 50.0%
!! AACCGTGATTGTGGTGGATG+CGG - chr1_3:41867202-41867221 None:intergenic 50.0%
TGAACGAACCGTGATTGTGG+TGG - chr1_3:41867208-41867227 None:intergenic 50.0%
! GGATCTGAAACGACTGCAAC+AGG - chr1_3:41867327-41867346 None:intergenic 50.0%
AAGTCAAGCTCTTCAACCGC+TGG + chr1_3:41867358-41867377 Msa0118710:CDS 50.0%
GAGTATCTTCCAGCAGTGTG+TGG - chr1_3:41867860-41867879 None:intergenic 50.0%
CTCAGTGTCCCATTGTTGAG+AGG + chr1_3:41867900-41867919 Msa0118710:CDS 50.0%
ACTCTCTCATGATGCATGGG+AGG + chr1_3:41867930-41867949 Msa0118710:CDS 50.0%
!! GTTTGGCTTGGAATGGAGGA+TGG + chr1_3:41868814-41868833 Msa0118710:intron 50.0%
!! GGCACTCTGGCTTGATTTGT+AGG + chr1_3:41869188-41869207 Msa0118710:intron 50.0%
TGGTTTGACCGCCAGAATGA+TGG + chr1_3:41869239-41869258 Msa0118710:intron 50.0%
GAACTGGGAGATAAGGTGGA+TGG - chr1_3:41869288-41869307 None:intergenic 50.0%
!! GCAACTCGTATTGGTTCTGC+TGG + chr1_3:41869980-41869999 Msa0118710:CDS 50.0%
GCTTGATTCACACGACGAAG+GGG - chr1_3:41870037-41870056 None:intergenic 50.0%
GGCTTGATTCACACGACGAA+GGG - chr1_3:41870038-41870057 None:intergenic 50.0%
TGGCTTGATTCACACGACGA+AGG - chr1_3:41870039-41870058 None:intergenic 50.0%
ATGGAAGACTGCCTGTGTAC+AGG - chr1_3:41870193-41870212 None:intergenic 50.0%
TGCCGCATCCACCACAATCA+CGG + chr1_3:41867197-41867216 Msa0118710:CDS 55.0%
GAACGTCATCGAAGCTCCAG+CGG - chr1_3:41867377-41867396 None:intergenic 55.0%
CTGGAGCTTCGATGACGTTC+AGG + chr1_3:41867377-41867396 Msa0118710:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 41867125 41870685 41867125 ID=Msa0118710;Name=Msa0118710
chr1_3 mRNA 41867125 41870685 41867125 ID=Msa0118710-mRNA-1;Parent=Msa0118710;Name=Msa0118710-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|1|0.8|1|0.75|0.6|5|350|239
chr1_3 exon 41867125 41867218 41867125 ID=Msa0118710-mRNA-1:exon:12687;Parent=Msa0118710-mRNA-1
chr1_3 exon 41867301 41867398 41867301 ID=Msa0118710-mRNA-1:exon:12688;Parent=Msa0118710-mRNA-1
chr1_3 exon 41867797 41868065 41867797 ID=Msa0118710-mRNA-1:exon:12689;Parent=Msa0118710-mRNA-1
chr1_3 exon 41869964 41870167 41869964 ID=Msa0118710-mRNA-1:exon:12690;Parent=Msa0118710-mRNA-1
chr1_3 exon 41870281 41870685 41870281 ID=Msa0118710-mRNA-1:exon:12691;Parent=Msa0118710-mRNA-1
chr1_3 CDS 41867125 41867218 41867125 ID=Msa0118710-mRNA-1:cds;Parent=Msa0118710-mRNA-1
chr1_3 CDS 41867301 41867398 41867301 ID=Msa0118710-mRNA-1:cds;Parent=Msa0118710-mRNA-1
chr1_3 CDS 41867797 41868065 41867797 ID=Msa0118710-mRNA-1:cds;Parent=Msa0118710-mRNA-1
chr1_3 CDS 41869964 41870167 41869964 ID=Msa0118710-mRNA-1:cds;Parent=Msa0118710-mRNA-1
chr1_3 CDS 41870281 41870335 41870281 ID=Msa0118710-mRNA-1:cds;Parent=Msa0118710-mRNA-1
chr1_3 three_prime_UTR 41870336 41870685 41870336 ID=Msa0118710-mRNA-1:three_prime_utr;Parent=Msa0118710-mRNA-1
Gene Sequence

>Msa0118710

ATGAACCAATGCACCAAAATTAGGGTTTATCACATACCATACCTTCTCCATTCTCAGCAGCTTCAGTTTGGTTGCCGCATCCACCACAATCACGCCATGGCTGATGTCATTGAAGAACCTGTTGCAGTCGTTTCAGATCCAAACCTGATCGAAGTCAAGCTCTTCAACCGCTGGAGCTTCGATGACGTTCAGATTACTGATTTGTCTCTTGGGGATTACATTGGAGCAAGATCCAAGCATGCAACATATGTTCCACACACTGCTGGAAGATACTCGAAGAAGCGATTCAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTCACTAACTCTCTCATGATGCATGGGAGGAACAATGGAAAGAAGCTTATGGCTGTTAGGATCATCAAGCATGCTATGGAGATTATTCATTTGTTAACTGACCAGAACCCAATTCAGGTCATTGTTGATGCTGTCGTCAACAGTGGTCCTCGTGAAGATGCAACTCGTATTGGTTCTGCTGGAGTTGTAAGAAGACAGGCTGTGGATATCTCACCCCTTCGTCGTGTGAATCAAGCCATCTATCTTCTAACTACTGGTGCGCGTGAAGCAGCCTTTAGAAATATTAAGACAATTGCTGAATGTCTTGCTGATGAACTTATTAATGCAGCAAAAGGATCATCCAACAGCTATGCAATCAAGAAAAAAGATGAAATTGAAAGAGTTGCTAAGGCAAATCGTTAA

Protein sequence

>Msa0118710

MNQCTKIRVYHIPYLLHSQQLQFGCRIHHNHAMADVIEEPVAVVSDPNLIEVKLFNRWSFDDVQITDLSLGDYIGARSKHATYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR*