Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433310 | NP_001365649.1 | 84.475 | 219 | 2 | 1 | 1 | 219 | 1 | 187 | 6.70e-123 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433310 | sp|O65729|RL18_CICAR | 73.611 | 216 | 24 | 1 | 4 | 219 | 1 | 183 | 1.21e-106 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433310 | B7FMF5 | 84.475 | 219 | 2 | 1 | 1 | 219 | 1 | 187 | 3.20e-123 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa1433310 | 0.858063 | 1.065259e-62 | -8.615850e-47 |
| Msa0002790 | Msa1433310 | 0.860844 | 1.555851e-63 | -8.615850e-47 |
| Msa0003780 | Msa1433310 | 0.838393 | 2.953967e-57 | -8.615850e-47 |
| Msa0006910 | Msa1433310 | 0.828948 | 6.767523e-55 | -8.615850e-47 |
| Msa0022970 | Msa1433310 | 0.818357 | 2.044372e-52 | -8.615850e-47 |
| Msa0027260 | Msa1433310 | 0.860395 | 2.127621e-63 | -8.615850e-47 |
| Msa0032260 | Msa1433310 | 0.816659 | 4.934563e-52 | -8.615850e-47 |
| Msa0040690 | Msa1433310 | 0.830981 | 2.162083e-55 | -8.615850e-47 |
| Msa0042280 | Msa1433310 | 0.877014 | 8.823053e-69 | -8.615850e-47 |
| Msa0043660 | Msa1433310 | 0.804564 | 2.032918e-49 | -8.615850e-47 |
| Msa0045730 | Msa1433310 | 0.815762 | 7.831037e-52 | -8.615850e-47 |
| Msa0047160 | Msa1433310 | 0.850077 | 2.143178e-60 | -8.615850e-47 |
| Msa0048180 | Msa1433310 | 0.835738 | 1.409034e-56 | -8.615850e-47 |
| Msa0049370 | Msa1433310 | 0.826590 | 2.495044e-54 | -8.615850e-47 |
| Msa0052610 | Msa1433310 | 0.825189 | 5.369508e-54 | -8.615850e-47 |
| Msa0056470 | Msa1433310 | 0.834303 | 3.239805e-56 | -8.615850e-47 |
| Msa0074030 | Msa1433310 | 0.818405 | 1.993969e-52 | -8.615850e-47 |
| Msa0074320 | Msa1433310 | 0.837915 | 3.922299e-57 | -8.615850e-47 |
| Msa0076040 | Msa1433310 | 0.822404 | 2.412593e-53 | -8.615850e-47 |
| Msa0082280 | Msa1433310 | 0.841851 | 3.697202e-58 | -8.615850e-47 |
| Msa0086750 | Msa1433310 | 0.821830 | 3.277821e-53 | -8.615850e-47 |
| Msa0091880 | Msa1433310 | 0.826021 | 3.409922e-54 | -8.615850e-47 |
| Msa0094470 | Msa1433310 | 0.859622 | 3.640262e-63 | -8.615850e-47 |
| Msa0097580 | Msa1433310 | 0.804025 | 2.633463e-49 | -8.615850e-47 |
| Msa0097600 | Msa1433310 | 0.842080 | 3.215801e-58 | -8.615850e-47 |
| Msa0100740 | Msa1433310 | 0.814632 | 1.395721e-51 | -8.615850e-47 |
| Msa0116130 | Msa1433310 | 0.822874 | 1.875674e-53 | -8.615850e-47 |
| Msa0116670 | Msa1433310 | 0.828539 | 8.500143e-55 | -8.615850e-47 |
| Msa0118710 | Msa1433310 | 0.839510 | 1.517812e-57 | -8.615850e-47 |
| Msa1349570 | Msa1433310 | 0.855521 | 5.965311e-62 | -8.615850e-47 |
| Msa1356440 | Msa1433310 | 0.805969 | 1.032704e-49 | -8.615850e-47 |
| Msa1356790 | Msa1433310 | 0.806419 | 8.302274e-50 | -8.615850e-47 |
| Msa1362790 | Msa1433310 | 0.807594 | 4.683578e-50 | -8.615850e-47 |
| Msa1363330 | Msa1433310 | 0.877596 | 5.536178e-69 | -8.615850e-47 |
| Msa1363860 | Msa1433310 | 0.808501 | 3.002914e-50 | -8.615850e-47 |
| Msa1366180 | Msa1433310 | 0.844688 | 6.476693e-59 | -8.615850e-47 |
| Msa1369190 | Msa1433310 | 0.833599 | 4.860940e-56 | -8.615850e-47 |
| Msa1370860 | Msa1433310 | 0.841579 | 4.361640e-58 | -8.615850e-47 |
| Msa1374120 | Msa1433310 | 0.839835 | 1.249356e-57 | -8.615850e-47 |
| Msa1379760 | Msa1433310 | 0.866959 | 1.947249e-65 | -8.615850e-47 |
| Msa1382620 | Msa1433310 | 0.802743 | 4.854594e-49 | -8.615850e-47 |
| Msa1386600 | Msa1433310 | 0.877619 | 5.436296e-69 | -8.615850e-47 |
| Msa1394290 | Msa1433310 | 0.841400 | 4.862665e-58 | -8.615850e-47 |
| Msa1399530 | Msa1433310 | 0.817014 | 4.108432e-52 | -8.615850e-47 |
| Msa1413500 | Msa1433310 | 0.847072 | 1.457505e-59 | -8.615850e-47 |
| Msa1426490 | Msa1433310 | 0.824063 | 9.888987e-54 | -8.615850e-47 |
| Msa1427560 | Msa1433310 | 0.825579 | 4.340347e-54 | -8.615850e-47 |
| Msa1432700 | Msa1433310 | 0.846647 | 1.904611e-59 | -8.615850e-47 |
| Msa1433310 | Msa1442850 | 0.818712 | 1.698687e-52 | -8.615850e-47 |
| Msa1433310 | Msa1448690 | 0.855606 | 5.637658e-62 | -8.615850e-47 |
| Msa1433310 | Msa1450280 | 0.874351 | 7.227639e-68 | -8.615850e-47 |
| Msa1433310 | Msa1456050 | 0.843118 | 1.705227e-58 | -8.615850e-47 |
| Msa0602920 | Msa1433310 | 0.808880 | 2.491942e-50 | -8.615850e-47 |
| Msa0603320 | Msa1433310 | 0.843341 | 1.486852e-58 | -8.615850e-47 |
| Msa0608320 | Msa1433310 | 0.818197 | 2.222131e-52 | -8.615850e-47 |
| Msa0615440 | Msa1433310 | 0.828991 | 6.607816e-55 | -8.615850e-47 |
| Msa0615580 | Msa1433310 | 0.816335 | 5.832441e-52 | -8.615850e-47 |
| Msa0620990 | Msa1433310 | 0.800671 | 1.292030e-48 | -8.615850e-47 |
| Msa0621950 | Msa1433310 | 0.917201 | 7.084611e-86 | -8.615850e-47 |
| Msa0622750 | Msa1433310 | 0.802993 | 4.309055e-49 | -8.615850e-47 |
| Msa0623200 | Msa1433310 | 0.827427 | 1.574245e-54 | -8.615850e-47 |
| Msa0661300 | Msa1433310 | 0.855046 | 8.205513e-62 | -8.615850e-47 |
| Msa0666230 | Msa1433310 | 0.828657 | 7.958301e-55 | -8.615850e-47 |
| Msa0669520 | Msa1433310 | 0.821782 | 3.362480e-53 | -8.615850e-47 |
| Msa0677290 | Msa1433310 | 0.819235 | 1.291802e-52 | -8.615850e-47 |
| Msa0687630 | Msa1433310 | 0.811056 | 8.471659e-51 | -8.615850e-47 |
| Msa0688850 | Msa1433310 | 0.822516 | 2.271578e-53 | -8.615850e-47 |
| Msa0692940 | Msa1433310 | 0.816638 | 4.987553e-52 | -8.615850e-47 |
| Msa0698490 | Msa1433310 | 0.827167 | 1.816509e-54 | -8.615850e-47 |
| Msa0698660 | Msa1433310 | 0.831010 | 2.126977e-55 | -8.615850e-47 |
| Msa0698780 | Msa1433310 | 0.816049 | 6.756940e-52 | -8.615850e-47 |
| Msa0705000 | Msa1433310 | 0.803636 | 3.172209e-49 | -8.615850e-47 |
| Msa0705040 | Msa1433310 | 0.813225 | 2.850655e-51 | -8.615850e-47 |
| Msa0709780 | Msa1433310 | 0.809031 | 2.313093e-50 | -8.615850e-47 |
| Msa0712610 | Msa1433310 | 0.807471 | 4.974765e-50 | -8.615850e-47 |
| Msa0719420 | Msa1433310 | 0.800559 | 1.361448e-48 | -8.615850e-47 |
| Msa0729200 | Msa1433310 | 0.818357 | 2.044372e-52 | -8.615850e-47 |
| Msa0738100 | Msa1433310 | 0.850014 | 2.232878e-60 | -8.615850e-47 |
| Msa0749760 | Msa1433310 | 0.803119 | 4.058246e-49 | -8.615850e-47 |
| Msa0769590 | Msa1433310 | 0.827883 | 1.223430e-54 | -8.615850e-47 |
| Msa0780490 | Msa1433310 | 0.805437 | 1.335800e-49 | -8.615850e-47 |
| Msa0785130 | Msa1433310 | 0.857388 | 1.688850e-62 | -8.615850e-47 |
| Msa0789680 | Msa1433310 | 0.800330 | 1.515998e-48 | -8.615850e-47 |
| Msa0792760 | Msa1433310 | 0.823288 | 1.501428e-53 | -8.615850e-47 |
| Msa0806880 | Msa1433310 | 0.842283 | 2.841941e-58 | -8.615850e-47 |
| Msa0817540 | Msa1433310 | 0.865297 | 6.539145e-65 | -8.615850e-47 |
| Msa0127310 | Msa1433310 | 0.829057 | 6.369599e-55 | -8.615850e-47 |
| Msa0128860 | Msa1433310 | 0.862285 | 5.647416e-64 | -8.615850e-47 |
| Msa0133540 | Msa1433310 | 0.821903 | 3.152650e-53 | -8.615850e-47 |
| Msa0137550 | Msa1433310 | 0.801369 | 9.302663e-49 | -8.615850e-47 |
| Msa0138920 | Msa1433310 | 0.814615 | 1.407419e-51 | -8.615850e-47 |
| Msa0140820 | Msa1433310 | 0.815623 | 8.407941e-52 | -8.615850e-47 |
| Msa0146340 | Msa1433310 | 0.842693 | 2.213274e-58 | -8.615850e-47 |
| Msa0163760 | Msa1433310 | 0.811993 | 5.300889e-51 | -8.615850e-47 |
| Msa0165950 | Msa1433310 | 0.810999 | 8.716233e-51 | -8.615850e-47 |
| Msa0167480 | Msa1433310 | 0.873076 | 1.945959e-67 | -8.615850e-47 |
| Msa0173530 | Msa1433310 | 0.829058 | 6.366262e-55 | -8.615850e-47 |
| Msa0174730 | Msa1433310 | 0.858807 | 6.391168e-63 | -8.615850e-47 |
| Msa0174770 | Msa1433310 | 0.836967 | 6.859396e-57 | -8.615850e-47 |
| Msa0181490 | Msa1433310 | 0.805347 | 1.394710e-49 | -8.615850e-47 |
| Msa0181610 | Msa1433310 | 0.827813 | 1.271416e-54 | -8.615850e-47 |
| Msa0187690 | Msa1433310 | 0.835668 | 1.467678e-56 | -8.615850e-47 |
| Msa0187930 | Msa1433310 | 0.842420 | 2.614904e-58 | -8.615850e-47 |
| Msa0189700 | Msa1433310 | 0.830126 | 3.500673e-55 | -8.615850e-47 |
| Msa0194540 | Msa1433310 | 0.832765 | 7.841361e-56 | -8.615850e-47 |
| Msa0199690 | Msa1433310 | 0.842553 | 2.410371e-58 | -8.615850e-47 |
| Msa0199880 | Msa1433310 | 0.832639 | 8.430027e-56 | -8.615850e-47 |
| Msa0218830 | Msa1433310 | 0.810607 | 1.059913e-50 | -8.615850e-47 |
| Msa0221030 | Msa1433310 | 0.868535 | 6.073497e-66 | -8.615850e-47 |
| Msa0226470 | Msa1433310 | 0.809224 | 2.103289e-50 | -8.615850e-47 |
| Msa0229760 | Msa1433310 | 0.805370 | 1.379536e-49 | -8.615850e-47 |
| Msa0231100 | Msa1433310 | 0.843215 | 1.606700e-58 | -8.615850e-47 |
| Msa0232010 | Msa1433310 | 0.832103 | 1.144100e-55 | -8.615850e-47 |
| Msa0232080 | Msa1433310 | 0.834235 | 3.369583e-56 | -8.615850e-47 |
| Msa1227690 | Msa1433310 | 0.818529 | 1.869581e-52 | -8.615850e-47 |
| Msa1229320 | Msa1433310 | 0.807394 | 5.164971e-50 | -8.615850e-47 |
| Msa1234680 | Msa1433310 | 0.805782 | 1.130516e-49 | -8.615850e-47 |
| Msa1257510 | Msa1433310 | 0.871349 | 7.314181e-67 | -8.615850e-47 |
| Msa1265630 | Msa1433310 | 0.850568 | 1.561335e-60 | -8.615850e-47 |
| Msa1270620 | Msa1433310 | 0.820652 | 6.125137e-53 | -8.615850e-47 |
| Msa1270690 | Msa1433310 | 0.820051 | 8.411509e-53 | -8.615850e-47 |
| Msa1292830 | Msa1433310 | 0.811134 | 8.147575e-51 | -8.615850e-47 |
| Msa1305050 | Msa1433310 | 0.955367 | 3.568133e-113 | -8.615850e-47 |
| Msa1306990 | Msa1433310 | 0.812738 | 3.645754e-51 | -8.615850e-47 |
| Msa1331710 | Msa1433310 | 0.836675 | 8.142672e-57 | -8.615850e-47 |
| Msa1338190 | Msa1433310 | 0.838766 | 2.366718e-57 | -8.615850e-47 |
| Msa1343260 | Msa1433310 | 0.855762 | 5.074993e-62 | -8.615850e-47 |
| Msa0366890 | Msa1433310 | 0.847302 | 1.260102e-59 | -8.615850e-47 |
| Msa0369450 | Msa1433310 | 0.856264 | 3.618368e-62 | -8.615850e-47 |
| Msa0376690 | Msa1433310 | 0.806547 | 7.800095e-50 | -8.615850e-47 |
| Msa0387730 | Msa1433310 | 0.821736 | 3.444676e-53 | -8.615850e-47 |
| Msa0414800 | Msa1433310 | 0.861086 | 1.313596e-63 | -8.615850e-47 |
| Msa0425220 | Msa1433310 | 0.806455 | 8.156335e-50 | -8.615850e-47 |
| Msa0427150 | Msa1433310 | 0.851497 | 8.537878e-61 | -8.615850e-47 |
| Msa0434920 | Msa1433310 | 0.807574 | 4.729941e-50 | -8.615850e-47 |
| Msa0440610 | Msa1433310 | 0.805322 | 1.411510e-49 | -8.615850e-47 |
| Msa0443390 | Msa1433310 | 0.867302 | 1.512326e-65 | -8.615850e-47 |
| Msa0458060 | Msa1433310 | 0.864688 | 1.015812e-64 | -8.615850e-47 |
| Msa0471590 | Msa1433310 | 0.817495 | 3.202165e-52 | -8.615850e-47 |
| Msa1006840 | Msa1433310 | 0.832793 | 7.716915e-56 | -8.615850e-47 |
| Msa1013400 | Msa1433310 | 0.842826 | 2.039475e-58 | -8.615850e-47 |
| Msa1019240 | Msa1433310 | 0.884328 | 2.106891e-71 | -8.615850e-47 |
| Msa1019260 | Msa1433310 | 0.885619 | 6.957656e-72 | -8.615850e-47 |
| Msa1043690 | Msa1433310 | 0.834415 | 3.036609e-56 | -8.615850e-47 |
| Msa1050210 | Msa1433310 | 0.806072 | 9.825819e-50 | -8.615850e-47 |
| Msa1072710 | Msa1433310 | 0.812283 | 4.583220e-51 | -8.615850e-47 |
| Msa1081150 | Msa1433310 | 0.837233 | 5.866891e-57 | -8.615850e-47 |
| Msa1081930 | Msa1433310 | 0.800227 | 1.590708e-48 | -8.615850e-47 |
| Msa1088490 | Msa1433310 | 0.856752 | 2.601428e-62 | -8.615850e-47 |
| Msa1093530 | Msa1433310 | 0.842236 | 2.925871e-58 | -8.615850e-47 |
| Msa1101600 | Msa1433310 | 0.818762 | 1.655305e-52 | -8.615850e-47 |
| Msa1104140 | Msa1433310 | 0.870945 | 9.943395e-67 | -8.615850e-47 |
| Msa1104210 | Msa1433310 | 0.889023 | 3.509550e-73 | -8.615850e-47 |
| Msa0244780 | Msa1433310 | 0.853573 | 2.186015e-61 | -8.615850e-47 |
| Msa0258850 | Msa1433310 | 0.808405 | 3.147512e-50 | -8.615850e-47 |
| Msa0262480 | Msa1433310 | 0.834522 | 2.854326e-56 | -8.615850e-47 |
| Msa0264570 | Msa1433310 | 0.810341 | 1.209641e-50 | -8.615850e-47 |
| Msa0268130 | Msa1433310 | 0.840802 | 6.980629e-58 | -8.615850e-47 |
| Msa0280430 | Msa1433310 | 0.834776 | 2.465194e-56 | -8.615850e-47 |
| Msa0280610 | Msa1433310 | 0.847052 | 1.475877e-59 | -8.615850e-47 |
| Msa0289580 | Msa1433310 | 0.840277 | 9.580312e-58 | -8.615850e-47 |
| Msa0289610 | Msa1433310 | 0.849941 | 2.340481e-60 | -8.615850e-47 |
| Msa0291520 | Msa1433310 | 0.812458 | 4.196972e-51 | -8.615850e-47 |
| Msa0298200 | Msa1433310 | 0.813769 | 2.164251e-51 | -8.615850e-47 |
| Msa0298990 | Msa1433310 | 0.848108 | 7.563400e-60 | -8.615850e-47 |
| Msa0300350 | Msa1433310 | 0.851922 | 6.472462e-61 | -8.615850e-47 |
| Msa0304590 | Msa1433310 | 0.833195 | 6.130978e-56 | -8.615850e-47 |
| Msa0304660 | Msa1433310 | 0.822399 | 2.418812e-53 | -8.615850e-47 |
| Msa0306690 | Msa1433310 | 0.809197 | 2.130984e-50 | -8.615850e-47 |
| Msa0313100 | Msa1433310 | 0.829825 | 4.145124e-55 | -8.615850e-47 |
| Msa0321640 | Msa1433310 | 0.831533 | 1.581923e-55 | -8.615850e-47 |
| Msa0322890 | Msa1433310 | 0.820797 | 5.673179e-53 | -8.615850e-47 |
| Msa0327300 | Msa1433310 | 0.854656 | 1.064329e-61 | -8.615850e-47 |
| Msa0327330 | Msa1433310 | 0.844462 | 7.447974e-59 | -8.615850e-47 |
| Msa0331700 | Msa1433310 | 0.824174 | 9.313854e-54 | -8.615850e-47 |
| Msa0336010 | Msa1433310 | 0.820206 | 7.751765e-53 | -8.615850e-47 |
| Msa0337650 | Msa1433310 | 0.817406 | 3.352065e-52 | -8.615850e-47 |
| Msa0341040 | Msa1433310 | 0.803620 | 3.195572e-49 | -8.615850e-47 |
| Msa0348830 | Msa1433310 | 0.839655 | 1.391754e-57 | -8.615850e-47 |
| Msa1119200 | Msa1433310 | 0.829805 | 4.192232e-55 | -8.615850e-47 |
| Msa1126510 | Msa1433310 | 0.885815 | 5.872960e-72 | -8.615850e-47 |
| Msa1126770 | Msa1433310 | 0.832411 | 9.598240e-56 | -8.615850e-47 |
| Msa1126830 | Msa1433310 | 0.831981 | 1.226463e-55 | -8.615850e-47 |
| Msa1138870 | Msa1433310 | 0.817333 | 3.482769e-52 | -8.615850e-47 |
| Msa1165780 | Msa1433310 | 0.825535 | 4.445999e-54 | -8.615850e-47 |
| Msa1165940 | Msa1433310 | 0.827134 | 1.849593e-54 | -8.615850e-47 |
| Msa1166330 | Msa1433310 | 0.836292 | 1.019295e-56 | -8.615850e-47 |
| Msa1166340 | Msa1433310 | 0.833623 | 4.794516e-56 | -8.615850e-47 |
| Msa1166860 | Msa1433310 | 0.894387 | 2.587977e-75 | -8.615850e-47 |
| Msa1166870 | Msa1433310 | 0.874091 | 8.855639e-68 | -8.615850e-47 |
| Msa1179950 | Msa1433310 | 0.826847 | 2.166872e-54 | -8.615850e-47 |
| Msa1179980 | Msa1433310 | 0.823849 | 1.109589e-53 | -8.615850e-47 |
| Msa1183450 | Msa1433310 | 0.848388 | 6.328148e-60 | -8.615850e-47 |
| Msa1184370 | Msa1433310 | 0.808380 | 3.186296e-50 | -8.615850e-47 |
| Msa1207270 | Msa1433310 | 0.829909 | 3.954667e-55 | -8.615850e-47 |
| Msa1208020 | Msa1433310 | 0.803567 | 3.277538e-49 | -8.615850e-47 |
| Msa1215820 | Msa1433310 | 0.848697 | 5.197030e-60 | -8.615850e-47 |
| Msa1218600 | Msa1433310 | 0.830800 | 2.395265e-55 | -8.615850e-47 |
| Msa0497490 | Msa1433310 | 0.808003 | 3.833741e-50 | -8.615850e-47 |
| Msa0521050 | Msa1433310 | 0.827450 | 1.554437e-54 | -8.615850e-47 |
| Msa0526540 | Msa1433310 | 0.878404 | 2.885497e-69 | -8.615850e-47 |
| Msa0527150 | Msa1433310 | 0.806903 | 6.562856e-50 | -8.615850e-47 |
| Msa0531650 | Msa1433310 | 0.837422 | 5.247948e-57 | -8.615850e-47 |
| Msa0534750 | Msa1433310 | 0.853118 | 2.950965e-61 | -8.615850e-47 |
| Msa0571920 | Msa1433310 | 0.855792 | 4.972855e-62 | -8.615850e-47 |
| Msa0576940 | Msa1433310 | 0.883360 | 4.791059e-71 | -8.615850e-47 |
| Msa0581070 | Msa1433310 | 0.817207 | 3.716767e-52 | -8.615850e-47 |
| Msa0581110 | Msa1433310 | 0.828888 | 6.999504e-55 | -8.615850e-47 |
| Msa0588360 | Msa1433310 | 0.848552 | 5.701130e-60 | -8.615850e-47 |
| Msa0590940 | Msa1433310 | 0.840011 | 1.123924e-57 | -8.615850e-47 |
| Msa0881290 | Msa1433310 | 0.831122 | 1.996362e-55 | -8.615850e-47 |
| Msa0902760 | Msa1433310 | 0.845966 | 2.919911e-59 | -8.615850e-47 |
| Msa0945480 | Msa1433310 | 0.827631 | 1.406411e-54 | -8.615850e-47 |
| Msa0953310 | Msa1433310 | 0.828721 | 7.678758e-55 | -8.615850e-47 |
| Msa0970030 | Msa1433310 | 0.803100 | 4.094610e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433310 | MtrunA17_Chr7g0272381 | 84.475 | 219 | 2 | 1 | 1 | 219 | 1 | 187 | 6.16e-127 | 356 |
| Msa1433310 | MtrunA17_Chr1g0192271 | 73.973 | 219 | 25 | 1 | 1 | 219 | 1 | 187 | 5.26e-111 | 315 |
| Msa1433310 | MtrunA17_Chr7g0269451 | 74.091 | 220 | 24 | 2 | 1 | 219 | 1 | 188 | 1.30e-108 | 310 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433310 | AT5G27850.1 | 69.863 | 219 | 34 | 1 | 1 | 219 | 1 | 187 | 2.54e-105 | 301 |
| Msa1433310 | AT3G05590.1 | 69.406 | 219 | 35 | 1 | 1 | 219 | 1 | 187 | 1.15e-104 | 300 |
| Msa1433310 | AT2G47570.1 | 64.220 | 218 | 45 | 2 | 3 | 219 | 1 | 186 | 1.41e-93 | 272 |
| Msa1433310 | AT3G05590.3 | 65.060 | 166 | 26 | 1 | 54 | 219 | 1 | 134 | 2.19e-71 | 214 |
| Msa1433310 | AT3G05590.2 | 65.060 | 166 | 26 | 1 | 54 | 219 | 1 | 134 | 2.19e-71 | 214 |
| Msa1433310 | AT5G27850.2 | 64.458 | 166 | 27 | 1 | 54 | 219 | 1 | 134 | 4.38e-70 | 210 |
Find 90 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGAAGAGTAGAGGATTT+AGG | 0.132509 | tig0027254:-9466 | Msa1433310:CDS |
| GAGGAAGAGTAGAGGATTTA+GGG | 0.159004 | tig0027254:-9465 | Msa1433310:CDS |
| AAAACTTAATACCCATTTAT+TGG | 0.197066 | tig0027254:+9280 | None:intergenic |
| ACTGCTTCCCTAGCATTCTT+TGG | 0.206364 | tig0027254:+9581 | None:intergenic |
| ATCAACTTTGACAGAGAAAT+TGG | 0.227766 | tig0027254:+10345 | None:intergenic |
| TAGCATTCTTTGGGCCTCTT+AGG | 0.233236 | tig0027254:+9591 | None:intergenic |
| ATTTGATGTCTGCCAATAAA+TGG | 0.237190 | tig0027254:-9292 | Msa1433310:three_prime_UTR |
| AGGTAGATATCATTGGATTT+AGG | 0.281327 | tig0027254:+11759 | None:intergenic |
| ACCATTGTAGCTCAGGGTTC+TGG | 0.304346 | tig0027254:+11935 | None:intergenic |
| GGTAAAATTGGTGTCGTTGT+GGG | 0.314974 | tig0027254:-10190 | Msa1433310:CDS |
| CTGCTTCCCTAGCATTCTTT+GGG | 0.325698 | tig0027254:+9582 | None:intergenic |
| ATCAATTACCATTGTAGCTC+AGG | 0.335636 | tig0027254:+11928 | None:intergenic |
| CTTCCCTTTGATCTTACATA+AGG | 0.356102 | tig0027254:+9512 | None:intergenic |
| AATAACGTGTTGCTTAGATT+TGG | 0.356315 | tig0027254:-9154 | Msa1433310:three_prime_UTR |
| GGGCTGTAACAGATGATATC+AGG | 0.365645 | tig0027254:-10168 | Msa1433310:CDS |
| TATATCGCTTCCTTGTTAGA+AGG | 0.375930 | tig0027254:-10431 | Msa1433310:CDS |
| GTTATGCAGGACGGTAAAAT+TGG | 0.388471 | tig0027254:-10202 | Msa1433310:intron |
| AGCCGCGAATGCGTATTTAT+AGG | 0.399254 | tig0027254:+11986 | None:intergenic |
| GGATTTAGGTTCGGTTCGTT+TGG | 0.400306 | tig0027254:+11773 | None:intergenic |
| TTACATTCGCCAACCATGAT+TGG | 0.408818 | tig0027254:+9200 | None:intergenic |
| GAGCTTGAGGTAGATATCAT+TGG | 0.411467 | tig0027254:+11752 | None:intergenic |
| CTTTGATCTTACATAAGGCT+TGG | 0.418522 | tig0027254:+9517 | None:intergenic |
| CAGGGGATCGATCTCAAAGC+TGG | 0.420599 | tig0027254:-11813 | Msa1433310:CDS |
| GATATCATTGGATTTAGGTT+CGG | 0.438911 | tig0027254:+11764 | None:intergenic |
| TCTACTCTTCCTCTTTCCTC+TGG | 0.440211 | tig0027254:+9475 | None:intergenic |
| TCTGTCCAAGGGGAGCTCTA+AGG | 0.443443 | tig0027254:+10038 | None:intergenic |
| GGGCAAGTTGATCAAATGTT+AGG | 0.445307 | tig0027254:+10059 | None:intergenic |
| CGGTAAAATTGGTGTCGTTG+TGG | 0.446137 | tig0027254:-10191 | Msa1433310:CDS |
| TTGAGATTGTTTGTTATACA+TGG | 0.458757 | tig0027254:-9332 | Msa1433310:three_prime_UTR |
| ATGTTATATTTATTGTTACA+TGG | 0.459722 | tig0027254:-9366 | Msa1433310:three_prime_UTR |
| GTGCCGTCTCTGTGAACCTA+AGG | 0.461512 | tig0027254:+10113 | None:intergenic |
| AAGCCTTATGTAAGATCAAA+GGG | 0.467688 | tig0027254:-9515 | Msa1433310:CDS |
| AAACACTTTGGTCGTGCTCC+TGG | 0.468460 | tig0027254:-9557 | Msa1433310:CDS |
| CTGTCCAAGGGGAGCTCTAA+GGG | 0.473811 | tig0027254:+10039 | None:intergenic |
| GTAAAATTGGTGTCGTTGTG+GGG | 0.476743 | tig0027254:-10189 | Msa1433310:CDS |
| CATTCTTTGGGCCTCTTAGG+AGG | 0.481833 | tig0027254:+9594 | None:intergenic |
| TAAGAGGCCCAAAGAATGCT+AGG | 0.491610 | tig0027254:-9589 | Msa1433310:CDS |
| CAAGCCTTATGTAAGATCAA+AGG | 0.498391 | tig0027254:-9516 | Msa1433310:CDS |
| CGCCTATAAATACGCATTCG+CGG | 0.505487 | tig0027254:-11988 | None:intergenic |
| TGAATTCAGGTCCTCCTAAG+AGG | 0.506122 | tig0027254:-9605 | Msa1433310:intron |
| AAGAGAAGGCCAGAGGAAAG+AGG | 0.507573 | tig0027254:-9484 | Msa1433310:CDS |
| GAATGGCTGTGTGGCACACC+AGG | 0.520029 | tig0027254:+9539 | None:intergenic |
| GAAGTATCAAAACTGTAGAA+AGG | 0.522174 | tig0027254:+9417 | None:intergenic |
| CTCATACCGTGTTCTGTCCA+AGG | 0.524348 | tig0027254:+10026 | None:intergenic |
| ATCTTACATAAGGCTTGGAA+TGG | 0.527336 | tig0027254:+9522 | None:intergenic |
| TGCCCTTAGGTTCACAGAGA+CGG | 0.538036 | tig0027254:-10116 | Msa1433310:CDS |
| CTTCCTGTGAGTAGTTGTGA+TGG | 0.544566 | tig0027254:-9763 | Msa1433310:CDS |
| TCAATTACCATTGTAGCTCA+GGG | 0.544705 | tig0027254:+11929 | None:intergenic |
| AGAGCTAATATAACAAAACT+TGG | 0.544807 | tig0027254:+9715 | None:intergenic |
| TTTGATGTCTGCCAATAAAT+GGG | 0.547480 | tig0027254:-9291 | Msa1433310:three_prime_UTR |
| AAAGTTGATCGAGTACATGA+AGG | 0.551641 | tig0027254:-10331 | Msa1433310:CDS |
| TTCCTGTGAGTAGTTGTGAT+GGG | 0.552866 | tig0027254:-9762 | Msa1433310:CDS |
| AAGTTGATCGAGTACATGAA+GGG | 0.557741 | tig0027254:-10330 | Msa1433310:CDS |
| TCCAGAACCCTGAGCTACAA+TGG | 0.565719 | tig0027254:-11936 | Msa1433310:intron |
| TTTAGTTATCTACTTAGAGA+GGG | 0.568102 | tig0027254:-9259 | Msa1433310:three_prime_UTR |
| GGACCTTGACGAGGAGCTTG+AGG | 0.569815 | tig0027254:+11739 | None:intergenic |
| AGGGGATCGATCTCAAAGCT+GGG | 0.574140 | tig0027254:-11812 | Msa1433310:CDS |
| CTTGCCCTTAGAGCTCCCCT+TGG | 0.575267 | tig0027254:-10043 | Msa1433310:CDS |
| TGCTGTCAGTCCTTCTAACA+AGG | 0.579764 | tig0027254:+10421 | None:intergenic |
| ATTGTAGCTCAGGGTTCTGG+AGG | 0.588756 | tig0027254:+11938 | None:intergenic |
| GGCTGTAACAGATGATATCA+GGG | 0.589836 | tig0027254:-10167 | Msa1433310:CDS |
| AGGGAAGCAGTAAAACACTT+TGG | 0.592083 | tig0027254:-9569 | Msa1433310:CDS |
| TCATACCGTGTTCTGTCCAA+GGG | 0.595030 | tig0027254:+10027 | None:intergenic |
| CAAGCGCTTGTTCATGAGCA+AGG | 0.595633 | tig0027254:-10379 | Msa1433310:CDS |
| AACTTTGACAGAGAAATTGG+AGG | 0.595797 | tig0027254:+10348 | None:intergenic |
| ATCCCATCACAACTACTCAC+AGG | 0.598113 | tig0027254:+9760 | None:intergenic |
| AAAGGGAAGGAAACAAGAGA+AGG | 0.607313 | tig0027254:-9498 | Msa1433310:CDS |
| CGTGCAAGAATAGAGAAGGC+GGG | 0.608166 | tig0027254:-10091 | Msa1433310:CDS |
| TTGACAGAGAAATTGGAGGT+CGG | 0.608358 | tig0027254:+10352 | None:intergenic |
| AGCTCCCCTTGGACAGAACA+CGG | 0.610780 | tig0027254:-10032 | Msa1433310:intron |
| TGCCGTCTCTGTGAACCTAA+GGG | 0.611665 | tig0027254:+10114 | None:intergenic |
| CTACCTCAAGCTCCTCGTCA+AGG | 0.612377 | tig0027254:-11742 | Msa1433310:intron |
| TAAAATTGGTGTCGTTGTGG+GGG | 0.613763 | tig0027254:-10188 | Msa1433310:CDS |
| CTTATGTAAGATCAAAGGGA+AGG | 0.618781 | tig0027254:-9511 | Msa1433310:CDS |
| GGCACGTGCAAGAATAGAGA+AGG | 0.623253 | tig0027254:-10095 | Msa1433310:CDS |
| AGGAAACAAGAGAAGGCCAG+AGG | 0.627136 | tig0027254:-9491 | Msa1433310:CDS |
| AGAGGAAAGAGGAAGAGTAG+AGG | 0.627781 | tig0027254:-9473 | Msa1433310:CDS |
| AAGAGGCCCAAAGAATGCTA+GGG | 0.636036 | tig0027254:-9588 | Msa1433310:CDS |
| GGGGATCGATCTCAAAGCTG+GGG | 0.637375 | tig0027254:-11811 | Msa1433310:CDS |
| AAATGGAATGGACCTTGACG+AGG | 0.641410 | tig0027254:+11730 | None:intergenic |
| AGTTGATCGAGTACATGAAG+GGG | 0.649783 | tig0027254:-10329 | Msa1433310:CDS |
| GATCGAGTACATGAAGGGGA+AGG | 0.663524 | tig0027254:-10325 | Msa1433310:intron |
| ACGTGCAAGAATAGAGAAGG+CGG | 0.663924 | tig0027254:-10092 | Msa1433310:CDS |
| TAGTTGTGATGGGATAGCCT+TGG | 0.678097 | tig0027254:-9752 | Msa1433310:CDS |
| TGGTAAGCTCAACATAACCA+AGG | 0.681434 | tig0027254:+9735 | None:intergenic |
| GCAAGAATAGAGAAGGCGGG+TGG | 0.710757 | tig0027254:-10088 | Msa1433310:CDS |
| CATACCGTGTTCTGTCCAAG+GGG | 0.721874 | tig0027254:+10028 | None:intergenic |
| GGGATCGATCTCAAAGCTGG+GGG | 0.738953 | tig0027254:-11810 | Msa1433310:CDS |
| GACTGACAGCAATTTCAATG+CGG | 0.745385 | tig0027254:-10409 | Msa1433310:CDS |
| TAAGGCTTGGAATGGCTGTG+TGG | 0.750805 | tig0027254:+9530 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACGATAAAATAAAAATTA+TGG | + | tig0027254:9685-9704 | None:intergenic | 10.0% |
| !!! | ATTTTATAAGACATAGAAAA+TGG | + | tig0027254:9421-9440 | None:intergenic | 15.0% |
| !! | AGAATGCAAATTATTTATAA+CGG | + | tig0027254:10355-10374 | None:intergenic | 15.0% |
| !! | AACTAAACAATTATAATTTC+TGG | + | tig0027254:10866-10885 | None:intergenic | 15.0% |
| !! | AACAAGTATATTAATTAAGT+TGG | + | tig0027254:11507-11526 | None:intergenic | 15.0% |
| !! | ATGTTATATTTATTGTTACA+TGG | - | tig0027254:11765-11784 | Msa1433310:CDS | 15.0% |
| !!! | TTAATTTGAATTTGATATGC+AGG | - | tig0027254:9299-9318 | Msa1433310:three_prime_UTR | 20.0% |
| !! | TAATTTGAATTTGATATGCA+GGG | - | tig0027254:9300-9319 | Msa1433310:three_prime_UTR | 20.0% |
| !!! | AAATTACTTTTCAATGTATC+AGG | + | tig0027254:9848-9867 | None:intergenic | 20.0% |
| !! | AGCTTAATTATCAACAAAAA+TGG | + | tig0027254:9913-9932 | None:intergenic | 20.0% |
| !! | AACTTTGACATTAACAAAAA+TGG | + | tig0027254:10393-10412 | None:intergenic | 20.0% |
| !! | GTCAAAGTTTATAACATATA+AGG | - | tig0027254:10404-10423 | Msa1433310:CDS | 20.0% |
| !! | GTTTATAACATATAAGGATT+TGG | - | tig0027254:10410-10429 | Msa1433310:CDS | 20.0% |
| !! | TCTTTAATATCAATATACTG+AGG | - | tig0027254:10520-10539 | Msa1433310:intron | 20.0% |
| !! | CTTTAATATCAATATACTGA+GGG | - | tig0027254:10521-10540 | Msa1433310:intron | 20.0% |
| !! | AAAAAATGTTTATGATTGTG+TGG | - | tig0027254:10578-10597 | Msa1433310:intron | 20.0% |
| !!! | TCATCAATTATAAGAGATTT+TGG | - | tig0027254:11222-11241 | Msa1433310:intron | 20.0% |
| !!! | TTAATATACTTGTTGAATTC+AGG | - | tig0027254:11513-11532 | Msa1433310:intron | 20.0% |
| !! | AAAACTTAATACCCATTTAT+TGG | + | tig0027254:11854-11873 | None:intergenic | 20.0% |
| !!! | TTTTAGAGTAGATAGAGATT+AGG | + | tig0027254:9234-9253 | None:intergenic | 25.0% |
| ! | AATTTGAATTTGATATGCAG+GGG | - | tig0027254:9301-9320 | Msa1433310:three_prime_UTR | 25.0% |
| ! | ATAAGACATAGAAAATGGAA+TGG | + | tig0027254:9416-9435 | None:intergenic | 25.0% |
| ! | TTATGTGATTATTGTGATCA+AGG | - | tig0027254:9471-9490 | Msa1433310:CDS | 25.0% |
| ! | TTAAAATAAAATACACTGCG+AGG | + | tig0027254:9613-9632 | None:intergenic | 25.0% |
| ! | ATTCTATCTCCATATGAAAA+TGG | + | tig0027254:9802-9821 | None:intergenic | 25.0% |
| ! | AATTATAATGCGAATACATG+TGG | - | tig0027254:9941-9960 | Msa1433310:intron | 25.0% |
| !! | ACTATGATCTAATTTTCTCA+TGG | - | tig0027254:10897-10916 | Msa1433310:intron | 25.0% |
| !! | CTATGATCTAATTTTCTCAT+GGG | - | tig0027254:10898-10917 | Msa1433310:intron | 25.0% |
| !!! | TGCTCTAAAAACACAAATAT+TGG | + | tig0027254:11137-11156 | None:intergenic | 25.0% |
| !!! | TTGGTGTCTATTTTATTGAT+TGG | - | tig0027254:11252-11271 | Msa1433310:intron | 25.0% |
| !!! | TATTTTATTGATTGGAGACT+TGG | - | tig0027254:11260-11279 | Msa1433310:intron | 25.0% |
| !! | TGGTTTGAATGGTATATTTT+TGG | - | tig0027254:11280-11299 | Msa1433310:intron | 25.0% |
| ! | AGAGCTAATATAACAAAACT+TGG | + | tig0027254:11419-11438 | None:intergenic | 25.0% |
| !!! | TTGAGATTGTTTGTTATACA+TGG | - | tig0027254:11799-11818 | Msa1433310:CDS | 25.0% |
| !!! | TTTTAGTTATCTACTTAGAG+AGG | - | tig0027254:11871-11890 | Msa1433310:intron | 25.0% |
| ! | TTTAGTTATCTACTTAGAGA+GGG | - | tig0027254:11872-11891 | Msa1433310:intron | 25.0% |
| !! | GTCTTCTCTGTATTTAGTTT+TGG | - | tig0027254:9270-9289 | Msa1433310:three_prime_UTR | 30.0% |
| ! | GATATCATTGGATTTAGGTT+CGG | + | tig0027254:9370-9389 | None:intergenic | 30.0% |
| AGGTAGATATCATTGGATTT+AGG | + | tig0027254:9375-9394 | None:intergenic | 30.0% | |
| TTGGAACTAATTGTATTCCT+TGG | + | tig0027254:9574-9593 | None:intergenic | 30.0% | |
| AATTATAGTCCTAGACCTTA+CGG | + | tig0027254:9746-9765 | None:intergenic | 30.0% | |
| ! | ACTTTTCAATGTATCAGGAA+TGG | + | tig0027254:9843-9862 | None:intergenic | 30.0% |
| ATAGCTTAAAACACACACTA+AGG | + | tig0027254:9990-10009 | None:intergenic | 30.0% | |
| ! | AATTTTATTCCTGGACCTTA+TGG | + | tig0027254:10051-10070 | None:intergenic | 30.0% |
| ! | GTTGGAACTAATTTTATTCC+TGG | + | tig0027254:10060-10079 | None:intergenic | 30.0% |
| ATGCATATACTTAGTCCTAA+TGG | + | tig0027254:10121-10140 | None:intergenic | 30.0% | |
| ! | AAATGTGTTTTCGATCAACT+TGG | + | tig0027254:10189-10208 | None:intergenic | 30.0% |
| GTTGGAACTAATTATATTCC+TGG | + | tig0027254:10268-10287 | None:intergenic | 30.0% | |
| GTACAATTGATTATATCCAG+AGG | + | tig0027254:10306-10325 | None:intergenic | 30.0% | |
| !! | TAGGTGTTTGTTGTTGATAT+AGG | - | tig0027254:10441-10460 | Msa1433310:intron | 30.0% |
| TGGTTAAAAGTAACATCACT+GGG | + | tig0027254:10477-10496 | None:intergenic | 30.0% | |
| ATGGTTAAAAGTAACATCAC+TGG | + | tig0027254:10478-10497 | None:intergenic | 30.0% | |
| ATCAACTTTGACAGAGAAAT+TGG | + | tig0027254:10789-10808 | None:intergenic | 30.0% | |
| TATTAAAAATTGCTGCCCTT+AGG | - | tig0027254:11002-11021 | Msa1433310:intron | 30.0% | |
| !!! | AAGAGATTTTGGTGTCTATT+TGG | - | tig0027254:11233-11252 | Msa1433310:intron | 30.0% |
| ! | AAGCCTTATGTAAGATCAAA+GGG | - | tig0027254:11616-11635 | Msa1433310:intron | 30.0% |
| ! | GAAGTATCAAAACTGTAGAA+AGG | + | tig0027254:11717-11736 | None:intergenic | 30.0% |
| ATTTGATGTCTGCCAATAAA+TGG | - | tig0027254:11839-11858 | Msa1433310:intron | 30.0% | |
| TTTGATGTCTGCCAATAAAT+GGG | - | tig0027254:11840-11859 | Msa1433310:intron | 30.0% | |
| ! | CATTACTCTTTTACCAATCA+TGG | - | tig0027254:11918-11937 | Msa1433310:intron | 30.0% |
| !! | AATAACGTGTTGCTTAGATT+TGG | - | tig0027254:11977-11996 | Msa1433310:five_prime_UTR | 30.0% |
| TCAATTACCATTGTAGCTCA+GGG | + | tig0027254:9205-9224 | None:intergenic | 35.0% | |
| ATCAATTACCATTGTAGCTC+AGG | + | tig0027254:9206-9225 | None:intergenic | 35.0% | |
| !! | AATTGTATTCCTTGGCCTTA+CGG | + | tig0027254:9566-9585 | None:intergenic | 35.0% |
| ATACTTAGTCCTAATGGTGA+TGG | + | tig0027254:10115-10134 | None:intergenic | 35.0% | |
| AATTATATTCCTGGACCTTC+CGG | + | tig0027254:10259-10278 | None:intergenic | 35.0% | |
| ! | TAAGGATTTGGCTTCATGAT+AGG | - | tig0027254:10422-10441 | Msa1433310:CDS | 35.0% |
| TGTTGTTGATATAGGACTTG+AGG | - | tig0027254:10449-10468 | Msa1433310:intron | 35.0% | |
| TCATGTAATCAGCATTAGCA+TGG | + | tig0027254:10497-10516 | None:intergenic | 35.0% | |
| TGCAACACATGGAATTAGAA+TGG | + | tig0027254:10672-10691 | None:intergenic | 35.0% | |
| TATATCGCTTCCTTGTTAGA+AGG | - | tig0027254:10700-10719 | Msa1433310:intron | 35.0% | |
| AACTTTGACAGAGAAATTGG+AGG | + | tig0027254:10786-10805 | None:intergenic | 35.0% | |
| ! | AAAGTTGATCGAGTACATGA+AGG | - | tig0027254:10800-10819 | Msa1433310:intron | 35.0% |
| ! | AAGTTGATCGAGTACATGAA+GGG | - | tig0027254:10801-10820 | Msa1433310:intron | 35.0% |
| ATGGGATTATTGTGTTATGC+AGG | - | tig0027254:10916-10935 | Msa1433310:intron | 35.0% | |
| GATTATTGTGTTATGCAGGA+CGG | - | tig0027254:10920-10939 | Msa1433310:intron | 35.0% | |
| ! | GGGCAGCAATTTTTAATACT+GGG | + | tig0027254:11000-11019 | None:intergenic | 35.0% |
| ! | AGGGCAGCAATTTTTAATAC+TGG | + | tig0027254:11001-11020 | None:intergenic | 35.0% |
| TAATGACGCAATGGATAGTA+AGG | + | tig0027254:11172-11191 | None:intergenic | 35.0% | |
| ATCCATTGCGTCATTATGAT+TGG | - | tig0027254:11176-11195 | Msa1433310:intron | 35.0% | |
| TCCATTGCGTCATTATGATT+GGG | - | tig0027254:11177-11196 | Msa1433310:intron | 35.0% | |
| TTGGCTTCATAAAAGCTTGT+TGG | + | tig0027254:11488-11507 | None:intergenic | 35.0% | |
| ATCTTACATAAGGCTTGGAA+TGG | + | tig0027254:11612-11631 | None:intergenic | 35.0% | |
| CTTTGATCTTACATAAGGCT+TGG | + | tig0027254:11617-11636 | None:intergenic | 35.0% | |
| ! | CAAGCCTTATGTAAGATCAA+AGG | - | tig0027254:11615-11634 | Msa1433310:intron | 35.0% |
| CTTCCCTTTGATCTTACATA+AGG | + | tig0027254:11622-11641 | None:intergenic | 35.0% | |
| CTTATGTAAGATCAAAGGGA+AGG | - | tig0027254:11620-11639 | Msa1433310:intron | 35.0% | |
| ! | ACTCTTTTACCAATCATGGT+TGG | - | tig0027254:11922-11941 | Msa1433310:intron | 35.0% |
| GAGCTTGAGGTAGATATCAT+TGG | + | tig0027254:9382-9401 | None:intergenic | 40.0% | |
| !! | CCATATGAAAATGGACTGAG+AGG | + | tig0027254:9793-9812 | None:intergenic | 40.0% |
| ! | CCTCTCAGTCCATTTTCATA+TGG | - | tig0027254:9790-9809 | Msa1433310:intron | 40.0% |
| ATAGAATAGCTTCTTCAGCC+AGG | - | tig0027254:9815-9834 | Msa1433310:intron | 40.0% | |
| AATGTATCAGGAATGGTTCC+TGG | + | tig0027254:9836-9855 | None:intergenic | 40.0% | |
| ATAGCTGATTGTGCAACACA+TGG | + | tig0027254:10683-10702 | None:intergenic | 40.0% | |
| GACTGACAGCAATTTCAATG+CGG | - | tig0027254:10722-10741 | Msa1433310:intron | 40.0% | |
| TTGACAGAGAAATTGGAGGT+CGG | + | tig0027254:10782-10801 | None:intergenic | 40.0% | |
| AGTTGATCGAGTACATGAAG+GGG | - | tig0027254:10802-10821 | Msa1433310:intron | 40.0% | |
| GTTATGCAGGACGGTAAAAT+TGG | - | tig0027254:10929-10948 | Msa1433310:intron | 40.0% | |
| !! | GGTAAAATTGGTGTCGTTGT+GGG | - | tig0027254:10941-10960 | Msa1433310:intron | 40.0% |
| !! | GTAAAATTGGTGTCGTTGTG+GGG | - | tig0027254:10942-10961 | Msa1433310:intron | 40.0% |
| !! | TAAAATTGGTGTCGTTGTGG+GGG | - | tig0027254:10943-10962 | Msa1433310:intron | 40.0% |
| GGCTGTAACAGATGATATCA+GGG | - | tig0027254:10964-10983 | Msa1433310:intron | 40.0% | |
| !! | GGGCAAGTTGATCAAATGTT+AGG | + | tig0027254:11075-11094 | None:intergenic | 40.0% |
| TCCCAATCATAATGACGCAA+TGG | + | tig0027254:11181-11200 | None:intergenic | 40.0% | |
| ! | GATTGGAGACTTGGTTTGAA+TGG | - | tig0027254:11269-11288 | Msa1433310:intron | 40.0% |
| TTCCTGTGAGTAGTTGTGAT+GGG | - | tig0027254:11369-11388 | Msa1433310:intron | 40.0% | |
| TGGTAAGCTCAACATAACCA+AGG | + | tig0027254:11399-11418 | None:intergenic | 40.0% | |
| TTCCTGTGAGTAGTTGTGAT+GGG | - | tig0027254:11369-11388 | Msa1433310:intron | 40.0% | |
| TGGTAAGCTCAACATAACCA+AGG | + | tig0027254:11399-11418 | None:intergenic | 40.0% | |
| AGGGAAGCAGTAAAACACTT+TGG | - | tig0027254:11562-11581 | Msa1433310:intron | 40.0% | |
| AAAGGGAAGGAAACAAGAGA+AGG | - | tig0027254:11633-11652 | Msa1433310:intron | 40.0% | |
| AGAGGAAGAGTAGAGGATTT+AGG | - | tig0027254:11665-11684 | Msa1433310:intron | 40.0% | |
| GAGGAAGAGTAGAGGATTTA+GGG | - | tig0027254:11666-11685 | Msa1433310:intron | 40.0% | |
| TTACATTCGCCAACCATGAT+TGG | + | tig0027254:11934-11953 | None:intergenic | 40.0% | |
| ! | GGATTTAGGTTCGGTTCGTT+TGG | + | tig0027254:9361-9380 | None:intergenic | 45.0% |
| AAATGGAATGGACCTTGACG+AGG | + | tig0027254:9404-9423 | None:intergenic | 45.0% | |
| AATGTGATCCCAGCTCTATG+AGG | - | tig0027254:9540-9559 | Msa1433310:CDS | 45.0% | |
| AGGCTCAGACAAATGTGTGT+TGG | + | tig0027254:9593-9612 | None:intergenic | 45.0% | |
| AATGTGATCCCAGCTCTATG+AGG | - | tig0027254:9540-9559 | Msa1433310:CDS | 45.0% | |
| AGGCTCAGACAAATGTGTGT+TGG | + | tig0027254:9593-9612 | None:intergenic | 45.0% | |
| CCTTATGGTCTCATAGAGCT+GGG | + | tig0027254:10036-10055 | None:intergenic | 45.0% | |
| ACCTTATGGTCTCATAGAGC+TGG | + | tig0027254:10037-10056 | None:intergenic | 45.0% | |
| TCTATGAGACCATAAGGTCC+AGG | - | tig0027254:10039-10058 | Msa1433310:CDS | 45.0% | |
| TCTCTCACACCATCACCATT+AGG | - | tig0027254:10103-10122 | Msa1433310:CDS | 45.0% | |
| AGGCTCAGACAAATGTGTGT+TGG | + | tig0027254:9593-9612 | None:intergenic | 45.0% | |
| TGCTGTCAGTCCTTCTAACA+AGG | + | tig0027254:10713-10732 | None:intergenic | 45.0% | |
| !! | CGGTAAAATTGGTGTCGTTG+TGG | - | tig0027254:10940-10959 | Msa1433310:intron | 45.0% |
| GGGCTGTAACAGATGATATC+AGG | - | tig0027254:10963-10982 | Msa1433310:intron | 45.0% | |
| ACGTGCAAGAATAGAGAAGG+CGG | - | tig0027254:11039-11058 | Msa1433310:intron | 45.0% | |
| TCATACCGTGTTCTGTCCAA+GGG | + | tig0027254:11107-11126 | None:intergenic | 45.0% | |
| CTTCCTGTGAGTAGTTGTGA+TGG | - | tig0027254:11368-11387 | Msa1433310:intron | 45.0% | |
| ATCCCATCACAACTACTCAC+AGG | + | tig0027254:11374-11393 | None:intergenic | 45.0% | |
| ! | TAGTTGTGATGGGATAGCCT+TGG | - | tig0027254:11379-11398 | Msa1433310:intron | 45.0% |
| CTTCCTGTGAGTAGTTGTGA+TGG | - | tig0027254:11368-11387 | Msa1433310:intron | 45.0% | |
| ATCCCATCACAACTACTCAC+AGG | + | tig0027254:11374-11393 | None:intergenic | 45.0% | |
| ! | TAGTTGTGATGGGATAGCCT+TGG | - | tig0027254:11379-11398 | Msa1433310:intron | 45.0% |
| TGAATTCAGGTCCTCCTAAG+AGG | - | tig0027254:11526-11545 | Msa1433310:intron | 45.0% | |
| TAGCATTCTTTGGGCCTCTT+AGG | + | tig0027254:11543-11562 | None:intergenic | 45.0% | |
| TAAGAGGCCCAAAGAATGCT+AGG | - | tig0027254:11542-11561 | Msa1433310:intron | 45.0% | |
| AAGAGGCCCAAAGAATGCTA+GGG | - | tig0027254:11543-11562 | Msa1433310:intron | 45.0% | |
| CTGCTTCCCTAGCATTCTTT+GGG | + | tig0027254:11552-11571 | None:intergenic | 45.0% | |
| ACTGCTTCCCTAGCATTCTT+TGG | + | tig0027254:11553-11572 | None:intergenic | 45.0% | |
| TCTACTCTTCCTCTTTCCTC+TGG | + | tig0027254:11659-11678 | None:intergenic | 45.0% | |
| AGAGGAAAGAGGAAGAGTAG+AGG | - | tig0027254:11658-11677 | Msa1433310:intron | 45.0% | |
| !! | ATAAATAATAAATACAAAAA+CGG | + | tig0027254:9449-9468 | None:intergenic | 5.0% |
| ! | ATTGTAGCTCAGGGTTCTGG+AGG | + | tig0027254:9196-9215 | None:intergenic | 50.0% |
| TCCAGAACCCTGAGCTACAA+TGG | - | tig0027254:9195-9214 | Msa1433310:three_prime_UTR | 50.0% | |
| ACCATTGTAGCTCAGGGTTC+TGG | + | tig0027254:9199-9218 | None:intergenic | 50.0% | |
| AGGGGATCGATCTCAAAGCT+GGG | - | tig0027254:9319-9338 | Msa1433310:three_prime_UTR | 50.0% | |
| TCTATGAGGCCGTAAGGTCT+AGG | - | tig0027254:9734-9753 | Msa1433310:CDS | 50.0% | |
| CCCAGCTCTATGAGACCATA+AGG | - | tig0027254:10033-10052 | Msa1433310:CDS | 50.0% | |
| AGGCTCAGACAAGTGTGTGT+TGG | + | tig0027254:10078-10097 | None:intergenic | 50.0% | |
| ! | TGATGGTGTGAGAGATGCAG+AGG | + | tig0027254:10098-10117 | None:intergenic | 50.0% |
| TGATCCCAGCTCTATGAGAC+CGG | - | tig0027254:10029-10048 | Msa1433310:intron | 50.0% | |
| CACACATTTGTCTGAGCCTC+TGG | - | tig0027254:9594-9613 | Msa1433310:CDS | 50.0% | |
| CAAGCGCTTGTTCATGAGCA+AGG | - | tig0027254:10752-10771 | Msa1433310:intron | 50.0% | |
| GATCGAGTACATGAAGGGGA+AGG | - | tig0027254:10806-10825 | Msa1433310:intron | 50.0% | |
| TGCCCTTAGGTTCACAGAGA+CGG | - | tig0027254:11015-11034 | Msa1433310:intron | 50.0% | |
| TGCCGTCTCTGTGAACCTAA+GGG | + | tig0027254:11020-11039 | None:intergenic | 50.0% | |
| GGCACGTGCAAGAATAGAGA+AGG | - | tig0027254:11036-11055 | Msa1433310:intron | 50.0% | |
| CGTGCAAGAATAGAGAAGGC+GGG | - | tig0027254:11040-11059 | Msa1433310:intron | 50.0% | |
| CATACCGTGTTCTGTCCAAG+GGG | + | tig0027254:11106-11125 | None:intergenic | 50.0% | |
| CTCATACCGTGTTCTGTCCA+AGG | + | tig0027254:11108-11127 | None:intergenic | 50.0% | |
| CATTCTTTGGGCCTCTTAGG+AGG | + | tig0027254:11540-11559 | None:intergenic | 50.0% | |
| AAACACTTTGGTCGTGCTCC+TGG | - | tig0027254:11574-11593 | Msa1433310:intron | 50.0% | |
| TAAGGCTTGGAATGGCTGTG+TGG | + | tig0027254:11604-11623 | None:intergenic | 50.0% | |
| AGGAAACAAGAGAAGGCCAG+AGG | - | tig0027254:11640-11659 | Msa1433310:intron | 50.0% | |
| AAGAGAAGGCCAGAGGAAAG+AGG | - | tig0027254:11647-11666 | Msa1433310:intron | 50.0% | |
| CAGGGGATCGATCTCAAAGC+TGG | - | tig0027254:9318-9337 | Msa1433310:three_prime_UTR | 55.0% | |
| GGGGATCGATCTCAAAGCTG+GGG | - | tig0027254:9320-9339 | Msa1433310:three_prime_UTR | 55.0% | |
| GGGATCGATCTCAAAGCTGG+GGG | - | tig0027254:9321-9340 | Msa1433310:three_prime_UTR | 55.0% | |
| CTACCTCAAGCTCCTCGTCA+AGG | - | tig0027254:9389-9408 | Msa1433310:three_prime_UTR | 55.0% | |
| CCTTACGGCCTCATAGAGCT+GGG | + | tig0027254:9551-9570 | None:intergenic | 55.0% | |
| TCTATGAGGCCGTAAGGCCA+AGG | - | tig0027254:9554-9573 | Msa1433310:CDS | 55.0% | |
| CCTTACGGCCTCATAGAGCT+GGG | + | tig0027254:9551-9570 | None:intergenic | 55.0% | |
| ACCTTACGGCCTCATAGAGC+TGG | + | tig0027254:9732-9751 | None:intergenic | 55.0% | |
| CCTTCCGGTCTCATAGAGCT+GGG | + | tig0027254:10244-10263 | None:intergenic | 55.0% | |
| ACCTTCCGGTCTCATAGAGC+TGG | + | tig0027254:10245-10264 | None:intergenic | 55.0% | |
| TCTATGAGACCGGAAGGTCC+AGG | - | tig0027254:10247-10266 | Msa1433310:intron | 55.0% | |
| GTGCCGTCTCTGTGAACCTA+AGG | + | tig0027254:11021-11040 | None:intergenic | 55.0% | |
| GCAAGAATAGAGAAGGCGGG+TGG | - | tig0027254:11043-11062 | Msa1433310:intron | 55.0% | |
| ! | CTGTCCAAGGGGAGCTCTAA+GGG | + | tig0027254:11095-11114 | None:intergenic | 55.0% |
| TCTGTCCAAGGGGAGCTCTA+AGG | + | tig0027254:11096-11115 | None:intergenic | 55.0% | |
| AGCTCCCCTTGGACAGAACA+CGG | - | tig0027254:11099-11118 | Msa1433310:intron | 55.0% | |
| GGACCTTGACGAGGAGCTTG+AGG | + | tig0027254:9395-9414 | None:intergenic | 60.0% | |
| CCCAGCTCTATGAGGCCGTA+AGG | - | tig0027254:9548-9567 | Msa1433310:CDS | 60.0% | |
| GCCTTACGGCCTCATAGAGC+TGG | + | tig0027254:9552-9571 | None:intergenic | 60.0% | |
| CCCAGCTCTATGAGGCCGTA+AGG | - | tig0027254:9548-9567 | Msa1433310:CDS | 60.0% | |
| CCCAGCTCTATGAGACCGGA+AGG | - | tig0027254:10241-10260 | Msa1433310:intron | 60.0% | |
| CTTGCCCTTAGAGCTCCCCT+TGG | - | tig0027254:11088-11107 | Msa1433310:intron | 60.0% | |
| GAATGGCTGTGTGGCACACC+AGG | + | tig0027254:11595-11614 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027254 | gene | 9147 | 12006 | 9147 | ID=Msa1433310;Name=Msa1433310 |
| tig0027254 | mRNA | 9147 | 12006 | 9147 | ID=Msa1433310-mRNA-1;Parent=Msa1433310;Name=Msa1433310-mRNA-1;_AED=0.30;_eAED=0.30;_QI=67|0.6|0.83|0.83|0.8|0.83|6|313|219 |
| tig0027254 | exon | 9147 | 9618 | 9147 | ID=Msa1433310-mRNA-1:exon:8592;Parent=Msa1433310-mRNA-1 |
| tig0027254 | exon | 9711 | 9806 | 9711 | ID=Msa1433310-mRNA-1:exon:8591;Parent=Msa1433310-mRNA-1 |
| tig0027254 | exon | 10033 | 10215 | 10033 | ID=Msa1433310-mRNA-1:exon:8590;Parent=Msa1433310-mRNA-1 |
| tig0027254 | exon | 10326 | 10454 | 10326 | ID=Msa1433310-mRNA-1:exon:8589;Parent=Msa1433310-mRNA-1 |
| tig0027254 | exon | 11743 | 11832 | 11743 | ID=Msa1433310-mRNA-1:exon:8588;Parent=Msa1433310-mRNA-1 |
| tig0027254 | exon | 11937 | 12006 | 11937 | ID=Msa1433310-mRNA-1:exon:8587;Parent=Msa1433310-mRNA-1 |
| tig0027254 | five_prime_UTR | 11940 | 12006 | 11940 | ID=Msa1433310-mRNA-1:five_prime_utr;Parent=Msa1433310-mRNA-1 |
| tig0027254 | CDS | 11937 | 11939 | 11937 | ID=Msa1433310-mRNA-1:cds;Parent=Msa1433310-mRNA-1 |
| tig0027254 | CDS | 11743 | 11832 | 11743 | ID=Msa1433310-mRNA-1:cds;Parent=Msa1433310-mRNA-1 |
| tig0027254 | CDS | 10326 | 10454 | 10326 | ID=Msa1433310-mRNA-1:cds;Parent=Msa1433310-mRNA-1 |
| tig0027254 | CDS | 10033 | 10215 | 10033 | ID=Msa1433310-mRNA-1:cds;Parent=Msa1433310-mRNA-1 |
| tig0027254 | CDS | 9711 | 9806 | 9711 | ID=Msa1433310-mRNA-1:cds;Parent=Msa1433310-mRNA-1 |
| tig0027254 | CDS | 9460 | 9618 | 9460 | ID=Msa1433310-mRNA-1:cds;Parent=Msa1433310-mRNA-1 |
| tig0027254 | three_prime_UTR | 9147 | 9459 | 9147 | ID=Msa1433310-mRNA-1:three_prime_utr;Parent=Msa1433310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
