Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491030 | QJS95126.1 | 87.912 | 364 | 12 | 2 | 1 | 332 | 1 | 364 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491030 | sp|Q84MZ4|TF3A_ARATH | 46.883 | 401 | 129 | 4 | 2 | 319 | 3 | 402 | 3.18e-116 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491030 | A0A6M4W3T1 | 87.912 | 364 | 12 | 2 | 1 | 332 | 1 | 364 | 0.0 | 642 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0491030 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0112560 | Msa0491030 | 0.808753 | 2.652159e-50 | -8.615850e-47 |
| Msa0128020 | Msa0491030 | 0.818406 | 1.993124e-52 | -8.615850e-47 |
| Msa0150820 | Msa0491030 | 0.802298 | 5.995618e-49 | -8.615850e-47 |
| Msa0379640 | Msa0491030 | 0.800384 | 1.477989e-48 | -8.615850e-47 |
| Msa0280090 | Msa0491030 | 0.806629 | 7.497560e-50 | -8.615850e-47 |
| Msa0491030 | Msa0604510 | 0.810335 | 1.213295e-50 | -8.615850e-47 |
| Msa0491030 | Msa0607050 | 0.801803 | 7.578857e-49 | -8.615850e-47 |
| Msa0491030 | Msa0610430 | 0.816687 | 4.862272e-52 | -8.615850e-47 |
| Msa0491030 | Msa0690150 | 0.809041 | 2.301849e-50 | -8.615850e-47 |
| Msa0491030 | Msa0711780 | 0.806723 | 7.161301e-50 | -8.615850e-47 |
| Msa0491030 | Msa0794670 | 0.801873 | 7.330905e-49 | -8.615850e-47 |
| Msa0491030 | Msa0993290 | 0.813184 | 2.910410e-51 | -8.615850e-47 |
| Msa0491030 | Msa0993600 | 0.809550 | 1.790589e-50 | -8.615850e-47 |
| Msa0491030 | Msa1003620 | 0.803873 | 2.832425e-49 | -8.615850e-47 |
| Msa0491030 | Msa1082500 | 0.801112 | 1.049941e-48 | -8.615850e-47 |
| Msa0491030 | Msa1098420 | 0.800088 | 1.698334e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491030 | MtrunA17_Chr3g0082161 | 85.455 | 275 | 9 | 1 | 89 | 332 | 10 | 284 | 1.38e-169 | 473 |
| Msa0491030 | MtrunA17_Chr1g0164511 | 84.727 | 275 | 11 | 1 | 89 | 332 | 10 | 284 | 1.81e-168 | 469 |
| Msa0491030 | MtrunA17_Chr1g0164501 | 83.645 | 214 | 25 | 2 | 119 | 332 | 16 | 219 | 1.37e-126 | 361 |
| Msa0491030 | MtrunA17_Chr8g0353321 | 57.576 | 264 | 80 | 2 | 88 | 320 | 36 | 298 | 1.49e-106 | 313 |
| Msa0491030 | MtrunA17_Chr3g0082151 | 76.667 | 60 | 10 | 2 | 46 | 104 | 1 | 57 | 2.30e-22 | 89.0 |
| Msa0491030 | MtrunA17_Chr1g0164521 | 76.667 | 60 | 10 | 2 | 46 | 104 | 1 | 57 | 2.30e-22 | 89.0 |
| Msa0491030 | MtrunA17_Chr2g0277381 | 26.217 | 267 | 168 | 8 | 67 | 325 | 82 | 327 | 1.06e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491030 | AT1G72050.2 | 46.883 | 401 | 129 | 4 | 2 | 319 | 3 | 402 | 3.24e-117 | 345 |
| Msa0491030 | AT1G72050.3 | 46.883 | 401 | 129 | 4 | 2 | 319 | 18 | 417 | 4.39e-117 | 345 |
| Msa0491030 | AT1G72050.1 | 46.497 | 314 | 85 | 4 | 88 | 319 | 2 | 314 | 2.98e-88 | 268 |
| Msa0491030 | AT1G72050.4 | 42.391 | 276 | 77 | 2 | 88 | 281 | 2 | 277 | 9.18e-69 | 218 |
Find 82 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTAATATCTCTGAATTT+TGG | 0.068375 | 3_4:+13084094 | None:intergenic |
| AATTGATGTGGGATGTAATT+AGG | 0.159176 | 3_4:+13084029 | None:intergenic |
| AGGATTTAACATGAGCTTTA+AGG | 0.225594 | 3_4:+13082149 | None:intergenic |
| ATTGATGTGGGATGTAATTA+GGG | 0.319248 | 3_4:+13084030 | None:intergenic |
| AATTGACATTTAATTGCTTC+GGG | 0.328016 | 3_4:+13082034 | None:intergenic |
| AAATTGACATTTAATTGCTT+CGG | 0.336032 | 3_4:+13082033 | None:intergenic |
| GTGCAGGATTGTCAGTAAAA+TGG | 0.338868 | 3_4:-13081482 | Msa0491030:exon |
| AATTGCTTCGGGTGAATTGC+TGG | 0.343507 | 3_4:+13082045 | None:intergenic |
| AAGAAGCTGATGAAGAATTC+AGG | 0.351513 | 3_4:-13081607 | Msa0491030:CDS |
| ATTCTTCCATTGTTGATAGA+AGG | 0.352159 | 3_4:+13084137 | None:intergenic |
| GCAAACCTCATCCCACAATT+AGG | 0.363573 | 3_4:+13081815 | None:intergenic |
| CCACAGTAGAAATGTTAGTT+AGG | 0.390467 | 3_4:-13081547 | Msa0491030:CDS |
| AATGAATGAGTGAGGCTACT+AGG | 0.392977 | 3_4:+13084209 | None:intergenic |
| AGTAAAATGGATCATACTAT+AGG | 0.403153 | 3_4:-13081469 | Msa0491030:exon |
| ATCTACAGATACCGCAGAAT+TGG | 0.415201 | 3_4:+13084062 | None:intergenic |
| GTGTGTGGGTTTCCTAATTG+TGG | 0.422735 | 3_4:-13081827 | Msa0491030:CDS |
| TCGATCCTTCCAGTGTTTGT+AGG | 0.422844 | 3_4:+13084183 | None:intergenic |
| TTTCTCTTCACCCCTCCCCT+TGG | 0.432023 | 3_4:+13081578 | None:intergenic |
| AGCAATTAAATGTCAATTTG+AGG | 0.438471 | 3_4:-13082029 | Msa0491030:CDS |
| GCAATTAAATGTCAATTTGA+GGG | 0.445979 | 3_4:-13082028 | Msa0491030:CDS |
| AGAGAACTTGTTATTCGTGC+AGG | 0.446937 | 3_4:-13081498 | Msa0491030:CDS |
| TTCAAACCACCCTCTGATTG+AGG | 0.447189 | 3_4:+13083568 | None:intergenic |
| ACAATACAATCGATCAAAAC+AGG | 0.447671 | 3_4:+13081428 | None:intergenic |
| GGAATTGTTGTGAAAATTGA+GGG | 0.450105 | 3_4:+13084158 | None:intergenic |
| CCTATTGAGAATTGCAAAAG+TGG | 0.452860 | 3_4:-13082514 | Msa0491030:CDS |
| ATGTAGCCTTGAAGATTGTA+AGG | 0.466096 | 3_4:-13082605 | Msa0491030:CDS |
| TGTGTGGGTTTCCTAATTGT+GGG | 0.470341 | 3_4:-13081826 | Msa0491030:CDS |
| ATGTGACCTGCGACACTTGT+GGG | 0.475355 | 3_4:-13082117 | Msa0491030:CDS |
| AAATTTATAGTCATGAATGA+TGG | 0.482934 | 3_4:-13081352 | Msa0491030:three_prime_UTR |
| AGGAATTGTTGTGAAAATTG+AGG | 0.487217 | 3_4:+13084157 | None:intergenic |
| CAGGTCAAGGCCAAGGGGAG+GGG | 0.490449 | 3_4:-13081588 | Msa0491030:CDS |
| AGCTCGCCTTACAATCTTCA+AGG | 0.496505 | 3_4:+13082599 | None:intergenic |
| TCAGGTCAAGGCCAAGGGGA+GGG | 0.518065 | 3_4:-13081589 | Msa0491030:CDS |
| TTCATTCTGCCTACAAACAC+TGG | 0.520115 | 3_4:-13084192 | Msa0491030:five_prime_UTR |
| TCTTCAAGGCTACATACAAA+TGG | 0.524961 | 3_4:+13082613 | None:intergenic |
| AACATGAGCTTTAAGGCACT+CGG | 0.529952 | 3_4:+13082156 | None:intergenic |
| CAAGTAAAGCCGTTTGTGTG+TGG | 0.530955 | 3_4:-13081842 | Msa0491030:CDS |
| GGTTTCCTAATTGTGGGATG+AGG | 0.531394 | 3_4:-13081820 | Msa0491030:CDS |
| ATGAATGAGTGAGGCTACTA+GGG | 0.532513 | 3_4:+13084210 | None:intergenic |
| CTTAGTCCCACAAGTGTCGC+AGG | 0.537296 | 3_4:+13082111 | None:intergenic |
| TGTCGCAGGTCACATATTGA+TGG | 0.542996 | 3_4:+13082125 | None:intergenic |
| TGAAACTGAACCTCAATCAG+AGG | 0.544355 | 3_4:-13083578 | Msa0491030:CDS |
| AAGAATTCAGGTCAAGGCCA+AGG | 0.544513 | 3_4:-13081595 | Msa0491030:CDS |
| AAGTAAAGCCGTTTGTGTGT+GGG | 0.550967 | 3_4:-13081841 | Msa0491030:CDS |
| CGTCACCTTCTACAACATCA+AGG | 0.557665 | 3_4:-13082553 | Msa0491030:CDS |
| TTAGGAAACCCACACACAAA+CGG | 0.558755 | 3_4:+13081833 | None:intergenic |
| CTAACTAACATTTCTACTGT+GGG | 0.561562 | 3_4:+13081548 | None:intergenic |
| AGTTCTCTAATTGACTAGGT+GGG | 0.566365 | 3_4:+13081513 | None:intergenic |
| ACTATAGGCTAAAAGTTATG+TGG | 0.575229 | 3_4:-13081454 | Msa0491030:three_prime_UTR |
| CCTAACTAACATTTCTACTG+TGG | 0.575540 | 3_4:+13081547 | None:intergenic |
| CCACATCAATTCTGAACACA+AGG | 0.577487 | 3_4:-13084017 | Msa0491030:intron |
| GCAGGTCACATATTGATGGC+AGG | 0.577986 | 3_4:+13082129 | None:intergenic |
| CGCTATTACTGCCAATTCTG+CGG | 0.581521 | 3_4:-13084073 | Msa0491030:CDS |
| TTCAGGTCAAGGCCAAGGGG+AGG | 0.583372 | 3_4:-13081590 | Msa0491030:CDS |
| AAGTTCTCTAATTGACTAGG+TGG | 0.584481 | 3_4:+13081512 | None:intergenic |
| AGAATTCAGGTCAAGGCCAA+GGG | 0.585579 | 3_4:-13081594 | Msa0491030:CDS |
| GAAGTGGTGTGCTTAGAGCC+TGG | 0.587135 | 3_4:-13082202 | Msa0491030:CDS |
| TAAGGCGAGCTACAGAAGAA+AGG | 0.590587 | 3_4:-13082587 | Msa0491030:CDS |
| ACAATTCCTTCTATCAACAA+TGG | 0.591925 | 3_4:-13084143 | Msa0491030:exon |
| TAGGCTTGATACAATTGAAG+TGG | 0.594031 | 3_4:-13082218 | Msa0491030:CDS |
| CCTTGTGTTCAGAATTGATG+TGG | 0.601822 | 3_4:+13084017 | None:intergenic |
| AACTGAAGAAGAATATGAAG+AGG | 0.602793 | 3_4:-13082087 | Msa0491030:CDS |
| TAATCTTCATAAGCATGAGA+AGG | 0.603913 | 3_4:-13081876 | Msa0491030:CDS |
| TTCTGCCTACAAACACTGGA+AGG | 0.607016 | 3_4:-13084188 | Msa0491030:five_prime_UTR |
| TAATTGAACAAATACCTCGA+GGG | 0.608678 | 3_4:+13083471 | None:intergenic |
| GTTCTCTAATTGACTAGGTG+GGG | 0.608887 | 3_4:+13081514 | None:intergenic |
| GTCACCTTCTACAACATCAA+GGG | 0.613362 | 3_4:-13082552 | Msa0491030:CDS |
| TTTGAAAGCTAATACTTGTG+AGG | 0.617741 | 3_4:-13083551 | Msa0491030:CDS |
| CTGATGAAGAATTCAGGTCA+AGG | 0.636136 | 3_4:-13081601 | Msa0491030:CDS |
| ACTAACATTTCTACTGTGGG+AGG | 0.639382 | 3_4:+13081551 | None:intergenic |
| AGTTCTACCCCTCCTCGTAG+TGG | 0.640750 | 3_4:-13082439 | Msa0491030:intron |
| GAAACTGAACCTCAATCAGA+GGG | 0.642449 | 3_4:-13083577 | Msa0491030:CDS |
| CTTGTGTTCAGAATTGATGT+GGG | 0.647147 | 3_4:+13084018 | None:intergenic |
| AATTGCTGGCTTCATGTGTG+CGG | 0.654316 | 3_4:+13082059 | None:intergenic |
| AACAAGTTCTCTAATTGACT+AGG | 0.656480 | 3_4:+13081509 | None:intergenic |
| GAATTGTTGTGAAAATTGAG+GGG | 0.663373 | 3_4:+13084159 | None:intergenic |
| TATGTGACCTGCGACACTTG+TGG | 0.670362 | 3_4:-13082118 | Msa0491030:CDS |
| GCTAATACTTGTGAGGAATG+TGG | 0.673142 | 3_4:-13083544 | Msa0491030:CDS |
| GTAGGCAGAATGAATGAGTG+AGG | 0.676225 | 3_4:+13084201 | None:intergenic |
| GAATTCAGGTCAAGGCCAAG+GGG | 0.693128 | 3_4:-13081593 | Msa0491030:CDS |
| ACTGAACCTCAATCAGAGGG+TGG | 0.697506 | 3_4:-13083574 | Msa0491030:CDS |
| TATGCAAAGTCATTCCCTCG+AGG | 0.752078 | 3_4:-13083485 | Msa0491030:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATTACTAATTGTTT+AGG | - | chr3_4:13081796-13081815 | Msa0491030:CDS | 10.0% |
| !! | TTATACTTTATAATTCATTT+AGG | - | chr3_4:13082166-13082185 | Msa0491030:CDS | 10.0% |
| !! | AAAATATGAATTTGTATATT+TGG | - | chr3_4:13082526-13082545 | Msa0491030:CDS | 10.0% |
| !! | AATGATCTATAAAATAATTA+TGG | - | chr3_4:13082640-13082659 | Msa0491030:intron | 10.0% |
| !! | TAAAAAATGTAACAAAAATT+TGG | + | chr3_4:13083614-13083633 | None:intergenic | 10.0% |
| !!! | TGTAGAAATTTTATATATTT+AGG | - | chr3_4:13084137-13084156 | Msa0491030:exon | 10.0% |
| !!! | ATTTTATATATTTAGGAATT+AGG | - | chr3_4:13084144-13084163 | Msa0491030:exon | 10.0% |
| !!! | AGTTTTAGTTTTATGAATTT+AGG | - | chr3_4:13081770-13081789 | Msa0491030:CDS | 15.0% |
| !!! | GTTTTAGTTTTATGAATTTA+GGG | - | chr3_4:13081771-13081790 | Msa0491030:CDS | 15.0% |
| !!! | ATTTTTTTGATGTGAATTTT+AGG | - | chr3_4:13081920-13081939 | Msa0491030:intron | 15.0% |
| !! | ATAAACTAGTTAAATTTAGA+AGG | + | chr3_4:13082150-13082169 | None:intergenic | 15.0% |
| !! | TCTTTCATAAATCTAAATAA+AGG | + | chr3_4:13083267-13083286 | None:intergenic | 15.0% |
| !! | TCAAGATTTATTTCATATAT+AGG | - | chr3_4:13083904-13083923 | Msa0491030:intron | 15.0% |
| !! | CAAGATTTATTTCATATATA+GGG | - | chr3_4:13083905-13083924 | Msa0491030:intron | 15.0% |
| !!! | GATCTATAGTTTTAACTAAA+TGG | - | chr3_4:13081576-13081595 | Msa0491030:CDS | 20.0% |
| !!! | ACTCAAAATTTGTTCATTTT+CGG | + | chr3_4:13081617-13081636 | None:intergenic | 20.0% |
| !!! | ATGAACAAATTTTGAGTATT+AGG | - | chr3_4:13081620-13081639 | Msa0491030:CDS | 20.0% |
| !!! | TGAACAAATTTTGAGTATTA+GGG | - | chr3_4:13081621-13081640 | Msa0491030:intron | 20.0% |
| !! | TATAAACAAGTTAAATCTAG+AGG | + | chr3_4:13082258-13082277 | None:intergenic | 20.0% |
| !!! | TGTTTTTGATAAAAACACTA+TGG | - | chr3_4:13082333-13082352 | Msa0491030:intron | 20.0% |
| !! | TATCATTAAATTCGTTTGTA+TGG | - | chr3_4:13082439-13082458 | Msa0491030:intron | 20.0% |
| !!! | ATATGCATGTTTTATATGTT+TGG | - | chr3_4:13082477-13082496 | Msa0491030:CDS | 20.0% |
| !!! | ATGTTTTATATGTTTGGTTT+TGG | - | chr3_4:13082483-13082502 | Msa0491030:CDS | 20.0% |
| !!! | TGAATTTGTATATTTGGTTT+TGG | - | chr3_4:13082532-13082551 | Msa0491030:CDS | 20.0% |
| !!! | TTTTTAAAGAAATAGAACTC+TGG | + | chr3_4:13082559-13082578 | None:intergenic | 20.0% |
| !! | AAATTGACATTTAATTGCTT+CGG | + | chr3_4:13083513-13083532 | None:intergenic | 20.0% |
| !! | ATATATGAAATAAACAAGGA+CGG | + | chr3_4:13083818-13083837 | None:intergenic | 20.0% |
| !!! | TCCTTGTTTATTTCATATAT+AGG | - | chr3_4:13083818-13083837 | Msa0491030:intron | 20.0% |
| !!! | CCTTGTTTATTTCATATATA+GGG | - | chr3_4:13083819-13083838 | Msa0491030:intron | 20.0% |
| !! | AAATTTATAGTCATGAATGA+TGG | - | chr3_4:13084191-13084210 | Msa0491030:five_prime_UTR | 20.0% |
| !! | GTCTAATATCTCTGAATTTT+GGG | + | chr3_4:13081451-13081470 | None:intergenic | 25.0% |
| !!! | TATTAGGGTTTTGTTTGTTA+AGG | - | chr3_4:13081636-13081655 | Msa0491030:intron | 25.0% |
| ! | GAAGAAAAGCAAAACAATTA+GGG | + | chr3_4:13081680-13081699 | None:intergenic | 25.0% |
| ! | TGAAGAAAAGCAAAACAATT+AGG | + | chr3_4:13081681-13081700 | None:intergenic | 25.0% |
| ! | TTATGCAATTATAGCTTCTA+TGG | - | chr3_4:13081849-13081868 | Msa0491030:CDS | 25.0% |
| !! | TTTTTGATGTGAATTTTAGG+AGG | - | chr3_4:13081923-13081942 | Msa0491030:intron | 25.0% |
| ! | TGTTGTGTATACTTGAATAT+TGG | - | chr3_4:13082230-13082249 | Msa0491030:intron | 25.0% |
| ! | GTTGTGTATACTTGAATATT+GGG | - | chr3_4:13082231-13082250 | Msa0491030:intron | 25.0% |
| ! | TTGTGTATACTTGAATATTG+GGG | - | chr3_4:13082232-13082251 | Msa0491030:intron | 25.0% |
| ! | GTTATTGTTGAAATTCAGTA+AGG | - | chr3_4:13082406-13082425 | Msa0491030:intron | 25.0% |
| !!! | TTTTTTAAGAAAAAGAACCC+TGG | + | chr3_4:13082510-13082529 | None:intergenic | 25.0% |
| ! | AGTTGACAAAATTGAAAGAA+AGG | + | chr3_4:13083230-13083249 | None:intergenic | 25.0% |
| ! | AATTGACATTTAATTGCTTC+GGG | + | chr3_4:13083512-13083531 | None:intergenic | 25.0% |
| ! | AGCAATTAAATGTCAATTTG+AGG | - | chr3_4:13083514-13083533 | Msa0491030:CDS | 25.0% |
| ! | GCAATTAAATGTCAATTTGA+GGG | - | chr3_4:13083515-13083534 | Msa0491030:CDS | 25.0% |
| !!! | CATTTTTTAACTTCCAATTG+TGG | - | chr3_4:13083625-13083644 | Msa0491030:intron | 25.0% |
| ! | CCCTATATATGAAATAAACA+AGG | + | chr3_4:13083822-13083841 | None:intergenic | 25.0% |
| ! | AGTAAAATGGATCATACTAT+AGG | - | chr3_4:13084074-13084093 | Msa0491030:CDS | 25.0% |
| GAATTGTTGTGAAAATTGAG+GGG | + | chr3_4:13081387-13081406 | None:intergenic | 30.0% | |
| GGAATTGTTGTGAAAATTGA+GGG | + | chr3_4:13081388-13081407 | None:intergenic | 30.0% | |
| AGGAATTGTTGTGAAAATTG+AGG | + | chr3_4:13081389-13081408 | None:intergenic | 30.0% | |
| ACAATTCCTTCTATCAACAA+TGG | - | chr3_4:13081400-13081419 | Msa0491030:three_prime_UTR | 30.0% | |
| ! | ATTCTTCCATTGTTGATAGA+AGG | + | chr3_4:13081409-13081428 | None:intergenic | 30.0% |
| !!! | TTTTGGGATTTCATCGTTTT+GGG | + | chr3_4:13081435-13081454 | None:intergenic | 30.0% |
| !!! | ATTTTGGGATTTCATCGTTT+TGG | + | chr3_4:13081436-13081455 | None:intergenic | 30.0% |
| ! | CGTCTAATATCTCTGAATTT+TGG | + | chr3_4:13081452-13081471 | None:intergenic | 30.0% |
| !!! | GGATGTAATTAGGGTTTTTT+TGG | + | chr3_4:13081507-13081526 | None:intergenic | 30.0% |
| ATTGATGTGGGATGTAATTA+GGG | + | chr3_4:13081516-13081535 | None:intergenic | 30.0% | |
| AATTGATGTGGGATGTAATT+AGG | + | chr3_4:13081517-13081536 | None:intergenic | 30.0% | |
| !! | TTTCTACAGTTTTAACCCAA+TGG | - | chr3_4:13081713-13081732 | Msa0491030:intron | 30.0% |
| !! | TTCTACAGTTTTAACCCAAT+GGG | - | chr3_4:13081714-13081733 | Msa0491030:intron | 30.0% |
| AAGAAATTGAGTAACCCATT+GGG | + | chr3_4:13081731-13081750 | None:intergenic | 30.0% | |
| TAAGAAATTGAGTAACCCAT+TGG | + | chr3_4:13081732-13081751 | None:intergenic | 30.0% | |
| TATGTGTGATTGATTGTGTA+TGG | - | chr3_4:13081877-13081896 | Msa0491030:CDS | 30.0% | |
| TTTGAAAGCTAATACTTGTG+AGG | - | chr3_4:13081992-13082011 | Msa0491030:intron | 30.0% | |
| TAATTGAACAAATACCTCGA+GGG | + | chr3_4:13082075-13082094 | None:intergenic | 30.0% | |
| ATAATTGAACAAATACCTCG+AGG | + | chr3_4:13082076-13082095 | None:intergenic | 30.0% | |
| TTGTTGAAATTCAGTAAGGA+TGG | - | chr3_4:13082410-13082429 | Msa0491030:intron | 30.0% | |
| !! | CTAAAGATACATGTTTTTGC+AGG | - | chr3_4:13082595-13082614 | Msa0491030:CDS | 30.0% |
| ! | ACATTATAGTGTGAAAGCAT+TGG | - | chr3_4:13082663-13082682 | Msa0491030:intron | 30.0% |
| AGGATTTAACATGAGCTTTA+AGG | + | chr3_4:13083397-13083416 | None:intergenic | 30.0% | |
| AACTGAAGAAGAATATGAAG+AGG | - | chr3_4:13083456-13083475 | Msa0491030:intron | 30.0% | |
| TAATCTTCATAAGCATGAGA+AGG | - | chr3_4:13083667-13083686 | Msa0491030:intron | 30.0% | |
| ! | TTTGCAGTAAGATGTTTTGT+CGG | + | chr3_4:13083859-13083878 | None:intergenic | 30.0% |
| CTAACTAACATTTCTACTGT+GGG | + | chr3_4:13083998-13084017 | None:intergenic | 30.0% | |
| AACAAGTTCTCTAATTGACT+AGG | + | chr3_4:13084037-13084056 | None:intergenic | 30.0% | |
| ACTATAGGCTAAAAGTTATG+TGG | - | chr3_4:13084089-13084108 | Msa0491030:CDS | 30.0% | |
| ACAATACAATCGATCAAAAC+AGG | + | chr3_4:13084118-13084137 | None:intergenic | 30.0% | |
| CTTGTGTTCAGAATTGATGT+GGG | + | chr3_4:13081528-13081547 | None:intergenic | 35.0% | |
| !! | ATGTGAATTTTAGGAGGAGA+TGG | - | chr3_4:13081929-13081948 | Msa0491030:intron | 35.0% |
| ! | TTTAGAAGGCTCTAATACAC+AGG | + | chr3_4:13082136-13082155 | None:intergenic | 35.0% |
| !!! | TATATGTTTGGTTTTGGTCC+AGG | - | chr3_4:13082489-13082508 | Msa0491030:CDS | 35.0% |
| !!! | ATATGTTTGGTTTTGGTCCA+GGG | - | chr3_4:13082490-13082509 | Msa0491030:CDS | 35.0% |
| CATATTGGAGTTCTTTGTCT+GGG | + | chr3_4:13082691-13082710 | None:intergenic | 35.0% | |
| !! | TCTCTTGTGATTTGTTACAG+AGG | - | chr3_4:13082907-13082926 | Msa0491030:intron | 35.0% |
| TCTTCAAGGCTACATACAAA+TGG | + | chr3_4:13082933-13082952 | None:intergenic | 35.0% | |
| ! | ATGTAGCCTTGAAGATTGTA+AGG | - | chr3_4:13082938-13082957 | Msa0491030:intron | 35.0% |
| ! | TTTTCCCTTGATGTTGTAGA+AGG | + | chr3_4:13082998-13083017 | None:intergenic | 35.0% |
| !! | CCACTTTTGCAATTCTCAAT+AGG | + | chr3_4:13083032-13083051 | None:intergenic | 35.0% |
| CCTATTGAGAATTGCAAAAG+TGG | - | chr3_4:13083029-13083048 | Msa0491030:intron | 35.0% | |
| CAGTTTGTATGTCCTGAAAT+TGG | - | chr3_4:13083140-13083159 | Msa0491030:intron | 35.0% | |
| ATCTTCATGCTTCTGTAGTT+GGG | + | chr3_4:13083192-13083211 | None:intergenic | 35.0% | |
| AATCTTCATGCTTCTGTAGT+TGG | + | chr3_4:13083193-13083212 | None:intergenic | 35.0% | |
| AAAACCTTTATGCTGCAGTT+AGG | - | chr3_4:13083306-13083325 | Msa0491030:intron | 35.0% | |
| TAGGCTTGATACAATTGAAG+TGG | - | chr3_4:13083325-13083344 | Msa0491030:intron | 35.0% | |
| GTGAAAAATTTCATGCAACC+AGG | + | chr3_4:13083362-13083381 | None:intergenic | 35.0% | |
| TATGCAATGCCAATGTATGA+TGG | + | chr3_4:13083577-13083596 | None:intergenic | 35.0% | |
| AAGAAGCTGATGAAGAATTC+AGG | - | chr3_4:13083936-13083955 | Msa0491030:intron | 35.0% | |
| CCTAACTAACATTTCTACTG+TGG | + | chr3_4:13083999-13084018 | None:intergenic | 35.0% | |
| CCACAGTAGAAATGTTAGTT+AGG | - | chr3_4:13083996-13084015 | Msa0491030:intron | 35.0% | |
| AGTTCTCTAATTGACTAGGT+GGG | + | chr3_4:13084033-13084052 | None:intergenic | 35.0% | |
| AAGTTCTCTAATTGACTAGG+TGG | + | chr3_4:13084034-13084053 | None:intergenic | 35.0% | |
| ATGAATGAGTGAGGCTACTA+GGG | + | chr3_4:13081336-13081355 | None:intergenic | 40.0% | |
| AATGAATGAGTGAGGCTACT+AGG | + | chr3_4:13081337-13081356 | None:intergenic | 40.0% | |
| TTCATTCTGCCTACAAACAC+TGG | - | chr3_4:13081351-13081370 | Msa0491030:three_prime_UTR | 40.0% | |
| ATCTACAGATACCGCAGAAT+TGG | + | chr3_4:13081484-13081503 | None:intergenic | 40.0% | |
| CCTTGTGTTCAGAATTGATG+TGG | + | chr3_4:13081529-13081548 | None:intergenic | 40.0% | |
| CCACATCAATTCTGAACACA+AGG | - | chr3_4:13081526-13081545 | Msa0491030:CDS | 40.0% | |
| TGAAACTGAACCTCAATCAG+AGG | - | chr3_4:13081965-13081984 | Msa0491030:intron | 40.0% | |
| GAAACTGAACCTCAATCAGA+GGG | - | chr3_4:13081966-13081985 | Msa0491030:intron | 40.0% | |
| GCTAATACTTGTGAGGAATG+TGG | - | chr3_4:13081999-13082018 | Msa0491030:intron | 40.0% | |
| ! | AAGCTTTATCCCACTAAGTG+GGG | + | chr3_4:13082382-13082401 | None:intergenic | 40.0% |
| ! | CAAGCTTTATCCCACTAAGT+GGG | + | chr3_4:13082383-13082402 | None:intergenic | 40.0% |
| GCATATTGGAGTTCTTTGTC+TGG | + | chr3_4:13082692-13082711 | None:intergenic | 40.0% | |
| AACCTGATACTAATCCACCA+AGG | + | chr3_4:13082733-13082752 | None:intergenic | 40.0% | |
| !! | TTGGTGGATTAGTATCAGGT+TGG | - | chr3_4:13082732-13082751 | Msa0491030:intron | 40.0% |
| !! | TGGTGGATTAGTATCAGGTT+GGG | - | chr3_4:13082733-13082752 | Msa0491030:intron | 40.0% |
| AATCCTTGATGAAGCTTCTC+AGG | + | chr3_4:13082765-13082784 | None:intergenic | 40.0% | |
| GTCACCTTCTACAACATCAA+GGG | - | chr3_4:13082991-13083010 | Msa0491030:intron | 40.0% | |
| ! | TTCTGATTTTCACCACTACG+AGG | + | chr3_4:13083119-13083138 | None:intergenic | 40.0% |
| ! | CAGAAGCATGAAGATTCTCA+TGG | - | chr3_4:13083197-13083216 | Msa0491030:intron | 40.0% |
| !! | AACATGAGCTTTAAGGCACT+CGG | + | chr3_4:13083390-13083409 | None:intergenic | 40.0% |
| ATACCTCCTCCATCATACAT+TGG | - | chr3_4:13083565-13083584 | Msa0491030:CDS | 40.0% | |
| TGTTGAAGCACATCCACAAT+TGG | + | chr3_4:13083641-13083660 | None:intergenic | 40.0% | |
| AAGTAAAGCCGTTTGTGTGT+GGG | - | chr3_4:13083702-13083721 | Msa0491030:intron | 40.0% | |
| TTAGGAAACCCACACACAAA+CGG | + | chr3_4:13083713-13083732 | None:intergenic | 40.0% | |
| TGTGTGGGTTTCCTAATTGT+GGG | - | chr3_4:13083717-13083736 | Msa0491030:intron | 40.0% | |
| CTGATGAAGAATTCAGGTCA+AGG | - | chr3_4:13083942-13083961 | Msa0491030:intron | 40.0% | |
| ACTAACATTTCTACTGTGGG+AGG | + | chr3_4:13083995-13084014 | None:intergenic | 40.0% | |
| GTTCTCTAATTGACTAGGTG+GGG | + | chr3_4:13084032-13084051 | None:intergenic | 40.0% | |
| !! | AGAGAACTTGTTATTCGTGC+AGG | - | chr3_4:13084045-13084064 | Msa0491030:CDS | 40.0% |
| GTGCAGGATTGTCAGTAAAA+TGG | - | chr3_4:13084061-13084080 | Msa0491030:CDS | 40.0% | |
| GTAGGCAGAATGAATGAGTG+AGG | + | chr3_4:13081345-13081364 | None:intergenic | 45.0% | |
| TTCTGCCTACAAACACTGGA+AGG | - | chr3_4:13081355-13081374 | Msa0491030:three_prime_UTR | 45.0% | |
| TCGATCCTTCCAGTGTTTGT+AGG | + | chr3_4:13081363-13081382 | None:intergenic | 45.0% | |
| CGCTATTACTGCCAATTCTG+CGG | - | chr3_4:13081470-13081489 | Msa0491030:exon | 45.0% | |
| TTCAAACCACCCTCTGATTG+AGG | + | chr3_4:13081978-13081997 | None:intergenic | 45.0% | |
| TATGCAAAGTCATTCCCTCG+AGG | - | chr3_4:13082058-13082077 | Msa0491030:CDS | 45.0% | |
| TTTATCCCACTAAGTGGGGT+TGG | + | chr3_4:13082378-13082397 | None:intergenic | 45.0% | |
| ! | CCAAGCTTTATCCCACTAAG+TGG | + | chr3_4:13082384-13082403 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAAGCT+TGG | - | chr3_4:13082381-13082400 | Msa0491030:intron | 45.0% | |
| AAAGAACTCCAATATGCGCG+AGG | - | chr3_4:13082695-13082714 | Msa0491030:intron | 45.0% | |
| GCTTCATCAAGGATTTGCCT+CGG | - | chr3_4:13082770-13082789 | Msa0491030:intron | 45.0% | |
| ! | TTTTGAATTGAGCGTGACCG+AGG | + | chr3_4:13082790-13082809 | None:intergenic | 45.0% |
| GTCACGCTCAATTCAAAACG+AGG | - | chr3_4:13082792-13082811 | Msa0491030:intron | 45.0% | |
| CAAAGCTGATCAGCAGTTGT+CGG | - | chr3_4:13082851-13082870 | Msa0491030:intron | 45.0% | |
| AGCTCGCCTTACAATCTTCA+AGG | + | chr3_4:13082947-13082966 | None:intergenic | 45.0% | |
| TAAGGCGAGCTACAGAAGAA+AGG | - | chr3_4:13082956-13082975 | Msa0491030:intron | 45.0% | |
| CGTCACCTTCTACAACATCA+AGG | - | chr3_4:13082990-13083009 | Msa0491030:intron | 45.0% | |
| ! | ATTTTCACCACTACGAGGAG+GGG | + | chr3_4:13083114-13083133 | None:intergenic | 45.0% |
| ! | GATTTTCACCACTACGAGGA+GGG | + | chr3_4:13083115-13083134 | None:intergenic | 45.0% |
| ! | TGATTTTCACCACTACGAGG+AGG | + | chr3_4:13083116-13083135 | None:intergenic | 45.0% |
| GTATGTCCTGAAATTGGCTG+TGG | - | chr3_4:13083146-13083165 | Msa0491030:intron | 45.0% | |
| TCCTGAAATTGGCTGTGGAA+AGG | - | chr3_4:13083151-13083170 | Msa0491030:intron | 45.0% | |
| ACCTTTCCACAGCCAATTTC+AGG | + | chr3_4:13083155-13083174 | None:intergenic | 45.0% | |
| CAAGCCTAACTGCAGCATAA+AGG | + | chr3_4:13083313-13083332 | None:intergenic | 45.0% | |
| TGTCGCAGGTCACATATTGA+TGG | + | chr3_4:13083421-13083440 | None:intergenic | 45.0% | |
| !! | AATTGCTGGCTTCATGTGTG+CGG | + | chr3_4:13083487-13083506 | None:intergenic | 45.0% |
| AATTGCTTCGGGTGAATTGC+TGG | + | chr3_4:13083501-13083520 | None:intergenic | 45.0% | |
| ! | ATGCCAATGTATGATGGAGG+AGG | + | chr3_4:13083571-13083590 | None:intergenic | 45.0% |
| GCAATGCCAATGTATGATGG+AGG | + | chr3_4:13083574-13083593 | None:intergenic | 45.0% | |
| CAAGTAAAGCCGTTTGTGTG+TGG | - | chr3_4:13083701-13083720 | Msa0491030:intron | 45.0% | |
| GTGTGTGGGTTTCCTAATTG+TGG | - | chr3_4:13083716-13083735 | Msa0491030:intron | 45.0% | |
| GGTTTCCTAATTGTGGGATG+AGG | - | chr3_4:13083723-13083742 | Msa0491030:intron | 45.0% | |
| GCAAACCTCATCCCACAATT+AGG | + | chr3_4:13083731-13083750 | None:intergenic | 45.0% | |
| CAAGGACGGACAACTTACAA+GGG | + | chr3_4:13083804-13083823 | None:intergenic | 45.0% | |
| ACAAGGACGGACAACTTACA+AGG | + | chr3_4:13083805-13083824 | None:intergenic | 45.0% | |
| AAGAATTCAGGTCAAGGCCA+AGG | - | chr3_4:13083948-13083967 | Msa0491030:intron | 45.0% | |
| AGAATTCAGGTCAAGGCCAA+GGG | - | chr3_4:13083949-13083968 | Msa0491030:intron | 45.0% | |
| !!! | TTTTTTTATATATATAAATG+AGG | - | chr3_4:13084215-13084234 | Msa0491030:five_prime_UTR | 5.0% |
| ACTGAACCTCAATCAGAGGG+TGG | - | chr3_4:13081969-13081988 | Msa0491030:intron | 50.0% | |
| ATGTAGCCAACCCCACTTAG+TGG | - | chr3_4:13082369-13082388 | Msa0491030:intron | 50.0% | |
| TGTAGCCAACCCCACTTAGT+GGG | - | chr3_4:13082370-13082389 | Msa0491030:intron | 50.0% | |
| !! | GGCCTTGGTGGATTAGTATC+AGG | - | chr3_4:13082728-13082747 | Msa0491030:intron | 50.0% |
| CCTTGATGAAGCTTCTCAGG+AGG | + | chr3_4:13082762-13082781 | None:intergenic | 50.0% | |
| CCTCCTGAGAAGCTTCATCA+AGG | - | chr3_4:13082759-13082778 | Msa0491030:intron | 50.0% | |
| ! | GCAGGTCACATATTGATGGC+AGG | + | chr3_4:13083417-13083436 | None:intergenic | 50.0% |
| TATGTGACCTGCGACACTTG+TGG | - | chr3_4:13083425-13083444 | Msa0491030:intron | 50.0% | |
| ATGTGACCTGCGACACTTGT+GGG | - | chr3_4:13083426-13083445 | Msa0491030:intron | 50.0% | |
| GAATTCAGGTCAAGGCCAAG+GGG | - | chr3_4:13083950-13083969 | Msa0491030:intron | 50.0% | |
| GCGTAATGCCTCGCGCATAT+TGG | + | chr3_4:13082706-13082725 | None:intergenic | 55.0% | |
| ! | TATGCGCGAGGCATTACGCT+TGG | - | chr3_4:13082707-13082726 | Msa0491030:intron | 55.0% |
| AGTTCTACCCCTCCTCGTAG+TGG | - | chr3_4:13083104-13083123 | Msa0491030:intron | 55.0% | |
| GAAGTGGTGTGCTTAGAGCC+TGG | - | chr3_4:13083341-13083360 | Msa0491030:intron | 55.0% | |
| ! | CTTAGTCCCACAAGTGTCGC+AGG | + | chr3_4:13083435-13083454 | None:intergenic | 55.0% |
| TTTCTCTTCACCCCTCCCCT+TGG | + | chr3_4:13083968-13083987 | None:intergenic | 55.0% | |
| ! | CGAGGCATTACGCTTGGCCT+TGG | - | chr3_4:13082713-13082732 | Msa0491030:intron | 60.0% |
| !! | GGCATTACGCTTGGCCTTGG+TGG | - | chr3_4:13082716-13082735 | Msa0491030:intron | 60.0% |
| TTCAGGTCAAGGCCAAGGGG+AGG | - | chr3_4:13083953-13083972 | Msa0491030:intron | 60.0% | |
| TCAGGTCAAGGCCAAGGGGA+GGG | - | chr3_4:13083954-13083973 | Msa0491030:intron | 60.0% | |
| CAGGTCAAGGCCAAGGGGAG+GGG | - | chr3_4:13083955-13083974 | Msa0491030:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 13081311 | 13084254 | 13081311 | ID=Msa0491030;Name=Msa0491030 |
| chr3_4 | mRNA | 13081311 | 13084254 | 13081311 | ID=Msa0491030-mRNA-1;Parent=Msa0491030;Name=Msa0491030-mRNA-1;_AED=0.14;_eAED=0.14;_QI=108|0.8|0.83|1|0.6|0.66|6|176|332 |
| chr3_4 | exon | 13081311 | 13081639 | 13081311 | ID=Msa0491030-mRNA-1:exon:4003;Parent=Msa0491030-mRNA-1 |
| chr3_4 | exon | 13081760 | 13081903 | 13081760 | ID=Msa0491030-mRNA-1:exon:4002;Parent=Msa0491030-mRNA-1 |
| chr3_4 | exon | 13082006 | 13082241 | 13082006 | ID=Msa0491030-mRNA-1:exon:4001;Parent=Msa0491030-mRNA-1 |
| chr3_4 | exon | 13082440 | 13082638 | 13082440 | ID=Msa0491030-mRNA-1:exon:4000;Parent=Msa0491030-mRNA-1 |
| chr3_4 | exon | 13083486 | 13083623 | 13083486 | ID=Msa0491030-mRNA-1:exon:3999;Parent=Msa0491030-mRNA-1 |
| chr3_4 | exon | 13084018 | 13084254 | 13084018 | ID=Msa0491030-mRNA-1:exon:3998;Parent=Msa0491030-mRNA-1 |
| chr3_4 | five_prime_UTR | 13084147 | 13084254 | 13084147 | ID=Msa0491030-mRNA-1:five_prime_utr;Parent=Msa0491030-mRNA-1 |
| chr3_4 | CDS | 13084018 | 13084146 | 13084018 | ID=Msa0491030-mRNA-1:cds;Parent=Msa0491030-mRNA-1 |
| chr3_4 | CDS | 13083486 | 13083623 | 13083486 | ID=Msa0491030-mRNA-1:cds;Parent=Msa0491030-mRNA-1 |
| chr3_4 | CDS | 13082440 | 13082638 | 13082440 | ID=Msa0491030-mRNA-1:cds;Parent=Msa0491030-mRNA-1 |
| chr3_4 | CDS | 13082006 | 13082241 | 13082006 | ID=Msa0491030-mRNA-1:cds;Parent=Msa0491030-mRNA-1 |
| chr3_4 | CDS | 13081760 | 13081903 | 13081760 | ID=Msa0491030-mRNA-1:cds;Parent=Msa0491030-mRNA-1 |
| chr3_4 | CDS | 13081487 | 13081639 | 13081487 | ID=Msa0491030-mRNA-1:cds;Parent=Msa0491030-mRNA-1 |
| chr3_4 | three_prime_UTR | 13081311 | 13081486 | 13081311 | ID=Msa0491030-mRNA-1:three_prime_utr;Parent=Msa0491030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
