AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369320 MtrunA17_Chr1g0191601 94.920 374 17 2 1 373 1 373 0.0 690
Msa1369320 MtrunA17_Chr7g0273051 63.897 349 105 9 32 373 27 361 1.75e-149 426
Msa1369320 MtrunA17_Chr3g0132491 42.679 321 164 8 47 357 58 368 2.22e-70 225
Msa1369320 MtrunA17_Chr5g0426881 38.788 330 186 6 43 368 59 376 3.16e-59 196
Msa1369320 MtrunA17_Chr5g0426871 43.463 283 139 7 47 309 53 334 7.84e-59 195
Msa1369320 MtrunA17_Chr6g0470751 35.714 280 171 4 1 280 6 276 2.19e-47 163
Msa1369320 MtrunA17_Chr3g0123641 36.574 216 114 7 48 262 1 194 2.33e-36 132
Msa1369320 MtrunA17_Chr3g0123631 32.877 219 116 4 48 266 1 188 1.78e-35 128
Msa1369320 MtrunA17_Chr5g0433861 36.207 232 126 8 53 272 39 260 1.22e-29 116
Msa1369320 MtrunA17_Chr8g0366521 37.083 240 121 9 48 272 35 259 8.23e-29 114
Msa1369320 MtrunA17_Chr2g0307411 40.000 145 70 3 30 174 21 148 2.41e-28 109
Msa1369320 MtrunA17_Chr6g0486651 31.776 214 122 7 10 212 8 208 1.83e-26 108
Msa1369320 MtrunA17_Chr4g0059281 36.747 166 85 4 22 171 16 177 2.16e-26 107
Msa1369320 MtrunA17_Chr4g0067591 47.423 97 45 2 95 190 78 169 1.44e-23 98.6
Msa1369320 MtrunA17_Chr2g0295571 57.692 78 30 1 96 173 92 166 2.53e-23 98.6
Msa1369320 MtrunA17_Chr5g0427431 39.695 131 73 3 46 174 82 208 3.72e-23 100
Msa1369320 MtrunA17_Chr5g0426781 36.416 173 75 6 32 172 31 200 7.44e-23 98.2
Msa1369320 MtrunA17_Chr4g0073141 41.176 136 72 2 43 172 57 190 1.15e-22 99.4
Msa1369320 MtrunA17_Chr3g0133001 50.000 82 38 1 93 174 126 204 1.53e-22 98.2
Msa1369320 MtrunA17_Chr1g0203541 43.158 95 50 2 81 171 87 181 2.74e-22 93.6
Msa1369320 MtrunA17_Chr5g0413841 36.184 152 74 4 42 174 43 190 2.54e-21 94.0
Msa1369320 MtrunA17_Chr1g0167811 33.333 147 82 3 34 168 23 165 1.52e-20 91.3
Msa1369320 MtrunA17_Chr2g0325161 38.614 101 59 1 94 191 88 188 1.71e-20 89.4
Msa1369320 MtrunA17_Chr7g0274741 32.867 143 86 2 42 174 5 147 3.25e-20 87.0
Msa1369320 MtrunA17_Chr8g0336881 31.646 158 102 2 44 196 19 175 3.71e-20 90.1
Msa1369320 MtrunA17_Chr8g0383941 34.722 144 83 5 32 172 45 180 5.82e-20 87.4
Msa1369320 MtrunA17_Chr1g0186661 48.101 79 38 1 96 171 98 176 6.30e-20 89.7
Msa1369320 MtrunA17_Chr3g0128771 32.919 161 87 5 30 175 14 168 8.01e-20 85.9
Msa1369320 MtrunA17_Chr3g0105441 46.988 83 43 1 91 172 96 178 8.33e-20 87.8
Msa1369320 MtrunA17_Chr6g0451161 34.266 143 76 4 43 171 66 204 1.18e-19 89.4
Msa1369320 MtrunA17_Chr5g0411081 33.333 141 77 3 45 171 56 193 1.52e-19 89.0
Msa1369320 MtrunA17_Chr7g0276591 35.099 151 79 3 30 171 6 146 2.44e-19 87.4
Msa1369320 MtrunA17_Chr2g0279431 52.439 82 30 2 97 175 135 210 2.91e-19 88.6
Msa1369320 MtrunA17_Chr8g0381731 48.148 81 39 2 97 177 148 225 1.08e-18 85.5
Msa1369320 MtrunA17_Chr8g0366561 32.168 143 88 4 45 180 56 196 1.13e-18 86.3
Msa1369320 MtrunA17_Chr1g0197031 30.282 142 92 3 34 173 13 149 1.37e-18 82.4
Msa1369320 MtrunA17_Chr1g0177041 39.241 79 48 0 97 175 74 152 1.84e-18 82.0
Msa1369320 MtrunA17_Chr4g0050041 43.878 98 52 2 97 194 126 220 2.74e-18 85.1
Msa1369320 MtrunA17_Chr8g0383861 32.653 147 88 5 33 172 44 186 3.14e-18 82.8
Msa1369320 MtrunA17_Chr4g0027761 44.156 77 37 1 96 172 99 169 4.20e-18 81.6
Msa1369320 MtrunA17_Chr1g0197021 31.757 148 91 4 34 179 13 152 4.73e-18 80.5
Msa1369320 MtrunA17_Chr8g0383881 30.323 155 105 2 19 172 24 176 5.43e-18 82.0
Msa1369320 MtrunA17_Chr2g0325141 32.857 140 77 4 50 174 2 139 5.57e-18 80.1
Msa1369320 MtrunA17_Chr8g0364881 48.684 76 34 2 97 171 68 139 9.07e-18 83.6
Msa1369320 MtrunA17_Chr8g0370171 34.043 141 68 5 38 169 17 141 1.20e-17 80.5
Msa1369320 MtrunA17_Chr7g0244851 34.839 155 83 7 35 182 19 162 1.24e-17 80.1
Msa1369320 MtrunA17_Chr5g0407431 32.031 128 66 4 48 168 34 147 1.67e-17 80.5
Msa1369320 MtrunA17_Chr5g0409201 31.447 159 88 6 31 180 1 147 1.77e-17 79.0
Msa1369320 MtrunA17_Chr1g0184171 31.159 138 81 5 46 171 40 175 2.08e-17 82.4
Msa1369320 MtrunA17_Chr2g0301871 45.833 72 39 0 106 177 63 134 2.32e-17 81.6
Msa1369320 MtrunA17_Chr5g0409211 32.192 146 85 4 38 175 4 143 2.34e-17 79.0
Msa1369320 MtrunA17_Chr8g0383871 31.034 145 94 3 32 172 43 185 4.55e-17 79.3
Msa1369320 MtrunA17_Chr3g0126931 46.053 76 38 1 97 172 101 173 4.63e-17 81.6
Msa1369320 MtrunA17_Chr7g0274711 44.872 78 43 0 94 171 64 141 5.05e-17 78.2
Msa1369320 MtrunA17_Chr1g0184631 44.872 78 43 0 94 171 65 142 7.67e-17 77.8
Msa1369320 MtrunA17_Chr8g0345361 47.368 76 35 2 97 172 92 162 8.26e-17 79.3
Msa1369320 MtrunA17_Chr4g0030831 35.052 97 52 2 76 172 73 158 8.57e-17 77.4
Msa1369320 MtrunA17_Chr1g0198201 32.278 158 88 6 47 187 3 158 1.62e-16 77.8
Msa1369320 MtrunA17_Chr3g0113811 27.344 128 92 1 50 176 29 156 1.66e-16 76.6
Msa1369320 MtrunA17_Chr3g0129671 31.973 147 86 6 48 190 63 199 1.86e-16 77.8
Msa1369320 MtrunA17_Chr6g0451051 31.496 127 76 3 53 179 4 119 2.00e-16 75.9
Msa1369320 MtrunA17_Chr5g0444161 40.541 74 43 1 95 168 155 227 2.67e-16 77.4
Msa1369320 MtrunA17_Chr7g0248831 39.024 82 49 1 94 175 77 157 3.53e-16 75.9
Msa1369320 MtrunA17_Chr8g0383921 29.371 143 97 2 32 172 44 184 3.64e-16 76.6
Msa1369320 MtrunA17_Chr5g0430781 41.860 86 41 2 96 181 86 162 3.65e-16 76.6
Msa1369320 MtrunA17_Chr5g0437361 33.913 115 65 3 58 171 44 148 4.89e-16 75.1
Msa1369320 MtrunA17_Chr6g0451031 31.008 129 82 3 51 179 1 122 5.06e-16 73.9
Msa1369320 MtrunA17_Chr3g0081611 31.387 137 83 5 47 175 24 157 5.11e-16 75.5
Msa1369320 MtrunA17_Chr7g0248841 36.145 83 52 1 92 173 69 151 6.57e-16 74.7
Msa1369320 MtrunA17_Chr8g0369571 40.217 92 54 1 123 214 87 177 8.56e-16 74.7
Msa1369320 MtrunA17_Chr7g0261091 30.147 136 80 4 48 171 13 145 1.16e-15 77.0
Msa1369320 MtrunA17_Chr8g0383901 32.414 145 84 5 32 172 43 177 1.45e-15 75.1
Msa1369320 MtrunA17_Chr5g0444141 38.462 78 47 1 95 172 190 266 3.16e-15 75.1
Msa1369320 MtrunA17_Chr3g0118061 44.156 77 42 1 95 171 74 149 3.47e-15 73.9
Msa1369320 MtrunA17_Chr7g0269491 40.789 76 44 1 98 173 67 141 4.21e-15 73.2
Msa1369320 MtrunA17_Chr7g0246761 31.746 126 81 3 97 220 63 185 9.19e-15 72.0
Msa1369320 MtrunA17_Chr2g0327791 38.889 72 43 1 98 169 108 178 1.09e-14 72.8
Msa1369320 MtrunA17_Chr8g0348151 40.506 79 42 2 97 175 90 163 1.28e-14 72.0
Msa1369320 MtrunA17_Chr3g0118071 44.156 77 42 1 95 171 74 149 1.34e-14 72.4
Msa1369320 MtrunA17_Chr4g0013561 33.019 106 67 1 97 202 85 186 1.45e-14 72.4
Msa1369320 MtrunA17_Chr8g0343571 35.238 105 57 3 105 207 68 163 1.58e-14 70.9
Msa1369320 MtrunA17_Chr3g0120011 45.070 71 39 0 126 196 119 189 1.58e-14 72.0
Msa1369320 MtrunA17_Chr3g0144241 31.915 141 82 4 48 183 30 161 1.66e-14 71.6
Msa1369320 MtrunA17_Chr2g0297011 30.882 136 86 4 47 182 29 156 4.13e-14 69.7
Msa1369320 MtrunA17_Chr7g0274721 36.957 92 52 2 79 169 50 136 4.50e-14 69.7
Msa1369320 MtrunA17_Chr2g0300331 35.246 122 74 4 51 169 93 212 5.67e-14 70.9
Msa1369320 MtrunA17_Chr7g0275601 38.947 95 53 3 93 184 72 164 6.58e-14 68.9
Msa1369320 MtrunA17_Chr3g0143301 50.000 64 28 2 115 174 56 119 7.94e-14 67.8
Msa1369320 MtrunA17_Chr5g0406031 38.462 78 47 1 94 171 158 234 1.06e-13 70.1
Msa1369320 MtrunA17_Chr8g0350741 34.314 102 64 2 99 200 64 162 1.23e-13 68.6
Msa1369320 MtrunA17_Chr8g0383931 43.478 69 33 2 106 172 123 187 2.07e-13 69.3
Msa1369320 MtrunA17_Chr8g0388231 42.667 75 40 2 95 168 307 379 2.97e-13 70.5
Msa1369320 MtrunA17_Chr4g0010171 33.065 124 73 3 48 171 45 158 5.10e-13 67.0
Msa1369320 MtrunA17_Chr7g0274731 35.870 92 53 2 79 169 71 157 5.22e-13 67.4
Msa1369320 MtrunA17_Chr8g0347101 54.000 50 23 0 126 175 314 363 5.78e-13 69.3
Msa1369320 MtrunA17_Chr1g0157091 53.061 49 23 0 125 173 70 118 7.14e-13 65.1
Msa1369320 MtrunA17_Chr5g0396601 43.590 78 31 2 97 168 322 392 9.87e-13 68.9
Msa1369320 MtrunA17_Chr4g0069761 48.148 54 21 1 126 172 21 74 2.40e-12 62.8
Msa1369320 MtrunA17_Chr8g0369691 38.356 73 41 3 101 172 422 491 2.66e-12 68.2
Msa1369320 MtrunA17_Chr5g0396611 43.590 78 31 2 97 168 312 382 3.21e-12 67.4
Msa1369320 MtrunA17_Chr2g0317671 37.313 67 40 1 107 171 138 204 3.59e-12 65.1
Msa1369320 MtrunA17_Chr3g0118091 34.483 87 54 2 84 170 28 111 4.47e-12 63.2
Msa1369320 MtrunA17_Chr3g0126611 38.356 73 44 1 97 169 303 374 4.82e-12 66.6
Msa1369320 MtrunA17_Chr5g0396591 42.308 78 32 2 97 168 212 282 7.82e-12 65.5
Msa1369320 MtrunA17_Chr4g0052671 29.752 121 78 2 48 168 35 148 8.13e-12 62.8
Msa1369320 MtrunA17_Chr8g0387291 40.299 67 39 1 113 178 73 139 9.05e-12 62.8
Msa1369320 MtrunA17_Chr3g0124531 50.000 50 23 2 125 173 68 116 9.27e-12 62.8
Msa1369320 MtrunA17_Chr4g0060981 47.826 46 24 0 126 171 174 219 1.04e-11 63.9
Msa1369320 MtrunA17_Chr6g0451041 38.889 54 33 0 126 179 18 71 1.11e-11 60.8
Msa1369320 MtrunA17_Chr7g0237871 36.842 76 47 1 103 178 136 210 1.20e-11 63.9
Msa1369320 MtrunA17_Chr8g0347461 39.437 71 39 2 103 171 117 185 1.34e-11 64.7
Msa1369320 MtrunA17_Chr8g0371291 51.111 45 22 0 124 168 178 222 1.94e-11 63.2
Msa1369320 MtrunA17_Chr3g0117821 34.409 93 53 2 77 169 44 128 2.08e-11 61.6
Msa1369320 MtrunA17_Chr8g0388201 38.158 76 38 2 97 168 319 389 2.09e-11 65.1
Msa1369320 MtrunA17_Chr5g0397351 46.000 50 26 1 126 174 81 130 2.39e-11 60.8
Msa1369320 MtrunA17_Chr1g0197011 31.200 125 77 4 51 168 27 149 3.77e-11 60.8
Msa1369320 MtrunA17_Chr3g0118111 36.047 86 51 2 89 172 76 159 4.26e-11 61.6
Msa1369320 MtrunA17_Chr8g0345381 45.652 46 25 0 126 171 53 98 6.26e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369320 AT3G05200.1 48.851 348 145 11 16 358 15 334 1.72e-90 278
Msa1369320 AT1G72200.1 41.643 353 175 12 24 366 37 368 2.18e-75 239
Msa1369320 AT5G27420.1 44.225 355 123 12 39 358 36 350 6.39e-75 236
Msa1369320 AT1G22500.1 39.474 342 188 8 37 372 28 356 1.41e-66 216
Msa1369320 AT1G35330.1 39.172 314 168 9 11 314 9 309 2.19e-53 179
Msa1369320 AT4G40070.1 37.931 319 148 13 45 354 43 320 2.40e-53 179
Msa1369320 AT4G09120.1 42.667 300 133 13 51 345 51 316 2.91e-53 180
Msa1369320 AT4G09130.1 38.558 319 162 9 11 318 12 307 1.08e-50 173
Msa1369320 AT2G35000.1 42.449 245 116 8 48 277 51 285 1.70e-50 174
Msa1369320 AT2G34990.1 42.041 245 105 8 43 276 9 227 5.79e-49 167
Msa1369320 AT2G34990.2 42.041 245 105 8 43 276 31 249 7.07e-49 168
Msa1369320 AT4G09110.1 36.364 253 89 6 93 345 90 270 4.65e-40 144
Msa1369320 AT4G17920.1 31.469 286 167 8 44 315 19 289 1.18e-36 134
Msa1369320 AT5G46650.1 33.205 259 141 7 33 276 8 249 4.35e-36 133
Msa1369320 AT4G09100.1 56.098 82 36 0 92 173 51 132 2.39e-27 105
Msa1369320 AT2G27940.1 36.364 143 71 3 44 170 46 184 2.71e-27 108
Msa1369320 AT2G20030.1 41.096 146 71 5 46 181 39 179 1.97e-25 106
Msa1369320 AT5G05810.1 35.570 149 80 2 39 174 49 194 1.44e-24 104
Msa1369320 AT3G16720.1 35.632 174 88 4 25 184 9 172 8.01e-24 100
Msa1369320 AT4G28890.1 33.333 180 99 5 17 179 1 176 6.54e-23 99.8
Msa1369320 AT1G23980.1 35.616 146 75 3 42 171 47 189 2.49e-22 97.4
Msa1369320 AT2G18650.1 40.708 113 65 1 60 172 62 172 4.30e-22 97.4
Msa1369320 AT5G40250.1 27.244 312 170 10 42 322 39 324 4.42e-22 96.7
Msa1369320 AT2G35420.1 33.333 228 99 10 45 256 18 208 6.51e-22 94.0
Msa1369320 AT5G17600.1 36.641 131 65 4 51 169 61 185 1.24e-21 95.5
Msa1369320 AT1G04360.1 33.333 144 72 3 46 171 42 179 1.06e-20 92.8
Msa1369320 AT4G17905.1 31.548 168 85 5 44 188 58 218 1.23e-20 91.7
Msa1369320 AT4G17905.2 31.548 168 85 5 44 188 84 244 2.14e-20 91.3
Msa1369320 AT1G72220.1 39.855 138 61 6 51 172 92 223 2.64e-20 92.0
Msa1369320 AT3G62690.1 33.880 183 100 6 33 206 14 184 2.86e-20 89.7
Msa1369320 AT5G43420.1 29.902 204 115 5 46 223 35 236 8.15e-20 90.1
Msa1369320 AT4G15975.1 46.250 80 39 1 97 176 51 126 9.50e-20 87.8
Msa1369320 AT1G32361.1 36.145 166 84 7 97 255 130 280 1.12e-19 89.4
Msa1369320 AT4G30400.1 52.778 72 32 1 97 168 107 176 2.35e-19 89.7
Msa1369320 AT3G18930.2 49.425 87 37 2 97 176 120 206 4.00e-19 88.6
Msa1369320 AT3G18930.3 49.425 87 37 2 97 176 120 206 4.00e-19 88.6
Msa1369320 AT3G18930.1 49.425 87 37 2 97 176 120 206 4.00e-19 88.6
Msa1369320 AT4G33565.1 53.947 76 32 2 97 172 191 263 4.47e-19 88.2
Msa1369320 AT2G42360.1 33.871 124 74 2 52 175 42 157 4.81e-19 85.9
Msa1369320 AT5G05280.1 32.192 146 75 5 36 172 29 159 8.07e-19 83.6
Msa1369320 AT3G48030.2 49.333 75 36 1 97 171 102 174 9.66e-19 85.5
Msa1369320 AT4G10150.1 34.228 149 83 5 36 175 18 160 1.11e-18 84.7
Msa1369320 AT3G48030.1 49.333 75 36 1 97 171 180 252 1.14e-18 86.7
Msa1369320 AT1G49200.1 29.730 185 109 6 39 220 50 216 2.68e-18 83.6
Msa1369320 AT3G10910.1 34.161 161 84 6 26 172 8 160 2.90e-18 82.0
Msa1369320 AT3G03550.1 31.788 151 76 3 46 172 58 205 3.44e-18 85.5
Msa1369320 AT5G10380.1 44.340 106 44 5 97 197 109 204 5.61e-18 84.0
Msa1369320 AT4G10160.1 34.646 127 75 3 52 175 25 146 6.57e-18 82.4
Msa1369320 AT5G01880.1 43.137 102 48 4 71 172 60 151 7.33e-18 80.5
Msa1369320 AT3G18773.1 27.941 204 123 7 21 220 27 210 8.35e-18 82.0
Msa1369320 AT2G42350.1 48.718 78 36 2 96 173 74 147 8.70e-18 81.6
Msa1369320 AT5G57750.1 32.374 139 78 4 44 170 32 166 1.04e-17 81.3
Msa1369320 AT2G46493.1 37.097 124 75 2 47 168 58 180 1.60e-17 80.1
Msa1369320 AT1G49230.1 30.556 180 107 7 42 220 50 212 2.75e-17 80.5
Msa1369320 AT3G60220.1 47.222 72 38 0 100 171 91 162 6.66e-17 81.3
Msa1369320 AT1G76410.1 36.220 127 75 4 48 172 28 150 6.84e-17 78.6
Msa1369320 AT2G47560.1 34.000 150 93 4 26 173 10 155 7.10e-17 79.3
Msa1369320 AT1G49220.1 30.000 190 115 7 39 225 49 223 7.87e-17 79.7
Msa1369320 AT5G07040.1 31.008 129 84 3 47 174 18 142 2.35e-16 76.3
Msa1369320 AT1G49210.1 34.127 126 65 3 96 220 107 215 3.11e-16 77.4
Msa1369320 AT2G25410.1 38.542 96 57 2 80 173 279 374 3.14e-16 79.7
Msa1369320 AT2G34000.1 36.441 118 68 3 53 168 21 133 4.17e-16 75.5
Msa1369320 AT1G53820.1 37.647 85 48 2 97 181 95 174 1.60e-15 77.0
Msa1369320 AT5G53110.1 39.167 120 62 5 57 168 256 372 2.62e-15 77.0
Msa1369320 AT1G20823.1 31.973 147 79 6 38 172 20 157 2.71e-15 74.3
Msa1369320 AT3G14320.1 44.444 72 36 1 97 168 63 130 3.42e-15 73.9
Msa1369320 AT1G72310.1 42.500 80 42 1 97 172 94 173 3.45e-15 76.3
Msa1369320 AT2G17450.1 32.061 131 75 4 48 173 28 149 3.96e-15 73.6
Msa1369320 AT1G28040.1 44.444 72 39 1 97 168 225 295 4.08e-15 75.5
Msa1369320 AT2G46494.1 43.038 79 44 1 90 168 281 358 4.23e-15 76.3
Msa1369320 AT5G06490.1 35.714 84 50 1 97 176 96 179 5.81e-15 73.2
Msa1369320 AT3G61550.1 36.458 96 51 2 97 183 99 193 6.62e-15 73.6
Msa1369320 AT2G46160.1 41.667 84 44 1 97 175 104 187 6.72e-15 73.6
Msa1369320 AT2G46160.2 41.667 84 44 1 97 175 104 187 6.72e-15 73.6
Msa1369320 AT2G35910.1 41.772 79 43 1 97 175 121 196 1.07e-14 73.2
Msa1369320 AT2G46495.1 33.099 142 89 4 38 176 230 368 1.14e-14 75.1
Msa1369320 AT2G46495.2 38.144 97 57 2 81 176 246 340 2.88e-14 73.6
Msa1369320 AT5G58580.1 30.709 127 86 1 88 214 102 226 3.08e-14 73.2
Msa1369320 AT5G42200.1 57.143 49 21 0 125 173 103 151 3.76e-14 70.1
Msa1369320 AT4G35480.1 51.852 54 26 0 120 173 107 160 4.64e-14 70.9
Msa1369320 AT1G33480.1 39.474 76 44 1 125 198 99 174 5.12e-14 72.0
Msa1369320 AT5G47610.1 37.975 79 47 1 100 178 83 159 2.25e-13 68.2
Msa1369320 AT3G11110.1 25.899 139 100 2 33 171 17 152 2.27e-13 67.8
Msa1369320 AT1G74410.1 36.486 74 44 1 95 168 148 218 1.04e-12 67.4
Msa1369320 AT4G35840.1 37.647 85 39 2 94 171 159 236 1.05e-12 67.8
Msa1369320 AT5G66070.5 44.828 58 32 0 114 171 164 221 1.16e-12 67.4
Msa1369320 AT5G66070.1 44.828 58 32 0 114 171 164 221 1.16e-12 67.4
Msa1369320 AT3G19140.1 37.662 77 44 1 95 171 52 124 1.74e-12 64.7
Msa1369320 AT5G66070.2 44.828 58 32 0 114 171 188 245 1.79e-12 67.0
Msa1369320 AT3G60966.1 50.943 53 26 0 126 178 62 114 2.29e-12 64.3
Msa1369320 AT4G17245.1 33.607 122 76 4 57 177 37 154 6.36e-12 63.9
Msa1369320 AT2G18670.1 32.967 91 54 2 92 177 78 166 7.75e-12 63.9
Msa1369320 AT3G20395.1 40.789 76 40 3 96 171 146 216 8.57e-12 64.7
Msa1369320 AT2G17730.1 33.333 78 52 0 94 171 164 241 1.03e-11 64.7
Msa1369320 AT1G35625.1 31.343 134 76 7 48 179 165 284 1.45e-11 65.5
Msa1369320 AT4G24015.1 54.348 46 21 0 126 171 105 150 1.59e-11 62.8
Msa1369320 AT5G36001.1 53.488 43 20 0 126 168 264 306 1.73e-11 65.1
Msa1369320 AT2G44578.1 48.000 50 26 0 126 175 70 119 2.78e-11 61.6
Msa1369320 AT3G30460.2 34.343 99 59 4 79 176 90 183 2.89e-11 62.4
Msa1369320 AT3G30460.1 34.343 99 59 4 79 176 54 147 3.14e-11 61.2
Msa1369320 AT1G53010.1 48.936 47 24 0 125 171 129 175 3.59e-11 62.0
Msa1369320 AT5G41400.1 36.232 69 42 1 106 172 85 153 4.04e-11 61.6
Msa1369320 AT1G26800.1 41.176 68 38 2 112 179 99 164 5.00e-11 62.0
Msa1369320 AT4G30370.1 36.111 72 43 1 97 168 89 157 5.88e-11 61.2

Find 108 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGGTTTGCAGAGCTAATT+TGG 0.212949 tig0018779:-4573 Msa1369320:CDS
CTTCTAGCTCTATGTAATTC+CGG 0.266296 tig0018779:+4224 None:intergenic
AGCTAATTTGGTTCCTCAAC+CGG 0.306735 tig0018779:-4561 Msa1369320:CDS
CGGTCATTCGGTGGTTCAAC+CGG 0.317157 tig0018779:-4315 Msa1369320:CDS
GTGAACCTCTTGTACGGTTC+CGG 0.356534 tig0018779:+4378 None:intergenic
TACGGTTCCGGTTCAGCGTC+TGG 0.359258 tig0018779:+4390 None:intergenic
TTCTAGCTCTATGTAATTCC+GGG 0.363125 tig0018779:+4225 None:intergenic
GTCTGTAAGGCGGTTGGACC+GGG 0.367584 tig0018779:-4123 Msa1369320:CDS
AGTCTGTAAGGCGGTTGGAC+CGG 0.371626 tig0018779:-4124 Msa1369320:CDS
TGGCTTACAGTCAACACTTC+TGG 0.379879 tig0018779:+4410 None:intergenic
AGCTTCAATATCTTGTGGTT+CGG 0.385992 tig0018779:+4505 None:intergenic
CCAAGGGTGGCTAGTAGCTC+TGG 0.421442 tig0018779:-4029 Msa1369320:CDS
CACAGTCTGGTAGGCTTCGT+TGG 0.428411 tig0018779:-4358 Msa1369320:CDS
GACAATTAAACCGGTGGCCG+CGG 0.428720 tig0018779:+3960 None:intergenic
GTCTCACTCGACCGGTCATT+CGG 0.429376 tig0018779:-4327 Msa1369320:CDS
TTCTCCGGCGTCCCCTTCGC+CGG 0.431079 tig0018779:-5001 Msa1369320:CDS
CTGTAAGCCAGACGCTGAAC+CGG 0.432316 tig0018779:-4397 Msa1369320:CDS
GTTGGATTGTGCTCCGGCGA+AGG 0.435306 tig0018779:+4988 None:intergenic
TTGGATTGTGCTCCGGCGAA+GGG 0.440848 tig0018779:+4989 None:intergenic
GCTGTGAAGATTCATAAAAT+CGG 0.441212 tig0018779:-4728 Msa1369320:CDS
CGGTTCTCATACCACTTGTC+CGG 0.441794 tig0018779:-4591 Msa1369320:CDS
GGTTCCTCAACCGGGTGAAT+CGG 0.448219 tig0018779:-4552 Msa1369320:CDS
ACCCTGAGTGTATTGATGAA+TGG 0.454351 tig0018779:-4616 Msa1369320:CDS
ACACTGAACGGTTCACTTTG+AGG 0.456031 tig0018779:-4286 Msa1369320:CDS
TGTTGACTCCCCGCGGCCAC+CGG 0.459445 tig0018779:-3970 Msa1369320:CDS
ATTTGTTTCCTCACTTCAAC+CGG 0.460725 tig0018779:+4260 None:intergenic
ACAATTAAACCGGTGGCCGC+GGG 0.470750 tig0018779:+3961 None:intergenic
TCATCGACGACGCTCTTACA+AGG 0.474117 tig0018779:+4057 None:intergenic
GTAGTAGAGGGAAGTCTGTA+AGG 0.476128 tig0018779:-4136 Msa1369320:CDS
ACCAAATTAGCTCTGCAAAC+CGG 0.481146 tig0018779:+4572 None:intergenic
AAGATTCATAAAATCGGAAA+AGG 0.498603 tig0018779:-4722 Msa1369320:CDS
TGCTTCAGCAGCTACGGCGG+CGG 0.499866 tig0018779:-3994 Msa1369320:CDS
TGCCATGTTGCGTATGCTGT+TGG 0.500893 tig0018779:+4835 None:intergenic
ACGGTTCACTTTGAGGCTAC+CGG 0.501722 tig0018779:-4279 Msa1369320:CDS
AGGGGTTATCGAACCGGTGG+TGG 0.502322 tig0018779:-4167 Msa1369320:CDS
GCTAATTTGGTTCCTCAACC+GGG 0.505025 tig0018779:-4560 Msa1369320:CDS
GTGGTTCGGTATTAATCGAC+GGG 0.509943 tig0018779:+4519 None:intergenic
TCAAAACGAAGCTGTTGAAT+CGG 0.511719 tig0018779:-4483 Msa1369320:CDS
ACTACTTCCTTCACCACCAC+CGG 0.514270 tig0018779:+4154 None:intergenic
ACAGCTGAGTATTCAAAGAT+CGG 0.516546 tig0018779:+4746 None:intergenic
CAGCTGAGTATTCAAAGATC+GGG 0.520772 tig0018779:+4747 None:intergenic
TATCGAACCGGTGGTGGTGA+AGG 0.528546 tig0018779:-4161 Msa1369320:CDS
CGGTTGAACCACCGAATGAC+CGG 0.529306 tig0018779:+4316 None:intergenic
GCTGAAACAGACAATTAAAC+CGG 0.531764 tig0018779:+3951 None:intergenic
CAACCGGGTGAATCGGTTCA+CGG 0.534267 tig0018779:-4545 Msa1369320:CDS
ACCGGGGTTTATTATCAGAC+CGG 0.534594 tig0018779:-4106 Msa1369320:CDS
CTCCGTGAACTAGTTTCTCT+CGG 0.538814 tig0018779:+4188 None:intergenic
AGCGCGTGGTCTTGACGCAT+CGG 0.542829 tig0018779:-4783 Msa1369320:CDS
GTCAACACTTCTGGTTCAGT+TGG 0.543615 tig0018779:+4419 None:intergenic
GGTGGTGAAGGAAGTAGTAG+AGG 0.547027 tig0018779:-4149 Msa1369320:CDS
TGCTCCGGCGAAGGGGACGC+CGG 0.550536 tig0018779:+4997 None:intergenic
ACGATTATTATAGCCATGGA+AGG 0.551241 tig0018779:+4929 None:intergenic
TACATCTGCTTCAGCAGCTA+CGG 0.555290 tig0018779:-4000 Msa1369320:CDS
AACATGGCAGGAGGTTTAGC+TGG 0.555970 tig0018779:-4821 Msa1369320:CDS
CCAGAGCTACTAGCCACCCT+TGG 0.560296 tig0018779:+4029 None:intergenic
GTGGTGAAGGAAGTAGTAGA+GGG 0.560832 tig0018779:-4148 Msa1369320:CDS
AGGGAAGTCTGTAAGGCGGT+TGG 0.563226 tig0018779:-4129 Msa1369320:CDS
GGTCATTCGGTGGTTCAACC+GGG 0.563296 tig0018779:-4314 Msa1369320:CDS
CGATTATTATAGCCATGGAA+GGG 0.570321 tig0018779:+4930 None:intergenic
TAAAATCGGAAAAGGCGCGT+TGG 0.576420 tig0018779:-4714 Msa1369320:CDS
AATTACGATTATTATAGCCA+TGG 0.576610 tig0018779:+4925 None:intergenic
CAACCGTGTAAGCCCTTCCA+TGG 0.576724 tig0018779:-4942 Msa1369320:CDS
AACCGTTCAGTGTTCTCACC+CGG 0.577046 tig0018779:+4296 None:intergenic
CAAGAGGTTCACAGTCTGGT+AGG 0.578814 tig0018779:-4367 Msa1369320:CDS
TGCCGAGAGAAACTAGTTCA+CGG 0.579406 tig0018779:-4190 Msa1369320:CDS
TGGATTGTGCTCCGGCGAAG+GGG 0.581939 tig0018779:+4990 None:intergenic
TGAACCGATTCACCCGGTTG+AGG 0.582525 tig0018779:+4548 None:intergenic
ATTACATAGAGCTAGAAGCT+TGG 0.585444 tig0018779:-4219 Msa1369320:CDS
TTGTAAGAGCGTCGTCGATG+AGG 0.587789 tig0018779:-4055 Msa1369320:CDS
TGTGGTTCGGTATTAATCGA+CGG 0.592922 tig0018779:+4518 None:intergenic
TAGCCATGGAAGGGCTTACA+CGG 0.600576 tig0018779:+4939 None:intergenic
GGGGTTTATTATCAGACCGG+TGG 0.601732 tig0018779:-4103 Msa1369320:CDS
CAGACTGTGAACCTCTTGTA+CGG 0.601926 tig0018779:+4372 None:intergenic
AACAGCATACGCAACATGGC+AGG 0.603528 tig0018779:-4833 Msa1369320:CDS
TTCCAACAGCATACGCAACA+TGG 0.603661 tig0018779:-4837 Msa1369320:CDS
AGCTCTGCAAACCGGACAAG+TGG 0.605322 tig0018779:+4580 None:intergenic
GAGAGAAACTAGTTCACGGA+GGG 0.607219 tig0018779:-4186 Msa1369320:CDS
ACAAATACTACTACAGAACC+CGG 0.610210 tig0018779:-4243 Msa1369320:CDS
TCAATCTACATCCGTCGATG+CGG 0.611966 tig0018779:-4869 Msa1369320:CDS
GTCGATGAGGTCACCAAGGG+TGG 0.612726 tig0018779:-4042 Msa1369320:CDS
TGAGGCTACCGGTTGAAGTG+AGG 0.617089 tig0018779:-4268 Msa1369320:CDS
AGCCATTCATCAATACACTC+AGG 0.617765 tig0018779:+4614 None:intergenic
GGGTTTATTATCAGACCGGT+GGG 0.618718 tig0018779:-4102 Msa1369320:CDS
CTGAACCGGAACCGTACAAG+AGG 0.626899 tig0018779:-4383 Msa1369320:CDS
GTGGCTAGTAGCTCTGGTGA+AGG 0.628823 tig0018779:-4023 Msa1369320:CDS
GACGACGCTCTTACAAGGAA+AGG 0.631736 tig0018779:+4062 None:intergenic
CAATTAAACCGGTGGCCGCG+GGG 0.633322 tig0018779:+3962 None:intergenic
GAGTGTATTGATGAATGGCT+CGG 0.639572 tig0018779:-4611 Msa1369320:CDS
GTCGTCGATGAGGTCACCAA+GGG 0.640752 tig0018779:-4045 Msa1369320:CDS
ATCTGCTTCAGCAGCTACGG+CGG 0.641205 tig0018779:-3997 Msa1369320:CDS
AAGGTGAATCGCCGCATCGA+CGG 0.646247 tig0018779:+4858 None:intergenic
GACGCTCTTACAAGGAAAGG+TGG 0.654435 tig0018779:+4065 None:intergenic
ATGTTGCGTATGCTGTTGGA+AGG 0.655101 tig0018779:+4839 None:intergenic
CGTCGTCGATGAGGTCACCA+AGG 0.655380 tig0018779:-4046 Msa1369320:CDS
GCCATTCATCAATACACTCA+GGG 0.657590 tig0018779:+4615 None:intergenic
ATACCGTGAACCGATTCACC+CGG 0.658513 tig0018779:+4542 None:intergenic
TCACTCGACCGGTCATTCGG+TGG 0.659670 tig0018779:-4324 Msa1369320:CDS
AGCATACGCAACATGGCAGG+AGG 0.660418 tig0018779:-4830 Msa1369320:CDS
CGGAGGGGTTATCGAACCGG+TGG 0.660988 tig0018779:-4170 Msa1369320:CDS
AACCGGGTGAGAACACTGAA+CGG 0.665353 tig0018779:-4298 Msa1369320:CDS
GAAACAGACAATTAAACCGG+TGG 0.672321 tig0018779:+3954 None:intergenic
CATGAACATCAAAACGCGGA+CGG 0.680031 tig0018779:-4458 Msa1369320:CDS
AGAGAAACTAGTTCACGGAG+GGG 0.692307 tig0018779:-4185 Msa1369320:CDS
ACCGGTCTGATAATAAACCC+CGG 0.693889 tig0018779:+4105 None:intergenic
GTAGAGGGAAGTCTGTAAGG+CGG 0.711054 tig0018779:-4133 Msa1369320:CDS
CGAGAGAAACTAGTTCACGG+AGG 0.730676 tig0018779:-4187 Msa1369320:CDS
CGGCGGTTGTTGACTCCCCG+CGG 0.731222 tig0018779:-3977 Msa1369320:CDS
GGTTCATGAACATCAAAACG+CGG 0.772463 tig0018779:-4462 Msa1369320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATTACGATTATTATAGCCA+TGG + tig0018779:4107-4126 None:intergenic 25.0%
! AAGATTCATAAAATCGGAAA+AGG - tig0018779:4307-4326 Msa1369320:CDS 25.0%
! AATTACGATTATTATAGCCA+TGG + tig0018779:4107-4126 None:intergenic 25.0%
! AAGATTCATAAAATCGGAAA+AGG - tig0018779:4307-4326 Msa1369320:CDS 25.0%
AGAACAAGAAAAAACACACA+AGG + tig0018779:4000-4019 None:intergenic 30.0%
GCTGTGAAGATTCATAAAAT+CGG - tig0018779:4301-4320 Msa1369320:CDS 30.0%
TGAAAAACATGATCACACTT+TGG + tig0018779:4394-4413 None:intergenic 30.0%
! TTTTGAGCTTCAATATCTTG+TGG + tig0018779:4532-4551 None:intergenic 30.0%
AGAACAAGAAAAAACACACA+AGG + tig0018779:4000-4019 None:intergenic 30.0%
GCTGTGAAGATTCATAAAAT+CGG - tig0018779:4301-4320 Msa1369320:CDS 30.0%
TGAAAAACATGATCACACTT+TGG + tig0018779:4394-4413 None:intergenic 30.0%
! TTTTGAGCTTCAATATCTTG+TGG + tig0018779:4532-4551 None:intergenic 30.0%
! TTGTTCTTCCTCTTTTTCTC+CGG - tig0018779:4013-4032 Msa1369320:CDS 35.0%
CGATTATTATAGCCATGGAA+GGG + tig0018779:4102-4121 None:intergenic 35.0%
ACGATTATTATAGCCATGGA+AGG + tig0018779:4103-4122 None:intergenic 35.0%
ACAGCTGAGTATTCAAAGAT+CGG + tig0018779:4286-4305 None:intergenic 35.0%
AGCTTCAATATCTTGTGGTT+CGG + tig0018779:4527-4546 None:intergenic 35.0%
TCAAAACGAAGCTGTTGAAT+CGG - tig0018779:4546-4565 Msa1369320:CDS 35.0%
ATTTGTTTCCTCACTTCAAC+CGG + tig0018779:4772-4791 None:intergenic 35.0%
ACAAATACTACTACAGAACC+CGG - tig0018779:4786-4805 Msa1369320:CDS 35.0%
!! TTCTAGCTCTATGTAATTCC+GGG + tig0018779:4807-4826 None:intergenic 35.0%
!! CTTCTAGCTCTATGTAATTC+CGG + tig0018779:4808-4827 None:intergenic 35.0%
ATTACATAGAGCTAGAAGCT+TGG - tig0018779:4810-4829 Msa1369320:CDS 35.0%
! TTGTTCTTCCTCTTTTTCTC+CGG - tig0018779:4013-4032 Msa1369320:CDS 35.0%
CGATTATTATAGCCATGGAA+GGG + tig0018779:4102-4121 None:intergenic 35.0%
ACGATTATTATAGCCATGGA+AGG + tig0018779:4103-4122 None:intergenic 35.0%
ACAGCTGAGTATTCAAAGAT+CGG + tig0018779:4286-4305 None:intergenic 35.0%
AGCTTCAATATCTTGTGGTT+CGG + tig0018779:4527-4546 None:intergenic 35.0%
TCAAAACGAAGCTGTTGAAT+CGG - tig0018779:4546-4565 Msa1369320:CDS 35.0%
ATTTGTTTCCTCACTTCAAC+CGG + tig0018779:4772-4791 None:intergenic 35.0%
ACAAATACTACTACAGAACC+CGG - tig0018779:4786-4805 Msa1369320:CDS 35.0%
!! TTCTAGCTCTATGTAATTCC+GGG + tig0018779:4807-4826 None:intergenic 35.0%
!! CTTCTAGCTCTATGTAATTC+CGG + tig0018779:4808-4827 None:intergenic 35.0%
ATTACATAGAGCTAGAAGCT+TGG - tig0018779:4810-4829 Msa1369320:CDS 35.0%
! AGAGTCGTTTGTGTTTTCGT+TGG + tig0018779:4062-4081 None:intergenic 40.0%
! ATCGCTGCTCTTTTTCTCAT+GGG - tig0018779:4130-4149 Msa1369320:CDS 40.0%
CAGCTGAGTATTCAAAGATC+GGG + tig0018779:4285-4304 None:intergenic 40.0%
! ACCCTGAGTGTATTGATGAA+TGG - tig0018779:4413-4432 Msa1369320:CDS 40.0%
GCCATTCATCAATACACTCA+GGG + tig0018779:4417-4436 None:intergenic 40.0%
AGCCATTCATCAATACACTC+AGG + tig0018779:4418-4437 None:intergenic 40.0%
! GAGTGTATTGATGAATGGCT+CGG - tig0018779:4418-4437 Msa1369320:CDS 40.0%
!! ACCAAATTAGCTCTGCAAAC+CGG + tig0018779:4460-4479 None:intergenic 40.0%
! AGCTAATTTGGTTCCTCAAC+CGG - tig0018779:4468-4487 Msa1369320:CDS 40.0%
!! TGTGGTTCGGTATTAATCGA+CGG + tig0018779:4514-4533 None:intergenic 40.0%
GGTTCATGAACATCAAAACG+CGG - tig0018779:4567-4586 Msa1369320:CDS 40.0%
! AGAGTCGTTTGTGTTTTCGT+TGG + tig0018779:4062-4081 None:intergenic 40.0%
! ATCGCTGCTCTTTTTCTCAT+GGG - tig0018779:4130-4149 Msa1369320:CDS 40.0%
CAGCTGAGTATTCAAAGATC+GGG + tig0018779:4285-4304 None:intergenic 40.0%
! ACCCTGAGTGTATTGATGAA+TGG - tig0018779:4413-4432 Msa1369320:CDS 40.0%
GCCATTCATCAATACACTCA+GGG + tig0018779:4417-4436 None:intergenic 40.0%
AGCCATTCATCAATACACTC+AGG + tig0018779:4418-4437 None:intergenic 40.0%
! GAGTGTATTGATGAATGGCT+CGG - tig0018779:4418-4437 Msa1369320:CDS 40.0%
!! ACCAAATTAGCTCTGCAAAC+CGG + tig0018779:4460-4479 None:intergenic 40.0%
! AGCTAATTTGGTTCCTCAAC+CGG - tig0018779:4468-4487 Msa1369320:CDS 40.0%
!! TGTGGTTCGGTATTAATCGA+CGG + tig0018779:4514-4533 None:intergenic 40.0%
GGTTCATGAACATCAAAACG+CGG - tig0018779:4567-4586 Msa1369320:CDS 40.0%
! GTTTTCGTTGGATTGTGCTC+CGG + tig0018779:4050-4069 None:intergenic 45.0%
! CATCGCTGCTCTTTTTCTCA+TGG - tig0018779:4129-4148 Msa1369320:CDS 45.0%
TCAATCTACATCCGTCGATG+CGG - tig0018779:4160-4179 Msa1369320:CDS 45.0%
ATGTTGCGTATGCTGTTGGA+AGG + tig0018779:4193-4212 None:intergenic 45.0%
TTCCAACAGCATACGCAACA+TGG - tig0018779:4192-4211 Msa1369320:CDS 45.0%
! TAAAATCGGAAAAGGCGCGT+TGG - tig0018779:4315-4334 Msa1369320:CDS 45.0%
! TCCGGTTTGCAGAGCTAATT+TGG - tig0018779:4456-4475 Msa1369320:CDS 45.0%
! GCTAATTTGGTTCCTCAACC+GGG - tig0018779:4469-4488 Msa1369320:CDS 45.0%
!! GTGGTTCGGTATTAATCGAC+GGG + tig0018779:4513-4532 None:intergenic 45.0%
CATGAACATCAAAACGCGGA+CGG - tig0018779:4571-4590 Msa1369320:CDS 45.0%
!! GTCAACACTTCTGGTTCAGT+TGG + tig0018779:4613-4632 None:intergenic 45.0%
TGGCTTACAGTCAACACTTC+TGG + tig0018779:4622-4641 None:intergenic 45.0%
CAGACTGTGAACCTCTTGTA+CGG + tig0018779:4660-4679 None:intergenic 45.0%
ACACTGAACGGTTCACTTTG+AGG - tig0018779:4743-4762 Msa1369320:CDS 45.0%
TGCCGAGAGAAACTAGTTCA+CGG - tig0018779:4839-4858 Msa1369320:CDS 45.0%
! CTCCGTGAACTAGTTTCTCT+CGG + tig0018779:4844-4863 None:intergenic 45.0%
GAGAGAAACTAGTTCACGGA+GGG - tig0018779:4843-4862 Msa1369320:CDS 45.0%
AGAGAAACTAGTTCACGGAG+GGG - tig0018779:4844-4863 Msa1369320:CDS 45.0%
GTGGTGAAGGAAGTAGTAGA+GGG - tig0018779:4881-4900 Msa1369320:CDS 45.0%
GTAGTAGAGGGAAGTCTGTA+AGG - tig0018779:4893-4912 Msa1369320:CDS 45.0%
ACCGGGGTTTATTATCAGAC+CGG - tig0018779:4923-4942 Msa1369320:CDS 45.0%
ACCGGTCTGATAATAAACCC+CGG + tig0018779:4927-4946 None:intergenic 45.0%
GGGTTTATTATCAGACCGGT+GGG - tig0018779:4927-4946 Msa1369320:CDS 45.0%
TACATCTGCTTCAGCAGCTA+CGG - tig0018779:5029-5048 Msa1369320:CDS 45.0%
! GTTTTCGTTGGATTGTGCTC+CGG + tig0018779:4050-4069 None:intergenic 45.0%
! CATCGCTGCTCTTTTTCTCA+TGG - tig0018779:4129-4148 Msa1369320:CDS 45.0%
TCAATCTACATCCGTCGATG+CGG - tig0018779:4160-4179 Msa1369320:CDS 45.0%
ATGTTGCGTATGCTGTTGGA+AGG + tig0018779:4193-4212 None:intergenic 45.0%
TTCCAACAGCATACGCAACA+TGG - tig0018779:4192-4211 Msa1369320:CDS 45.0%
! TAAAATCGGAAAAGGCGCGT+TGG - tig0018779:4315-4334 Msa1369320:CDS 45.0%
! TCCGGTTTGCAGAGCTAATT+TGG - tig0018779:4456-4475 Msa1369320:CDS 45.0%
! GCTAATTTGGTTCCTCAACC+GGG - tig0018779:4469-4488 Msa1369320:CDS 45.0%
!! GTGGTTCGGTATTAATCGAC+GGG + tig0018779:4513-4532 None:intergenic 45.0%
CATGAACATCAAAACGCGGA+CGG - tig0018779:4571-4590 Msa1369320:CDS 45.0%
!! GTCAACACTTCTGGTTCAGT+TGG + tig0018779:4613-4632 None:intergenic 45.0%
TGGCTTACAGTCAACACTTC+TGG + tig0018779:4622-4641 None:intergenic 45.0%
CAGACTGTGAACCTCTTGTA+CGG + tig0018779:4660-4679 None:intergenic 45.0%
ACACTGAACGGTTCACTTTG+AGG - tig0018779:4743-4762 Msa1369320:CDS 45.0%
TGCCGAGAGAAACTAGTTCA+CGG - tig0018779:4839-4858 Msa1369320:CDS 45.0%
! CTCCGTGAACTAGTTTCTCT+CGG + tig0018779:4844-4863 None:intergenic 45.0%
GAGAGAAACTAGTTCACGGA+GGG - tig0018779:4843-4862 Msa1369320:CDS 45.0%
AGAGAAACTAGTTCACGGAG+GGG - tig0018779:4844-4863 Msa1369320:CDS 45.0%
GTGGTGAAGGAAGTAGTAGA+GGG - tig0018779:4881-4900 Msa1369320:CDS 45.0%
GTAGTAGAGGGAAGTCTGTA+AGG - tig0018779:4893-4912 Msa1369320:CDS 45.0%
ACCGGGGTTTATTATCAGAC+CGG - tig0018779:4923-4942 Msa1369320:CDS 45.0%
ACCGGTCTGATAATAAACCC+CGG + tig0018779:4927-4946 None:intergenic 45.0%
GGGTTTATTATCAGACCGGT+GGG - tig0018779:4927-4946 Msa1369320:CDS 45.0%
TACATCTGCTTCAGCAGCTA+CGG - tig0018779:5029-5048 Msa1369320:CDS 45.0%
TAGCCATGGAAGGGCTTACA+CGG + tig0018779:4093-4112 None:intergenic 50.0%
TGCCATGTTGCGTATGCTGT+TGG + tig0018779:4197-4216 None:intergenic 50.0%
AACAGCATACGCAACATGGC+AGG - tig0018779:4196-4215 Msa1369320:CDS 50.0%
AACATGGCAGGAGGTTTAGC+TGG - tig0018779:4208-4227 Msa1369320:CDS 50.0%
CGGTTCTCATACCACTTGTC+CGG - tig0018779:4438-4457 Msa1369320:CDS 50.0%
! ATACCGTGAACCGATTCACC+CGG + tig0018779:4490-4509 None:intergenic 50.0%
GTGAACCTCTTGTACGGTTC+CGG + tig0018779:4654-4673 None:intergenic 50.0%
CGTACAAGAGGTTCACAGTC+TGG - tig0018779:4658-4677 Msa1369320:CDS 50.0%
CAAGAGGTTCACAGTCTGGT+AGG - tig0018779:4662-4681 Msa1369320:CDS 50.0%
!!! GTAGGCTTCGTTGGTTTTCG+AGG - tig0018779:4680-4699 Msa1369320:CDS 50.0%
!! TTTTCGAGGTCTCACTCGAC+CGG - tig0018779:4694-4713 Msa1369320:CDS 50.0%
AACCGGGTGAGAACACTGAA+CGG - tig0018779:4731-4750 Msa1369320:CDS 50.0%
AACCGTTCAGTGTTCTCACC+CGG + tig0018779:4736-4755 None:intergenic 50.0%
!! ACGGTTCACTTTGAGGCTAC+CGG - tig0018779:4750-4769 Msa1369320:CDS 50.0%
CGAGAGAAACTAGTTCACGG+AGG - tig0018779:4842-4861 Msa1369320:CDS 50.0%
ACTACTTCCTTCACCACCAC+CGG + tig0018779:4878-4897 None:intergenic 50.0%
GGTGGTGAAGGAAGTAGTAG+AGG - tig0018779:4880-4899 Msa1369320:CDS 50.0%
GTAGAGGGAAGTCTGTAAGG+CGG - tig0018779:4896-4915 Msa1369320:CDS 50.0%
GGGGTTTATTATCAGACCGG+TGG - tig0018779:4926-4945 Msa1369320:CDS 50.0%
!! AGACCGGTGGGTTTTTACGA+TGG - tig0018779:4939-4958 Msa1369320:CDS 50.0%
GACGCTCTTACAAGGAAAGG+TGG + tig0018779:4967-4986 None:intergenic 50.0%
GACGACGCTCTTACAAGGAA+AGG + tig0018779:4970-4989 None:intergenic 50.0%
TCATCGACGACGCTCTTACA+AGG + tig0018779:4975-4994 None:intergenic 50.0%
!! TTGTAAGAGCGTCGTCGATG+AGG - tig0018779:4974-4993 Msa1369320:CDS 50.0%
TAGCCATGGAAGGGCTTACA+CGG + tig0018779:4093-4112 None:intergenic 50.0%
TGCCATGTTGCGTATGCTGT+TGG + tig0018779:4197-4216 None:intergenic 50.0%
AACAGCATACGCAACATGGC+AGG - tig0018779:4196-4215 Msa1369320:CDS 50.0%
AACATGGCAGGAGGTTTAGC+TGG - tig0018779:4208-4227 Msa1369320:CDS 50.0%
CGGTTCTCATACCACTTGTC+CGG - tig0018779:4438-4457 Msa1369320:CDS 50.0%
! ATACCGTGAACCGATTCACC+CGG + tig0018779:4490-4509 None:intergenic 50.0%
GTGAACCTCTTGTACGGTTC+CGG + tig0018779:4654-4673 None:intergenic 50.0%
CGTACAAGAGGTTCACAGTC+TGG - tig0018779:4658-4677 Msa1369320:CDS 50.0%
CAAGAGGTTCACAGTCTGGT+AGG - tig0018779:4662-4681 Msa1369320:CDS 50.0%
!!! GTAGGCTTCGTTGGTTTTCG+AGG - tig0018779:4680-4699 Msa1369320:CDS 50.0%
!! TTTTCGAGGTCTCACTCGAC+CGG - tig0018779:4694-4713 Msa1369320:CDS 50.0%
AACCGGGTGAGAACACTGAA+CGG - tig0018779:4731-4750 Msa1369320:CDS 50.0%
AACCGTTCAGTGTTCTCACC+CGG + tig0018779:4736-4755 None:intergenic 50.0%
!! ACGGTTCACTTTGAGGCTAC+CGG - tig0018779:4750-4769 Msa1369320:CDS 50.0%
CGAGAGAAACTAGTTCACGG+AGG - tig0018779:4842-4861 Msa1369320:CDS 50.0%
ACTACTTCCTTCACCACCAC+CGG + tig0018779:4878-4897 None:intergenic 50.0%
GGTGGTGAAGGAAGTAGTAG+AGG - tig0018779:4880-4899 Msa1369320:CDS 50.0%
GTAGAGGGAAGTCTGTAAGG+CGG - tig0018779:4896-4915 Msa1369320:CDS 50.0%
GGGGTTTATTATCAGACCGG+TGG - tig0018779:4926-4945 Msa1369320:CDS 50.0%
!! AGACCGGTGGGTTTTTACGA+TGG - tig0018779:4939-4958 Msa1369320:CDS 50.0%
GACGCTCTTACAAGGAAAGG+TGG + tig0018779:4967-4986 None:intergenic 50.0%
GACGACGCTCTTACAAGGAA+AGG + tig0018779:4970-4989 None:intergenic 50.0%
TCATCGACGACGCTCTTACA+AGG + tig0018779:4975-4994 None:intergenic 50.0%
!! TTGTAAGAGCGTCGTCGATG+AGG - tig0018779:4974-4993 Msa1369320:CDS 50.0%
TTGGATTGTGCTCCGGCGAA+GGG + tig0018779:4043-4062 None:intergenic 55.0%
CAACCGTGTAAGCCCTTCCA+TGG - tig0018779:4087-4106 Msa1369320:CDS 55.0%
AAGGTGAATCGCCGCATCGA+CGG + tig0018779:4174-4193 None:intergenic 55.0%
AGCATACGCAACATGGCAGG+AGG - tig0018779:4199-4218 Msa1369320:CDS 55.0%
AGCTCTGCAAACCGGACAAG+TGG + tig0018779:4452-4471 None:intergenic 55.0%
GGTTCCTCAACCGGGTGAAT+CGG - tig0018779:4477-4496 Msa1369320:CDS 55.0%
! TGAACCGATTCACCCGGTTG+AGG + tig0018779:4484-4503 None:intergenic 55.0%
! CAACCGGGTGAATCGGTTCA+CGG - tig0018779:4484-4503 Msa1369320:CDS 55.0%
CTGTAAGCCAGACGCTGAAC+CGG - tig0018779:4632-4651 Msa1369320:CDS 55.0%
CTGAACCGGAACCGTACAAG+AGG - tig0018779:4646-4665 Msa1369320:CDS 55.0%
CACAGTCTGGTAGGCTTCGT+TGG - tig0018779:4671-4690 Msa1369320:CDS 55.0%
GTCTCACTCGACCGGTCATT+CGG - tig0018779:4702-4721 Msa1369320:CDS 55.0%
CGGTTGAACCACCGAATGAC+CGG + tig0018779:4716-4735 None:intergenic 55.0%
! CGGTCATTCGGTGGTTCAAC+CGG - tig0018779:4714-4733 Msa1369320:CDS 55.0%
! GGTCATTCGGTGGTTCAACC+GGG - tig0018779:4715-4734 Msa1369320:CDS 55.0%
! TGAGGCTACCGGTTGAAGTG+AGG - tig0018779:4761-4780 Msa1369320:CDS 55.0%
TCACGGAGGGGTTATCGAAC+CGG - tig0018779:4856-4875 Msa1369320:CDS 55.0%
! TATCGAACCGGTGGTGGTGA+AGG - tig0018779:4868-4887 Msa1369320:CDS 55.0%
AGGGAAGTCTGTAAGGCGGT+TGG - tig0018779:4900-4919 Msa1369320:CDS 55.0%
AGTCTGTAAGGCGGTTGGAC+CGG - tig0018779:4905-4924 Msa1369320:CDS 55.0%
GCGCCATCGTAAAAACCCAC+CGG + tig0018779:4945-4964 None:intergenic 55.0%
GTCGTCGATGAGGTCACCAA+GGG - tig0018779:4984-5003 Msa1369320:CDS 55.0%
!! GTGGCTAGTAGCTCTGGTGA+AGG - tig0018779:5006-5025 Msa1369320:CDS 55.0%
ATCTGCTTCAGCAGCTACGG+CGG - tig0018779:5032-5051 Msa1369320:CDS 55.0%
TTGGATTGTGCTCCGGCGAA+GGG + tig0018779:4043-4062 None:intergenic 55.0%
CAACCGTGTAAGCCCTTCCA+TGG - tig0018779:4087-4106 Msa1369320:CDS 55.0%
AAGGTGAATCGCCGCATCGA+CGG + tig0018779:4174-4193 None:intergenic 55.0%
AGCATACGCAACATGGCAGG+AGG - tig0018779:4199-4218 Msa1369320:CDS 55.0%
AGCTCTGCAAACCGGACAAG+TGG + tig0018779:4452-4471 None:intergenic 55.0%
GGTTCCTCAACCGGGTGAAT+CGG - tig0018779:4477-4496 Msa1369320:CDS 55.0%
! TGAACCGATTCACCCGGTTG+AGG + tig0018779:4484-4503 None:intergenic 55.0%
! CAACCGGGTGAATCGGTTCA+CGG - tig0018779:4484-4503 Msa1369320:CDS 55.0%
CTGTAAGCCAGACGCTGAAC+CGG - tig0018779:4632-4651 Msa1369320:CDS 55.0%
CTGAACCGGAACCGTACAAG+AGG - tig0018779:4646-4665 Msa1369320:CDS 55.0%
CACAGTCTGGTAGGCTTCGT+TGG - tig0018779:4671-4690 Msa1369320:CDS 55.0%
GTCTCACTCGACCGGTCATT+CGG - tig0018779:4702-4721 Msa1369320:CDS 55.0%
CGGTTGAACCACCGAATGAC+CGG + tig0018779:4716-4735 None:intergenic 55.0%
! CGGTCATTCGGTGGTTCAAC+CGG - tig0018779:4714-4733 Msa1369320:CDS 55.0%
! GGTCATTCGGTGGTTCAACC+GGG - tig0018779:4715-4734 Msa1369320:CDS 55.0%
! TGAGGCTACCGGTTGAAGTG+AGG - tig0018779:4761-4780 Msa1369320:CDS 55.0%
TCACGGAGGGGTTATCGAAC+CGG - tig0018779:4856-4875 Msa1369320:CDS 55.0%
! TATCGAACCGGTGGTGGTGA+AGG - tig0018779:4868-4887 Msa1369320:CDS 55.0%
AGGGAAGTCTGTAAGGCGGT+TGG - tig0018779:4900-4919 Msa1369320:CDS 55.0%
AGTCTGTAAGGCGGTTGGAC+CGG - tig0018779:4905-4924 Msa1369320:CDS 55.0%
GCGCCATCGTAAAAACCCAC+CGG + tig0018779:4945-4964 None:intergenic 55.0%
GTCGTCGATGAGGTCACCAA+GGG - tig0018779:4984-5003 Msa1369320:CDS 55.0%
!! GTGGCTAGTAGCTCTGGTGA+AGG - tig0018779:5006-5025 Msa1369320:CDS 55.0%
ATCTGCTTCAGCAGCTACGG+CGG - tig0018779:5032-5051 Msa1369320:CDS 55.0%
AGGGGACGCCGGAGAAAAAG+AGG + tig0018779:4024-4043 None:intergenic 60.0%
TGGATTGTGCTCCGGCGAAG+GGG + tig0018779:4042-4061 None:intergenic 60.0%
GTTGGATTGTGCTCCGGCGA+AGG + tig0018779:4044-4063 None:intergenic 60.0%
! AGCGCGTGGTCTTGACGCAT+CGG - tig0018779:4246-4265 Msa1369320:CDS 60.0%
TACGGTTCCGGTTCAGCGTC+TGG + tig0018779:4642-4661 None:intergenic 60.0%
TCACTCGACCGGTCATTCGG+TGG - tig0018779:4705-4724 Msa1369320:CDS 60.0%
AGGGGTTATCGAACCGGTGG+TGG - tig0018779:4862-4881 Msa1369320:CDS 60.0%
GTCTGTAAGGCGGTTGGACC+GGG - tig0018779:4906-4925 Msa1369320:CDS 60.0%
TCTGTAAGGCGGTTGGACCG+GGG - tig0018779:4907-4926 Msa1369320:CDS 60.0%
CGTCGTCGATGAGGTCACCA+AGG - tig0018779:4983-5002 Msa1369320:CDS 60.0%
GTCGATGAGGTCACCAAGGG+TGG - tig0018779:4987-5006 Msa1369320:CDS 60.0%
CCAGAGCTACTAGCCACCCT+TGG + tig0018779:5003-5022 None:intergenic 60.0%
CCAAGGGTGGCTAGTAGCTC+TGG - tig0018779:5000-5019 Msa1369320:CDS 60.0%
AGGGGACGCCGGAGAAAAAG+AGG + tig0018779:4024-4043 None:intergenic 60.0%
TGGATTGTGCTCCGGCGAAG+GGG + tig0018779:4042-4061 None:intergenic 60.0%
GTTGGATTGTGCTCCGGCGA+AGG + tig0018779:4044-4063 None:intergenic 60.0%
! AGCGCGTGGTCTTGACGCAT+CGG - tig0018779:4246-4265 Msa1369320:CDS 60.0%
TACGGTTCCGGTTCAGCGTC+TGG + tig0018779:4642-4661 None:intergenic 60.0%
TCACTCGACCGGTCATTCGG+TGG - tig0018779:4705-4724 Msa1369320:CDS 60.0%
AGGGGTTATCGAACCGGTGG+TGG - tig0018779:4862-4881 Msa1369320:CDS 60.0%
GTCTGTAAGGCGGTTGGACC+GGG - tig0018779:4906-4925 Msa1369320:CDS 60.0%
TCTGTAAGGCGGTTGGACCG+GGG - tig0018779:4907-4926 Msa1369320:CDS 60.0%
CGTCGTCGATGAGGTCACCA+AGG - tig0018779:4983-5002 Msa1369320:CDS 60.0%
GTCGATGAGGTCACCAAGGG+TGG - tig0018779:4987-5006 Msa1369320:CDS 60.0%
CCAGAGCTACTAGCCACCCT+TGG + tig0018779:5003-5022 None:intergenic 60.0%
CCAAGGGTGGCTAGTAGCTC+TGG - tig0018779:5000-5019 Msa1369320:CDS 60.0%
CGGAGGGGTTATCGAACCGG+TGG - tig0018779:4859-4878 Msa1369320:CDS 65.0%
TGCTTCAGCAGCTACGGCGG+CGG - tig0018779:5035-5054 Msa1369320:CDS 65.0%
CGGAGGGGTTATCGAACCGG+TGG - tig0018779:4859-4878 Msa1369320:CDS 65.0%
TGCTTCAGCAGCTACGGCGG+CGG - tig0018779:5035-5054 Msa1369320:CDS 65.0%
TTCTCCGGCGTCCCCTTCGC+CGG - tig0018779:4028-4047 Msa1369320:CDS 70.0%
!! CGGCGGTTGTTGACTCCCCG+CGG - tig0018779:5052-5071 Msa1369320:CDS 70.0%
!! TGTTGACTCCCCGCGGCCAC+CGG - tig0018779:5059-5078 Msa1369320:CDS 70.0%
TTCTCCGGCGTCCCCTTCGC+CGG - tig0018779:4028-4047 Msa1369320:CDS 70.0%
!! CGGCGGTTGTTGACTCCCCG+CGG - tig0018779:5052-5071 Msa1369320:CDS 70.0%
!! TGTTGACTCCCCGCGGCCAC+CGG - tig0018779:5059-5078 Msa1369320:CDS 70.0%
TGCTCCGGCGAAGGGGACGC+CGG + tig0018779:4035-4054 None:intergenic 75.0%
CGTTCACGACGCGCAGCGCG+TGG - tig0018779:4232-4251 Msa1369320:CDS 75.0%
TGCTCCGGCGAAGGGGACGC+CGG + tig0018779:4035-4054 None:intergenic 75.0%
CGTTCACGACGCGCAGCGCG+TGG - tig0018779:4232-4251 Msa1369320:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0018779 gene 3965 5086 3965 ID=Msa1369320;Name=Msa1369320
tig0018779 mRNA 3965 5086 3965 ID=Msa1369320-mRNA-1;Parent=Msa1369320;Name=Msa1369320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|373
tig0018779 exon 3965 5086 3965 ID=Msa1369320-mRNA-1:exon:1069;Parent=Msa1369320-mRNA-1
tig0018779 CDS 3965 5086 3965 ID=Msa1369320-mRNA-1:cds;Parent=Msa1369320-mRNA-1
Gene Sequence

>Msa1369320

ATGGATAACTCATATCAAAATGACAAAACTATCCTTGTGTGTTTTTTCTTGTTCTTCCTCTTTTTCTCCGGCGTCCCCTTCGCCGGAGCACAATCCAACGAAAACACAAACGACTCTTATTACAACCGTGTAAGCCCTTCCATGGCTATAATAATCGTAATTCTCATCGCTGCTCTTTTTCTCATGGGTTTCTTCTCAATCTACATCCGTCGATGCGGCGATTCACCTTCCAACAGCATACGCAACATGGCAGGAGGTTTAGCTGGACGTTCACGACGCGCAGCGCGTGGTCTTGACGCATCGGTGATCGCGACGTTCCCGATCTTTGAATACTCAGCTGTGAAGATTCATAAAATCGGAAAAGGCGCGTTGGAGTGTGCTGTTTGTTTGAACGAGTTTGAAGAGAGTGAAACGCTGCGTTTGATTCCAAAGTGTGATCATGTTTTTCACCCTGAGTGTATTGATGAATGGCTCGGTTCTCATACCACTTGTCCGGTTTGCAGAGCTAATTTGGTTCCTCAACCGGGTGAATCGGTTCACGGTATCCCGTCGATTAATACCGAACCACAAGATATTGAAGCTCAAAACGAAGCTGTTGAATCGGTTCATGAACATCAAAACGCGGACGGTTCTGTAAAAGTCGAGCCAACTGAACCAGAAGTGTTGACTGTAAGCCAGACGCTGAACCGGAACCGTACAAGAGGTTCACAGTCTGGTAGGCTTCGTTGGTTTTCGAGGTCTCACTCGACCGGTCATTCGGTGGTTCAACCGGGTGAGAACACTGAACGGTTCACTTTGAGGCTACCGGTTGAAGTGAGGAAACAAATACTACTACAGAACCCGGAATTACATAGAGCTAGAAGCTTGGTTGTGTTGCCGAGAGAAACTAGTTCACGGAGGGGTTATCGAACCGGTGGTGGTGAAGGAAGTAGTAGAGGGAAGTCTGTAAGGCGGTTGGACCGGGGTTTATTATCAGACCGGTGGGTTTTTACGATGGCGCCACCTTTCCTTGTAAGAGCGTCGTCGATGAGGTCACCAAGGGTGGCTAGTAGCTCTGGTGAAGGTACATCTGCTTCAGCAGCTACGGCGGCGGTTGTTGACTCCCCGCGGCCACCGGTTTAA
Protein sequence

>Msa1369320

MDNSYQNDKTILVCFFLFFLFFSGVPFAGAQSNENTNDSYYNRVSPSMAIIIVILIAALFLMGFFSIYIRRCGDSPSNSIRNMAGGLAGRSRRAARGLDASVIATFPIFEYSAVKIHKIGKGALECAVCLNEFEESETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVHGIPSINTEPQDIEAQNEAVESVHEHQNADGSVKVEPTEPEVLTVSQTLNRNRTRGSQSGRLRWFSRSHSTGHSVVQPGENTERFTLRLPVEVRKQILLQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRRLDRGLLSDRWVFTMAPPFLVRASSMRSPRVASSSGEGTSASAATAAVVDSPRPPV*