AlfalfaGEDB | Msa1433310

M. sativa cultivar zhongmu-4 / Msa1433310

KEGG: K02883
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF17135.7

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433310	NP_001365649.1	84.475	219	2	1	1	219	1	187	6.70e-123	356

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433310	sp\|O65729\|RL18_CICAR	73.611	216	24	1	4	219	1	183	1.21e-106	307

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433310	B7FMF5	84.475	219	2	1	1	219	1	187	3.20e-123	356

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa1433310	0.858063	1.065259e-62	-8.615850e-47
Msa0002790	Msa1433310	0.860844	1.555851e-63	-8.615850e-47
Msa0003780	Msa1433310	0.838393	2.953967e-57	-8.615850e-47
Msa0006910	Msa1433310	0.828948	6.767523e-55	-8.615850e-47
Msa0022970	Msa1433310	0.818357	2.044372e-52	-8.615850e-47
Msa0027260	Msa1433310	0.860395	2.127621e-63	-8.615850e-47
Msa0032260	Msa1433310	0.816659	4.934563e-52	-8.615850e-47
Msa0040690	Msa1433310	0.830981	2.162083e-55	-8.615850e-47
Msa0042280	Msa1433310	0.877014	8.823053e-69	-8.615850e-47
Msa0043660	Msa1433310	0.804564	2.032918e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433310	MtrunA17_Chr7g0272381	84.475	219	2	1	1	219	1	187	6.16e-127	356
Msa1433310	MtrunA17_Chr1g0192271	73.973	219	25	1	1	219	1	187	5.26e-111	315
Msa1433310	MtrunA17_Chr7g0269451	74.091	220	24	2	1	219	1	188	1.30e-108	310

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433310	AT5G27850.1	69.863	219	34	1	1	219	1	187	2.54e-105	301
Msa1433310	AT3G05590.1	69.406	219	35	1	1	219	1	187	1.15e-104	300
Msa1433310	AT2G47570.1	64.220	218	45	2	3	219	1	186	1.41e-93	272
Msa1433310	AT3G05590.3	65.060	166	26	1	54	219	1	134	2.19e-71	214
Msa1433310	AT3G05590.2	65.060	166	26	1	54	219	1	134	2.19e-71	214
Msa1433310	AT5G27850.2	64.458	166	27	1	54	219	1	134	4.38e-70	210

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Find 90 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTAATACCCATTTAT+TGG	0.197066	tig0027254:+9280	None:intergenic
AAACACTTTGGTCGTGCTCC+TGG	0.468460	tig0027254:-9557	Msa1433310:CDS
AAAGGGAAGGAAACAAGAGA+AGG	0.607313	tig0027254:-9498	Msa1433310:CDS
AAAGTTGATCGAGTACATGA+AGG	0.551641	tig0027254:-10331	Msa1433310:CDS
AAATGGAATGGACCTTGACG+AGG	0.641410	tig0027254:+11730	None:intergenic
AACTTTGACAGAGAAATTGG+AGG	0.595797	tig0027254:+10348	None:intergenic
AAGAGAAGGCCAGAGGAAAG+AGG	0.507573	tig0027254:-9484	Msa1433310:CDS
AAGAGGCCCAAAGAATGCTA+GGG	0.636036	tig0027254:-9588	Msa1433310:CDS
AAGCCTTATGTAAGATCAAA+GGG	0.467688	tig0027254:-9515	Msa1433310:CDS
AAGTTGATCGAGTACATGAA+GGG	0.557741	tig0027254:-10330	Msa1433310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGTAGATATCATTGGATTT+AGG	+	tig0027254:9375-9394	None:intergenic	30.0%
TTGGAACTAATTGTATTCCT+TGG	+	tig0027254:9574-9593	None:intergenic	30.0%
AATTATAGTCCTAGACCTTA+CGG	+	tig0027254:9746-9765	None:intergenic	30.0%
ATAGCTTAAAACACACACTA+AGG	+	tig0027254:9990-10009	None:intergenic	30.0%
ATGCATATACTTAGTCCTAA+TGG	+	tig0027254:10121-10140	None:intergenic	30.0%
GTTGGAACTAATTATATTCC+TGG	+	tig0027254:10268-10287	None:intergenic	30.0%
GTACAATTGATTATATCCAG+AGG	+	tig0027254:10306-10325	None:intergenic	30.0%
TGGTTAAAAGTAACATCACT+GGG	+	tig0027254:10477-10496	None:intergenic	30.0%
ATGGTTAAAAGTAACATCAC+TGG	+	tig0027254:10478-10497	None:intergenic	30.0%
ATCAACTTTGACAGAGAAAT+TGG	+	tig0027254:10789-10808	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027254	gene	9147	12006	9147	ID=Msa1433310;Name=Msa1433310
tig0027254	mRNA	9147	12006	9147	ID=Msa1433310-mRNA-1;Parent=Msa1433310;Name=Msa1433310-mRNA-1;_AED=0.30;_eAED=0.30;_QI=67\|0.6\|0.83\|0.83\|0.8\|0.83\|6\|313\|219
tig0027254	exon	9147	9618	9147	ID=Msa1433310-mRNA-1:exon:8592;Parent=Msa1433310-mRNA-1
tig0027254	exon	9711	9806	9711	ID=Msa1433310-mRNA-1:exon:8591;Parent=Msa1433310-mRNA-1
tig0027254	exon	10033	10215	10033	ID=Msa1433310-mRNA-1:exon:8590;Parent=Msa1433310-mRNA-1
tig0027254	exon	10326	10454	10326	ID=Msa1433310-mRNA-1:exon:8589;Parent=Msa1433310-mRNA-1
tig0027254	exon	11743	11832	11743	ID=Msa1433310-mRNA-1:exon:8588;Parent=Msa1433310-mRNA-1
tig0027254	exon	11937	12006	11937	ID=Msa1433310-mRNA-1:exon:8587;Parent=Msa1433310-mRNA-1
tig0027254	five_prime_UTR	11940	12006	11940	ID=Msa1433310-mRNA-1:five_prime_utr;Parent=Msa1433310-mRNA-1
tig0027254	CDS	11937	11939	11937	ID=Msa1433310-mRNA-1:cds;Parent=Msa1433310-mRNA-1
tig0027254	CDS	11743	11832	11743	ID=Msa1433310-mRNA-1:cds;Parent=Msa1433310-mRNA-1
tig0027254	CDS	10326	10454	10326	ID=Msa1433310-mRNA-1:cds;Parent=Msa1433310-mRNA-1
tig0027254	CDS	10033	10215	10033	ID=Msa1433310-mRNA-1:cds;Parent=Msa1433310-mRNA-1
tig0027254	CDS	9711	9806	9711	ID=Msa1433310-mRNA-1:cds;Parent=Msa1433310-mRNA-1
tig0027254	CDS	9460	9618	9460	ID=Msa1433310-mRNA-1:cds;Parent=Msa1433310-mRNA-1
tig0027254	three_prime_UTR	9147	9459	9147	ID=Msa1433310-mRNA-1:three_prime_utr;Parent=Msa1433310-mRNA-1

Gene Sequence

>Msa1433310

ATGGGGATCGATCTCAAAGCTGGGGGTAAGAGCAAAAACACCAAACGAACCGAACCTAAATCCAATGATATCTACCTCAAGCTCCTCGTCAAGCTATATCGCTTCCTTGTTAGAAGGACTGACAGCAATTTCAATGCGGTAATACTCAAGCGCTTGTTCATGAGCAAGGTCAACCGACCTCCAATTTCTCTGTCAAAGTTGATCGAGTACATGAAGGGGAAGGACGGTAAAATTGGTGTCGTTGTGGGGGCTGTAACAGATGATATCAGGGTAAATGAAGTCCCAGTATTAAAAATTGCTGCCCTTAGGTTCACAGAGACGGCACGTGCAAGAATAGAGAAGGCGGGTGGTGAATGCCTAACATTTGATCAACTTGCCCTTAGAGCTCCCCTTGGACAGAACACGTATTGTTTTGTTATATTAGCTCTTCCTGTGAGTAGTTGTGATGGGATAGCCTTGGTTATGTTGAGCTTACCAAGTTTTGTTATATTAGCTCTTCCTGTCCTCCTAAGAGGCCCAAAGAATGCTAGGGAAGCAGTAAAACACTTTGGTCGTGCTCCTGGTGTGCCACACAGCCATTCCAAGCCTTATGTAAGATCAAAGGGAAGGAAACAAGAGAAGGCCAGAGGAAAGAGGAAGAGTAGAGGATTTAGGGTTTGA

Protein sequence

>Msa1433310

MGIDLKAGGKSKNTKRTEPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPISLSKLIEYMKGKDGKIGVVVGAVTDDIRVNEVPVLKIAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTYCFVILALPVSSCDGIALVMLSLPSFVILALPVLLRGPKNAREAVKHFGRAPGVPHSHSKPYVRSKGRKQEKARGKRKSRGFRV*