AlfalfaGEDB | Msa0482080

M. sativa cultivar zhongmu-4 / Msa0482080

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482080	XP_024636952.1	97.428	311	7	1	1	310	1	311	0.0	628

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482080	A0A396ID57	97.428	311	7	1	1	310	1	311	0.0	628

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0009780	Msa0482080	0.801459	8.917258e-49	-8.615850e-47
Msa0015150	Msa0482080	0.851076	1.123307e-60	-8.615850e-47
Msa0025160	Msa0482080	0.801718	7.887208e-49	-8.615850e-47
Msa0029960	Msa0482080	0.828106	1.080894e-54	-8.615850e-47
Msa0050660	Msa0482080	0.829727	4.379383e-55	-8.615850e-47
Msa0050700	Msa0482080	0.831558	1.559389e-55	-8.615850e-47
Msa0050790	Msa0482080	0.814296	1.655832e-51	-8.615850e-47
Msa0064120	Msa0482080	0.824243	8.969119e-54	-8.615850e-47
Msa0071850	Msa0482080	0.809423	1.905881e-50	-8.615850e-47
Msa0071860	Msa0482080	0.800934	1.141884e-48	-8.615850e-47
Msa0072520	Msa0482080	0.825163	5.444939e-54	-8.615850e-47
Msa0093860	Msa0482080	0.801810	7.553144e-49	-8.615850e-47
Msa0108880	Msa0482080	0.841523	4.512899e-58	-8.615850e-47
Msa0155180	Msa0482080	0.844327	8.098207e-59	-8.615850e-47
Msa0161930	Msa0482080	0.807698	4.451492e-50	-8.615850e-47
Msa0188610	Msa0482080	0.805982	1.025912e-49	-8.615850e-47
Msa0230870	Msa0482080	0.815816	7.615859e-52	-8.615850e-47
Msa0382740	Msa0482080	0.821871	3.207105e-53	-8.615850e-47
Msa0382770	Msa0482080	0.813702	2.239087e-51	-8.615850e-47
Msa0384870	Msa0482080	0.816369	5.730981e-52	-8.615850e-47
Msa0420680	Msa0482080	0.815383	9.509209e-52	-8.615850e-47
Msa0433760	Msa0482080	0.800734	1.254063e-48	-8.615850e-47
Msa0451170	Msa0482080	0.809933	1.481148e-50	-8.615850e-47
Msa0460550	Msa0482080	0.806359	8.546227e-50	-8.615850e-47
Msa0466520	Msa0482080	0.829872	4.037010e-55	-8.615850e-47
Msa0482080	Msa0486460	0.819122	1.371036e-52	-8.615850e-47
Msa0482080	Msa0506920	0.801399	9.172872e-49	-8.615850e-47
Msa0482080	Msa0513080	0.827287	1.699999e-54	-8.615850e-47
Msa0482080	Msa0520870	0.813925	2.000016e-51	-8.615850e-47
Msa0482080	Msa0524800	0.809502	1.833573e-50	-8.615850e-47
Msa0482080	Msa0525000	0.819043	1.428738e-52	-8.615850e-47
Msa0482080	Msa0557850	0.809700	1.662242e-50	-8.615850e-47
Msa0482080	Msa0562350	0.815488	9.008952e-52	-8.615850e-47
Msa0482080	Msa0607330	0.807161	5.787210e-50	-8.615850e-47
Msa0482080	Msa0609300	0.806171	9.364098e-50	-8.615850e-47
Msa0482080	Msa0612520	0.812448	4.218806e-51	-8.615850e-47
Msa0482080	Msa0616210	0.813420	2.582881e-51	-8.615850e-47
Msa0482080	Msa0619710	0.804558	2.039010e-49	-8.615850e-47
Msa0482080	Msa0653160	0.805379	1.373529e-49	-8.615850e-47
Msa0482080	Msa0655700	0.820831	5.571002e-53	-8.615850e-47
Msa0482080	Msa0687090	0.825284	5.096595e-54	-8.615850e-47
Msa0482080	Msa0690320	0.801585	8.399836e-49	-8.615850e-47
Msa0482080	Msa0691270	0.812977	3.230390e-51	-8.615850e-47
Msa0482080	Msa0691910	0.808693	2.732026e-50	-8.615850e-47
Msa0482080	Msa0695560	0.820969	5.179047e-53	-8.615850e-47
Msa0482080	Msa0699540	0.813592	2.367788e-51	-8.615850e-47
Msa0482080	Msa0706150	0.824628	7.280844e-54	-8.615850e-47
Msa0482080	Msa0714520	0.805278	1.441855e-49	-8.615850e-47
Msa0482080	Msa0989500	0.806919	6.510428e-50	-8.615850e-47
Msa0482080	Msa1029800	0.809549	1.790812e-50	-8.615850e-47
Msa0482080	Msa1068920	0.801831	7.479109e-49	-8.615850e-47
Msa0482080	Msa1078820	0.812100	5.024665e-51	-8.615850e-47
Msa0482080	Msa1079640	0.810481	1.128317e-50	-8.615850e-47
Msa0482080	Msa1104220	0.805772	1.136172e-49	-8.615850e-47
Msa0482080	Msa1123970	0.814130	1.801908e-51	-8.615850e-47
Msa0482080	Msa1124470	0.812026	5.213893e-51	-8.615850e-47
Msa0482080	Msa1130780	0.808372	3.199877e-50	-8.615850e-47
Msa0482080	Msa1131150	0.815967	7.046678e-52	-8.615850e-47
Msa0482080	Msa1169650	0.813040	3.129598e-51	-8.615850e-47
Msa0482080	Msa1187760	0.832032	1.191643e-55	-8.615850e-47
Msa0482080	Msa1209320	0.980353	5.057667e-150	-8.615850e-47
Msa0482080	Msa1209720	0.942124	1.251347e-101	-8.615850e-47
Msa0482080	Msa1228630	0.810987	8.768613e-51	-8.615850e-47
Msa0482080	Msa1263740	0.802231	6.188753e-49	-8.615850e-47
Msa0482080	Msa1263780	0.802019	6.842354e-49	-8.615850e-47
Msa0482080	Msa1299980	0.808572	2.899518e-50	-8.615850e-47
Msa0482080	Msa1322390	0.806444	8.200436e-50	-8.615850e-47
Msa0482080	Msa1342810	0.822073	2.879245e-53	-8.615850e-47
Msa0482080	Msa1356220	0.825895	3.653133e-54	-8.615850e-47
Msa0482080	Msa1364410	0.821361	4.206081e-53	-8.615850e-47
Msa0482080	Msa1384460	0.800150	1.649611e-48	-8.615850e-47
Msa0482080	Msa1406720	0.829794	4.217608e-55	-8.615850e-47
Msa0482080	Msa1440630	0.816956	4.233148e-52	-8.615850e-47
Msa0272260	Msa0482080	0.804155	2.474491e-49	-8.615850e-47
Msa0359010	Msa0482080	0.804704	1.901253e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482080	MtrunA17_Chr4g0058901	97.428	311	7	1	1	310	1	311	0.0	628
Msa0482080	MtrunA17_Chr4g0069121	36.434	258	145	9	31	285	34	275	7.02e-47	159
Msa0482080	MtrunA17_Chr5g0415341	28.467	274	166	10	14	274	10	266	6.84e-26	104
Msa0482080	MtrunA17_Chr8g0381971	27.174	276	166	10	11	274	10	262	1.60e-23	97.8
Msa0482080	MtrunA17_Chr2g0288891	27.925	265	161	10	28	279	21	268	2.17e-19	87.0
Msa0482080	MtrunA17_Chr4g0075211	24.913	289	177	10	31	304	38	301	1.09e-15	76.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482080	AT5G50290.1	63.390	295	101	3	12	303	3	293	1.17e-143	407
Msa0482080	AT3G17350.1	28.315	279	190	5	30	307	30	299	7.19e-39	139
Msa0482080	AT3G17350.2	31.452	248	158	6	30	274	30	268	5.07e-38	136
Msa0482080	AT1G10380.1	29.010	293	175	11	29	306	27	301	5.95e-26	105
Msa0482080	AT1G10380.2	30.588	255	153	9	31	274	29	270	1.47e-25	103
Msa0482080	AT1G11915.1	27.431	288	178	9	1	274	1	271	5.48e-22	94.7

Find 105 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTGCATGGCAAATGTTTATC+AGG	0.193615	3_3:+88521383	None:intergenic
TTGCCATGCAGAAATGTTTC+TGG	0.200621	3_3:-88521371	Msa0482080:CDS
TGTATCTTATGAAGCTATTA+AGG	0.212607	3_3:-88521243	Msa0482080:CDS
GCATACTATGCCATACTTCT+TGG	0.280548	3_3:+88520242	None:intergenic
TCGGGTGTTGGGTTCATGTA+TGG	0.280996	3_3:+88521461	None:intergenic
TGATCATTTGTGTGTAAATA+AGG	0.286721	3_3:+88520033	None:intergenic
TGATGAGTGTAGAAATTTAT+TGG	0.288606	3_3:+88521867	None:intergenic
CCTCGTTCACCTTTGTTTCA+AGG	0.290171	3_3:-88521410	Msa0482080:CDS
TCTTGCTCCCGATGATAATA+AGG	0.303286	3_3:+88520628	None:intergenic
CTGGGTGGCCACATCCGTTT+TGG	0.303374	3_3:+88521672	None:intergenic
GGACCTAGTGATTGGACTTA+TGG	0.306537	3_3:-88521149	Msa0482080:CDS
ATGCAACTATCATCATAAAC+TGG	0.307234	3_3:-88520223	Msa0482080:three_prime_UTR
ATGGAAGGTAGTGAAGAATT+TGG	0.310791	3_3:+88521805	None:intergenic
TGTAAATAAGGTTAGGGATA+TGG	0.315987	3_3:+88520045	None:intergenic
AGAACAAAGTATTCAATTTG+TGG	0.358588	3_3:-88520002	Msa0482080:three_prime_UTR
TTATAGTGTTGCACCTTTGA+AGG	0.365560	3_3:-88521177	Msa0482080:CDS
GGACTTATGGGATCCGTGTT+AGG	0.370153	3_3:-88521136	Msa0482080:CDS
CGGGTGTTGGGTTCATGTAT+GGG	0.379624	3_3:+88521462	None:intergenic
TGTGGTGCTTGTCAGGCTAC+TGG	0.380371	3_3:-88521086	Msa0482080:CDS
GACCGCGAAACCGTTGCCTT+TGG	0.382428	3_3:+88521499	None:intergenic
ATTTGTGTGTAAATAAGGTT+AGG	0.388419	3_3:+88520038	None:intergenic
TTGAAAAGTACCAAGAAGTA+TGG	0.396215	3_3:-88520252	Msa0482080:exon
GGTATGCGTAATCTATTTGT+AGG	0.399971	3_3:+88521579	None:intergenic
AGTTGTGGGTATGGTTCTGA+TGG	0.412932	3_3:-88521059	Msa0482080:CDS
TGTAGAAATTTATTGGTGTT+GGG	0.414062	3_3:+88521874	None:intergenic
GACCTAGTGATTGGACTTAT+GGG	0.418628	3_3:-88521148	Msa0482080:CDS
GTTGCACCTTTGAAGGTTGA+TGG	0.422946	3_3:-88521170	Msa0482080:CDS
ATGAGGTTGAAAATGTTTGC+AGG	0.430766	3_3:-88520599	Msa0482080:intron
AACCGTTGCCTTTGGTTCCT+AGG	0.434888	3_3:+88521507	None:intergenic
AAGAGTAGGTCACGGAAACC+TGG	0.435538	3_3:+88521653	None:intergenic
TGAAAACGTTGTCGGGTGTT+GGG	0.444054	3_3:+88521450	None:intergenic
ATGAAAACGTTGTCGGGTGT+TGG	0.445293	3_3:+88521449	None:intergenic
ACTGGTGGTAGTTGTGGGTA+TGG	0.446197	3_3:-88521068	Msa0482080:CDS
CGTGTTAGGTATTCTGTTCA+AGG	0.451485	3_3:-88521122	Msa0482080:CDS
GGTATGGTTCTGATGGGATT+AGG	0.452697	3_3:-88521052	Msa0482080:CDS
GTATCTTATGAAGCTATTAA+GGG	0.454558	3_3:-88521242	Msa0482080:CDS
TGTCATCCATGCTAGCATAT+AGG	0.458562	3_3:+88520286	None:intergenic
AAAGTATTCAATTTGTGGAT+AGG	0.461355	3_3:-88519997	Msa0482080:three_prime_UTR
AAGTATTCAATTTGTGGATA+GGG	0.467903	3_3:-88519996	Msa0482080:three_prime_UTR
TGCAGTGGCCTTATTATCAT+CGG	0.468684	3_3:-88520636	Msa0482080:intron
AGGCTACTGGTGGTAGTTGT+GGG	0.472568	3_3:-88521073	Msa0482080:CDS
CAGGCTACTGGTGGTAGTTG+TGG	0.481186	3_3:-88521074	Msa0482080:CDS
CTCATGTTCCACGTAACCTC+AGG	0.481711	3_3:-88521614	Msa0482080:CDS
GCAGTGGCCTTATTATCATC+GGG	0.491551	3_3:-88520635	Msa0482080:intron
ACTTCAAATTGTGACTCAGC+AGG	0.494437	3_3:-88520999	Msa0482080:intron
GTTGTGGGTATGGTTCTGAT+GGG	0.495945	3_3:-88521058	Msa0482080:CDS
AATGAGCATGAAAACGTTGT+CGG	0.501170	3_3:+88521442	None:intergenic
GTGTAGAAATTTATTGGTGT+TGG	0.502531	3_3:+88521873	None:intergenic
ATGAGCATGAAAACGTTGTC+GGG	0.504088	3_3:+88521443	None:intergenic
ATGCAGAAATGTTTCTGGTA+TGG	0.510318	3_3:-88521366	Msa0482080:CDS
AACCAAAGGCAACGGTTTCG+CGG	0.517363	3_3:-88521501	Msa0482080:CDS
TACCCATTTGCCCTCCAAAA+CGG	0.517444	3_3:-88521686	Msa0482080:CDS
GTAGAAATTTATTGGTGTTG+GGG	0.519960	3_3:+88521875	None:intergenic
TTGTCCTGCTTGGAATATGA+TGG	0.524635	3_3:-88521324	Msa0482080:CDS
AGTACTATGATTGTCCTGCT+TGG	0.525763	3_3:-88521334	Msa0482080:CDS
ACGTGCGAAACACTAGTCCT+AGG	0.526750	3_3:-88521524	Msa0482080:CDS
TTTGTGTGTAAATAAGGTTA+GGG	0.527549	3_3:+88520039	None:intergenic
ATAATATAATGATTAGATGA+TGG	0.530823	3_3:+88521786	None:intergenic
CGGGAGCAAGAAGGCCTATG+AGG	0.531175	3_3:-88520616	Msa0482080:CDS
GTGTTGTTAGAACAACTTGA+AGG	0.536835	3_3:+88521743	None:intergenic
CGTTGTTTATGCAGAAGAGT+AGG	0.539097	3_3:+88521639	None:intergenic
TGCAGAAATGTTTCTGGTAT+GGG	0.539299	3_3:-88521365	Msa0482080:CDS
CTAAGTAAGCTTGAGTGTGA+AGG	0.541978	3_3:-88521212	Msa0482080:CDS
TAGCATGGATGACAACCAAC+TGG	0.545560	3_3:-88520277	Msa0482080:CDS
GAACTGATTATTGTCAAAGT+AGG	0.551503	3_3:+88519968	None:intergenic
TCAGGGAAGCCTTGAAACAA+AGG	0.553085	3_3:+88521401	None:intergenic
TTTGCCCTCCAAAACGGATG+TGG	0.555787	3_3:-88521680	Msa0482080:CDS
AGGTTGATGGACCTAGTGAT+TGG	0.555804	3_3:-88521157	Msa0482080:CDS
CTAGGTCCATCAACCTTCAA+AGG	0.558381	3_3:+88521164	None:intergenic
TAAGTAAGCTTGAGTGTGAA+GGG	0.560178	3_3:-88521211	Msa0482080:CDS
TGGCCCATCATATTCCAAGC+AGG	0.569795	3_3:+88521320	None:intergenic
ACGGTTTCGCGGTCGAACCG+TGG	0.573603	3_3:-88521490	Msa0482080:CDS
TGCATGGCAAATGTTTATCA+GGG	0.573889	3_3:+88521384	None:intergenic
GGGTGTTGGGTTCATGTATG+GGG	0.583489	3_3:+88521463	None:intergenic
TATCTTATGAAGCTATTAAG+GGG	0.587092	3_3:-88521241	Msa0482080:CDS
TATAATGATTAGATGATGGA+AGG	0.588486	3_3:+88521790	None:intergenic
TAGGACTCTGTAGGAACCTG+AGG	0.590231	3_3:+88521598	None:intergenic
ATTAGGCAAGTTTGTATGTG+TGG	0.591730	3_3:-88521035	Msa0482080:CDS
GTGTTAGGTATTCTGTTCAA+GGG	0.592070	3_3:-88521121	Msa0482080:CDS
GTTCGTGAAGTGTTAGAGCT+TGG	0.605240	3_3:+88521558	None:intergenic
AACACATGTAGATCATATTG+TGG	0.606078	3_3:-88521725	Msa0482080:CDS
CAAAACGGATGTGGCCACCC+AGG	0.607644	3_3:-88521671	Msa0482080:CDS
TTCATGTATGGGGACCGCCA+CGG	0.609930	3_3:+88521473	None:intergenic
TGCAACTATCATCATAAACT+GGG	0.611597	3_3:-88520222	Msa0482080:three_prime_UTR
TGTCCTGCTTGGAATATGAT+GGG	0.617971	3_3:-88521323	Msa0482080:CDS
TATTATCATCGGGAGCAAGA+AGG	0.618389	3_3:-88520625	Msa0482080:CDS
CCTTGAAACAAAGGTGAACG+AGG	0.620322	3_3:+88521410	None:intergenic
AGAGTAGGTCACGGAAACCT+GGG	0.621258	3_3:+88521654	None:intergenic
GTCCTAGGAACCAAAGGCAA+CGG	0.628622	3_3:-88521509	Msa0482080:CDS
CTTGAACAGAATACCTAACA+CGG	0.629047	3_3:+88521123	None:intergenic
GTTTCGCACGTAGACATGTG+TGG	0.629216	3_3:+88521536	None:intergenic
TGTAGGAACCTGAGGTTACG+TGG	0.629711	3_3:+88521606	None:intergenic
GATACAGCACAACACTCAGG+TGG	0.631890	3_3:+88521260	None:intergenic
ATAAGGTTAGGGATATGGCT+AGG	0.632415	3_3:+88520050	None:intergenic
ACACTAGTCCTAGGAACCAA+AGG	0.632752	3_3:-88521515	Msa0482080:CDS
ATCTATTTGTAGGACTCTGT+AGG	0.633162	3_3:+88521589	None:intergenic
GGTGCTTGTCAGGCTACTGG+TGG	0.639415	3_3:-88521083	Msa0482080:CDS
TGTTGTTAGAACAACTTGAA+GGG	0.642633	3_3:+88521744	None:intergenic
TAAGATACAGCACAACACTC+AGG	0.645417	3_3:+88521257	None:intergenic
ATCCCATAAGTCCAATCACT+AGG	0.648619	3_3:+88521146	None:intergenic
TTATGCAGAAGAGTAGGTCA+CGG	0.652706	3_3:+88521645	None:intergenic
ATACCAGAAACATTTCTGCA+TGG	0.663576	3_3:+88521368	None:intergenic
ATACAGCACAACACTCAGGT+GGG	0.676071	3_3:+88521261	None:intergenic
GTTTCGCGGTCGAACCGTGG+CGG	0.689256	3_3:-88521487	Msa0482080:CDS
GTAGGTCACGGAAACCTGGG+TGG	0.745818	3_3:+88521657	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAATTGATATTATTTATCAT+CGG	+	chr3_3:88521116-88521135	None:intergenic	10.0%
!!	ATGATAAATAATATCAATTA+CGG	-	chr3_3:88521116-88521135	Msa0482080:CDS	10.0%
!!	TAATTGATATTATTTATCAT+CGG	+	chr3_3:88521116-88521135	None:intergenic	10.0%
!!	ATGATAAATAATATCAATTA+CGG	-	chr3_3:88521116-88521135	Msa0482080:CDS	10.0%
!!	ATAATATAATGATTAGATGA+TGG	+	chr3_3:88520089-88520108	None:intergenic	15.0%
!!!	TCAAGATTCTATTAATTTTT+TGG	-	chr3_3:88520908-88520927	Msa0482080:intron	15.0%
!!!	AAAATAACTTATTTTAGAGA+GGG	+	chr3_3:88520936-88520955	None:intergenic	15.0%
!!!	TAAAATAACTTATTTTAGAG+AGG	+	chr3_3:88520937-88520956	None:intergenic	15.0%
!!	AATTGATATTATTTATCATC+GGG	+	chr3_3:88521115-88521134	None:intergenic	15.0%
!!	ATTTCATTACTTTGTTAATT+AGG	-	chr3_3:88521345-88521364	Msa0482080:CDS	15.0%
!!!	ATTTTTCAATTTTTTTCCTA+GGG	+	chr3_3:88521771-88521790	None:intergenic	15.0%
!!!	TATTTTTCAATTTTTTTCCT+AGG	+	chr3_3:88521772-88521791	None:intergenic	15.0%
!!	ATAATATAATGATTAGATGA+TGG	+	chr3_3:88520089-88520108	None:intergenic	15.0%
!!!	TCAAGATTCTATTAATTTTT+TGG	-	chr3_3:88520908-88520927	Msa0482080:intron	15.0%
!!!	AAAATAACTTATTTTAGAGA+GGG	+	chr3_3:88520936-88520955	None:intergenic	15.0%
!!!	TAAAATAACTTATTTTAGAG+AGG	+	chr3_3:88520937-88520956	None:intergenic	15.0%
!!	AATTGATATTATTTATCATC+GGG	+	chr3_3:88521115-88521134	None:intergenic	15.0%
!!	ATTTCATTACTTTGTTAATT+AGG	-	chr3_3:88521345-88521364	Msa0482080:CDS	15.0%
!!!	ATTTTTCAATTTTTTTCCTA+GGG	+	chr3_3:88521771-88521790	None:intergenic	15.0%
!!!	TATTTTTCAATTTTTTTCCT+AGG	+	chr3_3:88521772-88521791	None:intergenic	15.0%
!!	TCAAATTGTGAAACAATATT+TGG	+	chr3_3:88521043-88521062	None:intergenic	20.0%
!!	ATTGATATTATTTATCATCG+GGG	+	chr3_3:88521114-88521133	None:intergenic	20.0%
!!	TACATAACATCTTTCAATTA+AGG	+	chr3_3:88521433-88521452	None:intergenic	20.0%
!!!	TTTCATTTGATTTGCTAAAA+TGG	+	chr3_3:88521510-88521529	None:intergenic	20.0%
!!	TTAGCAAATCAAATGAAAAT+TGG	-	chr3_3:88521512-88521531	Msa0482080:CDS	20.0%
!!	TAGCAAATCAAATGAAAATT+GGG	-	chr3_3:88521513-88521532	Msa0482080:CDS	20.0%
!!!	TCATATGTAACTTTTCTTTT+TGG	-	chr3_3:88521550-88521569	Msa0482080:CDS	20.0%
!!!	CATATGTAACTTTTCTTTTT+GGG	-	chr3_3:88521551-88521570	Msa0482080:CDS	20.0%
!!	TCAAATTGTGAAACAATATT+TGG	+	chr3_3:88521043-88521062	None:intergenic	20.0%
!!	ATTGATATTATTTATCATCG+GGG	+	chr3_3:88521114-88521133	None:intergenic	20.0%
!!	TACATAACATCTTTCAATTA+AGG	+	chr3_3:88521433-88521452	None:intergenic	20.0%
!!!	TTTCATTTGATTTGCTAAAA+TGG	+	chr3_3:88521510-88521529	None:intergenic	20.0%
!!	TTAGCAAATCAAATGAAAAT+TGG	-	chr3_3:88521512-88521531	Msa0482080:CDS	20.0%
!!	TAGCAAATCAAATGAAAATT+GGG	-	chr3_3:88521513-88521532	Msa0482080:CDS	20.0%
!!!	TCATATGTAACTTTTCTTTT+TGG	-	chr3_3:88521550-88521569	Msa0482080:CDS	20.0%
!!!	CATATGTAACTTTTCTTTTT+GGG	-	chr3_3:88521551-88521570	Msa0482080:CDS	20.0%
!!	TGTAGAAATTTATTGGTGTT+GGG	+	chr3_3:88520001-88520020	None:intergenic	25.0%
!	TGATGAGTGTAGAAATTTAT+TGG	+	chr3_3:88520008-88520027	None:intergenic	25.0%
!!	TGATGATATTTTGCTTGATT+TGG	+	chr3_3:88520036-88520055	None:intergenic	25.0%
!!!	TATAATGATTAGATGATGGA+AGG	+	chr3_3:88520085-88520104	None:intergenic	25.0%
!	TGTATCTTATGAAGCTATTA+AGG	-	chr3_3:88520629-88520648	Msa0482080:CDS	25.0%
!	GTATCTTATGAAGCTATTAA+GGG	-	chr3_3:88520630-88520649	Msa0482080:CDS	25.0%
!	TATCTTATGAAGCTATTAAG+GGG	-	chr3_3:88520631-88520650	Msa0482080:CDS	25.0%
!	ATTGTGAAACAATATTTGGT+CGG	+	chr3_3:88521039-88521058	None:intergenic	25.0%
!	ATTGTTTCACAATTTGAACT+AGG	-	chr3_3:88521046-88521065	Msa0482080:CDS	25.0%
!	TTGTTTCACAATTTGAACTA+GGG	-	chr3_3:88521047-88521066	Msa0482080:CDS	25.0%
!	AAAAATGATCACTATAGCAT+AGG	+	chr3_3:88521206-88521225	None:intergenic	25.0%
!!	TATGCTGTATATTTTCAAAG+TGG	-	chr3_3:88521374-88521393	Msa0482080:CDS	25.0%
!	ACATCTTTCAATTAAGGAAT+AGG	+	chr3_3:88521427-88521446	None:intergenic	25.0%
!	AGCAAATCAAATGAAAATTG+GGG	-	chr3_3:88521514-88521533	Msa0482080:CDS	25.0%
!!	TTTTGTACATGCCTTTTTTT+TGG	-	chr3_3:88521685-88521704	Msa0482080:CDS	25.0%
!	TTTGTGTGTAAATAAGGTTA+GGG	+	chr3_3:88521836-88521855	None:intergenic	25.0%
!	ATTTGTGTGTAAATAAGGTT+AGG	+	chr3_3:88521837-88521856	None:intergenic	25.0%
!	TGATCATTTGTGTGTAAATA+AGG	+	chr3_3:88521842-88521861	None:intergenic	25.0%
!!	AGAACAAAGTATTCAATTTG+TGG	-	chr3_3:88521870-88521889	Msa0482080:five_prime_UTR	25.0%
!!	AAAGTATTCAATTTGTGGAT+AGG	-	chr3_3:88521875-88521894	Msa0482080:five_prime_UTR	25.0%
!	AAGTATTCAATTTGTGGATA+GGG	-	chr3_3:88521876-88521895	Msa0482080:five_prime_UTR	25.0%
!!	TGTAGAAATTTATTGGTGTT+GGG	+	chr3_3:88520001-88520020	None:intergenic	25.0%
!	TGATGAGTGTAGAAATTTAT+TGG	+	chr3_3:88520008-88520027	None:intergenic	25.0%
!!	TGATGATATTTTGCTTGATT+TGG	+	chr3_3:88520036-88520055	None:intergenic	25.0%
!!!	TATAATGATTAGATGATGGA+AGG	+	chr3_3:88520085-88520104	None:intergenic	25.0%
!	TGTATCTTATGAAGCTATTA+AGG	-	chr3_3:88520629-88520648	Msa0482080:CDS	25.0%
!	GTATCTTATGAAGCTATTAA+GGG	-	chr3_3:88520630-88520649	Msa0482080:CDS	25.0%
!	TATCTTATGAAGCTATTAAG+GGG	-	chr3_3:88520631-88520650	Msa0482080:CDS	25.0%
!	ATTGTGAAACAATATTTGGT+CGG	+	chr3_3:88521039-88521058	None:intergenic	25.0%
!	ATTGTTTCACAATTTGAACT+AGG	-	chr3_3:88521046-88521065	Msa0482080:CDS	25.0%
!	TTGTTTCACAATTTGAACTA+GGG	-	chr3_3:88521047-88521066	Msa0482080:CDS	25.0%
!	AAAAATGATCACTATAGCAT+AGG	+	chr3_3:88521206-88521225	None:intergenic	25.0%
!!	TATGCTGTATATTTTCAAAG+TGG	-	chr3_3:88521374-88521393	Msa0482080:CDS	25.0%
!	ACATCTTTCAATTAAGGAAT+AGG	+	chr3_3:88521427-88521446	None:intergenic	25.0%
!	AGCAAATCAAATGAAAATTG+GGG	-	chr3_3:88521514-88521533	Msa0482080:CDS	25.0%
!!	TTTTGTACATGCCTTTTTTT+TGG	-	chr3_3:88521685-88521704	Msa0482080:CDS	25.0%
!	TTTGTGTGTAAATAAGGTTA+GGG	+	chr3_3:88521836-88521855	None:intergenic	25.0%
!	ATTTGTGTGTAAATAAGGTT+AGG	+	chr3_3:88521837-88521856	None:intergenic	25.0%
!	TGATCATTTGTGTGTAAATA+AGG	+	chr3_3:88521842-88521861	None:intergenic	25.0%
!!	AGAACAAAGTATTCAATTTG+TGG	-	chr3_3:88521870-88521889	Msa0482080:five_prime_UTR	25.0%
!!	AAAGTATTCAATTTGTGGAT+AGG	-	chr3_3:88521875-88521894	Msa0482080:five_prime_UTR	25.0%
!	AAGTATTCAATTTGTGGATA+GGG	-	chr3_3:88521876-88521895	Msa0482080:five_prime_UTR	25.0%
!!	GTAGAAATTTATTGGTGTTG+GGG	+	chr3_3:88520000-88520019	None:intergenic	30.0%
	GTGTAGAAATTTATTGGTGT+TGG	+	chr3_3:88520002-88520021	None:intergenic	30.0%
	TGTTGTTAGAACAACTTGAA+GGG	+	chr3_3:88520131-88520150	None:intergenic	30.0%
	AACACATGTAGATCATATTG+TGG	-	chr3_3:88520147-88520166	Msa0482080:three_prime_UTR	30.0%
!	TTTTTCTGCATATTTTGCAG+TGG	-	chr3_3:88521221-88521240	Msa0482080:CDS	30.0%
!	GTATATTTTCAAAGTGGCAT+TGG	-	chr3_3:88521380-88521399	Msa0482080:CDS	30.0%
!!	TTGAAAAGTACCAAGAAGTA+TGG	-	chr3_3:88521620-88521639	Msa0482080:CDS	30.0%
	ATGCAACTATCATCATAAAC+TGG	-	chr3_3:88521649-88521668	Msa0482080:CDS	30.0%
	TGCAACTATCATCATAAACT+GGG	-	chr3_3:88521650-88521669	Msa0482080:CDS	30.0%
	ATGTTCTTCAGCCAAAAAAA+AGG	+	chr3_3:88521699-88521718	None:intergenic	30.0%
	TGTAAATAAGGTTAGGGATA+TGG	+	chr3_3:88521830-88521849	None:intergenic	30.0%
	GAACTGATTATTGTCAAAGT+AGG	+	chr3_3:88521907-88521926	None:intergenic	30.0%
!!	GTAGAAATTTATTGGTGTTG+GGG	+	chr3_3:88520000-88520019	None:intergenic	30.0%
	GTGTAGAAATTTATTGGTGT+TGG	+	chr3_3:88520002-88520021	None:intergenic	30.0%
	TGTTGTTAGAACAACTTGAA+GGG	+	chr3_3:88520131-88520150	None:intergenic	30.0%
	AACACATGTAGATCATATTG+TGG	-	chr3_3:88520147-88520166	Msa0482080:three_prime_UTR	30.0%
!	TTTTTCTGCATATTTTGCAG+TGG	-	chr3_3:88521221-88521240	Msa0482080:CDS	30.0%
!	GTATATTTTCAAAGTGGCAT+TGG	-	chr3_3:88521380-88521399	Msa0482080:CDS	30.0%
!!	TTGAAAAGTACCAAGAAGTA+TGG	-	chr3_3:88521620-88521639	Msa0482080:CDS	30.0%
	ATGCAACTATCATCATAAAC+TGG	-	chr3_3:88521649-88521668	Msa0482080:CDS	30.0%
	TGCAACTATCATCATAAACT+GGG	-	chr3_3:88521650-88521669	Msa0482080:CDS	30.0%
	ATGTTCTTCAGCCAAAAAAA+AGG	+	chr3_3:88521699-88521718	None:intergenic	30.0%
	TGTAAATAAGGTTAGGGATA+TGG	+	chr3_3:88521830-88521849	None:intergenic	30.0%
	GAACTGATTATTGTCAAAGT+AGG	+	chr3_3:88521907-88521926	None:intergenic	30.0%
!!!	GTTGGGGATGATTTTTTAGT+TGG	+	chr3_3:88519984-88520003	None:intergenic	35.0%
	ATGGAAGGTAGTGAAGAATT+TGG	+	chr3_3:88520070-88520089	None:intergenic	35.0%
!	GTGTTGTTAGAACAACTTGA+AGG	+	chr3_3:88520132-88520151	None:intergenic	35.0%
	ATCTATTTGTAGGACTCTGT+AGG	+	chr3_3:88520286-88520305	None:intergenic	35.0%
	GGTATGCGTAATCTATTTGT+AGG	+	chr3_3:88520296-88520315	None:intergenic	35.0%
	AATGAGCATGAAAACGTTGT+CGG	+	chr3_3:88520433-88520452	None:intergenic	35.0%
	TGCATGGCAAATGTTTATCA+GGG	+	chr3_3:88520491-88520510	None:intergenic	35.0%
	ATACCAGAAACATTTCTGCA+TGG	+	chr3_3:88520507-88520526	None:intergenic	35.0%
!!	ATGCAGAAATGTTTCTGGTA+TGG	-	chr3_3:88520506-88520525	Msa0482080:intron	35.0%
!!	TGCAGAAATGTTTCTGGTAT+GGG	-	chr3_3:88520507-88520526	Msa0482080:intron	35.0%
!!	TATGATGGGCCATAAAAAGA+CGG	-	chr3_3:88520563-88520582	Msa0482080:intron	35.0%
	TAAGTAAGCTTGAGTGTGAA+GGG	-	chr3_3:88520661-88520680	Msa0482080:intron	35.0%
	TTATAGTGTTGCACCTTTGA+AGG	-	chr3_3:88520695-88520714	Msa0482080:intron	35.0%
	CTTGAACAGAATACCTAACA+CGG	+	chr3_3:88520752-88520771	None:intergenic	35.0%
	GTGTTAGGTATTCTGTTCAA+GGG	-	chr3_3:88520751-88520770	Msa0482080:intron	35.0%
	ATTAGGCAAGTTTGTATGTG+TGG	-	chr3_3:88520837-88520856	Msa0482080:intron	35.0%
	TCTCTCGAAAAAATCGTCTT+TGG	-	chr3_3:88521071-88521090	Msa0482080:CDS	35.0%
!	GCAAACATTTTCAACCTCAT+AGG	+	chr3_3:88521273-88521292	None:intergenic	35.0%
	ATGAGGTTGAAAATGTTTGC+AGG	-	chr3_3:88521273-88521292	Msa0482080:CDS	35.0%
!!	TGTAACTTTTCTTTTTGGGC+AGG	-	chr3_3:88521555-88521574	Msa0482080:CDS	35.0%
!	TGGTACTTTTCAAATCCAGT+TGG	+	chr3_3:88521613-88521632	None:intergenic	35.0%
!!!	TGTTTTGATCTGTATTCCCT+AGG	-	chr3_3:88521752-88521771	Msa0482080:CDS	35.0%
!!!	GTTGGGGATGATTTTTTAGT+TGG	+	chr3_3:88519984-88520003	None:intergenic	35.0%
	ATGGAAGGTAGTGAAGAATT+TGG	+	chr3_3:88520070-88520089	None:intergenic	35.0%
!	GTGTTGTTAGAACAACTTGA+AGG	+	chr3_3:88520132-88520151	None:intergenic	35.0%
	ATCTATTTGTAGGACTCTGT+AGG	+	chr3_3:88520286-88520305	None:intergenic	35.0%
	GGTATGCGTAATCTATTTGT+AGG	+	chr3_3:88520296-88520315	None:intergenic	35.0%
	AATGAGCATGAAAACGTTGT+CGG	+	chr3_3:88520433-88520452	None:intergenic	35.0%
	TGCATGGCAAATGTTTATCA+GGG	+	chr3_3:88520491-88520510	None:intergenic	35.0%
	ATACCAGAAACATTTCTGCA+TGG	+	chr3_3:88520507-88520526	None:intergenic	35.0%
!!	ATGCAGAAATGTTTCTGGTA+TGG	-	chr3_3:88520506-88520525	Msa0482080:intron	35.0%
!!	TGCAGAAATGTTTCTGGTAT+GGG	-	chr3_3:88520507-88520526	Msa0482080:intron	35.0%
!!	TATGATGGGCCATAAAAAGA+CGG	-	chr3_3:88520563-88520582	Msa0482080:intron	35.0%
	TAAGTAAGCTTGAGTGTGAA+GGG	-	chr3_3:88520661-88520680	Msa0482080:intron	35.0%
	TTATAGTGTTGCACCTTTGA+AGG	-	chr3_3:88520695-88520714	Msa0482080:intron	35.0%
	CTTGAACAGAATACCTAACA+CGG	+	chr3_3:88520752-88520771	None:intergenic	35.0%
	GTGTTAGGTATTCTGTTCAA+GGG	-	chr3_3:88520751-88520770	Msa0482080:intron	35.0%
	ATTAGGCAAGTTTGTATGTG+TGG	-	chr3_3:88520837-88520856	Msa0482080:intron	35.0%
	TCTCTCGAAAAAATCGTCTT+TGG	-	chr3_3:88521071-88521090	Msa0482080:CDS	35.0%
!	GCAAACATTTTCAACCTCAT+AGG	+	chr3_3:88521273-88521292	None:intergenic	35.0%
	ATGAGGTTGAAAATGTTTGC+AGG	-	chr3_3:88521273-88521292	Msa0482080:CDS	35.0%
!!	TGTAACTTTTCTTTTTGGGC+AGG	-	chr3_3:88521555-88521574	Msa0482080:CDS	35.0%
!	TGGTACTTTTCAAATCCAGT+TGG	+	chr3_3:88521613-88521632	None:intergenic	35.0%
!!!	TGTTTTGATCTGTATTCCCT+AGG	-	chr3_3:88521752-88521771	Msa0482080:CDS	35.0%
	TTATGCAGAAGAGTAGGTCA+CGG	+	chr3_3:88520230-88520249	None:intergenic	40.0%
	CGTTGTTTATGCAGAAGAGT+AGG	+	chr3_3:88520236-88520255	None:intergenic	40.0%
	ATGAGCATGAAAACGTTGTC+GGG	+	chr3_3:88520432-88520451	None:intergenic	40.0%
	CTGCATGGCAAATGTTTATC+AGG	+	chr3_3:88520492-88520511	None:intergenic	40.0%
	TTGCCATGCAGAAATGTTTC+TGG	-	chr3_3:88520501-88520520	Msa0482080:intron	40.0%
	AGTACTATGATTGTCCTGCT+TGG	-	chr3_3:88520538-88520557	Msa0482080:intron	40.0%
	TTGTCCTGCTTGGAATATGA+TGG	-	chr3_3:88520548-88520567	Msa0482080:intron	40.0%
	TGTCCTGCTTGGAATATGAT+GGG	-	chr3_3:88520549-88520568	Msa0482080:intron	40.0%
!!	ATGATGGGCCATAAAAAGAC+GGG	-	chr3_3:88520564-88520583	Msa0482080:intron	40.0%
!	AAGAAGAGCCCGTCTTTTTA+TGG	+	chr3_3:88520575-88520594	None:intergenic	40.0%
!!!	TCTTCTTCGTTTTTTGGGTC+TGG	-	chr3_3:88520588-88520607	Msa0482080:intron	40.0%
	TAAGATACAGCACAACACTC+AGG	+	chr3_3:88520618-88520637	None:intergenic	40.0%
	CTAAGTAAGCTTGAGTGTGA+AGG	-	chr3_3:88520660-88520679	Msa0482080:intron	40.0%
	GACCTAGTGATTGGACTTAT+GGG	-	chr3_3:88520724-88520743	Msa0482080:intron	40.0%
	ATCCCATAAGTCCAATCACT+AGG	+	chr3_3:88520729-88520748	None:intergenic	40.0%
	CGTGTTAGGTATTCTGTTCA+AGG	-	chr3_3:88520750-88520769	Msa0482080:intron	40.0%
	ACTTCAAATTGTGACTCAGC+AGG	-	chr3_3:88520873-88520892	Msa0482080:intron	40.0%
	GTCAGTGTGTCTTAATAACC+AGG	-	chr3_3:88520973-88520992	Msa0482080:intron	40.0%
!!	TGCAGTGGCCTTATTATCAT+CGG	-	chr3_3:88521236-88521255	Msa0482080:CDS	40.0%
	TCTTGCTCCCGATGATAATA+AGG	+	chr3_3:88521247-88521266	None:intergenic	40.0%
	TATTATCATCGGGAGCAAGA+AGG	-	chr3_3:88521247-88521266	Msa0482080:CDS	40.0%
!!	TTCTTTTTGGGCAGGACTTT+TGG	-	chr3_3:88521563-88521582	Msa0482080:CDS	40.0%
!	TTTTGGCCTATATGCTAGCA+TGG	-	chr3_3:88521580-88521599	Msa0482080:CDS	40.0%
	TGTCATCCATGCTAGCATAT+AGG	+	chr3_3:88521589-88521608	None:intergenic	40.0%
	GCATACTATGCCATACTTCT+TGG	+	chr3_3:88521633-88521652	None:intergenic	40.0%
	ATAAGGTTAGGGATATGGCT+AGG	+	chr3_3:88521825-88521844	None:intergenic	40.0%
	TTATGCAGAAGAGTAGGTCA+CGG	+	chr3_3:88520230-88520249	None:intergenic	40.0%
	CGTTGTTTATGCAGAAGAGT+AGG	+	chr3_3:88520236-88520255	None:intergenic	40.0%
	ATGAGCATGAAAACGTTGTC+GGG	+	chr3_3:88520432-88520451	None:intergenic	40.0%
	CTGCATGGCAAATGTTTATC+AGG	+	chr3_3:88520492-88520511	None:intergenic	40.0%
	TTGCCATGCAGAAATGTTTC+TGG	-	chr3_3:88520501-88520520	Msa0482080:intron	40.0%
	AGTACTATGATTGTCCTGCT+TGG	-	chr3_3:88520538-88520557	Msa0482080:intron	40.0%
	TTGTCCTGCTTGGAATATGA+TGG	-	chr3_3:88520548-88520567	Msa0482080:intron	40.0%
	TGTCCTGCTTGGAATATGAT+GGG	-	chr3_3:88520549-88520568	Msa0482080:intron	40.0%
!!	ATGATGGGCCATAAAAAGAC+GGG	-	chr3_3:88520564-88520583	Msa0482080:intron	40.0%
!	AAGAAGAGCCCGTCTTTTTA+TGG	+	chr3_3:88520575-88520594	None:intergenic	40.0%
!!!	TCTTCTTCGTTTTTTGGGTC+TGG	-	chr3_3:88520588-88520607	Msa0482080:intron	40.0%
	TAAGATACAGCACAACACTC+AGG	+	chr3_3:88520618-88520637	None:intergenic	40.0%
	CTAAGTAAGCTTGAGTGTGA+AGG	-	chr3_3:88520660-88520679	Msa0482080:intron	40.0%
	GACCTAGTGATTGGACTTAT+GGG	-	chr3_3:88520724-88520743	Msa0482080:intron	40.0%
	ATCCCATAAGTCCAATCACT+AGG	+	chr3_3:88520729-88520748	None:intergenic	40.0%
	CGTGTTAGGTATTCTGTTCA+AGG	-	chr3_3:88520750-88520769	Msa0482080:intron	40.0%
	ACTTCAAATTGTGACTCAGC+AGG	-	chr3_3:88520873-88520892	Msa0482080:intron	40.0%
	GTCAGTGTGTCTTAATAACC+AGG	-	chr3_3:88520973-88520992	Msa0482080:intron	40.0%
!!	TGCAGTGGCCTTATTATCAT+CGG	-	chr3_3:88521236-88521255	Msa0482080:CDS	40.0%
	TCTTGCTCCCGATGATAATA+AGG	+	chr3_3:88521247-88521266	None:intergenic	40.0%
	TATTATCATCGGGAGCAAGA+AGG	-	chr3_3:88521247-88521266	Msa0482080:CDS	40.0%
!!	TTCTTTTTGGGCAGGACTTT+TGG	-	chr3_3:88521563-88521582	Msa0482080:CDS	40.0%
!	TTTTGGCCTATATGCTAGCA+TGG	-	chr3_3:88521580-88521599	Msa0482080:CDS	40.0%
	TGTCATCCATGCTAGCATAT+AGG	+	chr3_3:88521589-88521608	None:intergenic	40.0%
	GCATACTATGCCATACTTCT+TGG	+	chr3_3:88521633-88521652	None:intergenic	40.0%
	ATAAGGTTAGGGATATGGCT+AGG	+	chr3_3:88521825-88521844	None:intergenic	40.0%
	TACCCATTTGCCCTCCAAAA+CGG	-	chr3_3:88520186-88520205	Msa0482080:three_prime_UTR	45.0%
!!!	ATCCGTTTTGGAGGGCAAAT+GGG	+	chr3_3:88520191-88520210	None:intergenic	45.0%
!	GTTCGTGAAGTGTTAGAGCT+TGG	+	chr3_3:88520317-88520336	None:intergenic	45.0%
	ACACTAGTCCTAGGAACCAA+AGG	-	chr3_3:88520357-88520376	Msa0482080:intron	45.0%
	TGAAAACGTTGTCGGGTGTT+GGG	+	chr3_3:88520425-88520444	None:intergenic	45.0%
	ATGAAAACGTTGTCGGGTGT+TGG	+	chr3_3:88520426-88520445	None:intergenic	45.0%
	CCTTGAAACAAAGGTGAACG+AGG	+	chr3_3:88520465-88520484	None:intergenic	45.0%
!	CCTCGTTCACCTTTGTTTCA+AGG	-	chr3_3:88520462-88520481	Msa0482080:intron	45.0%
	TCAGGGAAGCCTTGAAACAA+AGG	+	chr3_3:88520474-88520493	None:intergenic	45.0%
!!!	ACGGGCTCTTCTTCGTTTTT+TGG	-	chr3_3:88520582-88520601	Msa0482080:intron	45.0%
!!!	CGGGCTCTTCTTCGTTTTTT+GGG	-	chr3_3:88520583-88520602	Msa0482080:intron	45.0%
	ATACAGCACAACACTCAGGT+GGG	+	chr3_3:88520614-88520633	None:intergenic	45.0%
!	GTTGCACCTTTGAAGGTTGA+TGG	-	chr3_3:88520702-88520721	Msa0482080:intron	45.0%
	CTAGGTCCATCAACCTTCAA+AGG	+	chr3_3:88520711-88520730	None:intergenic	45.0%
!!	AGGTTGATGGACCTAGTGAT+TGG	-	chr3_3:88520715-88520734	Msa0482080:intron	45.0%
	GGACCTAGTGATTGGACTTA+TGG	-	chr3_3:88520723-88520742	Msa0482080:intron	45.0%
!	CAAGGGAGTGATGAGTTTTG+TGG	-	chr3_3:88520768-88520787	Msa0482080:intron	45.0%
!!	TGAGTTTTGTGGTGCTTGTC+AGG	-	chr3_3:88520779-88520798	Msa0482080:intron	45.0%
!!	AGTTGTGGGTATGGTTCTGA+TGG	-	chr3_3:88520813-88520832	Msa0482080:intron	45.0%
!!	GTTGTGGGTATGGTTCTGAT+GGG	-	chr3_3:88520814-88520833	Msa0482080:intron	45.0%
!!	GGTATGGTTCTGATGGGATT+AGG	-	chr3_3:88520820-88520839	Msa0482080:intron	45.0%
	ATAACCAGGAGAATGAGCTC+TGG	-	chr3_3:88520987-88521006	Msa0482080:intron	45.0%
	ATTACCAGAGCTCATTCTCC+TGG	+	chr3_3:88520994-88521013	None:intergenic	45.0%
!!	GCAGTGGCCTTATTATCATC+GGG	-	chr3_3:88521237-88521256	Msa0482080:CDS	45.0%
	AATAGGACACACAAGCCACT+AGG	+	chr3_3:88521410-88521429	None:intergenic	45.0%
	TAGCATGGATGACAACCAAC+TGG	-	chr3_3:88521595-88521614	Msa0482080:CDS	45.0%
	TACCCATTTGCCCTCCAAAA+CGG	-	chr3_3:88520186-88520205	Msa0482080:three_prime_UTR	45.0%
!!!	ATCCGTTTTGGAGGGCAAAT+GGG	+	chr3_3:88520191-88520210	None:intergenic	45.0%
!	GTTCGTGAAGTGTTAGAGCT+TGG	+	chr3_3:88520317-88520336	None:intergenic	45.0%
	ACACTAGTCCTAGGAACCAA+AGG	-	chr3_3:88520357-88520376	Msa0482080:intron	45.0%
	TGAAAACGTTGTCGGGTGTT+GGG	+	chr3_3:88520425-88520444	None:intergenic	45.0%
	ATGAAAACGTTGTCGGGTGT+TGG	+	chr3_3:88520426-88520445	None:intergenic	45.0%
	CCTTGAAACAAAGGTGAACG+AGG	+	chr3_3:88520465-88520484	None:intergenic	45.0%
!	CCTCGTTCACCTTTGTTTCA+AGG	-	chr3_3:88520462-88520481	Msa0482080:intron	45.0%
	TCAGGGAAGCCTTGAAACAA+AGG	+	chr3_3:88520474-88520493	None:intergenic	45.0%
!!!	ACGGGCTCTTCTTCGTTTTT+TGG	-	chr3_3:88520582-88520601	Msa0482080:intron	45.0%
!!!	CGGGCTCTTCTTCGTTTTTT+GGG	-	chr3_3:88520583-88520602	Msa0482080:intron	45.0%
	ATACAGCACAACACTCAGGT+GGG	+	chr3_3:88520614-88520633	None:intergenic	45.0%
!	GTTGCACCTTTGAAGGTTGA+TGG	-	chr3_3:88520702-88520721	Msa0482080:intron	45.0%
	CTAGGTCCATCAACCTTCAA+AGG	+	chr3_3:88520711-88520730	None:intergenic	45.0%
!!	AGGTTGATGGACCTAGTGAT+TGG	-	chr3_3:88520715-88520734	Msa0482080:intron	45.0%
	GGACCTAGTGATTGGACTTA+TGG	-	chr3_3:88520723-88520742	Msa0482080:intron	45.0%
!	CAAGGGAGTGATGAGTTTTG+TGG	-	chr3_3:88520768-88520787	Msa0482080:intron	45.0%
!!	TGAGTTTTGTGGTGCTTGTC+AGG	-	chr3_3:88520779-88520798	Msa0482080:intron	45.0%
!!	AGTTGTGGGTATGGTTCTGA+TGG	-	chr3_3:88520813-88520832	Msa0482080:intron	45.0%
!!	GTTGTGGGTATGGTTCTGAT+GGG	-	chr3_3:88520814-88520833	Msa0482080:intron	45.0%
!!	GGTATGGTTCTGATGGGATT+AGG	-	chr3_3:88520820-88520839	Msa0482080:intron	45.0%
	ATAACCAGGAGAATGAGCTC+TGG	-	chr3_3:88520987-88521006	Msa0482080:intron	45.0%
	ATTACCAGAGCTCATTCTCC+TGG	+	chr3_3:88520994-88521013	None:intergenic	45.0%
!!	GCAGTGGCCTTATTATCATC+GGG	-	chr3_3:88521237-88521256	Msa0482080:CDS	45.0%
	AATAGGACACACAAGCCACT+AGG	+	chr3_3:88521410-88521429	None:intergenic	45.0%
	TAGCATGGATGACAACCAAC+TGG	-	chr3_3:88521595-88521614	Msa0482080:CDS	45.0%
!!!	CATCCGTTTTGGAGGGCAAA+TGG	+	chr3_3:88520192-88520211	None:intergenic	50.0%
	TTTGCCCTCCAAAACGGATG+TGG	-	chr3_3:88520192-88520211	Msa0482080:three_prime_UTR	50.0%
	AGAGTAGGTCACGGAAACCT+GGG	+	chr3_3:88520221-88520240	None:intergenic	50.0%
	AAGAGTAGGTCACGGAAACC+TGG	+	chr3_3:88520222-88520241	None:intergenic	50.0%
	CTCATGTTCCACGTAACCTC+AGG	-	chr3_3:88520258-88520277	Msa0482080:exon	50.0%
	TGTAGGAACCTGAGGTTACG+TGG	+	chr3_3:88520269-88520288	None:intergenic	50.0%
	TAGGACTCTGTAGGAACCTG+AGG	+	chr3_3:88520277-88520296	None:intergenic	50.0%
	GTTTCGCACGTAGACATGTG+TGG	+	chr3_3:88520339-88520358	None:intergenic	50.0%
	ACGTGCGAAACACTAGTCCT+AGG	-	chr3_3:88520348-88520367	Msa0482080:intron	50.0%
	GTCCTAGGAACCAAAGGCAA+CGG	-	chr3_3:88520363-88520382	Msa0482080:intron	50.0%
!	AACCGTTGCCTTTGGTTCCT+AGG	+	chr3_3:88520368-88520387	None:intergenic	50.0%
	AACCAAAGGCAACGGTTTCG+CGG	-	chr3_3:88520371-88520390	Msa0482080:intron	50.0%
!!	GGGTGTTGGGTTCATGTATG+GGG	+	chr3_3:88520412-88520431	None:intergenic	50.0%
!!	CGGGTGTTGGGTTCATGTAT+GGG	+	chr3_3:88520413-88520432	None:intergenic	50.0%
!!	TCGGGTGTTGGGTTCATGTA+TGG	+	chr3_3:88520414-88520433	None:intergenic	50.0%
	TGGCCCATCATATTCCAAGC+AGG	+	chr3_3:88520555-88520574	None:intergenic	50.0%
	GATACAGCACAACACTCAGG+TGG	+	chr3_3:88520615-88520634	None:intergenic	50.0%
	GGACTTATGGGATCCGTGTT+AGG	-	chr3_3:88520736-88520755	Msa0482080:intron	50.0%
	AGGCTACTGGTGGTAGTTGT+GGG	-	chr3_3:88520799-88520818	Msa0482080:intron	50.0%
	ACTGGTGGTAGTTGTGGGTA+TGG	-	chr3_3:88520804-88520823	Msa0482080:intron	50.0%
!!	AGTGGCATTGGTGATCCTAG+TGG	-	chr3_3:88521392-88521411	Msa0482080:CDS	50.0%
!!!	CATCCGTTTTGGAGGGCAAA+TGG	+	chr3_3:88520192-88520211	None:intergenic	50.0%
	TTTGCCCTCCAAAACGGATG+TGG	-	chr3_3:88520192-88520211	Msa0482080:three_prime_UTR	50.0%
	AGAGTAGGTCACGGAAACCT+GGG	+	chr3_3:88520221-88520240	None:intergenic	50.0%
	AAGAGTAGGTCACGGAAACC+TGG	+	chr3_3:88520222-88520241	None:intergenic	50.0%
	CTCATGTTCCACGTAACCTC+AGG	-	chr3_3:88520258-88520277	Msa0482080:exon	50.0%
	TGTAGGAACCTGAGGTTACG+TGG	+	chr3_3:88520269-88520288	None:intergenic	50.0%
	TAGGACTCTGTAGGAACCTG+AGG	+	chr3_3:88520277-88520296	None:intergenic	50.0%
	GTTTCGCACGTAGACATGTG+TGG	+	chr3_3:88520339-88520358	None:intergenic	50.0%
	ACGTGCGAAACACTAGTCCT+AGG	-	chr3_3:88520348-88520367	Msa0482080:intron	50.0%
	GTCCTAGGAACCAAAGGCAA+CGG	-	chr3_3:88520363-88520382	Msa0482080:intron	50.0%
!	AACCGTTGCCTTTGGTTCCT+AGG	+	chr3_3:88520368-88520387	None:intergenic	50.0%
	AACCAAAGGCAACGGTTTCG+CGG	-	chr3_3:88520371-88520390	Msa0482080:intron	50.0%
!!	GGGTGTTGGGTTCATGTATG+GGG	+	chr3_3:88520412-88520431	None:intergenic	50.0%
!!	CGGGTGTTGGGTTCATGTAT+GGG	+	chr3_3:88520413-88520432	None:intergenic	50.0%
!!	TCGGGTGTTGGGTTCATGTA+TGG	+	chr3_3:88520414-88520433	None:intergenic	50.0%
	TGGCCCATCATATTCCAAGC+AGG	+	chr3_3:88520555-88520574	None:intergenic	50.0%
	GATACAGCACAACACTCAGG+TGG	+	chr3_3:88520615-88520634	None:intergenic	50.0%
	GGACTTATGGGATCCGTGTT+AGG	-	chr3_3:88520736-88520755	Msa0482080:intron	50.0%
	AGGCTACTGGTGGTAGTTGT+GGG	-	chr3_3:88520799-88520818	Msa0482080:intron	50.0%
	ACTGGTGGTAGTTGTGGGTA+TGG	-	chr3_3:88520804-88520823	Msa0482080:intron	50.0%
!!	AGTGGCATTGGTGATCCTAG+TGG	-	chr3_3:88521392-88521411	Msa0482080:CDS	50.0%
!!	GTGGCCACATCCGTTTTGGA+GGG	+	chr3_3:88520199-88520218	None:intergenic	55.0%
	TTCATGTATGGGGACCGCCA+CGG	+	chr3_3:88520402-88520421	None:intergenic	55.0%
	TGTGGTGCTTGTCAGGCTAC+TGG	-	chr3_3:88520786-88520805	Msa0482080:intron	55.0%
	CAGGCTACTGGTGGTAGTTG+TGG	-	chr3_3:88520798-88520817	Msa0482080:intron	55.0%
!!	GTGGCCACATCCGTTTTGGA+GGG	+	chr3_3:88520199-88520218	None:intergenic	55.0%
	TTCATGTATGGGGACCGCCA+CGG	+	chr3_3:88520402-88520421	None:intergenic	55.0%
	TGTGGTGCTTGTCAGGCTAC+TGG	-	chr3_3:88520786-88520805	Msa0482080:intron	55.0%
	CAGGCTACTGGTGGTAGTTG+TGG	-	chr3_3:88520798-88520817	Msa0482080:intron	55.0%
!	GGTGGCCACATCCGTTTTGG+AGG	+	chr3_3:88520200-88520219	None:intergenic	60.0%
!	CTGGGTGGCCACATCCGTTT+TGG	+	chr3_3:88520203-88520222	None:intergenic	60.0%
	CAAAACGGATGTGGCCACCC+AGG	-	chr3_3:88520201-88520220	Msa0482080:three_prime_UTR	60.0%
	GTAGGTCACGGAAACCTGGG+TGG	+	chr3_3:88520218-88520237	None:intergenic	60.0%
	GACCGCGAAACCGTTGCCTT+TGG	+	chr3_3:88520376-88520395	None:intergenic	60.0%
	GGTGCTTGTCAGGCTACTGG+TGG	-	chr3_3:88520789-88520808	Msa0482080:intron	60.0%
	CGGGAGCAAGAAGGCCTATG+AGG	-	chr3_3:88521256-88521275	Msa0482080:CDS	60.0%
!	GGTGGCCACATCCGTTTTGG+AGG	+	chr3_3:88520200-88520219	None:intergenic	60.0%
!	CTGGGTGGCCACATCCGTTT+TGG	+	chr3_3:88520203-88520222	None:intergenic	60.0%
	CAAAACGGATGTGGCCACCC+AGG	-	chr3_3:88520201-88520220	Msa0482080:three_prime_UTR	60.0%
	GTAGGTCACGGAAACCTGGG+TGG	+	chr3_3:88520218-88520237	None:intergenic	60.0%
	GACCGCGAAACCGTTGCCTT+TGG	+	chr3_3:88520376-88520395	None:intergenic	60.0%
	GGTGCTTGTCAGGCTACTGG+TGG	-	chr3_3:88520789-88520808	Msa0482080:intron	60.0%
	CGGGAGCAAGAAGGCCTATG+AGG	-	chr3_3:88521256-88521275	Msa0482080:CDS	60.0%
	ACGGTTTCGCGGTCGAACCG+TGG	-	chr3_3:88520382-88520401	Msa0482080:intron	65.0%
	GTTTCGCGGTCGAACCGTGG+CGG	-	chr3_3:88520385-88520404	Msa0482080:intron	65.0%
	ACGGTTTCGCGGTCGAACCG+TGG	-	chr3_3:88520382-88520401	Msa0482080:intron	65.0%
	GTTTCGCGGTCGAACCGTGG+CGG	-	chr3_3:88520385-88520404	Msa0482080:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	88519965	88521929	88519965	ID=Msa0482080;Name=Msa0482080
chr3_3	mRNA	88519965	88521929	88519965	ID=Msa0482080-mRNA-1;Parent=Msa0482080;Name=Msa0482080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=98\|1\|1\|1\|1\|1\|3\|306\|310
chr3_3	exon	88519965	88520317	88519965	ID=Msa0482080-mRNA-1:exon:25866;Parent=Msa0482080-mRNA-1
chr3_3	exon	88520600	88520653	88520600	ID=Msa0482080-mRNA-1:exon:25865;Parent=Msa0482080-mRNA-1
chr3_3	exon	88521000	88521929	88521000	ID=Msa0482080-mRNA-1:exon:25864;Parent=Msa0482080-mRNA-1
chr3_3	five_prime_UTR	88521832	88521929	88521832	ID=Msa0482080-mRNA-1:five_prime_utr;Parent=Msa0482080-mRNA-1
chr3_3	CDS	88521000	88521831	88521000	ID=Msa0482080-mRNA-1:cds;Parent=Msa0482080-mRNA-1
chr3_3	CDS	88520600	88520653	88520600	ID=Msa0482080-mRNA-1:cds;Parent=Msa0482080-mRNA-1
chr3_3	CDS	88520271	88520317	88520271	ID=Msa0482080-mRNA-1:cds;Parent=Msa0482080-mRNA-1
chr3_3	three_prime_UTR	88519965	88520270	88519965	ID=Msa0482080-mRNA-1:three_prime_utr;Parent=Msa0482080-mRNA-1

Gene Sequence

>Msa0482080

ATGTCCAAATTCTTCACTACCTTCCATCATCTAATCATTATATTATCAATAGCATATCTAATCATCCCTTCAAGTTGTTCTAACAACACATGTAGATCATATTGTGGAAACATCACAATAGATTACCCATTTGCCCTCCAAAACGGATGTGGCCACCCAGGTTTCCGTGACCTACTCTTCTGCATAAACAACGTTCTCATGTTCCACGTAACCTCAGGTTCCTACAGAGTCCTACAAATAGATTACGCATACCAAGCTCTAACACTTCACGAACCACACATGTCTACGTGCGAAACACTAGTCCTAGGAACCAAAGGCAACGGTTTCGCGGTCGAACCGTGGCGGTCCCCATACATGAACCCAACACCCGACAACGTTTTCATGCTCATTTCTTGTTCACCTCGTTCACCTTTGTTTCAAGGCTTCCCTGATAAACATTTGCCATGCAGAAATGTTTCTGGTATGGGATGTGAAGAGTACTATGATTGTCCTGCTTGGAATATGATGGGCCATAAAAAGACGGGCTCTTCTTCGTTTTTTGGGTCTGGCCCACCTGAGTGTTGTGCTGTATCTTATGAAGCTATTAAGGGGATTAATCTAAGTAAGCTTGAGTGTGAAGGGTATAGTAGTGCTTATAGTGTTGCACCTTTGAAGGTTGATGGACCTAGTGATTGGACTTATGGGATCCGTGTTAGGTATTCTGTTCAAGGGAGTGATGAGTTTTGTGGTGCTTGTCAGGCTACTGGTGGTAGTTGTGGGTATGGTTCTGATGGGATTAGGCAAGTTTGTATGTGTGGAAACTTTAATTCAACTTCAAATTGTGACTCAGCAGTGGCCTTATTATCATCGGGAGCAAGAAGGCCTATGAGGTTGAAAATGTTTGCAGGACTTTTGGCCTATATGCTAGCATGGATGACAACCAACTGGATTTGA

Protein sequence

>Msa0482080

MSKFFTTFHHLIIILSIAYLIIPSSCSNNTCRSYCGNITIDYPFALQNGCGHPGFRDLLFCINNVLMFHVTSGSYRVLQIDYAYQALTLHEPHMSTCETLVLGTKGNGFAVEPWRSPYMNPTPDNVFMLISCSPRSPLFQGFPDKHLPCRNVSGMGCEEYYDCPAWNMMGHKKTGSSSFFGSGPPECCAVSYEAIKGINLSKLECEGYSSAYSVAPLKVDGPSDWTYGIRVRYSVQGSDEFCGACQATGGSCGYGSDGIRQVCMCGNFNSTSNCDSAVALLSSGARRPMRLKMFAGLLAYMLAWMTTNWI*