AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0604510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604510 MtrunA17_Chr4g0033501 83.571 280 23 3 1 268 1 269 1.51e-166 464
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604510 AT3G59390.1 56.929 267 89 4 14 268 16 268 2.55e-94 281
Msa0604510 AT3G59390.2 56.929 267 89 4 14 268 16 268 2.55e-94 281

Find 79 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGAACTTGTATTAAAAT+TGG 0.155050 4_2:+50117482 None:intergenic
TTAAGCACCACAAGTTTATT+TGG 0.192725 4_2:+50119686 None:intergenic
TTCAAAAGAATCTTAACTTA+TGG 0.213944 4_2:-50117446 Msa0604510:three_prime_UTR
GAATAGGCTAAATGGTAAAA+AGG 0.237047 4_2:-50117567 Msa0604510:three_prime_UTR
AGGCTGCATTTGGAAAATTT+AGG 0.267476 4_2:-50117619 Msa0604510:three_prime_UTR
TCCGTGTATAAACATGATTC+TGG 0.284960 4_2:+50118154 None:intergenic
GGCTGCATTTGGAAAATTTA+GGG 0.285748 4_2:-50117618 Msa0604510:three_prime_UTR
CAATTATTACCATATACTTT+GGG 0.311473 4_2:+50119226 None:intergenic
TCTCTACCGTCCAATTCTTC+TGG 0.316613 4_2:-50121174 Msa0604510:CDS
TCTCATTTATTACACTAGTT+TGG 0.317513 4_2:-50117412 Msa0604510:three_prime_UTR
TTATGACGCCCCAAAGTATA+TGG 0.324273 4_2:-50119235 Msa0604510:intron
ACAATTATTACCATATACTT+TGG 0.332093 4_2:+50119225 None:intergenic
TCTCGTTGTTGTCCTCAAAC+TGG 0.336976 4_2:-50123300 Msa0604510:CDS
AACGGCATCCATGTTGTTGC+TGG 0.341847 4_2:-50119862 Msa0604510:CDS
GGGATAGAGAATAGGCTAAA+TGG 0.342839 4_2:-50117575 Msa0604510:three_prime_UTR
GAAACATTACTTGCAGTAGA+AGG 0.354812 4_2:+50122975 None:intergenic
ACGCTACTTCAGGCTGCATT+TGG 0.355935 4_2:-50117629 Msa0604510:three_prime_UTR
AAAGAACTTGTATTAAAATT+GGG 0.364592 4_2:+50117483 None:intergenic
TTCTGCAATAACACCGTTCA+AGG 0.367982 4_2:-50124173 Msa0604510:CDS
TGCAGACTTACCAGAAGAAT+TGG 0.370851 4_2:+50121164 None:intergenic
GATGTTGCAAGATTTATTAA+AGG 0.373910 4_2:+50117343 None:intergenic
GGTTAAGACATTACCATTGC+AGG 0.380352 4_2:+50123098 None:intergenic
GAGAATTTCTTCCCAGTTTG+AGG 0.383527 4_2:+50123288 None:intergenic
TAAGCACCACAAGTTTATTT+GGG 0.392921 4_2:+50119687 None:intergenic
ATCGCTATCAGAAAAGATAT+TGG 0.401749 4_2:-50124212 Msa0604510:CDS
ATGTTGCAAGATTTATTAAA+GGG 0.435398 4_2:+50117344 None:intergenic
ACTGGAAAGAACGCTACTTC+AGG 0.453712 4_2:-50117639 Msa0604510:three_prime_UTR
CGCTACCGCAATAGCATTGG+AGG 0.472186 4_2:+50118331 None:intergenic
GGAGAAAATGAAAAGGCAAC+AGG 0.486872 4_2:+50118352 None:intergenic
GAGCTGCAAGGGAGGTTGCT+TGG 0.495382 4_2:-50119292 Msa0604510:CDS
AGACACAAGGGATAGAGAAT+AGG 0.496762 4_2:-50117583 Msa0604510:three_prime_UTR
CTCGTTGTTGTCCTCAAACT+GGG 0.497265 4_2:-50123299 Msa0604510:CDS
CAATCTATACTTTCTTGTGA+TGG 0.499244 4_2:-50118127 Msa0604510:CDS
CGTTCTTTCCAGTTCGTGAA+AGG 0.504484 4_2:+50117649 None:intergenic
GATGAAGATGAGTAATGTTA+CGG 0.504863 4_2:+50124265 None:intergenic
GTGAAGAATGAAAGGTGAAA+GGG 0.516392 4_2:-50117390 Msa0604510:three_prime_UTR
AGTGTATTTGACTACTGTGC+TGG 0.523981 4_2:-50122454 Msa0604510:CDS
GCAATAACACCGTTCAAGGC+AGG 0.524622 4_2:-50124169 Msa0604510:CDS
TAGCGCTACCGCAATAGCAT+TGG 0.524715 4_2:+50118328 None:intergenic
GGAGGTTGCTTGGCAAGTGT+TGG 0.527938 4_2:-50119282 Msa0604510:CDS
GCGTCATAAACAACTTCAGC+AGG 0.537785 4_2:+50119249 None:intergenic
CTTAATTTAACAGACAAAGA+AGG 0.542918 4_2:-50123027 Msa0604510:intron
TACCGTTGTTGTCGGAAAGA+AGG 0.543481 4_2:+50124144 None:intergenic
GGATACCATACCGTTGTTGT+CGG 0.544227 4_2:+50124136 None:intergenic
CTAGTTTGGTGAAGAATGAA+AGG 0.546211 4_2:-50117398 Msa0604510:three_prime_UTR
ACAACATAAAAGCTAATGGA+TGG 0.549269 4_2:+50117694 None:intergenic
GGTGAAGAATGAAAGGTGAA+AGG 0.551029 4_2:-50117391 Msa0604510:three_prime_UTR
ATGGTATATTAAATTTCTCA+AGG 0.552194 4_2:+50117713 None:intergenic
GAAACGAGGGGAAAACTGCT+TGG 0.553818 4_2:+50117321 None:intergenic
TGAACGGTGTTATTGCAGAA+AGG 0.556447 4_2:+50124176 None:intergenic
TTGCTGTCTCAATCCTGCAA+TGG 0.563221 4_2:-50123111 Msa0604510:intron
CATTGGAGGAGAAAATGAAA+AGG 0.565420 4_2:+50118345 None:intergenic
TTTCTCCTCCAATGCTATTG+CGG 0.570597 4_2:-50118336 Msa0604510:intron
AATTATTACCATATACTTTG+GGG 0.574079 4_2:+50119227 None:intergenic
TCTTTCCGACAACAACGGTA+TGG 0.584868 4_2:-50124141 Msa0604510:intron
ATGGTTCGCATCAGCACACA+AGG 0.588855 4_2:-50118108 Msa0604510:CDS
AAGAAGGAACCTGCCTTGAA+CGG 0.591557 4_2:+50124160 None:intergenic
AATTCAGTTTGCAAGTCAAG+AGG 0.592476 4_2:-50119722 Msa0604510:CDS
GTGAAAGGGAGAATTATACT+TGG 0.608889 4_2:-50117376 Msa0604510:three_prime_UTR
CTCACAGAAGCAAGGCTGAA+CGG 0.611655 4_2:-50119880 Msa0604510:CDS
ACGGCATCCATGTTGTTGCT+GGG 0.616633 4_2:-50119861 Msa0604510:CDS
AAATACATGAGCTGCAAGGG+AGG 0.623821 4_2:-50119300 Msa0604510:CDS
TTTACCTCCCAGCAACAACA+TGG 0.629793 4_2:+50119854 None:intergenic
ACTACTGTGCTGGAAGATGT+CGG 0.631079 4_2:-50122444 Msa0604510:CDS
TGCATTTGGAAAATTTAGGG+AGG 0.633938 4_2:-50117615 Msa0604510:three_prime_UTR
GAAGATGAGTAATGTTACGG+TGG 0.634054 4_2:+50124268 None:intergenic
ATAGCACTCTCACAGAAGCA+AGG 0.642158 4_2:-50119888 Msa0604510:CDS
TCCAGAATCATGTTTATACA+CGG 0.645067 4_2:-50118155 Msa0604510:CDS
TTCCTTCTTTCCGACAACAA+CGG 0.650638 4_2:-50124146 Msa0604510:CDS
TGGACGGGCTGGTATCGAAG+TGG 0.653349 4_2:-50117786 Msa0604510:CDS
GACTTACCAGAAGAATTGGA+CGG 0.659170 4_2:+50121168 None:intergenic
AGGATGAGATAGAGACACAA+GGG 0.662816 4_2:-50117595 Msa0604510:three_prime_UTR
TCGGCATAGTTCTGAGAGTG+TGG 0.674151 4_2:-50122425 Msa0604510:intron
ACGGTAGAGAAAAGCAATGG+TGG 0.678929 4_2:+50121187 None:intergenic
ATGTGTCCCAAATAAACTTG+TGG 0.680538 4_2:-50119693 Msa0604510:CDS
GCATCCATGTTGTTGCTGGG+AGG 0.683613 4_2:-50119858 Msa0604510:intron
GAGGATGAGATAGAGACACA+AGG 0.695353 4_2:-50117596 Msa0604510:three_prime_UTR
TGGACGGTAGAGAAAAGCAA+TGG 0.695543 4_2:+50121184 None:intergenic
AACACAATTACAAGGCACTG+AGG 0.728466 4_2:+50121131 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGAACAAAATATTATT+TGG - chr4_2:50120063-50120082 Msa0604510:intron 10.0%
!! ATATCATCTTAAATTTATAT+AGG + chr4_2:50122496-50122515 None:intergenic 10.0%
!! AAAATTTAGTAATGTTAAAA+GGG + chr4_2:50123583-50123602 None:intergenic 10.0%
!!! TTTGAAATTTAAAACAAAAA+TGG + chr4_2:50123784-50123803 None:intergenic 10.0%
!! GAAAATAAAGAAAAGAAAAA+AGG + chr4_2:50117506-50117525 None:intergenic 15.0%
!!! TTACATTCTTATTATTTTGT+AGG - chr4_2:50118261-50118280 Msa0604510:intron 15.0%
!! AAAGTGAAAATAACAAATAA+TGG - chr4_2:50118410-50118429 Msa0604510:intron 15.0%
!! TATAGAATAATGTATTAATG+AGG + chr4_2:50120033-50120052 None:intergenic 15.0%
!!! TATAATTTTATTTACTTGGA+TGG - chr4_2:50122064-50122083 Msa0604510:intron 15.0%
!! ATTTAAATTGATATTTGCTT+TGG - chr4_2:50123427-50123446 Msa0604510:intron 15.0%
!! TTTAAATTGATATTTGCTTT+GGG - chr4_2:50123428-50123447 Msa0604510:intron 15.0%
!! CAAAATTTAGTAATGTTAAA+AGG + chr4_2:50123584-50123603 None:intergenic 15.0%
!! AAAGAACTTGTATTAAAATT+GGG + chr4_2:50124138-50124157 None:intergenic 15.0%
!! AAAAGAACTTGTATTAAAAT+TGG + chr4_2:50124139-50124158 None:intergenic 15.0%
!! ATTATGTTCAATTATGTTAC+CGG + chr4_2:50117593-50117612 None:intergenic 20.0%
!! AACAAAACAAAAAAGAAGTT+AGG + chr4_2:50118374-50118393 None:intergenic 20.0%
!! ACAAACATCATATAACTAAT+TGG - chr4_2:50119127-50119146 Msa0604510:intron 20.0%
!! CAATTTCAAAAACAATAAGA+TGG + chr4_2:50119241-50119260 None:intergenic 20.0%
!! AATCAGCATAACAATTTATT+TGG - chr4_2:50119460-50119479 Msa0604510:intron 20.0%
!! TGATTGTGAATTTAAACAAT+AGG + chr4_2:50119765-50119784 None:intergenic 20.0%
!!! TTTACAATTCAAGTTTACAA+CGG + chr4_2:50119825-50119844 None:intergenic 20.0%
!! CATTTACCAACTAATATATT+TGG + chr4_2:50119907-50119926 None:intergenic 20.0%
!!! ATCTTGTTATTTAATATTCC+AGG - chr4_2:50120380-50120399 Msa0604510:intron 20.0%
!!! GGTAAATATATTTATGCTTT+TGG - chr4_2:50121648-50121667 Msa0604510:intron 20.0%
!! TGTTGCTAATATATTTCAAT+GGG - chr4_2:50122000-50122019 Msa0604510:intron 20.0%
!!! GACGTATAATTTTATTTACT+TGG - chr4_2:50122060-50122079 Msa0604510:intron 20.0%
!!! AAGCATATTTAAAGTATTTC+TGG - chr4_2:50122101-50122120 Msa0604510:intron 20.0%
!! AATTATTACCATATACTTTG+GGG + chr4_2:50122394-50122413 None:intergenic 20.0%
!! CAATTATTACCATATACTTT+GGG + chr4_2:50122395-50122414 None:intergenic 20.0%
!! ACAATTATTACCATATACTT+TGG + chr4_2:50122396-50122415 None:intergenic 20.0%
!! ATGGTATATTAAATTTCTCA+AGG + chr4_2:50123908-50123927 None:intergenic 20.0%
!!! TTTTACAACATAAAAGCTAA+TGG + chr4_2:50123931-50123950 None:intergenic 20.0%
!!! AGATTCTTTTGAAAAACAAA+AGG + chr4_2:50124165-50124184 None:intergenic 20.0%
!! TTCAAAAGAATCTTAACTTA+TGG - chr4_2:50124172-50124191 Msa0604510:CDS 20.0%
!! ATGTTGCAAGATTTATTAAA+GGG + chr4_2:50124277-50124296 None:intergenic 20.0%
! TTGAAATGTAAAACTGTTTC+TGG - chr4_2:50117655-50117674 Msa0604510:three_prime_UTR 25.0%
! ATTTGAATACACTAACGTAA+AGG + chr4_2:50117868-50117887 None:intergenic 25.0%
!!! AAAATTGATTTTGACGTGTT+TGG - chr4_2:50117982-50118001 Msa0604510:intron 25.0%
!! TAAGAATGTAAAAGTGTGTT+CGG + chr4_2:50118252-50118271 None:intergenic 25.0%
!! TTGTGTTTAATAATTTGCAG+TGG - chr4_2:50118436-50118455 Msa0604510:intron 25.0%
! CTTAATTTAACAGACAAAGA+AGG - chr4_2:50118591-50118610 Msa0604510:intron 25.0%
! CTATTGTCAAAGAGAAAATA+TGG - chr4_2:50118836-50118855 Msa0604510:intron 25.0%
! ACATATACAAGAGATTCTTT+CGG + chr4_2:50119068-50119087 None:intergenic 25.0%
! TCTAAATCTAGACATTTGAA+GGG - chr4_2:50119400-50119419 Msa0604510:intron 25.0%
! CAGTAACCAAATATATTAGT+TGG - chr4_2:50119898-50119917 Msa0604510:intron 25.0%
!!! TTTTATTTCCTATGTTTGAC+TGG + chr4_2:50119950-50119969 None:intergenic 25.0%
! TAGAAACTAACACAATTACA+AGG + chr4_2:50120498-50120517 None:intergenic 25.0%
!!! AACTGATGAGATTTTAGAAT+CGG + chr4_2:50120545-50120564 None:intergenic 25.0%
!!! TTGTGGAATGCTATTTTTAA+GGG - chr4_2:50120762-50120781 Msa0604510:intron 25.0%
! TCGATAGAATAGTTTACATT+TGG - chr4_2:50121132-50121151 Msa0604510:intron 25.0%
!!! TTGTGGAATGCTATTTTTAA+GGG + chr4_2:50120762-50120781 None:intergenic 25.0%
!!! ATTGTGGAATGCTATTTTTA+AGG + chr4_2:50121537-50121556 None:intergenic 25.0%
! TTCCACAATAAACTCAATAT+TGG - chr4_2:50121548-50121567 Msa0604510:intron 25.0%
! TTAACCTCAACTAAAAAGAA+GGG + chr4_2:50121803-50121822 None:intergenic 25.0%
! ATTAACCTCAACTAAAAAGA+AGG + chr4_2:50121804-50121823 None:intergenic 25.0%
! CTGTTGCTAATATATTTCAA+TGG - chr4_2:50121999-50122018 Msa0604510:intron 25.0%
! AGCACTAAGCATTAATAAAA+TGG + chr4_2:50122152-50122171 None:intergenic 25.0%
!! TTTTATTAATGCTTAGTGCT+TGG - chr4_2:50122152-50122171 Msa0604510:intron 25.0%
! TAAGAAGAAAACAAACATGT+TGG - chr4_2:50122425-50122444 Msa0604510:intron 25.0%
! TTCCAGATATTGATAAATAG+AGG - chr4_2:50122449-50122468 Msa0604510:CDS 25.0%
! AACCTCTATTTATCAATATC+TGG + chr4_2:50122454-50122473 None:intergenic 25.0%
!! TAGTCTTAGAATTTGTAGTT+GGG - chr4_2:50122560-50122579 Msa0604510:intron 25.0%
! GCATGAATTCAAATCAATAT+AGG + chr4_2:50123352-50123371 None:intergenic 25.0%
! TTGTAAGGAAACACATTAAT+TGG + chr4_2:50123753-50123772 None:intergenic 25.0%
! AATAGGCTAAATGGTAAAAA+GGG - chr4_2:50124052-50124071 Msa0604510:intron 25.0%
! TCTCATTTATTACACTAGTT+TGG - chr4_2:50124206-50124225 Msa0604510:CDS 25.0%
! GATGTTGCAAGATTTATTAA+AGG + chr4_2:50124278-50124297 None:intergenic 25.0%
GATGAAGATGAGTAATGTTA+CGG + chr4_2:50117356-50117375 None:intergenic 30.0%
!! AATATCTTTTCTGATAGCGA+TGG + chr4_2:50117407-50117426 None:intergenic 30.0%
ATCGCTATCAGAAAAGATAT+TGG - chr4_2:50117406-50117425 Msa0604510:three_prime_UTR 30.0%
!! AATATTTCCTGTGTCACTTT+AGG - chr4_2:50117533-50117552 Msa0604510:three_prime_UTR 30.0%
!! AAATGTAAAACTGTTTCTGG+AGG - chr4_2:50117658-50117677 Msa0604510:three_prime_UTR 30.0%
!!! AGGTGTTGAATTGATTTTAG+AGG - chr4_2:50117678-50117697 Msa0604510:three_prime_UTR 30.0%
TTATGTATGCAATGCACTTT+CGG - chr4_2:50118284-50118303 Msa0604510:intron 30.0%
TTTGTCTGTTAAATTAAGCC+CGG + chr4_2:50118589-50118608 None:intergenic 30.0%
TATTGTTGCATGTAAACGTA+AGG - chr4_2:50118743-50118762 Msa0604510:intron 30.0%
TGACAATAGAAATAGCTTAC+AGG + chr4_2:50118825-50118844 None:intergenic 30.0%
TACTTTCATATACGCTATCT+TGG - chr4_2:50118873-50118892 Msa0604510:intron 30.0%
TGAAGATGAAAAGGAAAAAG+GGG + chr4_2:50119022-50119041 None:intergenic 30.0%
CTGAAGATGAAAAGGAAAAA+GGG + chr4_2:50119023-50119042 None:intergenic 30.0%
ACATCATATAACTAATTGGC+AGG - chr4_2:50119131-50119150 Msa0604510:intron 30.0%
CATCATATAACTAATTGGCA+GGG - chr4_2:50119132-50119151 Msa0604510:intron 30.0%
TTCAAAAACAATAAGATGGC+AGG + chr4_2:50119237-50119256 None:intergenic 30.0%
! TGGAAAGTGTATGTTATTCA+AGG + chr4_2:50119293-50119312 None:intergenic 30.0%
ATACACTTTCCATATTAGCA+AGG - chr4_2:50119301-50119320 Msa0604510:CDS 30.0%
AATAAGCAACCTTGCTAATA+TGG + chr4_2:50119313-50119332 None:intergenic 30.0%
! CATGCACAAAACTATTTTCA+TGG - chr4_2:50119334-50119353 Msa0604510:intron 30.0%
GTCTAAATCTAGACATTTGA+AGG - chr4_2:50119399-50119418 Msa0604510:intron 30.0%
CTAAATCTAGACATTTGAAG+GGG - chr4_2:50119401-50119420 Msa0604510:intron 30.0%
TGAAAATTCCAGTCAAACAT+AGG - chr4_2:50119939-50119958 Msa0604510:intron 30.0%
TGTATTAATGAGGTCAAGTA+TGG + chr4_2:50120023-50120042 None:intergenic 30.0%
AAACCGAATATCGTAGAAAA+TGG - chr4_2:50120125-50120144 Msa0604510:intron 30.0%
ACAGTAGCATATTATTCCTA+AGG + chr4_2:50120575-50120594 None:intergenic 30.0%
ATATCGAGTAGTTAAGTAGA+TGG - chr4_2:50120622-50120641 Msa0604510:intron 30.0%
!! ATGTCATTTGAATGGATTGT+AGG + chr4_2:50120653-50120672 None:intergenic 30.0%
! GAAGTACAATGTCATTTGAA+TGG + chr4_2:50120661-50120680 None:intergenic 30.0%
ACATTGTACTTCGTATTCAT+TGG - chr4_2:50120669-50120688 Msa0604510:intron 30.0%
CATTGTACTTCGTATTCATT+GGG - chr4_2:50120670-50120689 Msa0604510:intron 30.0%
ACTCAACTTTGACTGAATAT+TGG + chr4_2:50120740-50120759 None:intergenic 30.0%
!!! GTTGTGGAATGCTATTTTTA+AGG - chr4_2:50120761-50120780 Msa0604510:intron 30.0%
!! GAATGTGTAACACTTTTTGA+GGG + chr4_2:50120848-50120867 None:intergenic 30.0%
!! AGAATGTGTAACACTTTTTG+AGG + chr4_2:50120849-50120868 None:intergenic 30.0%
TAAACAGATTATGGGATAAG+TGG - chr4_2:50121478-50121497 Msa0604510:intron 30.0%
AAACAGATTATGGGATAAGT+GGG - chr4_2:50121479-50121498 Msa0604510:intron 30.0%
AGCCAATATTGAGTTTATTG+TGG + chr4_2:50121553-50121572 None:intergenic 30.0%
! TTTTCATGTATTGAATCCAG+TGG - chr4_2:50121704-50121723 Msa0604510:intron 30.0%
!!! ATATCCCTTCTTTTTAGTTG+AGG - chr4_2:50121796-50121815 Msa0604510:intron 30.0%
TAAGCACCACAAGTTTATTT+GGG + chr4_2:50121934-50121953 None:intergenic 30.0%
TTAAGCACCACAAGTTTATT+TGG + chr4_2:50121935-50121954 None:intergenic 30.0%
ATCAATTGATCTTCGTTATG+TGG - chr4_2:50122284-50122303 Msa0604510:intron 30.0%
TCAATTGATCTTCGTTATGT+GGG - chr4_2:50122285-50122304 Msa0604510:intron 30.0%
!! ATTCTAAGACTAGTTATGCA+GGG + chr4_2:50122552-50122571 None:intergenic 30.0%
!! AATTCTAAGACTAGTTATGC+AGG + chr4_2:50122553-50122572 None:intergenic 30.0%
!! CTAGTCTTAGAATTTGTAGT+TGG - chr4_2:50122559-50122578 Msa0604510:intron 30.0%
TGAACAAGTGTTTATAAGTG+GGG + chr4_2:50122629-50122648 None:intergenic 30.0%
CTGAACAAGTGTTTATAAGT+GGG + chr4_2:50122630-50122649 None:intergenic 30.0%
TGCTACCATATTAGAAATCA+TGG - chr4_2:50122790-50122809 Msa0604510:intron 30.0%
CACAACCATGATTTCTAATA+TGG + chr4_2:50122798-50122817 None:intergenic 30.0%
AGAACAAGTGTTTATAAGTG+GGG + chr4_2:50122864-50122883 None:intergenic 30.0%
CAGAACAAGTGTTTATAAGT+GGG + chr4_2:50122865-50122884 None:intergenic 30.0%
! ACATGGAGTTTGGTAATTAA+AGG + chr4_2:50123187-50123206 None:intergenic 30.0%
TTAATTACCAAACTCCATGT+TGG - chr4_2:50123187-50123206 Msa0604510:intron 30.0%
TCATTACACAATCTATACCA+AGG - chr4_2:50123388-50123407 Msa0604510:intron 30.0%
TCCAGAATCATGTTTATACA+CGG - chr4_2:50123463-50123482 Msa0604510:intron 30.0%
CAATCTATACTTTCTTGTGA+TGG - chr4_2:50123491-50123510 Msa0604510:intron 30.0%
!! GTTTGTTTTCTCTTGTAATG+CGG - chr4_2:50123692-50123711 Msa0604510:intron 30.0%
TTGTTTGACTAACTTTCTTC+AGG - chr4_2:50123717-50123736 Msa0604510:intron 30.0%
AAAATGGAGTGAAGTTTGTA+AGG + chr4_2:50123768-50123787 None:intergenic 30.0%
!!! CAACTATTGTTTTGATGGTA+TGG - chr4_2:50123855-50123874 Msa0604510:intron 30.0%
!!! TATTGTTTTGATGGTATGGA+AGG - chr4_2:50123859-50123878 Msa0604510:intron 30.0%
ACAACATAAAAGCTAATGGA+TGG + chr4_2:50123927-50123946 None:intergenic 30.0%
GAATAGGCTAAATGGTAAAA+AGG - chr4_2:50124051-50124070 Msa0604510:intron 30.0%
TGAACATAATCACATGTGTC+AGG - chr4_2:50117603-50117622 Msa0604510:three_prime_UTR 35.0%
GAACATAATCACATGTGTCA+GGG - chr4_2:50117604-50117623 Msa0604510:three_prime_UTR 35.0%
TGAATACACTAACGTAAAGG+TGG + chr4_2:50117865-50117884 None:intergenic 35.0%
! TAAAAGTGTGTTCGGTTCTA+TGG + chr4_2:50118244-50118263 None:intergenic 35.0%
AAGGTGAAAAATCAAAAGGC+AGG + chr4_2:50118544-50118563 None:intergenic 35.0%
GAAACATTACTTGCAGTAGA+AGG + chr4_2:50118646-50118665 None:intergenic 35.0%
TGTTTATCTGTGTCTGTATC+TGG + chr4_2:50118979-50118998 None:intergenic 35.0%
ATGAAAAGGAAAAAGGGGTA+GGG + chr4_2:50119017-50119036 None:intergenic 35.0%
GCTGAAGATGAAAAGGAAAA+AGG + chr4_2:50119024-50119043 None:intergenic 35.0%
GTTAGAAGCTGAAGATGAAA+AGG + chr4_2:50119031-50119050 None:intergenic 35.0%
TCTTTCGGTTACATAAGAAC+AGG + chr4_2:50119053-50119072 None:intergenic 35.0%
CTCTAACAAGTCAAGAAGAT+AGG + chr4_2:50119363-50119382 None:intergenic 35.0%
!! CTATCTTCTTGACTTGTTAG+AGG - chr4_2:50119361-50119380 Msa0604510:intron 35.0%
CATTCAAGACACGCTAAAAA+TGG - chr4_2:50119523-50119542 Msa0604510:intron 35.0%
GGACAACATAACAACTTGAA+CGG - chr4_2:50119662-50119681 Msa0604510:intron 35.0%
GACAACATAACAACTTGAAC+GGG - chr4_2:50119663-50119682 Msa0604510:intron 35.0%
GCTGTCAAATCTGAGAATTT+AGG - chr4_2:50119787-50119806 Msa0604510:intron 35.0%
GTCAAGTATGGCATTGTAAT+TGG + chr4_2:50120011-50120030 None:intergenic 35.0%
TATGCAGTGCAACATGTATA+GGG + chr4_2:50120097-50120116 None:intergenic 35.0%
! GGTCCATTTTCTACGATATT+CGG + chr4_2:50120131-50120150 None:intergenic 35.0%
TGGCTACAATATGTGTAGTT+TGG + chr4_2:50120152-50120171 None:intergenic 35.0%
! TCTGACATTAGACATGGTTT+TGG + chr4_2:50120172-50120191 None:intergenic 35.0%
!!! ATCACTTGTTTTTACAGCCT+AGG - chr4_2:50120286-50120305 Msa0604510:intron 35.0%
AAATGCACTCATCATAGACA+TGG + chr4_2:50120348-50120367 None:intergenic 35.0%
! GATAAGCATTTTCATGAACC+TGG + chr4_2:50120401-50120420 None:intergenic 35.0%
TCATCAGTTAGCAATACCTT+AGG - chr4_2:50120556-50120575 Msa0604510:intron 35.0%
!!! TCCTTGTTTTTTCTCTTCCA+CGG - chr4_2:50120711-50120730 Msa0604510:intron 35.0%
AGGGAAAAATCTTGCTGAAT+TGG - chr4_2:50120781-50120800 Msa0604510:intron 35.0%
AAGCAGATTATGGGATAAGT+GGG + chr4_2:50120819-50120838 None:intergenic 35.0%
TAAGCAGATTATGGGATAAG+TGG + chr4_2:50120820-50120839 None:intergenic 35.0%
GCTTTATGTAGAGAGAAAGT+AGG + chr4_2:50121360-50121379 None:intergenic 35.0%
! TGATTTTTCTCACCTAGCAA+TGG - chr4_2:50121036-50121055 Msa0604510:intron 35.0%
GTAAGCGGAAGCAAAATAAA+AGG + chr4_2:50121077-50121096 None:intergenic 35.0%
!!! TTTATTTTGCTTCCGCTTAC+TGG - chr4_2:50121077-50121096 Msa0604510:intron 35.0%
ACTAACAACACGTTTAAACC+AGG - chr4_2:50121195-50121214 Msa0604510:CDS 35.0%
! AGATTTTTCTCACCTAGCAA+TGG + chr4_2:50121262-50121281 None:intergenic 35.0%
GCTTTATGTAGAGAGAAAGT+AGG - chr4_2:50121360-50121379 Msa0604510:intron 35.0%
!! AGAACGTGTAACACTTTTTG+AGG - chr4_2:50121449-50121468 Msa0604510:intron 35.0%
!! GAACGTGTAACACTTTTTGA+GGG - chr4_2:50121450-50121469 Msa0604510:intron 35.0%
AGGGAAAAATCTTGCTGAAT+TGG + chr4_2:50120781-50120800 None:intergenic 35.0%
!! TTGGCCTTGTTATAGCTATT+TGG - chr4_2:50121667-50121686 Msa0604510:intron 35.0%
ACGTCCAAATAGCTATAACA+AGG + chr4_2:50121674-50121693 None:intergenic 35.0%
ATGTTTGCAGTTTCTTGATG+TGG - chr4_2:50121822-50121841 Msa0604510:intron 35.0%
TGAACTCCTTATCACTTGTT+TGG - chr4_2:50121854-50121873 Msa0604510:intron 35.0%
AATTCAGTTTGCAAGTCAAG+AGG - chr4_2:50121896-50121915 Msa0604510:intron 35.0%
ATGTGTCCCAAATAAACTTG+TGG - chr4_2:50121925-50121944 Msa0604510:intron 35.0%
GCGTGTCATGGATAATATAT+TGG - chr4_2:50122177-50122196 Msa0604510:intron 35.0%
ACAAAAATACATGAGCTGCA+AGG - chr4_2:50122314-50122333 Msa0604510:intron 35.0%
CAAAAATACATGAGCTGCAA+GGG - chr4_2:50122315-50122334 Msa0604510:intron 35.0%
GAACAAGTGTTTATAAGTGG+GGG + chr4_2:50122628-50122647 None:intergenic 35.0%
CCTGAACAAGTGTTTATAAG+TGG + chr4_2:50122631-50122650 None:intergenic 35.0%
CCACTTATAAACACTTGTTC+AGG - chr4_2:50122628-50122647 Msa0604510:intron 35.0%
GAACAAGTGTTTATAAGTGG+GGG + chr4_2:50122628-50122647 None:intergenic 35.0%
CCAGAACAAGTGTTTATAAG+TGG + chr4_2:50122866-50122885 None:intergenic 35.0%
CCACTTATAAACACTTGTTC+TGG - chr4_2:50122628-50122647 Msa0604510:intron 35.0%
TGTGTTAAAGAGTCCAATGT+GGG + chr4_2:50122900-50122919 None:intergenic 35.0%
!! GGTAATTAAAGGCACCATAA+TGG + chr4_2:50123176-50123195 None:intergenic 35.0%
!! CTACCAAGAAGCTTTAAGAT+TGG - chr4_2:50123234-50123253 Msa0604510:intron 35.0%
GATCCAATCTTAAAGCTTCT+TGG + chr4_2:50123240-50123259 None:intergenic 35.0%
CATTGGAGGAGAAAATGAAA+AGG + chr4_2:50123276-50123295 None:intergenic 35.0%
!!! TGTCATGAAAGTGTTTTCCT+TGG + chr4_2:50123408-50123427 None:intergenic 35.0%
TCCGTGTATAAACATGATTC+TGG + chr4_2:50123467-50123486 None:intergenic 35.0%
TTTGACTAACTTTCTTCAGG+TGG - chr4_2:50123720-50123739 Msa0604510:intron 35.0%
!!! AGTGGCAACTATTGTTTTGA+TGG - chr4_2:50123850-50123869 Msa0604510:intron 35.0%
AGGCTGCATTTGGAAAATTT+AGG - chr4_2:50123999-50124018 Msa0604510:intron 35.0%
GGCTGCATTTGGAAAATTTA+GGG - chr4_2:50124000-50124019 Msa0604510:intron 35.0%
TGCATTTGGAAAATTTAGGG+AGG - chr4_2:50124003-50124022 Msa0604510:intron 35.0%
! CTAGTTTGGTGAAGAATGAA+AGG - chr4_2:50124220-50124239 Msa0604510:CDS 35.0%
GTGAAGAATGAAAGGTGAAA+GGG - chr4_2:50124228-50124247 Msa0604510:CDS 35.0%
GTGAAAGGGAGAATTATACT+TGG - chr4_2:50124242-50124261 Msa0604510:CDS 35.0%
GAAGATGAGTAATGTTACGG+TGG + chr4_2:50117353-50117372 None:intergenic 40.0%
!! TGAACGGTGTTATTGCAGAA+AGG + chr4_2:50117445-50117464 None:intergenic 40.0%
TTCTGCAATAACACCGTTCA+AGG - chr4_2:50117445-50117464 Msa0604510:three_prime_UTR 40.0%
TTCCTTCTTTCCGACAACAA+CGG - chr4_2:50117472-50117491 Msa0604510:three_prime_UTR 40.0%
!! ATTTCCTGTGTCACTTTAGG+AGG - chr4_2:50117536-50117555 Msa0604510:three_prime_UTR 40.0%
TCGAATCACTTGCCTATGTT+TGG - chr4_2:50117920-50117939 Msa0604510:intron 40.0%
CCAAGAATGGAACCAAACAT+AGG + chr4_2:50117935-50117954 None:intergenic 40.0%
! CCTATGTTTGGTTCCATTCT+TGG - chr4_2:50117932-50117951 Msa0604510:intron 40.0%
AATTCTAGACGCTCCAAGAA+TGG + chr4_2:50117948-50117967 None:intergenic 40.0%
!! GGAGCGTCTAGAATTGATTT+TGG - chr4_2:50117953-50117972 Msa0604510:intron 40.0%
GAGAATTTCTTCCCAGTTTG+AGG + chr4_2:50118333-50118352 None:intergenic 40.0%
GGTTAAGACATTACCATTGC+AGG + chr4_2:50118523-50118542 None:intergenic 40.0%
GCGGAAGGTGAAAAATCAAA+AGG + chr4_2:50118548-50118567 None:intergenic 40.0%
GTGAAAAATTCAGCCATTCG+CGG + chr4_2:50118567-50118586 None:intergenic 40.0%
! CGAATGGCTGAATTTTTCAC+CGG - chr4_2:50118567-50118586 Msa0604510:intron 40.0%
! GAATGGCTGAATTTTTCACC+GGG - chr4_2:50118568-50118587 Msa0604510:intron 40.0%
TGCATGTAAACGTAAGGACT+TGG - chr4_2:50118749-50118768 Msa0604510:intron 40.0%
GCATGTAAACGTAAGGACTT+GGG - chr4_2:50118750-50118769 Msa0604510:intron 40.0%
CATGTAAACGTAAGGACTTG+GGG - chr4_2:50118751-50118770 Msa0604510:intron 40.0%
CTGTATCTGGACATACCTAT+TGG + chr4_2:50118966-50118985 None:intergenic 40.0%
TGAAAAGGAAAAAGGGGTAG+GGG + chr4_2:50119016-50119035 None:intergenic 40.0%
GATGAAAAGGAAAAAGGGGT+AGG + chr4_2:50119018-50119037 None:intergenic 40.0%
AGTGTATTTGACTACTGTGC+TGG - chr4_2:50119164-50119183 Msa0604510:intron 40.0%
AATCTAGACATTTGAAGGGG+AGG - chr4_2:50119404-50119423 Msa0604510:intron 40.0%
! CACACATTTTCGCTGTATGA+AGG - chr4_2:50119641-50119660 Msa0604510:intron 40.0%
CTATGCAGTGCAACATGTAT+AGG + chr4_2:50120098-50120117 None:intergenic 40.0%
CTATACATGTTGCACTGCAT+AGG - chr4_2:50120096-50120115 Msa0604510:intron 40.0%
AGTGAGTCTGACATTAGACA+TGG + chr4_2:50120178-50120197 None:intergenic 40.0%
!!! GCTAGCTTTTAGACAATCCT+AGG + chr4_2:50120306-50120325 None:intergenic 40.0%
GACTTACCAGAAGAATTGGA+CGG + chr4_2:50120453-50120472 None:intergenic 40.0%
TGCAGACTTACCAGAAGAAT+TGG + chr4_2:50120457-50120476 None:intergenic 40.0%
!! AACACAATTACAAGGCACTG+AGG + chr4_2:50120490-50120509 None:intergenic 40.0%
!!! AATCCTGTTTTGACCTAGCA+AGG - chr4_2:50120517-50120536 Msa0604510:intron 40.0%
! TTTAGAATCGGTACCTTGCT+AGG + chr4_2:50120533-50120552 None:intergenic 40.0%
!!! CCTTGTTTTTTCTCTTCCAC+GGG - chr4_2:50120712-50120731 Msa0604510:intron 40.0%
! CAGTCAAAGTTGAGTTGTTG+TGG - chr4_2:50120745-50120764 Msa0604510:intron 40.0%
ATAAAACCTTGCCCATCACA+AGG + chr4_2:50120877-50120896 None:intergenic 40.0%
AGTTTGAGCAAGTGAAGGTT+TGG - chr4_2:50120968-50120987 Msa0604510:intron 40.0%
GTTTAAACCAGACCAGTAAG+CGG + chr4_2:50121092-50121111 None:intergenic 40.0%
!!! TTTATTTTGCTTCCGCTTGC+TGG + chr4_2:50121221-50121240 None:intergenic 40.0%
GCAAGCGGAAGCAAAATAAA+AGG - chr4_2:50121221-50121240 Msa0604510:intron 40.0%
!! AGGGAGCGTTAAACAGATTA+TGG - chr4_2:50121469-50121488 Msa0604510:intron 40.0%
!! GGGAGCGTTAAACAGATTAT+GGG - chr4_2:50121470-50121489 Msa0604510:intron 40.0%
!! AAACTCAATATTGGCTCACG+TGG - chr4_2:50121557-50121576 Msa0604510:intron 40.0%
ATTGCAGTCATGCTCTTGTT+AGG - chr4_2:50121601-50121620 Msa0604510:intron 40.0%
TTGCAGTCATGCTCTTGTTA+GGG - chr4_2:50121602-50121621 Msa0604510:intron 40.0%
! GGTTGTAGTTGTACGTCTTT+TGG - chr4_2:50121627-50121646 Msa0604510:intron 40.0%
ACTAGAAACAATACTGAGCG+AGG - chr4_2:50122201-50122220 Msa0604510:intron 40.0%
TTATGACGCCCCAAAGTATA+TGG - chr4_2:50122383-50122402 Msa0604510:intron 40.0%
!! GCTTGGTGTGTGGATATAAA+TGG - chr4_2:50122708-50122727 Msa0604510:intron 40.0%
TGGTGTGTGGATATAAATGG+TGG - chr4_2:50122711-50122730 Msa0604510:intron 40.0%
GGTGTGTGGATATAAATGGT+GGG - chr4_2:50122712-50122731 Msa0604510:intron 40.0%
TACTATCAGGTTTCCGCTAT+CGG + chr4_2:50122742-50122761 None:intergenic 40.0%
!! ACCTCACAAGTCGATTTTGT+GGG + chr4_2:50122832-50122851 None:intergenic 40.0%
GTGTGTTAAAGAGTCCAATG+TGG + chr4_2:50122901-50122920 None:intergenic 40.0%
!! GCTTGGTGCGTAGATATAAA+TGG - chr4_2:50122944-50122963 Msa0604510:intron 40.0%
TGGTGCGTAGATATAAATGG+TGG - chr4_2:50122947-50122966 Msa0604510:intron 40.0%
GGTGCGTAGATATAAATGGT+GGG - chr4_2:50122948-50122967 Msa0604510:intron 40.0%
! CAACCACGATTTCTAAGAAC+TGG - chr4_2:50123103-50123122 Msa0604510:intron 40.0%
ATGCCCTGACATAACCATTA+TGG - chr4_2:50123159-50123178 Msa0604510:CDS 40.0%
GCACCATAATGGTTATGTCA+GGG + chr4_2:50123165-50123184 None:intergenic 40.0%
ATTACCAAACTCCATGTTGG+AGG - chr4_2:50123190-50123209 Msa0604510:intron 40.0%
!! CTTGGTAGTTGATAACCAAC+CGG + chr4_2:50123222-50123241 None:intergenic 40.0%
GGAGAAAATGAAAAGGCAAC+AGG + chr4_2:50123269-50123288 None:intergenic 40.0%
TTTCTCCTCCAATGCTATTG+CGG - chr4_2:50123282-50123301 Msa0604510:CDS 40.0%
!! GCAAAAAAGCACTAAGCACA+GGG + chr4_2:50123545-50123564 None:intergenic 40.0%
! TGTGCTAGATTTTGTTGCAC+TGG - chr4_2:50123812-50123831 Msa0604510:intron 40.0%
! CTAGATTTTGTTGCACTGGA+CGG - chr4_2:50123816-50123835 Msa0604510:intron 40.0%
! TAGATTTTGTTGCACTGGAC+GGG - chr4_2:50123817-50123836 Msa0604510:intron 40.0%
!!! TGTTTTGATGGTATGGAAGG+AGG - chr4_2:50123862-50123881 Msa0604510:intron 40.0%
! TAGCTTTTCCTTTCACGAAC+TGG - chr4_2:50123961-50123980 Msa0604510:intron 40.0%
AGGATGAGATAGAGACACAA+GGG - chr4_2:50124023-50124042 Msa0604510:intron 40.0%
AGACACAAGGGATAGAGAAT+AGG - chr4_2:50124035-50124054 Msa0604510:intron 40.0%
GGGATAGAGAATAGGCTAAA+TGG - chr4_2:50124043-50124062 Msa0604510:intron 40.0%
GGTGAAGAATGAAAGGTGAA+AGG - chr4_2:50124227-50124246 Msa0604510:CDS 40.0%
AAGAAGGAACCTGCCTTGAA+CGG + chr4_2:50117461-50117480 None:intergenic 45.0%
TACCGTTGTTGTCGGAAAGA+AGG + chr4_2:50117477-50117496 None:intergenic 45.0%
TCTTTCCGACAACAACGGTA+TGG - chr4_2:50117477-50117496 Msa0604510:three_prime_UTR 45.0%
GGATACCATACCGTTGTTGT+CGG + chr4_2:50117485-50117504 None:intergenic 45.0%
GATACCTCCTAAAGTGACAC+AGG + chr4_2:50117543-50117562 None:intergenic 45.0%
TATGTTACCGGTGTTCGTGT+CGG + chr4_2:50117581-50117600 None:intergenic 45.0%
!! TGTCAGGGTCTTGTTGATGT+CGG - chr4_2:50117619-50117638 Msa0604510:three_prime_UTR 45.0%
CGGTTCTATGGTGACACAAA+TGG + chr4_2:50118232-50118251 None:intergenic 45.0%
TCTCGTTGTTGTCCTCAAAC+TGG - chr4_2:50118318-50118337 Msa0604510:intron 45.0%
CTCGTTGTTGTCCTCAAACT+GGG - chr4_2:50118319-50118338 Msa0604510:intron 45.0%
TTGCTGTCTCAATCCTGCAA+TGG - chr4_2:50118507-50118526 Msa0604510:intron 45.0%
! GATTTTTCACCTTCCGCGAA+TGG - chr4_2:50118551-50118570 Msa0604510:intron 45.0%
AAAATTCAGCCATTCGCGGA+AGG + chr4_2:50118563-50118582 None:intergenic 45.0%
TGTCAAGCGTTAACGCCAAT+AGG - chr4_2:50118948-50118967 Msa0604510:intron 45.0%
GAAAAGGAAAAAGGGGTAGG+GGG + chr4_2:50119015-50119034 None:intergenic 45.0%
ACTACTGTGCTGGAAGATGT+CGG - chr4_2:50119174-50119193 Msa0604510:intron 45.0%
TTAGCGTGTCTTGAATGCGT+AGG + chr4_2:50119520-50119539 None:intergenic 45.0%
TTAGCGTGTCTTGAATGCGT+AGG + chr4_2:50119520-50119539 None:intergenic 45.0%
CTGAGAATTTAGGCGACACA+TGG - chr4_2:50119797-50119816 Msa0604510:intron 45.0%
ACGGTAGAGAAAAGCAATGG+TGG + chr4_2:50120434-50120453 None:intergenic 45.0%
TGGACGGTAGAGAAAAGCAA+TGG + chr4_2:50120437-50120456 None:intergenic 45.0%
TCTCTACCGTCCAATTCTTC+TGG - chr4_2:50120444-50120463 Msa0604510:intron 45.0%
GTACCTTGCTAGGTCAAAAC+AGG + chr4_2:50120523-50120542 None:intergenic 45.0%
!!! ACTGTTTTTGCCCAGACTGA+AGG - chr4_2:50120590-50120609 Msa0604510:intron 45.0%
TTACCACTCTCCTTCAGTCT+GGG + chr4_2:50120603-50120622 None:intergenic 45.0%
ATTACCACTCTCCTTCAGTC+TGG + chr4_2:50120604-50120623 None:intergenic 45.0%
CCCGTGGAAGAGAAAAAACA+AGG + chr4_2:50120715-50120734 None:intergenic 45.0%
!! GGGAGCGTTAAGCAGATTAT+GGG + chr4_2:50120828-50120847 None:intergenic 45.0%
!! AGGGAGCGTTAAGCAGATTA+TGG + chr4_2:50120829-50120848 None:intergenic 45.0%
ACATTCTCCAGACCTTGTGA+TGG - chr4_2:50120862-50120881 Msa0604510:intron 45.0%
CATTCTCCAGACCTTGTGAT+GGG - chr4_2:50120863-50120882 Msa0604510:intron 45.0%
CTTCACTTGCTCAAACTCGA+TGG + chr4_2:50121333-50121352 None:intergenic 45.0%
CATCGAGTTTGAGCAAGTGA+AGG - chr4_2:50120963-50120982 Msa0604510:intron 45.0%
! TTTGGAACAGCGAAACAGTC+CGG - chr4_2:50120986-50121005 Msa0604510:intron 45.0%
! TTTTCTCACCTAGCAATGGC+TGG - chr4_2:50121040-50121059 Msa0604510:intron 45.0%
ACTAACATCCAGCCATTGCT+AGG - chr4_2:50121247-50121266 Msa0604510:intron 45.0%
! TTTTCTCACCTAGCAATGGC+TGG + chr4_2:50121040-50121059 None:intergenic 45.0%
CATCGAGTTTGAGCAAGTGA+AGG + chr4_2:50120963-50120982 None:intergenic 45.0%
CTTCACTTGCTCAAACTCGA+TGG - chr4_2:50121333-50121352 Msa0604510:intron 45.0%
! ATAGAGCCTTGTCCATCACA+AGG - chr4_2:50121421-50121440 Msa0604510:intron 45.0%
!! TTCAGACCTTGTGATGGACA+AGG + chr4_2:50121430-50121449 None:intergenic 45.0%
ACGTTCTTCAGACCTTGTGA+TGG + chr4_2:50121436-50121455 None:intergenic 45.0%
GGGATAAGTGGGAAAAGAAG+TGG - chr4_2:50121490-50121509 Msa0604510:intron 45.0%
TGCAGTCATGCTCTTGTTAG+GGG - chr4_2:50121603-50121622 Msa0604510:intron 45.0%
ATAGCACTCTCACAGAAGCA+AGG - chr4_2:50121730-50121749 Msa0604510:intron 45.0%
TTTACCTCCCAGCAACAACA+TGG + chr4_2:50121767-50121786 None:intergenic 45.0%
CTCCTTATCACTTGTTTGGC+AGG - chr4_2:50121858-50121877 Msa0604510:intron 45.0%
TGCCTGCCAAACAAGTGATA+AGG + chr4_2:50121863-50121882 None:intergenic 45.0%
TATCACTTGTTTGGCAGGCA+AGG - chr4_2:50121863-50121882 Msa0604510:intron 45.0%
TATACGTCTAATGCACAGCG+CGG + chr4_2:50122048-50122067 None:intergenic 45.0%
AAATACATGAGCTGCAAGGG+AGG - chr4_2:50122318-50122337 Msa0604510:intron 45.0%
GCGTCATAAACAACTTCAGC+AGG + chr4_2:50122372-50122391 None:intergenic 45.0%
CTAACACAACCCCACAAAAC+CGG - chr4_2:50122584-50122603 Msa0604510:intron 45.0%
ACACCAAGCCCAATAGTGTT+GGG + chr4_2:50122697-50122716 None:intergenic 45.0%
!! GATAGCGGAAACCTGATAGT+AGG - chr4_2:50122741-50122760 Msa0604510:intron 45.0%
! CGATTTTGTGGGGTTGTGTA+GGG + chr4_2:50122821-50122840 None:intergenic 45.0%
! TCGATTTTGTGGGGTTGTGT+AGG + chr4_2:50122822-50122841 None:intergenic 45.0%
!! CCTCACAAGTCGATTTTGTG+GGG + chr4_2:50122831-50122850 None:intergenic 45.0%
!! CACCTCACAAGTCGATTTTG+TGG + chr4_2:50122833-50122852 None:intergenic 45.0%
GTCCAATGTGGGATAAGAGA+TGG + chr4_2:50122889-50122908 None:intergenic 45.0%
GCACCAAGCCCAATAGTATT+GGG + chr4_2:50122933-50122952 None:intergenic 45.0%
! GCGTAGATATAAATGGTGGG+TGG - chr4_2:50122951-50122970 Msa0604510:intron 45.0%
CTAACACAGCCTCACAAAAC+CGG + chr4_2:50123080-50123099 None:intergenic 45.0%
GGCACCATAATGGTTATGTC+AGG + chr4_2:50123166-50123185 None:intergenic 45.0%
!! GGCAAAAAAGCACTAAGCAC+AGG + chr4_2:50123546-50123565 None:intergenic 45.0%
!!! GTGCTTAGTGCTTTTTTGCC+TGG - chr4_2:50123546-50123565 Msa0604510:intron 45.0%
AAAAGGGAACACAGCTTACC+AGG + chr4_2:50123567-50123586 None:intergenic 45.0%
CGTTCTTTCCAGTTCGTGAA+AGG + chr4_2:50123972-50123991 None:intergenic 45.0%
ACTGGAAAGAACGCTACTTC+AGG - chr4_2:50123979-50123998 Msa0604510:intron 45.0%
GAGGATGAGATAGAGACACA+AGG - chr4_2:50124022-50124041 Msa0604510:intron 45.0%
!!! TGTTTTAAAAAAAAAAAAAA+TGG + chr4_2:50119110-50119129 None:intergenic 5.0%
GCAATAACACCGTTCAAGGC+AGG - chr4_2:50117449-50117468 Msa0604510:three_prime_UTR 50.0%
!! TCGGCATAGTTCTGAGAGTG+TGG - chr4_2:50119193-50119212 Msa0604510:intron 50.0%
!! TGACTGAATATTGGCTCCCG+TGG + chr4_2:50120731-50120750 None:intergenic 50.0%
ACTAACCTCCAGCCATTGCT+AGG + chr4_2:50121051-50121070 None:intergenic 50.0%
TTTGCTTCCGCTTACTGGTC+TGG - chr4_2:50121082-50121101 Msa0604510:intron 50.0%
GTTTAAACCAGGCCAGCAAG+CGG - chr4_2:50121206-50121225 Msa0604510:CDS 50.0%
! CTGCTTGCTGCTGCTATAAC+CGG - chr4_2:50121290-50121309 Msa0604510:intron 50.0%
AGTCATGCTCTTGTTAGGGG+TGG - chr4_2:50121606-50121625 Msa0604510:intron 50.0%
!! GTGAGAGTGCTATTTGCCAC+TGG + chr4_2:50121723-50121742 None:intergenic 50.0%
CTCACAGAAGCAAGGCTGAA+CGG - chr4_2:50121738-50121757 Msa0604510:intron 50.0%
AACGGCATCCATGTTGTTGC+TGG - chr4_2:50121756-50121775 Msa0604510:intron 50.0%
ACGGCATCCATGTTGTTGCT+GGG - chr4_2:50121757-50121776 Msa0604510:intron 50.0%
TAGTGCTTGGTTGCGTGTCA+TGG - chr4_2:50122165-50122184 Msa0604510:intron 50.0%
AGGTCATCTCTCAACCGATG+TGG - chr4_2:50122648-50122667 Msa0604510:intron 50.0%
GGTCATCTCTCAACCGATGT+GGG - chr4_2:50122649-50122668 Msa0604510:intron 50.0%
GTCATCTCTCAACCGATGTG+GGG - chr4_2:50122650-50122669 Msa0604510:intron 50.0%
GGTGTTAAAGAGCCCCACAT+CGG + chr4_2:50122665-50122684 None:intergenic 50.0%
! AATAGTGTTGGGCATGAGGG+GGG + chr4_2:50122686-50122705 None:intergenic 50.0%
! CAATAGTGTTGGGCATGAGG+GGG + chr4_2:50122687-50122706 None:intergenic 50.0%
! CCAATAGTGTTGGGCATGAG+GGG + chr4_2:50122688-50122707 None:intergenic 50.0%
! CCCAATAGTGTTGGGCATGA+GGG + chr4_2:50122689-50122708 None:intergenic 50.0%
CCCTCATGCCCAACACTATT+GGG - chr4_2:50122686-50122705 Msa0604510:intron 50.0%
ATGCCCAACACTATTGGGCT+TGG - chr4_2:50122691-50122710 Msa0604510:intron 50.0%
CACACCAAGCCCAATAGTGT+TGG + chr4_2:50122698-50122717 None:intergenic 50.0%
!! ACACTATTGGGCTTGGTGTG+TGG - chr4_2:50122698-50122717 Msa0604510:intron 50.0%
!! AATGGTGGGTGATCCGATAG+CGG - chr4_2:50122726-50122745 Msa0604510:intron 50.0%
AGCCTCTCCAAGATCTGTTG+GGG + chr4_2:50122769-50122788 None:intergenic 50.0%
GAGCCTCTCCAAGATCTGTT+GGG + chr4_2:50122770-50122789 None:intergenic 50.0%
AGAGCCTCTCCAAGATCTGT+TGG + chr4_2:50122771-50122790 None:intergenic 50.0%
!! CCCCACAAAATCGACTTGTG+AGG - chr4_2:50122828-50122847 Msa0604510:intron 50.0%
GGCCATCTCTTATCCCACAT+TGG - chr4_2:50122884-50122903 Msa0604510:intron 50.0%
! CAATAGTATTGGGCGTGAGG+GGG + chr4_2:50122923-50122942 None:intergenic 50.0%
! CCAATAGTATTGGGCGTGAG+GGG + chr4_2:50122924-50122943 None:intergenic 50.0%
! CCCAATAGTATTGGGCGTGA+GGG + chr4_2:50122925-50122944 None:intergenic 50.0%
CCCTCACGCCCAATACTATT+GGG - chr4_2:50122922-50122941 Msa0604510:intron 50.0%
ACGCCCAATACTATTGGGCT+TGG - chr4_2:50122927-50122946 Msa0604510:intron 50.0%
CGCACCAAGCCCAATAGTAT+TGG + chr4_2:50122934-50122953 None:intergenic 50.0%
!! GATAGCGGAAACCTGATAGC+AGG - chr4_2:50122977-50122996 Msa0604510:intron 50.0%
TGAACGCAACCCCACAAAAC+CGG - chr4_2:50123027-50123046 Msa0604510:intron 50.0%
!! CATCGCAAACCGGTTTTGTG+AGG - chr4_2:50123068-50123087 Msa0604510:intron 50.0%
!! CGGTTTTGTGAGGCTGTGTT+AGG - chr4_2:50123078-50123097 Msa0604510:intron 50.0%
GCGCCAGTTCTTAGAAATCG+TGG + chr4_2:50123109-50123128 None:intergenic 50.0%
ACCAAACTCCATGTTGGAGG+TGG - chr4_2:50123193-50123212 Msa0604510:intron 50.0%
ACCACCTCCAACATGGAGTT+TGG + chr4_2:50123197-50123216 None:intergenic 50.0%
TAGCGCTACCGCAATAGCAT+TGG + chr4_2:50123293-50123312 None:intergenic 50.0%
AATGCTATTGCGGTAGCGCT+AGG - chr4_2:50123292-50123311 Msa0604510:CDS 50.0%
ATGGTTCGCATCAGCACACA+AGG - chr4_2:50123510-50123529 Msa0604510:intron 50.0%
ACGCTACTTCAGGCTGCATT+TGG - chr4_2:50123989-50124008 Msa0604510:intron 50.0%
!! TGAAGCACCGACACGAACAC+CGG - chr4_2:50117571-50117590 Msa0604510:three_prime_UTR 55.0%
TTGCCCAGACTGAAGGAGAG+TGG - chr4_2:50120597-50120616 Msa0604510:intron 55.0%
!! TCCAGACCTTGTGATGGGCA+AGG - chr4_2:50120868-50120887 Msa0604510:intron 55.0%
ACCTTGCCCATCACAAGGTC+TGG + chr4_2:50120872-50120891 None:intergenic 55.0%
! CTGCTTGCTGCTGCTCTAAC+CGG + chr4_2:50121008-50121027 None:intergenic 55.0%
TCTCACCTAGCAATGGCTGG+AGG - chr4_2:50121043-50121062 Msa0604510:intron 55.0%
GCATCCATGTTGTTGCTGGG+AGG - chr4_2:50121760-50121779 Msa0604510:intron 55.0%
GGAGGTTGCTTGGCAAGTGT+TGG - chr4_2:50122336-50122355 Msa0604510:intron 55.0%
CCCCTCATGCCCAACACTAT+TGG - chr4_2:50122685-50122704 Msa0604510:intron 55.0%
! GCCCAATAGTGTTGGGCATG+AGG + chr4_2:50122690-50122709 None:intergenic 55.0%
! CTGTTGGGGCACCTACTATC+AGG + chr4_2:50122755-50122774 None:intergenic 55.0%
GTAGGTGCCCCAACAGATCT+TGG - chr4_2:50122759-50122778 Msa0604510:intron 55.0%
TGCCCCAACAGATCTTGGAG+AGG - chr4_2:50122764-50122783 Msa0604510:intron 55.0%
CCCCTCACGCCCAATACTAT+TGG - chr4_2:50122921-50122940 Msa0604510:intron 55.0%
! GCCCAATAGTATTGGGCGTG+AGG + chr4_2:50122926-50122945 None:intergenic 55.0%
!! AATGGTGGGTGGCTCGATAG+CGG - chr4_2:50122962-50122981 Msa0604510:intron 55.0%
AGCGGAAACCTGATAGCAGG+TGG - chr4_2:50122980-50122999 Msa0604510:intron 55.0%
AGCCTCCTCCAAGATCCGTT+GGG + chr4_2:50123006-50123025 None:intergenic 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG + chr4_2:50123039-50123058 None:intergenic 55.0%
!! GCCTCACAAGCCGGTTTTGT+GGG + chr4_2:50123040-50123059 None:intergenic 55.0%
GCGAGGATTGCATCGCAAAC+CGG - chr4_2:50123058-50123077 Msa0604510:intron 55.0%
TCCATGTTGGAGGTGGTGTC+CGG - chr4_2:50123200-50123219 Msa0604510:intron 55.0%
! CGCTACCGCAATAGCATTGG+AGG + chr4_2:50123290-50123309 None:intergenic 55.0%
! TTTTGTTGCACTGGACGGGC+TGG - chr4_2:50123821-50123840 Msa0604510:intron 55.0%
! TTTGCTTCCGCTTGCTGGCC+TGG + chr4_2:50121216-50121235 None:intergenic 60.0%
GAGCTGCAAGGGAGGTTGCT+TGG - chr4_2:50122326-50122345 Msa0604510:intron 60.0%
!! ACCTCGCAGGCCGGTTTTGT+GGG + chr4_2:50122597-50122616 None:intergenic 60.0%
CCTGATAGCAGGTGGCCCAA+CGG - chr4_2:50122988-50123007 Msa0604510:CDS 60.0%
GAGCCTCCTCCAAGATCCGT+TGG + chr4_2:50123007-50123026 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG - chr4_2:50123036-50123055 Msa0604510:intron 60.0%
!! CGCCTCACAAGCCGGTTTTG+TGG + chr4_2:50123041-50123060 None:intergenic 60.0%
!! CAAAACCGGCTTGTGAGGCG+AGG - chr4_2:50123041-50123060 Msa0604510:intron 60.0%
GCAATCCTCGCCTCACAAGC+CGG + chr4_2:50123049-50123068 None:intergenic 60.0%
ACCGGACACCACCTCCAACA+TGG + chr4_2:50123204-50123223 None:intergenic 60.0%
TGTTGGAGGTGGTGTCCGGT+TGG - chr4_2:50123204-50123223 Msa0604510:intron 60.0%
GCTATTGCGGTAGCGCTAGG+CGG - chr4_2:50123295-50123314 Msa0604510:CDS 60.0%
CTATTGCGGTAGCGCTAGGC+GGG - chr4_2:50123296-50123315 Msa0604510:CDS 60.0%
!! TGGACGGGCTGGTATCGAAG+TGG - chr4_2:50123832-50123851 Msa0604510:intron 60.0%
!! CCTCGCAGGCCGGTTTTGTG+GGG + chr4_2:50122596-50122615 None:intergenic 65.0%
!! CACCTCGCAGGCCGGTTTTG+TGG + chr4_2:50122598-50122617 None:intergenic 65.0%
CAAAACCGGCCTGCGAGGTG+AGG - chr4_2:50122598-50122617 Msa0604510:intron 65.0%
GCAATCCTCACCTCGCAGGC+CGG + chr4_2:50122606-50122625 None:intergenic 65.0%
CCGTTGGGCCACCTGCTATC+AGG + chr4_2:50122991-50123010 None:intergenic 65.0%
GCAGGTGGCCCAACGGATCT+TGG - chr4_2:50122995-50123014 Msa0604510:CDS 65.0%
GGTGGCCCAACGGATCTTGG+AGG - chr4_2:50122998-50123017 Msa0604510:CDS 65.0%
GGCCCAACGGATCTTGGAGG+AGG - chr4_2:50123001-50123020 Msa0604510:CDS 65.0%
CCCCACAAAACCGGCCTGCG+AGG - chr4_2:50122593-50122612 Msa0604510:intron 70.0%
GGGGGCAATCCTCACCTCGC+AGG + chr4_2:50122610-50122629 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 50117328 50124312 50117328 ID=Msa0604510;Name=Msa0604510
chr4_2 mRNA 50117328 50124312 50117328 ID=Msa0604510-mRNA-1;Parent=Msa0604510;Name=Msa0604510-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.5|0.61|0.84|0.66|0.61|13|402|326
chr4_2 exon 50117328 50117820 50117328 ID=Msa0604510-mRNA-1:exon:11773;Parent=Msa0604510-mRNA-1
chr4_2 exon 50117895 50117901 50117895 ID=Msa0604510-mRNA-1:exon:11772;Parent=Msa0604510-mRNA-1
chr4_2 exon 50118073 50118179 50118073 ID=Msa0604510-mRNA-1:exon:11771;Parent=Msa0604510-mRNA-1
chr4_2 exon 50118337 50118377 50118337 ID=Msa0604510-mRNA-1:exon:11770;Parent=Msa0604510-mRNA-1
chr4_2 exon 50119236 50119329 50119236 ID=Msa0604510-mRNA-1:exon:11769;Parent=Msa0604510-mRNA-1
chr4_2 exon 50119674 50119760 50119674 ID=Msa0604510-mRNA-1:exon:11768;Parent=Msa0604510-mRNA-1
chr4_2 exon 50119859 50119916 50119859 ID=Msa0604510-mRNA-1:exon:11767;Parent=Msa0604510-mRNA-1
chr4_2 exon 50121142 50121238 50121142 ID=Msa0604510-mRNA-1:exon:11766;Parent=Msa0604510-mRNA-1
chr4_2 exon 50122426 50122487 50122426 ID=Msa0604510-mRNA-1:exon:11765;Parent=Msa0604510-mRNA-1
chr4_2 exon 50122985 50123036 50122985 ID=Msa0604510-mRNA-1:exon:11764;Parent=Msa0604510-mRNA-1
chr4_2 exon 50123112 50123184 50123112 ID=Msa0604510-mRNA-1:exon:11763;Parent=Msa0604510-mRNA-1
chr4_2 exon 50123282 50123322 50123282 ID=Msa0604510-mRNA-1:exon:11762;Parent=Msa0604510-mRNA-1
chr4_2 exon 50124142 50124312 50124142 ID=Msa0604510-mRNA-1:exon:11761;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50124142 50124312 50124142 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50123282 50123322 50123282 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50123112 50123184 50123112 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50122985 50123036 50122985 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50122426 50122487 50122426 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50121142 50121238 50121142 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50119859 50119916 50119859 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50119674 50119760 50119674 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50119236 50119329 50119236 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50118337 50118377 50118337 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50118073 50118179 50118073 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50117895 50117901 50117895 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 CDS 50117730 50117820 50117730 ID=Msa0604510-mRNA-1:cds;Parent=Msa0604510-mRNA-1
chr4_2 three_prime_UTR 50117328 50117729 50117328 ID=Msa0604510-mRNA-1:three_prime_utr;Parent=Msa0604510-mRNA-1
Gene Sequence

>Msa0604510

ATGGGACACTCTGCATCTAAAACCACCGTAACATTACTCATCTTCATCTTCTTGTTCATCTCTGAATTTTCATTCACCATCGCTATCAGAAAAGATATTGGCTTCAAATTCATTCCTTTCTGCAATAACACCGTTCAAGGCAGGTTCCTTCTTTCCGACAACAACGGTATGTCTCGTTGTTGTCCTCAAACTGGGAAGAAATTCTCTTGTCATGGATGCAATCTTCTTTCACAGTGTTGCAACTCTTATGAATATTGTGTTTCTTGCTGTCTCAATCCTGCAATGACAAAGAAGGAACACGTGTTGAAGATGAAGATAGCTAAACCTTCTACTGCAAGGACTTATGAAAGTGTATTTGACTACTGTGCTGGAAGATGTCGGCATAGTTCTGAGAGTGTGGTTCATGAAAATGCTTATCTTAGTGACTTCCACCATTGCTTTTCTCTACCGTCCAATTCTTCTGGTAAGTCTGCAGATTTGTATGCCTCAGTGCCTTTGGCAAATAGCACTCTCACAGAAGCAAGGCTGAACGGCATCCATGTTGTTGCTGGGAGGCAAGGTGAATCGTGTAATTCAGTTTGCAAGTCAAGAGGACAATCATGTGTCCCAAATAAACTTGTGGTGCTTAATCATTGTGACATTATACAAAAATACATGAGCTGCAAGGGAGGTTGCTTGGCAAGTGTTGGCACAGATCAACCTGCTGAAGTTGTTTATGACGCCCCAAAGTATATGTCACCTGTTGCCTTTTCATTTTCTCCTCCAATGCTATTGCGAATCCAGAATCATGTTTATACACGGAAACACAATCTATACTTTCTTGTGATGGTTCGCATCAGCACACAAGGAGACTGTGTCCCTGTGCTTAGTGCTTTTTTGCCTGGTGGAAAATTTTGTTGCACTGGACGGGCTGGTATCGAAGTGGCAACTATTGTTTTGATGGTATGGAAGGAGGAAACTAGTGCAAAGCATCAACCTTGA

Protein sequence

>Msa0604510

MGHSASKTTVTLLIFIFLFISEFSFTIAIRKDIGFKFIPFCNNTVQGRFLLSDNNGMSRCCPQTGKKFSCHGCNLLSQCCNSYEYCVSCCLNPAMTKKEHVLKMKIAKPSTARTYESVFDYCAGRCRHSSESVVHENAYLSDFHHCFSLPSNSSGKSADLYASVPLANSTLTEARLNGIHVVAGRQGESCNSVCKSRGQSCVPNKLVVLNHCDIIQKYMSCKGGCLASVGTDQPAEVVYDAPKYMSPVAFSFSPPMLLRIQNHVYTRKHNLYFLVMVRISTQGDCVPVLSAFLPGGKFCCTGRAGIEVATIVLMVWKEETSAKHQP*