Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305050 | NP_001365649.1 | 84.475 | 219 | 2 | 1 | 1 | 219 | 1 | 187 | 6.70e-123 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305050 | sp|O65729|RL18_CICAR | 73.611 | 216 | 24 | 1 | 4 | 219 | 1 | 183 | 1.21e-106 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305050 | B7FMF5 | 84.475 | 219 | 2 | 1 | 1 | 219 | 1 | 187 | 3.20e-123 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa1305050 | 0.849795 | 2.571299e-60 | -8.615850e-47 |
| Msa0002790 | Msa1305050 | 0.860220 | 2.403467e-63 | -8.615850e-47 |
| Msa0003780 | Msa1305050 | 0.825747 | 3.961019e-54 | -8.615850e-47 |
| Msa0006910 | Msa1305050 | 0.811440 | 6.992509e-51 | -8.615850e-47 |
| Msa0022970 | Msa1305050 | 0.827234 | 1.750868e-54 | -8.615850e-47 |
| Msa0027260 | Msa1305050 | 0.839505 | 1.522394e-57 | -8.615850e-47 |
| Msa0040690 | Msa1305050 | 0.819404 | 1.182343e-52 | -8.615850e-47 |
| Msa0042280 | Msa1305050 | 0.871499 | 6.524323e-67 | -8.615850e-47 |
| Msa0045730 | Msa1305050 | 0.828185 | 1.034687e-54 | -8.615850e-47 |
| Msa0047160 | Msa1305050 | 0.827137 | 1.847265e-54 | -8.615850e-47 |
| Msa0048180 | Msa1305050 | 0.816190 | 6.284003e-52 | -8.615850e-47 |
| Msa0049370 | Msa1305050 | 0.816706 | 4.815508e-52 | -8.615850e-47 |
| Msa0052610 | Msa1305050 | 0.818099 | 2.338790e-52 | -8.615850e-47 |
| Msa0056470 | Msa1305050 | 0.811183 | 7.950478e-51 | -8.615850e-47 |
| Msa0074030 | Msa1305050 | 0.805429 | 1.340682e-49 | -8.615850e-47 |
| Msa0074320 | Msa1305050 | 0.818466 | 1.931440e-52 | -8.615850e-47 |
| Msa0082280 | Msa1305050 | 0.806125 | 9.572369e-50 | -8.615850e-47 |
| Msa0086750 | Msa1305050 | 0.819680 | 1.022853e-52 | -8.615850e-47 |
| Msa0091880 | Msa1305050 | 0.819960 | 8.826182e-53 | -8.615850e-47 |
| Msa0094470 | Msa1305050 | 0.830553 | 2.751897e-55 | -8.615850e-47 |
| Msa0097600 | Msa1305050 | 0.805409 | 1.353786e-49 | -8.615850e-47 |
| Msa0116130 | Msa1305050 | 0.823093 | 1.667522e-53 | -8.615850e-47 |
| Msa0116670 | Msa1305050 | 0.827316 | 1.673559e-54 | -8.615850e-47 |
| Msa0118710 | Msa1305050 | 0.849081 | 4.066206e-60 | -8.615850e-47 |
| Msa0602920 | Msa1305050 | 0.807802 | 4.230887e-50 | -8.615850e-47 |
| Msa0603320 | Msa1305050 | 0.836319 | 1.003500e-56 | -8.615850e-47 |
| Msa0608320 | Msa1305050 | 0.815702 | 8.072585e-52 | -8.615850e-47 |
| Msa0615440 | Msa1305050 | 0.808152 | 3.563933e-50 | -8.615850e-47 |
| Msa0615580 | Msa1305050 | 0.815298 | 9.931011e-52 | -8.615850e-47 |
| Msa0621950 | Msa1305050 | 0.902153 | 1.296940e-78 | -8.615850e-47 |
| Msa0622750 | Msa1305050 | 0.812860 | 3.427970e-51 | -8.615850e-47 |
| Msa0623200 | Msa1305050 | 0.834925 | 2.260037e-56 | -8.615850e-47 |
| Msa0661300 | Msa1305050 | 0.835191 | 1.937339e-56 | -8.615850e-47 |
| Msa0666230 | Msa1305050 | 0.812540 | 4.027567e-51 | -8.615850e-47 |
| Msa0669520 | Msa1305050 | 0.816010 | 6.893945e-52 | -8.615850e-47 |
| Msa0688850 | Msa1305050 | 0.824589 | 7.438229e-54 | -8.615850e-47 |
| Msa0698490 | Msa1305050 | 0.807371 | 5.222458e-50 | -8.615850e-47 |
| Msa0698660 | Msa1305050 | 0.808573 | 2.898792e-50 | -8.615850e-47 |
| Msa0698780 | Msa1305050 | 0.811741 | 6.014468e-51 | -8.615850e-47 |
| Msa0712610 | Msa1305050 | 0.812982 | 3.223050e-51 | -8.615850e-47 |
| Msa0729200 | Msa1305050 | 0.819288 | 1.256458e-52 | -8.615850e-47 |
| Msa0738100 | Msa1305050 | 0.850016 | 2.229256e-60 | -8.615850e-47 |
| Msa0769590 | Msa1305050 | 0.828255 | 9.949670e-55 | -8.615850e-47 |
| Msa0780490 | Msa1305050 | 0.815047 | 1.128925e-51 | -8.615850e-47 |
| Msa0785130 | Msa1305050 | 0.853941 | 1.712918e-61 | -8.615850e-47 |
| Msa0792760 | Msa1305050 | 0.813638 | 2.312837e-51 | -8.615850e-47 |
| Msa0806880 | Msa1305050 | 0.841577 | 4.368314e-58 | -8.615850e-47 |
| Msa0817540 | Msa1305050 | 0.864010 | 1.653319e-64 | -8.615850e-47 |
| Msa0127310 | Msa1305050 | 0.803278 | 3.762608e-49 | -8.615850e-47 |
| Msa0128860 | Msa1305050 | 0.852514 | 4.391501e-61 | -8.615850e-47 |
| Msa0133540 | Msa1305050 | 0.833462 | 5.259953e-56 | -8.615850e-47 |
| Msa0140820 | Msa1305050 | 0.801028 | 1.092257e-48 | -8.615850e-47 |
| Msa0146340 | Msa1305050 | 0.829369 | 5.350784e-55 | -8.615850e-47 |
| Msa0163760 | Msa1305050 | 0.826271 | 2.973739e-54 | -8.615850e-47 |
| Msa0167480 | Msa1305050 | 0.853611 | 2.131526e-61 | -8.615850e-47 |
| Msa0173530 | Msa1305050 | 0.827665 | 1.380213e-54 | -8.615850e-47 |
| Msa0174730 | Msa1305050 | 0.849308 | 3.513696e-60 | -8.615850e-47 |
| Msa0174770 | Msa1305050 | 0.802580 | 5.244126e-49 | -8.615850e-47 |
| Msa0181490 | Msa1305050 | 0.814235 | 1.708159e-51 | -8.615850e-47 |
| Msa0187690 | Msa1305050 | 0.818569 | 1.830931e-52 | -8.615850e-47 |
| Msa0187930 | Msa1305050 | 0.817944 | 2.535180e-52 | -8.615850e-47 |
| Msa0189700 | Msa1305050 | 0.824871 | 6.380958e-54 | -8.615850e-47 |
| Msa0194540 | Msa1305050 | 0.806186 | 9.293831e-50 | -8.615850e-47 |
| Msa0199690 | Msa1305050 | 0.817385 | 3.390045e-52 | -8.615850e-47 |
| Msa0210360 | Msa1305050 | 0.804464 | 2.133094e-49 | -8.615850e-47 |
| Msa0218830 | Msa1305050 | 0.815816 | 7.616310e-52 | -8.615850e-47 |
| Msa0221030 | Msa1305050 | 0.858953 | 5.779389e-63 | -8.615850e-47 |
| Msa0230490 | Msa1305050 | 0.812399 | 4.323832e-51 | -8.615850e-47 |
| Msa0231100 | Msa1305050 | 0.838194 | 3.324199e-57 | -8.615850e-47 |
| Msa0232010 | Msa1305050 | 0.822986 | 1.766185e-53 | -8.615850e-47 |
| Msa0232080 | Msa1305050 | 0.824293 | 8.730046e-54 | -8.615850e-47 |
| Msa1257510 | Msa1305050 | 0.835564 | 1.559445e-56 | -8.615850e-47 |
| Msa1265630 | Msa1305050 | 0.827580 | 1.446251e-54 | -8.615850e-47 |
| Msa1305050 | Msa1331710 | 0.817929 | 2.554879e-52 | -8.615850e-47 |
| Msa1305050 | Msa1332250 | 0.803715 | 3.054187e-49 | -8.615850e-47 |
| Msa1305050 | Msa1338190 | 0.823833 | 1.119214e-53 | -8.615850e-47 |
| Msa1305050 | Msa1343260 | 0.846568 | 2.001702e-59 | -8.615850e-47 |
| Msa1305050 | Msa1349570 | 0.842679 | 2.232108e-58 | -8.615850e-47 |
| Msa1305050 | Msa1356790 | 0.811993 | 5.300889e-51 | -8.615850e-47 |
| Msa1305050 | Msa1363330 | 0.860980 | 1.414614e-63 | -8.615850e-47 |
| Msa1305050 | Msa1366180 | 0.839924 | 1.184105e-57 | -8.615850e-47 |
| Msa1305050 | Msa1369190 | 0.821287 | 4.375209e-53 | -8.615850e-47 |
| Msa1305050 | Msa1370860 | 0.807292 | 5.428686e-50 | -8.615850e-47 |
| Msa1305050 | Msa1374120 | 0.815327 | 9.784837e-52 | -8.615850e-47 |
| Msa1305050 | Msa1379760 | 0.857053 | 2.120949e-62 | -8.615850e-47 |
| Msa1305050 | Msa1386600 | 0.861637 | 8.917758e-64 | -8.615850e-47 |
| Msa1305050 | Msa1394290 | 0.825000 | 5.948684e-54 | -8.615850e-47 |
| Msa1305050 | Msa1399530 | 0.809420 | 1.908851e-50 | -8.615850e-47 |
| Msa1305050 | Msa1413500 | 0.844953 | 5.491558e-59 | -8.615850e-47 |
| Msa1305050 | Msa1426370 | 0.804672 | 1.930463e-49 | -8.615850e-47 |
| Msa1305050 | Msa1426490 | 0.820903 | 5.364038e-53 | -8.615850e-47 |
| Msa1305050 | Msa1427560 | 0.817325 | 3.497276e-52 | -8.615850e-47 |
| Msa1305050 | Msa1432700 | 0.824715 | 6.946481e-54 | -8.615850e-47 |
| Msa1305050 | Msa1433310 | 0.955367 | 3.568133e-113 | -8.615850e-47 |
| Msa1305050 | Msa1448690 | 0.831373 | 1.731942e-55 | -8.615850e-47 |
| Msa1305050 | Msa1450280 | 0.843309 | 1.516609e-58 | -8.615850e-47 |
| Msa1305050 | Msa1456050 | 0.819735 | 9.934747e-53 | -8.615850e-47 |
| Msa0366890 | Msa1305050 | 0.833976 | 3.913594e-56 | -8.615850e-47 |
| Msa0369450 | Msa1305050 | 0.822063 | 2.893747e-53 | -8.615850e-47 |
| Msa0414800 | Msa1305050 | 0.846942 | 1.581752e-59 | -8.615850e-47 |
| Msa0423750 | Msa1305050 | 0.800502 | 1.398564e-48 | -8.615850e-47 |
| Msa0427150 | Msa1305050 | 0.832242 | 1.057298e-55 | -8.615850e-47 |
| Msa0440610 | Msa1305050 | 0.803779 | 2.961459e-49 | -8.615850e-47 |
| Msa0443390 | Msa1305050 | 0.858411 | 8.394527e-63 | -8.615850e-47 |
| Msa0458060 | Msa1305050 | 0.858804 | 6.407811e-63 | -8.615850e-47 |
| Msa1006840 | Msa1305050 | 0.816569 | 5.169027e-52 | -8.615850e-47 |
| Msa1013400 | Msa1305050 | 0.807643 | 4.572386e-50 | -8.615850e-47 |
| Msa1019240 | Msa1305050 | 0.873276 | 1.666890e-67 | -8.615850e-47 |
| Msa1019260 | Msa1305050 | 0.871103 | 8.814892e-67 | -8.615850e-47 |
| Msa1043690 | Msa1305050 | 0.823802 | 1.138392e-53 | -8.615850e-47 |
| Msa1072710 | Msa1305050 | 0.807173 | 5.751435e-50 | -8.615850e-47 |
| Msa1081150 | Msa1305050 | 0.803305 | 3.713731e-49 | -8.615850e-47 |
| Msa1088490 | Msa1305050 | 0.849874 | 2.443282e-60 | -8.615850e-47 |
| Msa1093530 | Msa1305050 | 0.808291 | 3.329680e-50 | -8.615850e-47 |
| Msa1104140 | Msa1305050 | 0.858378 | 8.585274e-63 | -8.615850e-47 |
| Msa1104210 | Msa1305050 | 0.875739 | 2.428972e-68 | -8.615850e-47 |
| Msa0244780 | Msa1305050 | 0.830758 | 2.451639e-55 | -8.615850e-47 |
| Msa0258850 | Msa1305050 | 0.811780 | 5.897950e-51 | -8.615850e-47 |
| Msa0262480 | Msa1305050 | 0.824473 | 7.918793e-54 | -8.615850e-47 |
| Msa0268130 | Msa1305050 | 0.814550 | 1.455427e-51 | -8.615850e-47 |
| Msa0280430 | Msa1305050 | 0.807870 | 4.092341e-50 | -8.615850e-47 |
| Msa0280610 | Msa1305050 | 0.806139 | 9.508128e-50 | -8.615850e-47 |
| Msa0289580 | Msa1305050 | 0.848884 | 4.610734e-60 | -8.615850e-47 |
| Msa0289610 | Msa1305050 | 0.859035 | 5.462285e-63 | -8.615850e-47 |
| Msa0298200 | Msa1305050 | 0.814904 | 1.214841e-51 | -8.615850e-47 |
| Msa0298990 | Msa1305050 | 0.823322 | 1.474254e-53 | -8.615850e-47 |
| Msa0300350 | Msa1305050 | 0.836850 | 7.348318e-57 | -8.615850e-47 |
| Msa0304590 | Msa1305050 | 0.818257 | 2.154633e-52 | -8.615850e-47 |
| Msa0304660 | Msa1305050 | 0.810128 | 1.344482e-50 | -8.615850e-47 |
| Msa0306690 | Msa1305050 | 0.818282 | 2.126529e-52 | -8.615850e-47 |
| Msa0313100 | Msa1305050 | 0.838573 | 2.654194e-57 | -8.615850e-47 |
| Msa0321640 | Msa1305050 | 0.844665 | 6.567324e-59 | -8.615850e-47 |
| Msa0327300 | Msa1305050 | 0.867150 | 1.691760e-65 | -8.615850e-47 |
| Msa0327330 | Msa1305050 | 0.853735 | 1.962630e-61 | -8.615850e-47 |
| Msa0331700 | Msa1305050 | 0.811075 | 8.392173e-51 | -8.615850e-47 |
| Msa0336010 | Msa1305050 | 0.817951 | 2.526869e-52 | -8.615850e-47 |
| Msa0348830 | Msa1305050 | 0.830278 | 3.213239e-55 | -8.615850e-47 |
| Msa1126510 | Msa1305050 | 0.846848 | 1.677935e-59 | -8.615850e-47 |
| Msa1126830 | Msa1305050 | 0.826716 | 2.328228e-54 | -8.615850e-47 |
| Msa1138870 | Msa1305050 | 0.817591 | 3.046255e-52 | -8.615850e-47 |
| Msa1165780 | Msa1305050 | 0.823937 | 1.058524e-53 | -8.615850e-47 |
| Msa1165940 | Msa1305050 | 0.803374 | 3.594782e-49 | -8.615850e-47 |
| Msa1166860 | Msa1305050 | 0.858109 | 1.032130e-62 | -8.615850e-47 |
| Msa1166870 | Msa1305050 | 0.862618 | 4.460087e-64 | -8.615850e-47 |
| Msa1179950 | Msa1305050 | 0.801185 | 1.014496e-48 | -8.615850e-47 |
| Msa1179980 | Msa1305050 | 0.800452 | 1.431845e-48 | -8.615850e-47 |
| Msa1183450 | Msa1305050 | 0.842633 | 2.294863e-58 | -8.615850e-47 |
| Msa1215820 | Msa1305050 | 0.843891 | 1.059942e-58 | -8.615850e-47 |
| Msa0526540 | Msa1305050 | 0.861477 | 9.979357e-64 | -8.615850e-47 |
| Msa0527150 | Msa1305050 | 0.802113 | 6.545495e-49 | -8.615850e-47 |
| Msa0531650 | Msa1305050 | 0.819321 | 1.235059e-52 | -8.615850e-47 |
| Msa0534750 | Msa1305050 | 0.845175 | 4.784329e-59 | -8.615850e-47 |
| Msa0571920 | Msa1305050 | 0.830259 | 3.247563e-55 | -8.615850e-47 |
| Msa0576940 | Msa1305050 | 0.867171 | 1.665333e-65 | -8.615850e-47 |
| Msa0581110 | Msa1305050 | 0.822942 | 1.808468e-53 | -8.615850e-47 |
| Msa0588360 | Msa1305050 | 0.826952 | 2.045322e-54 | -8.615850e-47 |
| Msa0590940 | Msa1305050 | 0.823977 | 1.035732e-53 | -8.615850e-47 |
| Msa0881290 | Msa1305050 | 0.825428 | 4.713281e-54 | -8.615850e-47 |
| Msa0902760 | Msa1305050 | 0.811753 | 5.980297e-51 | -8.615850e-47 |
| Msa0913240 | Msa1305050 | 0.800324 | 1.520033e-48 | -8.615850e-47 |
| Msa0945480 | Msa1305050 | 0.815570 | 8.639129e-52 | -8.615850e-47 |
| Msa0953310 | Msa1305050 | 0.816906 | 4.342260e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305050 | MtrunA17_Chr7g0272381 | 84.475 | 219 | 2 | 1 | 1 | 219 | 1 | 187 | 6.16e-127 | 356 |
| Msa1305050 | MtrunA17_Chr1g0192271 | 73.973 | 219 | 25 | 1 | 1 | 219 | 1 | 187 | 5.26e-111 | 315 |
| Msa1305050 | MtrunA17_Chr7g0269451 | 74.091 | 220 | 24 | 2 | 1 | 219 | 1 | 188 | 1.30e-108 | 310 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305050 | AT5G27850.1 | 69.863 | 219 | 34 | 1 | 1 | 219 | 1 | 187 | 2.54e-105 | 301 |
| Msa1305050 | AT3G05590.1 | 69.406 | 219 | 35 | 1 | 1 | 219 | 1 | 187 | 1.15e-104 | 300 |
| Msa1305050 | AT2G47570.1 | 64.220 | 218 | 45 | 2 | 3 | 219 | 1 | 186 | 1.41e-93 | 272 |
| Msa1305050 | AT3G05590.3 | 65.060 | 166 | 26 | 1 | 54 | 219 | 1 | 134 | 2.19e-71 | 214 |
| Msa1305050 | AT3G05590.2 | 65.060 | 166 | 26 | 1 | 54 | 219 | 1 | 134 | 2.19e-71 | 214 |
| Msa1305050 | AT5G27850.2 | 64.458 | 166 | 27 | 1 | 54 | 219 | 1 | 134 | 4.38e-70 | 210 |
Find 90 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGAAGAGTAGAGGATTT+AGG | 0.132509 | 8_3:-68342216 | Msa1305050:CDS |
| GAGGAAGAGTAGAGGATTTA+GGG | 0.159004 | 8_3:-68342215 | Msa1305050:CDS |
| AAAACTTAATACCCATTTAT+TGG | 0.197066 | 8_3:+68342030 | None:intergenic |
| ACTGCTTCCCTAGCATTCTT+TGG | 0.206364 | 8_3:+68342331 | None:intergenic |
| ATCAACTTTGACAGAGAAAT+TGG | 0.227766 | 8_3:+68343093 | None:intergenic |
| TAGCATTCTTTGGGCCTCTT+AGG | 0.233236 | 8_3:+68342341 | None:intergenic |
| ATTTGATGTCTGCCAATAAA+TGG | 0.237190 | 8_3:-68342042 | Msa1305050:three_prime_UTR |
| AGGTAGATATCATTGGATTT+AGG | 0.281327 | 8_3:+68344508 | None:intergenic |
| ACCATTGTAGCTCAGGGTTC+TGG | 0.304346 | 8_3:+68344684 | None:intergenic |
| GGTAAAATTGGTGTCGTTGT+GGG | 0.314974 | 8_3:-68342938 | Msa1305050:CDS |
| CTGCTTCCCTAGCATTCTTT+GGG | 0.325698 | 8_3:+68342332 | None:intergenic |
| ATCAATTACCATTGTAGCTC+AGG | 0.335636 | 8_3:+68344677 | None:intergenic |
| CTTCCCTTTGATCTTACATA+AGG | 0.356102 | 8_3:+68342262 | None:intergenic |
| AATAACGTGTTGCTTAGATT+TGG | 0.356315 | 8_3:-68341904 | Msa1305050:three_prime_UTR |
| GGGCTGTAACAGATGATATC+AGG | 0.365645 | 8_3:-68342916 | Msa1305050:CDS |
| TATATCGCTTCCTTGTTAGA+AGG | 0.375930 | 8_3:-68343179 | Msa1305050:CDS |
| GTTATGCAGGACGGTAAAAT+TGG | 0.388471 | 8_3:-68342950 | Msa1305050:intron |
| AGCCGCGAATGCGTATTTAT+AGG | 0.399254 | 8_3:+68344735 | None:intergenic |
| GGATTTAGGTTCGGTTCGTT+TGG | 0.400306 | 8_3:+68344522 | None:intergenic |
| TTACATTCGCCAACCATGAT+TGG | 0.408818 | 8_3:+68341950 | None:intergenic |
| GAGCTTGAGGTAGATATCAT+TGG | 0.411467 | 8_3:+68344501 | None:intergenic |
| CTTTGATCTTACATAAGGCT+TGG | 0.418522 | 8_3:+68342267 | None:intergenic |
| CAGGGGATCGATCTCAAAGC+TGG | 0.420599 | 8_3:-68344562 | Msa1305050:CDS |
| GATATCATTGGATTTAGGTT+CGG | 0.438911 | 8_3:+68344513 | None:intergenic |
| TCTACTCTTCCTCTTTCCTC+TGG | 0.440211 | 8_3:+68342225 | None:intergenic |
| TCTGTCCAAGGGGAGCTCTA+AGG | 0.443443 | 8_3:+68342786 | None:intergenic |
| GGGCAAGTTGATCAAATGTT+AGG | 0.445307 | 8_3:+68342807 | None:intergenic |
| CGGTAAAATTGGTGTCGTTG+TGG | 0.446137 | 8_3:-68342939 | Msa1305050:CDS |
| TTGAGATTGTTTGTTATACA+TGG | 0.458757 | 8_3:-68342082 | Msa1305050:three_prime_UTR |
| ATGTTATATTTATTGTTACA+TGG | 0.459722 | 8_3:-68342116 | Msa1305050:three_prime_UTR |
| GTGCCGTCTCTGTGAACCTA+AGG | 0.461512 | 8_3:+68342861 | None:intergenic |
| AAGCCTTATGTAAGATCAAA+GGG | 0.467688 | 8_3:-68342265 | Msa1305050:CDS |
| AAACACTTTGGTCGTGCTCC+TGG | 0.468460 | 8_3:-68342307 | Msa1305050:CDS |
| CTGTCCAAGGGGAGCTCTAA+GGG | 0.473811 | 8_3:+68342787 | None:intergenic |
| GTAAAATTGGTGTCGTTGTG+GGG | 0.476743 | 8_3:-68342937 | Msa1305050:CDS |
| CATTCTTTGGGCCTCTTAGG+AGG | 0.481833 | 8_3:+68342344 | None:intergenic |
| TAAGAGGCCCAAAGAATGCT+AGG | 0.491610 | 8_3:-68342339 | Msa1305050:CDS |
| CAAGCCTTATGTAAGATCAA+AGG | 0.498391 | 8_3:-68342266 | Msa1305050:CDS |
| CGCCTATAAATACGCATTCG+CGG | 0.505487 | 8_3:-68344737 | None:intergenic |
| TGAATTCAGGTCCTCCTAAG+AGG | 0.506122 | 8_3:-68342355 | Msa1305050:intron |
| AAGAGAAGGCCAGAGGAAAG+AGG | 0.507573 | 8_3:-68342234 | Msa1305050:CDS |
| GAATGGCTGTGTGGCACACC+AGG | 0.520029 | 8_3:+68342289 | None:intergenic |
| GAAGTATCAAAACTGTAGAA+AGG | 0.522174 | 8_3:+68342167 | None:intergenic |
| CTCATACCGTGTTCTGTCCA+AGG | 0.524348 | 8_3:+68342774 | None:intergenic |
| ATCTTACATAAGGCTTGGAA+TGG | 0.527336 | 8_3:+68342272 | None:intergenic |
| TGCCCTTAGGTTCACAGAGA+CGG | 0.538036 | 8_3:-68342864 | Msa1305050:CDS |
| CTTCCTGTGAGTAGTTGTGA+TGG | 0.544566 | 8_3:-68342513 | Msa1305050:CDS |
| TCAATTACCATTGTAGCTCA+GGG | 0.544705 | 8_3:+68344678 | None:intergenic |
| AGAGCTAATATAACAAAACT+TGG | 0.544807 | 8_3:+68342465 | None:intergenic |
| TTTGATGTCTGCCAATAAAT+GGG | 0.547480 | 8_3:-68342041 | Msa1305050:three_prime_UTR |
| AAAGTTGATCGAGTACATGA+AGG | 0.551641 | 8_3:-68343079 | Msa1305050:CDS |
| TTCCTGTGAGTAGTTGTGAT+GGG | 0.552866 | 8_3:-68342512 | Msa1305050:CDS |
| AAGTTGATCGAGTACATGAA+GGG | 0.557741 | 8_3:-68343078 | Msa1305050:CDS |
| TCCAGAACCCTGAGCTACAA+TGG | 0.565719 | 8_3:-68344685 | Msa1305050:intron |
| TTTAGTTATCTACTTAGAGA+GGG | 0.568102 | 8_3:-68342009 | Msa1305050:three_prime_UTR |
| GGACCTTGACGAGGAGCTTG+AGG | 0.569815 | 8_3:+68344488 | None:intergenic |
| AGGGGATCGATCTCAAAGCT+GGG | 0.574140 | 8_3:-68344561 | Msa1305050:CDS |
| CTTGCCCTTAGAGCTCCCCT+TGG | 0.575267 | 8_3:-68342791 | Msa1305050:CDS |
| TGCTGTCAGTCCTTCTAACA+AGG | 0.579764 | 8_3:+68343169 | None:intergenic |
| ATTGTAGCTCAGGGTTCTGG+AGG | 0.588756 | 8_3:+68344687 | None:intergenic |
| GGCTGTAACAGATGATATCA+GGG | 0.589836 | 8_3:-68342915 | Msa1305050:CDS |
| AGGGAAGCAGTAAAACACTT+TGG | 0.592083 | 8_3:-68342319 | Msa1305050:CDS |
| TCATACCGTGTTCTGTCCAA+GGG | 0.595030 | 8_3:+68342775 | None:intergenic |
| CAAGCGCTTGTTCATGAGCA+AGG | 0.595633 | 8_3:-68343127 | Msa1305050:CDS |
| AACTTTGACAGAGAAATTGG+AGG | 0.595797 | 8_3:+68343096 | None:intergenic |
| ATCCCATCACAACTACTCAC+AGG | 0.598113 | 8_3:+68342510 | None:intergenic |
| AAAGGGAAGGAAACAAGAGA+AGG | 0.607313 | 8_3:-68342248 | Msa1305050:CDS |
| CGTGCAAGAATAGAGAAGGC+GGG | 0.608166 | 8_3:-68342839 | Msa1305050:CDS |
| TTGACAGAGAAATTGGAGGT+CGG | 0.608358 | 8_3:+68343100 | None:intergenic |
| AGCTCCCCTTGGACAGAACA+CGG | 0.610780 | 8_3:-68342780 | Msa1305050:intron |
| TGCCGTCTCTGTGAACCTAA+GGG | 0.611665 | 8_3:+68342862 | None:intergenic |
| CTACCTCAAGCTCCTCGTCA+AGG | 0.612377 | 8_3:-68344491 | Msa1305050:intron |
| TAAAATTGGTGTCGTTGTGG+GGG | 0.613763 | 8_3:-68342936 | Msa1305050:CDS |
| CTTATGTAAGATCAAAGGGA+AGG | 0.618781 | 8_3:-68342261 | Msa1305050:CDS |
| GGCACGTGCAAGAATAGAGA+AGG | 0.623253 | 8_3:-68342843 | Msa1305050:CDS |
| AGGAAACAAGAGAAGGCCAG+AGG | 0.627136 | 8_3:-68342241 | Msa1305050:CDS |
| AGAGGAAAGAGGAAGAGTAG+AGG | 0.627781 | 8_3:-68342223 | Msa1305050:CDS |
| AAGAGGCCCAAAGAATGCTA+GGG | 0.636036 | 8_3:-68342338 | Msa1305050:CDS |
| GGGGATCGATCTCAAAGCTG+GGG | 0.637375 | 8_3:-68344560 | Msa1305050:CDS |
| AAATGGAATGGACCTTGACG+AGG | 0.641410 | 8_3:+68344479 | None:intergenic |
| AGTTGATCGAGTACATGAAG+GGG | 0.649783 | 8_3:-68343077 | Msa1305050:CDS |
| GATCGAGTACATGAAGGGGA+AGG | 0.663524 | 8_3:-68343073 | Msa1305050:intron |
| ACGTGCAAGAATAGAGAAGG+CGG | 0.663924 | 8_3:-68342840 | Msa1305050:CDS |
| TAGTTGTGATGGGATAGCCT+TGG | 0.678097 | 8_3:-68342502 | Msa1305050:CDS |
| TGGTAAGCTCAACATAACCA+AGG | 0.681434 | 8_3:+68342485 | None:intergenic |
| GCAAGAATAGAGAAGGCGGG+TGG | 0.710757 | 8_3:-68342836 | Msa1305050:CDS |
| CATACCGTGTTCTGTCCAAG+GGG | 0.721874 | 8_3:+68342776 | None:intergenic |
| GGGATCGATCTCAAAGCTGG+GGG | 0.738953 | 8_3:-68344559 | Msa1305050:CDS |
| GACTGACAGCAATTTCAATG+CGG | 0.745385 | 8_3:-68343157 | Msa1305050:CDS |
| TAAGGCTTGGAATGGCTGTG+TGG | 0.750805 | 8_3:+68342280 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACGATAAAATAAAAATTA+TGG | + | chr8_3:68342434-68342453 | None:intergenic | 10.0% |
| !!! | ATTTTATAAGACATAGAAAA+TGG | + | chr8_3:68342171-68342190 | None:intergenic | 15.0% |
| !! | AGAATGCAAATTATTTATAA+CGG | + | chr8_3:68343106-68343125 | None:intergenic | 15.0% |
| !! | AACTAAACAATTATAATTTC+TGG | + | chr8_3:68343617-68343636 | None:intergenic | 15.0% |
| !! | AACAAGTATATTAATTAAGT+TGG | + | chr8_3:68344256-68344275 | None:intergenic | 15.0% |
| !! | ATGTTATATTTATTGTTACA+TGG | - | chr8_3:68344514-68344533 | Msa1305050:CDS | 15.0% |
| !!! | TTAATTTGAATTTGATATGC+AGG | - | chr8_3:68342049-68342068 | Msa1305050:three_prime_UTR | 20.0% |
| !! | TAATTTGAATTTGATATGCA+GGG | - | chr8_3:68342050-68342069 | Msa1305050:three_prime_UTR | 20.0% |
| !!! | AAATTACTTTTCAATGTATC+AGG | + | chr8_3:68342597-68342616 | None:intergenic | 20.0% |
| !! | AGCTTAATTATCAACAAAAA+TGG | + | chr8_3:68342663-68342682 | None:intergenic | 20.0% |
| !! | AACTTTGACATTAACAAAAA+TGG | + | chr8_3:68343144-68343163 | None:intergenic | 20.0% |
| !! | GTCAAAGTTTATAACATATA+AGG | - | chr8_3:68343155-68343174 | Msa1305050:CDS | 20.0% |
| !! | GTTTATAACATATAAGGATT+TGG | - | chr8_3:68343161-68343180 | Msa1305050:CDS | 20.0% |
| !! | TCTTTAATATCAATATACTG+AGG | - | chr8_3:68343271-68343290 | Msa1305050:intron | 20.0% |
| !! | CTTTAATATCAATATACTGA+GGG | - | chr8_3:68343272-68343291 | Msa1305050:intron | 20.0% |
| !! | AAAAAATGTTTATGATTGTG+TGG | - | chr8_3:68343329-68343348 | Msa1305050:intron | 20.0% |
| !!! | TCATCAATTATAAGAGATTT+TGG | - | chr8_3:68343973-68343992 | Msa1305050:intron | 20.0% |
| !!! | TTAATATACTTGTTGAATTC+AGG | - | chr8_3:68344262-68344281 | Msa1305050:intron | 20.0% |
| !! | AAAACTTAATACCCATTTAT+TGG | + | chr8_3:68344603-68344622 | None:intergenic | 20.0% |
| !!! | TTTTAGAGTAGATAGAGATT+AGG | + | chr8_3:68341984-68342003 | None:intergenic | 25.0% |
| ! | AATTTGAATTTGATATGCAG+GGG | - | chr8_3:68342051-68342070 | Msa1305050:three_prime_UTR | 25.0% |
| ! | ATAAGACATAGAAAATGGAA+TGG | + | chr8_3:68342166-68342185 | None:intergenic | 25.0% |
| ! | TTATGTGATTATTGTGATCA+AGG | - | chr8_3:68342220-68342239 | Msa1305050:CDS | 25.0% |
| ! | TTAAAATAAAATACACTGCG+AGG | + | chr8_3:68342362-68342381 | None:intergenic | 25.0% |
| ! | ATTCTATCTCCATATGAAAA+TGG | + | chr8_3:68342551-68342570 | None:intergenic | 25.0% |
| ! | AATTATAATGCGAATACATG+TGG | - | chr8_3:68342691-68342710 | Msa1305050:intron | 25.0% |
| !! | ACTATGATCTAATTTTCTCA+TGG | - | chr8_3:68343648-68343667 | Msa1305050:intron | 25.0% |
| !! | CTATGATCTAATTTTCTCAT+GGG | - | chr8_3:68343649-68343668 | Msa1305050:intron | 25.0% |
| !!! | TGCTCTAAAAACACAAATAT+TGG | + | chr8_3:68343888-68343907 | None:intergenic | 25.0% |
| !!! | ATTTGGTGTCTATTTTAGAT+TGG | - | chr8_3:68344001-68344020 | Msa1305050:intron | 25.0% |
| !! | TGGTTTGAATGGTATATTTT+TGG | - | chr8_3:68344029-68344048 | Msa1305050:intron | 25.0% |
| ! | AGAGCTAATATAACAAAACT+TGG | + | chr8_3:68344168-68344187 | None:intergenic | 25.0% |
| !!! | TTGAGATTGTTTGTTATACA+TGG | - | chr8_3:68344548-68344567 | Msa1305050:CDS | 25.0% |
| !!! | TTTTAGTTATCTACTTAGAG+AGG | - | chr8_3:68344620-68344639 | Msa1305050:intron | 25.0% |
| ! | TTTAGTTATCTACTTAGAGA+GGG | - | chr8_3:68344621-68344640 | Msa1305050:intron | 25.0% |
| !! | GTCTTCTCTGTATTTAGTTT+TGG | - | chr8_3:68342020-68342039 | Msa1305050:three_prime_UTR | 30.0% |
| ! | GATATCATTGGATTTAGGTT+CGG | + | chr8_3:68342120-68342139 | None:intergenic | 30.0% |
| AGGTAGATATCATTGGATTT+AGG | + | chr8_3:68342125-68342144 | None:intergenic | 30.0% | |
| TTGGAACTAATTGTATTCCT+TGG | + | chr8_3:68342323-68342342 | None:intergenic | 30.0% | |
| AATTATAGTCCTAGACCTTA+CGG | + | chr8_3:68342495-68342514 | None:intergenic | 30.0% | |
| ! | ACTTTTCAATGTATCAGGAA+TGG | + | chr8_3:68342592-68342611 | None:intergenic | 30.0% |
| ATAGCTTAAAACACACACTA+AGG | + | chr8_3:68342740-68342759 | None:intergenic | 30.0% | |
| ! | AATTTTATTCCTGGACCTTA+TGG | + | chr8_3:68342801-68342820 | None:intergenic | 30.0% |
| ! | GTTGGAACTAATTTTATTCC+TGG | + | chr8_3:68342810-68342829 | None:intergenic | 30.0% |
| ATGCATATACTTAGTCCTAA+TGG | + | chr8_3:68342871-68342890 | None:intergenic | 30.0% | |
| ! | AAATGTGTTTTCGATCAACT+TGG | + | chr8_3:68342940-68342959 | None:intergenic | 30.0% |
| GTTGGAACTAATTATATTCC+TGG | + | chr8_3:68343019-68343038 | None:intergenic | 30.0% | |
| GTACAATTGATTATATCCAG+AGG | + | chr8_3:68343057-68343076 | None:intergenic | 30.0% | |
| !! | TAGGTGTTTGTTGTTGATAT+AGG | - | chr8_3:68343192-68343211 | Msa1305050:intron | 30.0% |
| TGGTTAAAAGTAACATCACT+GGG | + | chr8_3:68343228-68343247 | None:intergenic | 30.0% | |
| ATGGTTAAAAGTAACATCAC+TGG | + | chr8_3:68343229-68343248 | None:intergenic | 30.0% | |
| ATCAACTTTGACAGAGAAAT+TGG | + | chr8_3:68343540-68343559 | None:intergenic | 30.0% | |
| TATTAAAAATTGCTGCCCTT+AGG | - | chr8_3:68343753-68343772 | Msa1305050:intron | 30.0% | |
| !!! | AAGAGATTTTGGTGTCTATT+TGG | - | chr8_3:68343984-68344003 | Msa1305050:intron | 30.0% |
| !! | TCTATTTTAGATTGGAGACT+TGG | - | chr8_3:68344009-68344028 | Msa1305050:intron | 30.0% |
| ! | AAGCCTTATGTAAGATCAAA+GGG | - | chr8_3:68344365-68344384 | Msa1305050:intron | 30.0% |
| ! | GAAGTATCAAAACTGTAGAA+AGG | + | chr8_3:68344466-68344485 | None:intergenic | 30.0% |
| ATTTGATGTCTGCCAATAAA+TGG | - | chr8_3:68344588-68344607 | Msa1305050:intron | 30.0% | |
| TTTGATGTCTGCCAATAAAT+GGG | - | chr8_3:68344589-68344608 | Msa1305050:intron | 30.0% | |
| ! | CATTACTCTTTTACCAATCA+TGG | - | chr8_3:68344667-68344686 | Msa1305050:intron | 30.0% |
| !! | AATAACGTGTTGCTTAGATT+TGG | - | chr8_3:68344726-68344745 | Msa1305050:five_prime_UTR | 30.0% |
| TCAATTACCATTGTAGCTCA+GGG | + | chr8_3:68341955-68341974 | None:intergenic | 35.0% | |
| ATCAATTACCATTGTAGCTC+AGG | + | chr8_3:68341956-68341975 | None:intergenic | 35.0% | |
| !! | AATTGTATTCCTTGGCCTTA+CGG | + | chr8_3:68342315-68342334 | None:intergenic | 35.0% |
| ATACTTAGTCCTAATGGTGA+TGG | + | chr8_3:68342865-68342884 | None:intergenic | 35.0% | |
| AATTATATTCCTGGACCTTC+CGG | + | chr8_3:68343010-68343029 | None:intergenic | 35.0% | |
| ! | TAAGGATTTGGCTTCATGAT+AGG | - | chr8_3:68343173-68343192 | Msa1305050:CDS | 35.0% |
| TGTTGTTGATATAGGACTTG+AGG | - | chr8_3:68343200-68343219 | Msa1305050:intron | 35.0% | |
| TCATGTAATCAGCATTAGCA+TGG | + | chr8_3:68343248-68343267 | None:intergenic | 35.0% | |
| TGCAACACATGGAATTAGAA+TGG | + | chr8_3:68343423-68343442 | None:intergenic | 35.0% | |
| TATATCGCTTCCTTGTTAGA+AGG | - | chr8_3:68343451-68343470 | Msa1305050:intron | 35.0% | |
| AACTTTGACAGAGAAATTGG+AGG | + | chr8_3:68343537-68343556 | None:intergenic | 35.0% | |
| ! | AAAGTTGATCGAGTACATGA+AGG | - | chr8_3:68343551-68343570 | Msa1305050:intron | 35.0% |
| ! | AAGTTGATCGAGTACATGAA+GGG | - | chr8_3:68343552-68343571 | Msa1305050:intron | 35.0% |
| ATGGGATTATTGTGTTATGC+AGG | - | chr8_3:68343667-68343686 | Msa1305050:intron | 35.0% | |
| GATTATTGTGTTATGCAGGA+CGG | - | chr8_3:68343671-68343690 | Msa1305050:intron | 35.0% | |
| ! | GGGCAGCAATTTTTAATACT+GGG | + | chr8_3:68343751-68343770 | None:intergenic | 35.0% |
| ! | AGGGCAGCAATTTTTAATAC+TGG | + | chr8_3:68343752-68343771 | None:intergenic | 35.0% |
| TAATGACGCAATGGATAGTA+AGG | + | chr8_3:68343923-68343942 | None:intergenic | 35.0% | |
| ATCCATTGCGTCATTATGAT+TGG | - | chr8_3:68343927-68343946 | Msa1305050:intron | 35.0% | |
| TCCATTGCGTCATTATGATT+GGG | - | chr8_3:68343928-68343947 | Msa1305050:intron | 35.0% | |
| TTGGCTTCATAAAAGCTTGT+TGG | + | chr8_3:68344237-68344256 | None:intergenic | 35.0% | |
| ATCTTACATAAGGCTTGGAA+TGG | + | chr8_3:68344361-68344380 | None:intergenic | 35.0% | |
| CTTTGATCTTACATAAGGCT+TGG | + | chr8_3:68344366-68344385 | None:intergenic | 35.0% | |
| ! | CAAGCCTTATGTAAGATCAA+AGG | - | chr8_3:68344364-68344383 | Msa1305050:intron | 35.0% |
| CTTCCCTTTGATCTTACATA+AGG | + | chr8_3:68344371-68344390 | None:intergenic | 35.0% | |
| CTTATGTAAGATCAAAGGGA+AGG | - | chr8_3:68344369-68344388 | Msa1305050:intron | 35.0% | |
| ! | ACTCTTTTACCAATCATGGT+TGG | - | chr8_3:68344671-68344690 | Msa1305050:intron | 35.0% |
| GAGCTTGAGGTAGATATCAT+TGG | + | chr8_3:68342132-68342151 | None:intergenic | 40.0% | |
| !! | CCATATGAAAATGGACTGAG+AGG | + | chr8_3:68342542-68342561 | None:intergenic | 40.0% |
| ! | CCTCTCAGTCCATTTTCATA+TGG | - | chr8_3:68342539-68342558 | Msa1305050:intron | 40.0% |
| ATAGAATAGCTTCTTCAGCC+AGG | - | chr8_3:68342564-68342583 | Msa1305050:intron | 40.0% | |
| AATGTATCAGGAATGGTTCC+TGG | + | chr8_3:68342585-68342604 | None:intergenic | 40.0% | |
| ATAGCTGATTGTGCAACACA+TGG | + | chr8_3:68343434-68343453 | None:intergenic | 40.0% | |
| GACTGACAGCAATTTCAATG+CGG | - | chr8_3:68343473-68343492 | Msa1305050:intron | 40.0% | |
| TTGACAGAGAAATTGGAGGT+CGG | + | chr8_3:68343533-68343552 | None:intergenic | 40.0% | |
| AGTTGATCGAGTACATGAAG+GGG | - | chr8_3:68343553-68343572 | Msa1305050:intron | 40.0% | |
| GTTATGCAGGACGGTAAAAT+TGG | - | chr8_3:68343680-68343699 | Msa1305050:intron | 40.0% | |
| !! | GGTAAAATTGGTGTCGTTGT+GGG | - | chr8_3:68343692-68343711 | Msa1305050:intron | 40.0% |
| !! | GTAAAATTGGTGTCGTTGTG+GGG | - | chr8_3:68343693-68343712 | Msa1305050:intron | 40.0% |
| !! | TAAAATTGGTGTCGTTGTGG+GGG | - | chr8_3:68343694-68343713 | Msa1305050:intron | 40.0% |
| GGCTGTAACAGATGATATCA+GGG | - | chr8_3:68343715-68343734 | Msa1305050:intron | 40.0% | |
| !! | GGGCAAGTTGATCAAATGTT+AGG | + | chr8_3:68343826-68343845 | None:intergenic | 40.0% |
| TCCCAATCATAATGACGCAA+TGG | + | chr8_3:68343932-68343951 | None:intergenic | 40.0% | |
| ! | GATTGGAGACTTGGTTTGAA+TGG | - | chr8_3:68344018-68344037 | Msa1305050:intron | 40.0% |
| TTCCTGTGAGTAGTTGTGAT+GGG | - | chr8_3:68344118-68344137 | Msa1305050:intron | 40.0% | |
| TGGTAAGCTCAACATAACCA+AGG | + | chr8_3:68344148-68344167 | None:intergenic | 40.0% | |
| TTCCTGTGAGTAGTTGTGAT+GGG | - | chr8_3:68344118-68344137 | Msa1305050:intron | 40.0% | |
| TGGTAAGCTCAACATAACCA+AGG | + | chr8_3:68344148-68344167 | None:intergenic | 40.0% | |
| AGGGAAGCAGTAAAACACTT+TGG | - | chr8_3:68344311-68344330 | Msa1305050:intron | 40.0% | |
| AAAGGGAAGGAAACAAGAGA+AGG | - | chr8_3:68344382-68344401 | Msa1305050:intron | 40.0% | |
| AGAGGAAGAGTAGAGGATTT+AGG | - | chr8_3:68344414-68344433 | Msa1305050:intron | 40.0% | |
| GAGGAAGAGTAGAGGATTTA+GGG | - | chr8_3:68344415-68344434 | Msa1305050:intron | 40.0% | |
| TTACATTCGCCAACCATGAT+TGG | + | chr8_3:68344683-68344702 | None:intergenic | 40.0% | |
| ! | GGATTTAGGTTCGGTTCGTT+TGG | + | chr8_3:68342111-68342130 | None:intergenic | 45.0% |
| AAATGGAATGGACCTTGACG+AGG | + | chr8_3:68342154-68342173 | None:intergenic | 45.0% | |
| AATGTGATCCCAGCTCTATG+AGG | - | chr8_3:68342289-68342308 | Msa1305050:CDS | 45.0% | |
| AGGCTCAGACAAATGTGTGT+TGG | + | chr8_3:68342342-68342361 | None:intergenic | 45.0% | |
| AATGTGATCCCAGCTCTATG+AGG | - | chr8_3:68342289-68342308 | Msa1305050:CDS | 45.0% | |
| AGGCTCAGACAAATGTGTGT+TGG | + | chr8_3:68342342-68342361 | None:intergenic | 45.0% | |
| CCTTATGGTCTCATAGAGCT+GGG | + | chr8_3:68342786-68342805 | None:intergenic | 45.0% | |
| ACCTTATGGTCTCATAGAGC+TGG | + | chr8_3:68342787-68342806 | None:intergenic | 45.0% | |
| TCTATGAGACCATAAGGTCC+AGG | - | chr8_3:68342789-68342808 | Msa1305050:CDS | 45.0% | |
| TCTCTCACACCATCACCATT+AGG | - | chr8_3:68342853-68342872 | Msa1305050:CDS | 45.0% | |
| AGGCTCAGACAAATGTGTGT+TGG | + | chr8_3:68342342-68342361 | None:intergenic | 45.0% | |
| TGCTGTCAGTCCTTCTAACA+AGG | + | chr8_3:68343464-68343483 | None:intergenic | 45.0% | |
| !! | CGGTAAAATTGGTGTCGTTG+TGG | - | chr8_3:68343691-68343710 | Msa1305050:intron | 45.0% |
| GGGCTGTAACAGATGATATC+AGG | - | chr8_3:68343714-68343733 | Msa1305050:intron | 45.0% | |
| ACGTGCAAGAATAGAGAAGG+CGG | - | chr8_3:68343790-68343809 | Msa1305050:intron | 45.0% | |
| TCATACCGTGTTCTGTCCAA+GGG | + | chr8_3:68343858-68343877 | None:intergenic | 45.0% | |
| CTTCCTGTGAGTAGTTGTGA+TGG | - | chr8_3:68344117-68344136 | Msa1305050:intron | 45.0% | |
| ATCCCATCACAACTACTCAC+AGG | + | chr8_3:68344123-68344142 | None:intergenic | 45.0% | |
| ! | TAGTTGTGATGGGATAGCCT+TGG | - | chr8_3:68344128-68344147 | Msa1305050:intron | 45.0% |
| CTTCCTGTGAGTAGTTGTGA+TGG | - | chr8_3:68344117-68344136 | Msa1305050:intron | 45.0% | |
| ATCCCATCACAACTACTCAC+AGG | + | chr8_3:68344123-68344142 | None:intergenic | 45.0% | |
| ! | TAGTTGTGATGGGATAGCCT+TGG | - | chr8_3:68344128-68344147 | Msa1305050:intron | 45.0% |
| TGAATTCAGGTCCTCCTAAG+AGG | - | chr8_3:68344275-68344294 | Msa1305050:intron | 45.0% | |
| TAGCATTCTTTGGGCCTCTT+AGG | + | chr8_3:68344292-68344311 | None:intergenic | 45.0% | |
| TAAGAGGCCCAAAGAATGCT+AGG | - | chr8_3:68344291-68344310 | Msa1305050:intron | 45.0% | |
| AAGAGGCCCAAAGAATGCTA+GGG | - | chr8_3:68344292-68344311 | Msa1305050:intron | 45.0% | |
| CTGCTTCCCTAGCATTCTTT+GGG | + | chr8_3:68344301-68344320 | None:intergenic | 45.0% | |
| ACTGCTTCCCTAGCATTCTT+TGG | + | chr8_3:68344302-68344321 | None:intergenic | 45.0% | |
| TCTACTCTTCCTCTTTCCTC+TGG | + | chr8_3:68344408-68344427 | None:intergenic | 45.0% | |
| AGAGGAAAGAGGAAGAGTAG+AGG | - | chr8_3:68344407-68344426 | Msa1305050:intron | 45.0% | |
| !! | TAAATAAATAAATACAAAAA+CGG | + | chr8_3:68342199-68342218 | None:intergenic | 5.0% |
| ! | ATTGTAGCTCAGGGTTCTGG+AGG | + | chr8_3:68341946-68341965 | None:intergenic | 50.0% |
| TCCAGAACCCTGAGCTACAA+TGG | - | chr8_3:68341945-68341964 | Msa1305050:three_prime_UTR | 50.0% | |
| ACCATTGTAGCTCAGGGTTC+TGG | + | chr8_3:68341949-68341968 | None:intergenic | 50.0% | |
| AGGGGATCGATCTCAAAGCT+GGG | - | chr8_3:68342069-68342088 | Msa1305050:three_prime_UTR | 50.0% | |
| TCTATGAGGCCGTAAGGTCT+AGG | - | chr8_3:68342483-68342502 | Msa1305050:CDS | 50.0% | |
| CCCAGCTCTATGAGACCATA+AGG | - | chr8_3:68342783-68342802 | Msa1305050:CDS | 50.0% | |
| AGGCTCAGACAAGTGTGTGT+TGG | + | chr8_3:68342828-68342847 | None:intergenic | 50.0% | |
| ! | TGATGGTGTGAGAGATGCAG+AGG | + | chr8_3:68342848-68342867 | None:intergenic | 50.0% |
| TGATCCCAGCTCTATGAGAC+CGG | - | chr8_3:68342779-68342798 | Msa1305050:intron | 50.0% | |
| CACACATTTGTCTGAGCCTC+TGG | - | chr8_3:68342343-68342362 | Msa1305050:CDS | 50.0% | |
| CAAGCGCTTGTTCATGAGCA+AGG | - | chr8_3:68343503-68343522 | Msa1305050:intron | 50.0% | |
| GATCGAGTACATGAAGGGGA+AGG | - | chr8_3:68343557-68343576 | Msa1305050:intron | 50.0% | |
| TGCCCTTAGGTTCACAGAGA+CGG | - | chr8_3:68343766-68343785 | Msa1305050:intron | 50.0% | |
| TGCCGTCTCTGTGAACCTAA+GGG | + | chr8_3:68343771-68343790 | None:intergenic | 50.0% | |
| GGCACGTGCAAGAATAGAGA+AGG | - | chr8_3:68343787-68343806 | Msa1305050:intron | 50.0% | |
| CGTGCAAGAATAGAGAAGGC+GGG | - | chr8_3:68343791-68343810 | Msa1305050:intron | 50.0% | |
| CATACCGTGTTCTGTCCAAG+GGG | + | chr8_3:68343857-68343876 | None:intergenic | 50.0% | |
| CTCATACCGTGTTCTGTCCA+AGG | + | chr8_3:68343859-68343878 | None:intergenic | 50.0% | |
| CATTCTTTGGGCCTCTTAGG+AGG | + | chr8_3:68344289-68344308 | None:intergenic | 50.0% | |
| AAACACTTTGGTCGTGCTCC+TGG | - | chr8_3:68344323-68344342 | Msa1305050:intron | 50.0% | |
| TAAGGCTTGGAATGGCTGTG+TGG | + | chr8_3:68344353-68344372 | None:intergenic | 50.0% | |
| AGGAAACAAGAGAAGGCCAG+AGG | - | chr8_3:68344389-68344408 | Msa1305050:intron | 50.0% | |
| AAGAGAAGGCCAGAGGAAAG+AGG | - | chr8_3:68344396-68344415 | Msa1305050:intron | 50.0% | |
| CAGGGGATCGATCTCAAAGC+TGG | - | chr8_3:68342068-68342087 | Msa1305050:three_prime_UTR | 55.0% | |
| GGGGATCGATCTCAAAGCTG+GGG | - | chr8_3:68342070-68342089 | Msa1305050:three_prime_UTR | 55.0% | |
| GGGATCGATCTCAAAGCTGG+GGG | - | chr8_3:68342071-68342090 | Msa1305050:three_prime_UTR | 55.0% | |
| CTACCTCAAGCTCCTCGTCA+AGG | - | chr8_3:68342139-68342158 | Msa1305050:three_prime_UTR | 55.0% | |
| CCTTACGGCCTCATAGAGCT+GGG | + | chr8_3:68342300-68342319 | None:intergenic | 55.0% | |
| TCTATGAGGCCGTAAGGCCA+AGG | - | chr8_3:68342303-68342322 | Msa1305050:CDS | 55.0% | |
| CCTTACGGCCTCATAGAGCT+GGG | + | chr8_3:68342300-68342319 | None:intergenic | 55.0% | |
| ACCTTACGGCCTCATAGAGC+TGG | + | chr8_3:68342481-68342500 | None:intergenic | 55.0% | |
| CCTTCCGGTCTCATAGAGCT+GGG | + | chr8_3:68342995-68343014 | None:intergenic | 55.0% | |
| ACCTTCCGGTCTCATAGAGC+TGG | + | chr8_3:68342996-68343015 | None:intergenic | 55.0% | |
| TCTATGAGACCGGAAGGTCC+AGG | - | chr8_3:68342998-68343017 | Msa1305050:intron | 55.0% | |
| GTGCCGTCTCTGTGAACCTA+AGG | + | chr8_3:68343772-68343791 | None:intergenic | 55.0% | |
| GCAAGAATAGAGAAGGCGGG+TGG | - | chr8_3:68343794-68343813 | Msa1305050:intron | 55.0% | |
| ! | CTGTCCAAGGGGAGCTCTAA+GGG | + | chr8_3:68343846-68343865 | None:intergenic | 55.0% |
| TCTGTCCAAGGGGAGCTCTA+AGG | + | chr8_3:68343847-68343866 | None:intergenic | 55.0% | |
| AGCTCCCCTTGGACAGAACA+CGG | - | chr8_3:68343850-68343869 | Msa1305050:intron | 55.0% | |
| GGACCTTGACGAGGAGCTTG+AGG | + | chr8_3:68342145-68342164 | None:intergenic | 60.0% | |
| CCCAGCTCTATGAGGCCGTA+AGG | - | chr8_3:68342297-68342316 | Msa1305050:CDS | 60.0% | |
| GCCTTACGGCCTCATAGAGC+TGG | + | chr8_3:68342301-68342320 | None:intergenic | 60.0% | |
| CCCAGCTCTATGAGGCCGTA+AGG | - | chr8_3:68342297-68342316 | Msa1305050:CDS | 60.0% | |
| CCCAGCTCTATGAGACCGGA+AGG | - | chr8_3:68342992-68343011 | Msa1305050:intron | 60.0% | |
| CTTGCCCTTAGAGCTCCCCT+TGG | - | chr8_3:68343839-68343858 | Msa1305050:intron | 60.0% | |
| GAATGGCTGTGTGGCACACC+AGG | + | chr8_3:68344344-68344363 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 68341897 | 68344755 | 68341897 | ID=Msa1305050;Name=Msa1305050 |
| chr8_3 | mRNA | 68341897 | 68344755 | 68341897 | ID=Msa1305050-mRNA-1;Parent=Msa1305050;Name=Msa1305050-mRNA-1;_AED=0.29;_eAED=0.29;_QI=67|0.6|0.83|0.83|0.8|0.83|6|313|219 |
| chr8_3 | exon | 68341897 | 68342368 | 68341897 | ID=Msa1305050-mRNA-1:exon:21172;Parent=Msa1305050-mRNA-1 |
| chr8_3 | exon | 68342461 | 68342556 | 68342461 | ID=Msa1305050-mRNA-1:exon:21171;Parent=Msa1305050-mRNA-1 |
| chr8_3 | exon | 68342781 | 68342963 | 68342781 | ID=Msa1305050-mRNA-1:exon:21170;Parent=Msa1305050-mRNA-1 |
| chr8_3 | exon | 68343074 | 68343202 | 68343074 | ID=Msa1305050-mRNA-1:exon:21169;Parent=Msa1305050-mRNA-1 |
| chr8_3 | exon | 68344492 | 68344581 | 68344492 | ID=Msa1305050-mRNA-1:exon:21168;Parent=Msa1305050-mRNA-1 |
| chr8_3 | exon | 68344686 | 68344755 | 68344686 | ID=Msa1305050-mRNA-1:exon:21167;Parent=Msa1305050-mRNA-1 |
| chr8_3 | five_prime_UTR | 68344689 | 68344755 | 68344689 | ID=Msa1305050-mRNA-1:five_prime_utr;Parent=Msa1305050-mRNA-1 |
| chr8_3 | CDS | 68344686 | 68344688 | 68344686 | ID=Msa1305050-mRNA-1:cds;Parent=Msa1305050-mRNA-1 |
| chr8_3 | CDS | 68344492 | 68344581 | 68344492 | ID=Msa1305050-mRNA-1:cds;Parent=Msa1305050-mRNA-1 |
| chr8_3 | CDS | 68343074 | 68343202 | 68343074 | ID=Msa1305050-mRNA-1:cds;Parent=Msa1305050-mRNA-1 |
| chr8_3 | CDS | 68342781 | 68342963 | 68342781 | ID=Msa1305050-mRNA-1:cds;Parent=Msa1305050-mRNA-1 |
| chr8_3 | CDS | 68342461 | 68342556 | 68342461 | ID=Msa1305050-mRNA-1:cds;Parent=Msa1305050-mRNA-1 |
| chr8_3 | CDS | 68342210 | 68342368 | 68342210 | ID=Msa1305050-mRNA-1:cds;Parent=Msa1305050-mRNA-1 |
| chr8_3 | three_prime_UTR | 68341897 | 68342209 | 68341897 | ID=Msa1305050-mRNA-1:three_prime_utr;Parent=Msa1305050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
