Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968350 | XP_024625178.1 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968350 | sp|Q9ZQC6|IRX9_ARATH | 59.767 | 343 | 123 | 4 | 1 | 328 | 1 | 343 | 1.08e-143 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968350 | Q599J6 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040660 | Msa0968350 | 0.854566 | 1.130496e-61 | -8.615850e-47 |
| Msa0081250 | Msa0968350 | 0.818738 | 1.675971e-52 | -8.615850e-47 |
| Msa0629600 | Msa0968350 | 0.800182 | 1.625003e-48 | -8.615850e-47 |
| Msa0642950 | Msa0968350 | 0.838324 | 3.077673e-57 | -8.615850e-47 |
| Msa0667370 | Msa0968350 | 0.807549 | 4.788223e-50 | -8.615850e-47 |
| Msa0682500 | Msa0968350 | 0.818444 | 1.954366e-52 | -8.615850e-47 |
| Msa0688820 | Msa0968350 | 0.896265 | 4.355781e-76 | -8.615850e-47 |
| Msa0173780 | Msa0968350 | 0.808522 | 2.972555e-50 | -8.615850e-47 |
| Msa0184680 | Msa0968350 | 0.870026 | 1.991198e-66 | -8.615850e-47 |
| Msa0193850 | Msa0968350 | 0.813323 | 2.712898e-51 | -8.615850e-47 |
| Msa0199960 | Msa0968350 | 0.831859 | 1.314748e-55 | -8.615850e-47 |
| Msa0389500 | Msa0968350 | 0.801045 | 1.083531e-48 | -8.615850e-47 |
| Msa0392380 | Msa0968350 | 0.856698 | 2.698410e-62 | -8.615850e-47 |
| Msa0440320 | Msa0968350 | 0.865822 | 4.468732e-65 | -8.615850e-47 |
| Msa0467770 | Msa0968350 | 0.801575 | 8.439356e-49 | -8.615850e-47 |
| Msa0475290 | Msa0968350 | 0.805838 | 1.100046e-49 | -8.615850e-47 |
| Msa0242490 | Msa0968350 | 0.842703 | 2.198629e-58 | -8.615850e-47 |
| Msa0243600 | Msa0968350 | 0.862576 | 4.596369e-64 | -8.615850e-47 |
| Msa0274440 | Msa0968350 | 0.825713 | 4.035019e-54 | -8.615850e-47 |
| Msa0280690 | Msa0968350 | 0.845628 | 3.607016e-59 | -8.615850e-47 |
| Msa0282220 | Msa0968350 | 0.859973 | 2.854174e-63 | -8.615850e-47 |
| Msa0300210 | Msa0968350 | 0.815697 | 8.095313e-52 | -8.615850e-47 |
| Msa0314170 | Msa0968350 | 0.831221 | 1.887323e-55 | -8.615850e-47 |
| Msa0319940 | Msa0968350 | 0.844230 | 8.599797e-59 | -8.615850e-47 |
| Msa0487500 | Msa0968350 | 0.871477 | 6.631437e-67 | -8.615850e-47 |
| Msa0514170 | Msa0968350 | 0.804922 | 1.712156e-49 | -8.615850e-47 |
| Msa0547110 | Msa0968350 | 0.801516 | 8.680212e-49 | -8.615850e-47 |
| Msa0601820 | Msa0968350 | 0.875070 | 4.114973e-68 | -8.615850e-47 |
| Msa0968350 | Msa1037550 | 0.865924 | 4.147193e-65 | -8.615850e-47 |
| Msa0968350 | Msa1078930 | 0.992607 | 2.578005e-194 | -8.615850e-47 |
| Msa0968350 | Msa1123930 | 0.993242 | 2.116352e-198 | -8.615850e-47 |
| Msa0968350 | Msa1130430 | 0.833553 | 4.991211e-56 | -8.615850e-47 |
| Msa0968350 | Msa1169230 | 0.956078 | 6.865911e-114 | -8.615850e-47 |
| Msa0968350 | Msa1222590 | 0.832426 | 9.517079e-56 | -8.615850e-47 |
| Msa0968350 | Msa1264570 | 0.838274 | 3.168955e-57 | -8.615850e-47 |
| Msa0968350 | Msa1340700 | 0.861737 | 8.314487e-64 | -8.615850e-47 |
| Msa0968350 | Msa1412710 | 0.819634 | 1.048008e-52 | -8.615850e-47 |
| Msa0968350 | Msa1426070 | 0.992491 | 1.300518e-193 | -8.615850e-47 |
| Msa0968350 | Msa1430750 | 0.828198 | 1.026900e-54 | -8.615850e-47 |
| Msa0968350 | Msa1436420 | 0.857179 | 1.946601e-62 | -8.615850e-47 |
| Msa0968350 | Msa1445050 | 0.807794 | 4.246983e-50 | -8.615850e-47 |
| Msa0968350 | Msa1446110 | 0.856801 | 2.515901e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968350 | MtrunA17_Chr7g0263751 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Msa0968350 | MtrunA17_Chr3g0140951 | 48.035 | 229 | 110 | 3 | 103 | 324 | 187 | 413 | 1.44e-70 | 226 |
| Msa0968350 | MtrunA17_Chr3g0140001 | 35.817 | 349 | 195 | 9 | 3 | 328 | 70 | 412 | 9.70e-65 | 211 |
| Msa0968350 | MtrunA17_Chr5g0401811 | 25.362 | 276 | 164 | 8 | 100 | 336 | 147 | 419 | 9.22e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968350 | AT2G37090.1 | 59.767 | 343 | 123 | 4 | 1 | 328 | 1 | 343 | 1.10e-144 | 412 |
| Msa0968350 | AT1G27600.2 | 40.625 | 320 | 166 | 7 | 14 | 324 | 62 | 366 | 5.91e-74 | 234 |
| Msa0968350 | AT1G27600.1 | 40.625 | 320 | 166 | 7 | 14 | 324 | 62 | 366 | 5.91e-74 | 234 |
| Msa0968350 | AT5G67230.1 | 25.000 | 272 | 160 | 8 | 95 | 324 | 143 | 412 | 3.27e-16 | 79.7 |
Find 61 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGCTTTCTTCCATAAA+TGG | 0.140314 | 6_3:-98682570 | None:intergenic |
| GAAACGCCATAGCAAGATTT+TGG | 0.205672 | 6_3:-98685502 | None:intergenic |
| TGGCAGCACATATTTGTTAA+TGG | 0.245165 | 6_3:-98682391 | None:intergenic |
| CATTCAATAGCTCCATTCTC+TGG | 0.283106 | 6_3:+98684019 | Msa0968350:CDS |
| AGTGGGATTGTTCACTTTGC+TGG | 0.287605 | 6_3:+98683120 | Msa0968350:CDS |
| TGACAATTGAGCAGGGTCTT+TGG | 0.303432 | 6_3:+98683850 | Msa0968350:intron |
| AATAATAAAGTATATAGTTT+AGG | 0.313120 | 6_3:-98682422 | None:intergenic |
| ACTACTATACATCATATGTT+AGG | 0.313282 | 6_3:+98685567 | Msa0968350:three_prime_UTR |
| ACAAAAGCTAATATTTAGTT+TGG | 0.322846 | 6_3:+98682333 | Msa0968350:five_prime_UTR |
| CAGTGAAGAGTTCATGGACT+TGG | 0.355535 | 6_3:+98683038 | Msa0968350:CDS |
| TGTGACTCTTCTCAAGTCAT+TGG | 0.366016 | 6_3:+98683934 | Msa0968350:CDS |
| CTCTGGCAATTCAGTTGATT+CGG | 0.377196 | 6_3:-98682974 | None:intergenic |
| TTGGAGGTATTTCATATGTA+AGG | 0.398590 | 6_3:-98682310 | None:intergenic |
| CATTGCTTTCTTCCATAAAT+GGG | 0.399629 | 6_3:-98682569 | None:intergenic |
| CCAGAGATATTGAGGAAAAC+TGG | 0.401504 | 6_3:+98682991 | Msa0968350:CDS |
| GAATAAAATTGAGTAATTGT+TGG | 0.406917 | 6_3:-98682470 | None:intergenic |
| TGGCTATGGATTCTAGGTGC+TGG | 0.412979 | 6_3:-98682763 | None:intergenic |
| TTAGGCTTCAATTGAGGTAG+TGG | 0.414050 | 6_3:-98682823 | None:intergenic |
| TTCACAGGTTTAGCTCCAAC+AGG | 0.416327 | 6_3:+98682625 | Msa0968350:CDS |
| TTCTCTGGGACCCTGAGAGA+TGG | 0.425575 | 6_3:+98684034 | Msa0968350:CDS |
| GAAGTTCGACCCCATCTCTC+AGG | 0.437016 | 6_3:-98684045 | None:intergenic |
| TCTCTGGGACCCTGAGAGAT+GGG | 0.437280 | 6_3:+98684035 | Msa0968350:CDS |
| CTACTATACATCATATGTTA+GGG | 0.437935 | 6_3:+98685568 | Msa0968350:three_prime_UTR |
| GGGTCGAACTTCATCAGTTA+AGG | 0.438041 | 6_3:+98684056 | Msa0968350:CDS |
| AATATTAAAGATTTACCTGT+TGG | 0.438372 | 6_3:-98682640 | None:intergenic |
| ATCAGTTAAGGATACTTCTC+AGG | 0.448819 | 6_3:+98684068 | Msa0968350:CDS |
| GGAAAACTGGTATCATGTAT+AGG | 0.455162 | 6_3:+98683004 | Msa0968350:CDS |
| TGAAATGTTGAGGTTATGAT+TGG | 0.461969 | 6_3:-98682361 | None:intergenic |
| TTGTTGATCAACCATTGCTT+TGG | 0.462201 | 6_3:+98682932 | Msa0968350:CDS |
| TAGAAACTAGTGCTTGGAAA+TGG | 0.464267 | 6_3:-98685544 | None:intergenic |
| TCTCTCAGGGTCCCAGAGAA+TGG | 0.466645 | 6_3:-98684031 | None:intergenic |
| CTGAATTGCCAGAGATATTG+AGG | 0.474651 | 6_3:+98682983 | Msa0968350:CDS |
| AGAAGATGGGTTCAGTAGAA+AGG | 0.478029 | 6_3:+98682533 | Msa0968350:exon |
| TGCAAAACTTGAAATATGAA+TGG | 0.482368 | 6_3:-98683998 | None:intergenic |
| AGAAGATGAGGCTAAGTTGA+AGG | 0.485965 | 6_3:+98685461 | Msa0968350:CDS |
| GCAAAACTTGAAATATGAAT+GGG | 0.488014 | 6_3:-98683997 | None:intergenic |
| ATATAGTTTAGGTGCATTTG+TGG | 0.488627 | 6_3:-98682411 | None:intergenic |
| ACTCAATATCTCTAAGCTGT+TGG | 0.489245 | 6_3:-98683173 | None:intergenic |
| ACTTGAGAAGAGTCACAAAC+TGG | 0.500366 | 6_3:-98683928 | None:intergenic |
| TGGAAACGTTTGAAATGTTG+AGG | 0.501044 | 6_3:-98682371 | None:intergenic |
| TATGAAAGCAACTCTTGTAC+TGG | 0.507724 | 6_3:-98685635 | None:intergenic |
| GAAGATCATAAACATTAGAA+AGG | 0.518111 | 6_3:-98683143 | None:intergenic |
| GTTGACATTTGAGAAGGTTG+TGG | 0.518182 | 6_3:-98682712 | None:intergenic |
| TTGGAACAGAATGAAGAGAA+GGG | 0.523187 | 6_3:-98682451 | None:intergenic |
| ATTCAATAGCTCCATTCTCT+GGG | 0.531877 | 6_3:+98684020 | Msa0968350:CDS |
| GTTGGAACAGAATGAAGAGA+AGG | 0.540184 | 6_3:-98682452 | None:intergenic |
| ATTGAGCATCATAGACTAAG+TGG | 0.544865 | 6_3:+98683102 | Msa0968350:CDS |
| AGTAGTTAGAAACTAGTGCT+TGG | 0.546140 | 6_3:-98685550 | None:intergenic |
| TTTGCAAGTAATAATGCCGT+TGG | 0.557119 | 6_3:-98683880 | None:intergenic |
| TGAGCAGGGTCTTTGGAACA+TGG | 0.563420 | 6_3:+98683857 | Msa0968350:intron |
| GCAAGTAGTTCTAGAAGATG+AGG | 0.569238 | 6_3:+98685449 | Msa0968350:CDS |
| ACTCTTCTCAAGTCATTGGA+TGG | 0.578421 | 6_3:+98683938 | Msa0968350:CDS |
| ACTGCTCCAAAATCTTGCTA+TGG | 0.580047 | 6_3:+98685496 | Msa0968350:CDS |
| GAAGATGAGGCTAAGTTGAA+GGG | 0.584310 | 6_3:+98685462 | Msa0968350:CDS |
| AAGTTCGACCCCATCTCTCA+GGG | 0.598644 | 6_3:-98684044 | None:intergenic |
| CTCTGGGACCCTGAGAGATG+GGG | 0.602550 | 6_3:+98684036 | Msa0968350:CDS |
| TCGACAACAATCCAAAGCAA+TGG | 0.628366 | 6_3:-98682943 | None:intergenic |
| TTGAGCATCATAGACTAAGT+GGG | 0.628829 | 6_3:+98683103 | Msa0968350:CDS |
| GGTCTTTGGAACATGGCCAA+CGG | 0.646193 | 6_3:+98683864 | Msa0968350:CDS |
| TACTATACATCATATGTTAG+GGG | 0.651812 | 6_3:+98685569 | Msa0968350:three_prime_UTR |
| TATACGGAAGACAATTACAA+AGG | 0.665200 | 6_3:-98685690 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAAGTATATAGTTT+AGG | - | chr6_3:98682425-98682444 | None:intergenic | 10.0% |
| !! | ACACTTAAAAAAAATTATAT+TGG | + | chr6_3:98683690-98683709 | Msa0968350:intron | 10.0% |
| !! | ATAAAAATAAAAATAAGTCA+AGG | - | chr6_3:98684206-98684225 | None:intergenic | 10.0% |
| !! | AATAAAAATGTTAAATAGTT+TGG | + | chr6_3:98684882-98684901 | Msa0968350:intron | 10.0% |
| !!! | CAAATAGTTTTTTTTTTTAA+TGG | + | chr6_3:98684928-98684947 | Msa0968350:intron | 10.0% |
| !! | ACACAAATAAAAAATATATA+CGG | - | chr6_3:98685709-98685728 | None:intergenic | 10.0% |
| !!! | TGATTATTTTTTTAACAAAA+AGG | + | chr6_3:98685794-98685813 | Msa0968350:three_prime_UTR | 10.0% |
| !! | AAAAATTTACCAAAAAATTC+AGG | - | chr6_3:98682504-98682523 | None:intergenic | 15.0% |
| !!! | AATAAACAACTTTTTTCAAT+TGG | + | chr6_3:98683361-98683380 | Msa0968350:intron | 15.0% |
| !! | ATATCAAAAACCAAATTTAT+TGG | - | chr6_3:98683493-98683512 | None:intergenic | 15.0% |
| !!! | TTTAATCTTCACAATATTTT+CGG | - | chr6_3:98684246-98684265 | None:intergenic | 15.0% |
| !! | AAAAATTGTCAAGTTTATAA+CGG | + | chr6_3:98684704-98684723 | Msa0968350:intron | 15.0% |
| !!! | ACTAAATATTAGCTTTTGTT+TGG | - | chr6_3:98682332-98682351 | None:intergenic | 20.0% |
| !! | ACAAAAGCTAATATTTAGTT+TGG | + | chr6_3:98682333-98682352 | Msa0968350:five_prime_UTR | 20.0% |
| !! | GAATAAAATTGAGTAATTGT+TGG | - | chr6_3:98682473-98682492 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTATGTTTTGTGA+TGG | + | chr6_3:98682597-98682616 | Msa0968350:CDS | 20.0% |
| !!! | TTTTCTTTATGTTTTGTGAT+GGG | + | chr6_3:98682598-98682617 | Msa0968350:CDS | 20.0% |
| !! | AATATTAAAGATTTACCTGT+TGG | - | chr6_3:98682643-98682662 | None:intergenic | 20.0% |
| !!! | CTCAAAAAAACATTTTGATA+AGG | - | chr6_3:98682889-98682908 | None:intergenic | 20.0% |
| !!! | AAATGTTTTTTTGAGAAGAT+TGG | + | chr6_3:98682894-98682913 | Msa0968350:CDS | 20.0% |
| !!! | AATTAGTTTAGCAAATAGAA+GGG | - | chr6_3:98683211-98683230 | None:intergenic | 20.0% |
| !!! | AAATTAGTTTAGCAAATAGA+AGG | - | chr6_3:98683212-98683231 | None:intergenic | 20.0% |
| !!! | TGTTAATTTGTTATGTCTAA+TGG | + | chr6_3:98683262-98683281 | Msa0968350:intron | 20.0% |
| !! | TTAAAAAAAATGTAGCTAGT+AGG | + | chr6_3:98683325-98683344 | Msa0968350:intron | 20.0% |
| !! | AGTGTAGATATTTAACAATT+TGG | - | chr6_3:98683675-98683694 | None:intergenic | 20.0% |
| !! | AATGTTATAATTACACATCA+TGG | + | chr6_3:98684093-98684112 | Msa0968350:intron | 20.0% |
| !! | ACAGTTAAATATATGAGTAA+TGG | - | chr6_3:98684654-98684673 | None:intergenic | 20.0% |
| !! | AAAATTGTCAAGTTTATAAC+GGG | + | chr6_3:98684705-98684724 | Msa0968350:intron | 20.0% |
| !!! | AAGCAATTTATTTGAGTTTA+GGG | - | chr6_3:98684753-98684772 | None:intergenic | 20.0% |
| !! | TCAAATACACTTATAAAGTT+AGG | + | chr6_3:98684772-98684791 | Msa0968350:intron | 20.0% |
| !! | AAAATGTTAAATAGTTTGGT+TGG | + | chr6_3:98684886-98684905 | Msa0968350:intron | 20.0% |
| !!! | TTTTTCCTTTTTAAAGTAGT+TGG | - | chr6_3:98685065-98685084 | None:intergenic | 20.0% |
| !!! | AATTGAGATATATCTAAAGT+AGG | - | chr6_3:98685248-98685267 | None:intergenic | 20.0% |
| !!! | AAATATTAGCTTTTGTTTGG+AGG | - | chr6_3:98682329-98682348 | None:intergenic | 25.0% |
| ! | ATTTACCAAAAAATTCAGGT+TGG | - | chr6_3:98682500-98682519 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTTCTTTAGAAGA+TGG | + | chr6_3:98682519-98682538 | Msa0968350:exon | 25.0% |
| !!! | TTTTTGCTTCTTTAGAAGAT+GGG | + | chr6_3:98682520-98682539 | Msa0968350:exon | 25.0% |
| ! | CAAAGAAAAAAACCCATTTA+TGG | + | chr6_3:98682557-98682576 | Msa0968350:CDS | 25.0% |
| !!! | TTTTTTGTTGACATTTGAGA+AGG | - | chr6_3:98682721-98682740 | None:intergenic | 25.0% |
| ! | TCTCAAATGTCAACAAAAAA+TGG | + | chr6_3:98682721-98682740 | Msa0968350:CDS | 25.0% |
| ! | CAAAAAATGGTAACAAAAGT+TGG | + | chr6_3:98682734-98682753 | Msa0968350:CDS | 25.0% |
| !! | ACTATGATTAGAAGTCTTTT+AGG | - | chr6_3:98682844-98682863 | None:intergenic | 25.0% |
| ! | GAAGATCATAAACATTAGAA+AGG | - | chr6_3:98683146-98683165 | None:intergenic | 25.0% |
| !! | ATTAGTTTAGCAAATAGAAG+GGG | - | chr6_3:98683210-98683229 | None:intergenic | 25.0% |
| ! | CTACTAGCTACATTAAAATT+AGG | - | chr6_3:98683301-98683320 | None:intergenic | 25.0% |
| !!! | CTAATTTTAATGTAGCTAGT+AGG | + | chr6_3:98683299-98683318 | Msa0968350:intron | 25.0% |
| !!! | AACAACTTTTTTCAATTGGA+TGG | + | chr6_3:98683365-98683384 | Msa0968350:intron | 25.0% |
| !! | TTTTCAATTGGATGGAAAAA+AGG | + | chr6_3:98683373-98683392 | Msa0968350:intron | 25.0% |
| ! | TTTAGTGACACCAATAAATT+TGG | + | chr6_3:98683480-98683499 | Msa0968350:intron | 25.0% |
| !! | AATCATTCTAAAAACATCTC+AGG | + | chr6_3:98683561-98683580 | Msa0968350:intron | 25.0% |
| !!! | ATCACTTTAGTCTTTTTGAA+TGG | - | chr6_3:98683597-98683616 | None:intergenic | 25.0% |
| !! | TTTTTCTTTTCAAATCACCT+AGG | - | chr6_3:98683790-98683809 | None:intergenic | 25.0% |
| ! | AGAAAAAGAGTGATAATTGA+AGG | + | chr6_3:98683904-98683923 | Msa0968350:CDS | 25.0% |
| ! | GCAAAACTTGAAATATGAAT+GGG | - | chr6_3:98684000-98684019 | None:intergenic | 25.0% |
| ! | TGCAAAACTTGAAATATGAA+TGG | - | chr6_3:98684001-98684020 | None:intergenic | 25.0% |
| ! | TATCAAAACCAAACTTCAAT+TGG | + | chr6_3:98684139-98684158 | Msa0968350:intron | 25.0% |
| ! | AACATATACCAATTGAAGTT+TGG | - | chr6_3:98684150-98684169 | None:intergenic | 25.0% |
| ! | ATTTGAAGAAAAGTTGTATG+CGG | + | chr6_3:98684266-98684285 | Msa0968350:intron | 25.0% |
| ! | TTGCTTCAATAATAAAACTC+TGG | + | chr6_3:98684422-98684441 | Msa0968350:intron | 25.0% |
| ! | TGCTTCAATAATAAAACTCT+GGG | + | chr6_3:98684423-98684442 | Msa0968350:intron | 25.0% |
| !!! | TTCGCTTTTTTCAAATTTTG+AGG | - | chr6_3:98684488-98684507 | None:intergenic | 25.0% |
| ! | GTAAATTCCTATTTGTCTAT+GGG | + | chr6_3:98684611-98684630 | Msa0968350:intron | 25.0% |
| ! | TATGAGTAATGGCTTAAATA+GGG | - | chr6_3:98684643-98684662 | None:intergenic | 25.0% |
| ! | ATATGAGTAATGGCTTAAAT+AGG | - | chr6_3:98684644-98684663 | None:intergenic | 25.0% |
| ! | AAATTGTCAAGTTTATAACG+GGG | + | chr6_3:98684706-98684725 | Msa0968350:intron | 25.0% |
| !! | GAAGCAATTTATTTGAGTTT+AGG | - | chr6_3:98684754-98684773 | None:intergenic | 25.0% |
| ! | ATACACTTATAAAGTTAGGT+TGG | + | chr6_3:98684776-98684795 | Msa0968350:intron | 25.0% |
| ! | TTTGGTTGGATATATCTATT+TGG | + | chr6_3:98684900-98684919 | Msa0968350:intron | 25.0% |
| ! | AATAAAATTTCAAGCAGTGA+AGG | - | chr6_3:98685012-98685031 | None:intergenic | 25.0% |
| ! | TACGCAAGAATAAAAAAACT+AGG | + | chr6_3:98685088-98685107 | Msa0968350:intron | 25.0% |
| ! | ACTACTATACATCATATGTT+AGG | + | chr6_3:98685567-98685586 | Msa0968350:three_prime_UTR | 25.0% |
| ! | CTACTATACATCATATGTTA+GGG | + | chr6_3:98685568-98685587 | Msa0968350:three_prime_UTR | 25.0% |
| ! | TACTATACATCATATGTTAG+GGG | + | chr6_3:98685569-98685588 | Msa0968350:three_prime_UTR | 25.0% |
| !!! | ATTTTGTTAGCTTACGTAAA+AGG | + | chr6_3:98685735-98685754 | Msa0968350:three_prime_UTR | 25.0% |
| !! | TTGGAGGTATTTCATATGTA+AGG | - | chr6_3:98682313-98682332 | None:intergenic | 30.0% |
| TGAAATGTTGAGGTTATGAT+TGG | - | chr6_3:98682364-98682383 | None:intergenic | 30.0% | |
| ATATAGTTTAGGTGCATTTG+TGG | - | chr6_3:98682414-98682433 | None:intergenic | 30.0% | |
| CATTGCTTTCTTCCATAAAT+GGG | - | chr6_3:98682572-98682591 | None:intergenic | 30.0% | |
| AAAAAAATGTAGCTAGTAGG+TGG | + | chr6_3:98683328-98683347 | Msa0968350:intron | 30.0% | |
| AGGCTAGTAAGAAAATCTTT+AGG | + | chr6_3:98683393-98683412 | Msa0968350:intron | 30.0% | |
| TAATCATCATCACTAGTGTT+AGG | - | chr6_3:98683423-98683442 | None:intergenic | 30.0% | |
| AGTGTGAAATAAAATCACCT+AGG | - | chr6_3:98683766-98683785 | None:intergenic | 30.0% | |
| !! | GATTTTATTTCACACTTCCT+AGG | + | chr6_3:98683770-98683789 | Msa0968350:intron | 30.0% |
| TATTCATTTGACAATTGAGC+AGG | + | chr6_3:98683842-98683861 | Msa0968350:intron | 30.0% | |
| ATTCATTTGACAATTGAGCA+GGG | + | chr6_3:98683843-98683862 | Msa0968350:intron | 30.0% | |
| GCTTCAATAATAAAACTCTG+GGG | + | chr6_3:98684424-98684443 | Msa0968350:intron | 30.0% | |
| CGAAAAAAAACTTGTACCTA+CGG | + | chr6_3:98684504-98684523 | Msa0968350:intron | 30.0% | |
| !! | AGATATTTAGTGACGGATTT+CGG | - | chr6_3:98684530-98684549 | None:intergenic | 30.0% |
| CGGAAATAGATATTTAGTGA+CGG | - | chr6_3:98684537-98684556 | None:intergenic | 30.0% | |
| CACTAAATATCTATTTCCGT+AGG | + | chr6_3:98684538-98684557 | Msa0968350:intron | 30.0% | |
| GTCAATTATGCATTATCCAT+AGG | + | chr6_3:98684589-98684608 | Msa0968350:intron | 30.0% | |
| GACAAATAGGAATTTACCTA+TGG | - | chr6_3:98684608-98684627 | None:intergenic | 30.0% | |
| GGTAAATTCCTATTTGTCTA+TGG | + | chr6_3:98684610-98684629 | Msa0968350:intron | 30.0% | |
| !!! | CTTTTTAAAGTAGTTGGATG+AGG | - | chr6_3:98685059-98685078 | None:intergenic | 30.0% |
| ! | CTCATCCAACTACTTTAAAA+AGG | + | chr6_3:98685057-98685076 | Msa0968350:intron | 30.0% |
| ! | ATGACATGTGATAATGCATT+TGG | + | chr6_3:98685199-98685218 | Msa0968350:intron | 30.0% |
| ! | ATCTAAAGTAGGTTCTATCT+TGG | - | chr6_3:98685237-98685256 | None:intergenic | 30.0% |
| AAAATAGCAACAAAGCTCTT+AGG | - | chr6_3:98685371-98685390 | None:intergenic | 30.0% | |
| !!! | TGCTATTTTGTCCTAATTTG+AGG | + | chr6_3:98685382-98685401 | Msa0968350:intron | 30.0% |
| AAAAGAAGTAGCCTCAAATT+AGG | - | chr6_3:98685396-98685415 | None:intergenic | 30.0% | |
| TATACGGAAGACAATTACAA+AGG | - | chr6_3:98685693-98685712 | None:intergenic | 30.0% | |
| ! | CTTCAAATGTTTTGCTTCAT+AGG | - | chr6_3:98685768-98685787 | None:intergenic | 30.0% |
| ! | TGGAAACGTTTGAAATGTTG+AGG | - | chr6_3:98682374-98682393 | None:intergenic | 35.0% |
| ! | TGGCAGCACATATTTGTTAA+TGG | - | chr6_3:98682394-98682413 | None:intergenic | 35.0% |
| TTGGAACAGAATGAAGAGAA+GGG | - | chr6_3:98682454-98682473 | None:intergenic | 35.0% | |
| !! | CCAAAAAATTCAGGTTGGAA+TGG | - | chr6_3:98682495-98682514 | None:intergenic | 35.0% |
| !!! | CCATTCCAACCTGAATTTTT+TGG | + | chr6_3:98682492-98682511 | Msa0968350:five_prime_UTR | 35.0% |
| GCATTGCTTTCTTCCATAAA+TGG | - | chr6_3:98682573-98682592 | None:intergenic | 35.0% | |
| !!! | TTTGTGATGGGTTTTTTCAC+AGG | + | chr6_3:98682610-98682629 | Msa0968350:CDS | 35.0% |
| !!! | GTTTTTTGGCTATGGATTCT+AGG | - | chr6_3:98682772-98682791 | None:intergenic | 35.0% |
| !!! | TTGTTGCTGCTGTTGTTTTT+TGG | - | chr6_3:98682786-98682805 | None:intergenic | 35.0% |
| ! | AGTCTTTTAGGCTTCAATTG+AGG | - | chr6_3:98682832-98682851 | None:intergenic | 35.0% |
| !!! | TAAGGTAGTTTTGTGCTTGT+TGG | - | chr6_3:98682871-98682890 | None:intergenic | 35.0% |
| TTGTTGATCAACCATTGCTT+TGG | + | chr6_3:98682932-98682951 | Msa0968350:CDS | 35.0% | |
| GGAAAACTGGTATCATGTAT+AGG | + | chr6_3:98683004-98683023 | Msa0968350:CDS | 35.0% | |
| ! | TGTTTTCAGTGAAGAGTTCA+TGG | + | chr6_3:98683032-98683051 | Msa0968350:CDS | 35.0% |
| ATTGAGCATCATAGACTAAG+TGG | + | chr6_3:98683102-98683121 | Msa0968350:CDS | 35.0% | |
| TTGAGCATCATAGACTAAGT+GGG | + | chr6_3:98683103-98683122 | Msa0968350:CDS | 35.0% | |
| ACTCAATATCTCTAAGCTGT+TGG | - | chr6_3:98683176-98683195 | None:intergenic | 35.0% | |
| !! | TTGGTGTCACTAAAATTCGA+GGG | - | chr6_3:98683474-98683493 | None:intergenic | 35.0% |
| !! | ATTGGTGTCACTAAAATTCG+AGG | - | chr6_3:98683475-98683494 | None:intergenic | 35.0% |
| CATGATATTTCACACTTCCT+AGG | + | chr6_3:98683746-98683765 | Msa0968350:intron | 35.0% | |
| TTTGCAAGTAATAATGCCGT+TGG | - | chr6_3:98683883-98683902 | None:intergenic | 35.0% | |
| ATTCAATAGCTCCATTCTCT+GGG | + | chr6_3:98684020-98684039 | Msa0968350:CDS | 35.0% | |
| ATCAGTTAAGGATACTTCTC+AGG | + | chr6_3:98684068-98684087 | Msa0968350:CDS | 35.0% | |
| TCTATCATTTACGCTCTGAT+AGG | + | chr6_3:98684388-98684407 | Msa0968350:intron | 35.0% | |
| ! | TCAATAATAAAACTCTGGGG+AGG | + | chr6_3:98684427-98684446 | Msa0968350:intron | 35.0% |
| ! | GTCTTTCAGACTTTTACCTA+CGG | - | chr6_3:98684557-98684576 | None:intergenic | 35.0% |
| TCCTATTTGTCTATGGGTAA+AGG | + | chr6_3:98684617-98684636 | Msa0968350:intron | 35.0% | |
| !! | AGTTAGGTTGGATATCTTGT+TGG | + | chr6_3:98684788-98684807 | Msa0968350:intron | 35.0% |
| TAAAGTAGTTGGATGAGGTT+GGG | - | chr6_3:98685054-98685073 | None:intergenic | 35.0% | |
| TTAAAGTAGTTGGATGAGGT+TGG | - | chr6_3:98685055-98685074 | None:intergenic | 35.0% | |
| CACATGTCATAGACATTATG+CGG | - | chr6_3:98685189-98685208 | None:intergenic | 35.0% | |
| AGGTTCTATCTTGGAGTAAA+AGG | - | chr6_3:98685228-98685247 | None:intergenic | 35.0% | |
| !! | TTGTCACTTTGCATTTCATG+TGG | - | chr6_3:98685283-98685302 | None:intergenic | 35.0% |
| !! | ATTTGAGGCTACTTCTTTTG+TGG | + | chr6_3:98685397-98685416 | Msa0968350:intron | 35.0% |
| CACAAACTTGATTGAGTTCT+AGG | - | chr6_3:98685427-98685446 | None:intergenic | 35.0% | |
| TAGAAACTAGTGCTTGGAAA+TGG | - | chr6_3:98685547-98685566 | None:intergenic | 35.0% | |
| AGTAGTTAGAAACTAGTGCT+TGG | - | chr6_3:98685553-98685572 | None:intergenic | 35.0% | |
| TATGAAAGCAACTCTTGTAC+TGG | - | chr6_3:98685638-98685657 | None:intergenic | 35.0% | |
| GTTGGAACAGAATGAAGAGA+AGG | - | chr6_3:98682455-98682474 | None:intergenic | 40.0% | |
| ! | AGAAGATGGGTTCAGTAGAA+AGG | + | chr6_3:98682533-98682552 | Msa0968350:exon | 40.0% |
| GTTGACATTTGAGAAGGTTG+TGG | - | chr6_3:98682715-98682734 | None:intergenic | 40.0% | |
| !!! | CTGCTGTTGTTTTTTGGCTA+TGG | - | chr6_3:98682780-98682799 | None:intergenic | 40.0% |
| TTAGGCTTCAATTGAGGTAG+TGG | - | chr6_3:98682826-98682845 | None:intergenic | 40.0% | |
| TCGACAACAATCCAAAGCAA+TGG | - | chr6_3:98682946-98682965 | None:intergenic | 40.0% | |
| CTCTGGCAATTCAGTTGATT+CGG | - | chr6_3:98682977-98682996 | None:intergenic | 40.0% | |
| CTGAATTGCCAGAGATATTG+AGG | + | chr6_3:98682983-98683002 | Msa0968350:CDS | 40.0% | |
| ! | CCAGTTTTCCTCAATATCTC+TGG | - | chr6_3:98682994-98683013 | None:intergenic | 40.0% |
| CCAGAGATATTGAGGAAAAC+TGG | + | chr6_3:98682991-98683010 | Msa0968350:CDS | 40.0% | |
| AGCAAATAGAAGGGGTAGAA+AGG | - | chr6_3:98683202-98683221 | None:intergenic | 40.0% | |
| ACTTGAGAAGAGTCACAAAC+TGG | - | chr6_3:98683931-98683950 | None:intergenic | 40.0% | |
| TGTGACTCTTCTCAAGTCAT+TGG | + | chr6_3:98683934-98683953 | Msa0968350:CDS | 40.0% | |
| ACTCTTCTCAAGTCATTGGA+TGG | + | chr6_3:98683938-98683957 | Msa0968350:CDS | 40.0% | |
| CATTCAATAGCTCCATTCTC+TGG | + | chr6_3:98684019-98684038 | Msa0968350:CDS | 40.0% | |
| GCCTTTACCCATAGACAAAT+AGG | - | chr6_3:98684621-98684640 | None:intergenic | 40.0% | |
| AAAGCTCTTAGGTAGAGTAG+AGG | - | chr6_3:98685360-98685379 | None:intergenic | 40.0% | |
| !! | GCAAGTAGTTCTAGAAGATG+AGG | + | chr6_3:98685449-98685468 | Msa0968350:CDS | 40.0% |
| ! | AGAAGATGAGGCTAAGTTGA+AGG | + | chr6_3:98685461-98685480 | Msa0968350:CDS | 40.0% |
| ! | GAAGATGAGGCTAAGTTGAA+GGG | + | chr6_3:98685462-98685481 | Msa0968350:CDS | 40.0% |
| !!! | AGCAAGATTTTGGAGCAGTA+CGG | - | chr6_3:98685495-98685514 | None:intergenic | 40.0% |
| ACTGCTCCAAAATCTTGCTA+TGG | + | chr6_3:98685496-98685515 | Msa0968350:CDS | 40.0% | |
| ! | GAAACGCCATAGCAAGATTT+TGG | - | chr6_3:98685505-98685524 | None:intergenic | 40.0% |
| ! | TTCACAGGTTTAGCTCCAAC+AGG | + | chr6_3:98682625-98682644 | Msa0968350:CDS | 45.0% |
| CAGTGAAGAGTTCATGGACT+TGG | + | chr6_3:98683038-98683057 | Msa0968350:CDS | 45.0% | |
| AGTGGGATTGTTCACTTTGC+TGG | + | chr6_3:98683120-98683139 | Msa0968350:CDS | 45.0% | |
| TGACAATTGAGCAGGGTCTT+TGG | + | chr6_3:98683850-98683869 | Msa0968350:intron | 45.0% | |
| GGGTCGAACTTCATCAGTTA+AGG | + | chr6_3:98684056-98684075 | Msa0968350:CDS | 45.0% | |
| !!! | AAGATTTTGGAGCAGTACGG+TGG | - | chr6_3:98685492-98685511 | None:intergenic | 45.0% |
| !!! | TTAATTTTTTTTTTTTTTGA+AGG | + | chr6_3:98684829-98684848 | Msa0968350:intron | 5.0% |
| TGGCTATGGATTCTAGGTGC+TGG | - | chr6_3:98682766-98682785 | None:intergenic | 50.0% | |
| !! | TGAGCAGGGTCTTTGGAACA+TGG | + | chr6_3:98683857-98683876 | Msa0968350:intron | 50.0% |
| !! | GGTCTTTGGAACATGGCCAA+CGG | + | chr6_3:98683864-98683883 | Msa0968350:CDS | 50.0% |
| AAGTTCGACCCCATCTCTCA+GGG | - | chr6_3:98684047-98684066 | None:intergenic | 50.0% | |
| TCTCTCAGGGTCCCAGAGAA+TGG | - | chr6_3:98684034-98684053 | None:intergenic | 55.0% | |
| !! | TTCTCTGGGACCCTGAGAGA+TGG | + | chr6_3:98684034-98684053 | Msa0968350:CDS | 55.0% |
| !! | TCTCTGGGACCCTGAGAGAT+GGG | + | chr6_3:98684035-98684054 | Msa0968350:CDS | 55.0% |
| GAAGTTCGACCCCATCTCTC+AGG | - | chr6_3:98684048-98684067 | None:intergenic | 55.0% | |
| GGCCTTGATGCACTTGCACA+GGG | - | chr6_3:98684453-98684472 | None:intergenic | 55.0% | |
| TGCAAGTGCATCAAGGCCCT+TGG | + | chr6_3:98684455-98684474 | Msa0968350:intron | 55.0% | |
| !!! | ATTTTGAGGCCCCGTGCCAA+GGG | - | chr6_3:98684474-98684493 | None:intergenic | 55.0% |
| !!! | AATTTTGAGGCCCCGTGCCA+AGG | - | chr6_3:98684475-98684494 | None:intergenic | 55.0% |
| !! | TAGTGACGGATTTCGGCCGT+AGG | - | chr6_3:98684523-98684542 | None:intergenic | 55.0% |
| TAACGGGGCCTCCGAATTGT+CGG | + | chr6_3:98684721-98684740 | Msa0968350:intron | 55.0% | |
| !! | CTCTGGGACCCTGAGAGATG+GGG | + | chr6_3:98684036-98684055 | Msa0968350:CDS | 60.0% |
| GGCCCTGTGCAAGTGCATCA+AGG | + | chr6_3:98684448-98684467 | Msa0968350:intron | 60.0% | |
| GGGCCTTGATGCACTTGCAC+AGG | - | chr6_3:98684454-98684473 | None:intergenic | 60.0% | |
| GTGCATCAAGGCCCTTGGCA+CGG | + | chr6_3:98684460-98684479 | Msa0968350:intron | 60.0% | |
| TGCATCAAGGCCCTTGGCAC+GGG | + | chr6_3:98684461-98684480 | Msa0968350:intron | 60.0% | |
| AACGGGGCCTCCGAATTGTC+GGG | + | chr6_3:98684722-98684741 | Msa0968350:intron | 60.0% | |
| TAGGGCCGTCCCCGACAATT+CGG | - | chr6_3:98684735-98684754 | None:intergenic | 60.0% | |
| GCATCAAGGCCCTTGGCACG+GGG | + | chr6_3:98684462-98684481 | Msa0968350:intron | 65.0% | |
| ACGGGGCCTCCGAATTGTCG+GGG | + | chr6_3:98684723-98684742 | Msa0968350:intron | 65.0% | |
| GGCCTCCGAATTGTCGGGGA+CGG | + | chr6_3:98684727-98684746 | Msa0968350:intron | 65.0% | |
| GGCCGTCCCCGACAATTCGG+AGG | - | chr6_3:98684732-98684751 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 98682299 | 98685832 | 98682299 | ID=Msa0968350;Name=Msa0968350 |
| chr6_3 | mRNA | 98682299 | 98685832 | 98682299 | ID=Msa0968350-mRNA-1;Parent=Msa0968350;Name=Msa0968350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=239|1|1|1|1|1|3|272|337 |
| chr6_3 | exon | 98682299 | 98683193 | 98682299 | ID=Msa0968350-mRNA-1:exon:18561;Parent=Msa0968350-mRNA-1 |
| chr6_3 | exon | 98683864 | 98684089 | 98683864 | ID=Msa0968350-mRNA-1:exon:18562;Parent=Msa0968350-mRNA-1 |
| chr6_3 | exon | 98685429 | 98685832 | 98685429 | ID=Msa0968350-mRNA-1:exon:18563;Parent=Msa0968350-mRNA-1 |
| chr6_3 | five_prime_UTR | 98682299 | 98682537 | 98682299 | ID=Msa0968350-mRNA-1:five_prime_utr;Parent=Msa0968350-mRNA-1 |
| chr6_3 | CDS | 98682538 | 98683193 | 98682538 | ID=Msa0968350-mRNA-1:cds;Parent=Msa0968350-mRNA-1 |
| chr6_3 | CDS | 98683864 | 98684089 | 98683864 | ID=Msa0968350-mRNA-1:cds;Parent=Msa0968350-mRNA-1 |
| chr6_3 | CDS | 98685429 | 98685560 | 98685429 | ID=Msa0968350-mRNA-1:cds;Parent=Msa0968350-mRNA-1 |
| chr6_3 | three_prime_UTR | 98685561 | 98685832 | 98685561 | ID=Msa0968350-mRNA-1:three_prime_utr;Parent=Msa0968350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
