Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1417930 | A0A072UFT9 | 95.541 | 314 | 10 | 3 | 3 | 312 | 1 | 314 | 0.0 | 600 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006840 | Msa1417930 | 0.811804 | 5.829760e-51 | -8.615850e-47 |
Msa0015570 | Msa1417930 | 0.802545 | 5.333441e-49 | -8.615850e-47 |
Msa0038530 | Msa1417930 | 0.804462 | 2.135336e-49 | -8.615850e-47 |
Msa0045620 | Msa1417930 | 0.812848 | 3.448736e-51 | -8.615850e-47 |
Msa0050530 | Msa1417930 | 0.807906 | 4.020425e-50 | -8.615850e-47 |
Msa0063190 | Msa1417930 | 0.847083 | 1.447158e-59 | -8.615850e-47 |
Msa0069350 | Msa1417930 | 0.815277 | 1.003895e-51 | -8.615850e-47 |
Msa0072520 | Msa1417930 | 0.821491 | 3.925090e-53 | -8.615850e-47 |
Msa0080820 | Msa1417930 | 0.818654 | 1.751075e-52 | -8.615850e-47 |
Msa0084990 | Msa1417930 | 0.812814 | 3.508637e-51 | -8.615850e-47 |
Msa0086250 | Msa1417930 | 0.833940 | 3.994885e-56 | -8.615850e-47 |
Msa0100890 | Msa1417930 | 0.801080 | 1.065672e-48 | -8.615850e-47 |
Msa0109730 | Msa1417930 | 0.813596 | 2.362925e-51 | -8.615850e-47 |
Msa1348330 | Msa1417930 | 0.800147 | 1.651717e-48 | -8.615850e-47 |
Msa1349850 | Msa1417930 | -0.826581 | 2.507846e-54 | -8.615850e-47 |
Msa1356220 | Msa1417930 | 0.824269 | 8.846886e-54 | -8.615850e-47 |
Msa1356450 | Msa1417930 | 0.832041 | 1.185297e-55 | -8.615850e-47 |
Msa1357070 | Msa1417930 | 0.815799 | 7.683481e-52 | -8.615850e-47 |
Msa1362590 | Msa1417930 | 0.826797 | 2.227584e-54 | -8.615850e-47 |
Msa1368170 | Msa1417930 | 0.816189 | 6.286338e-52 | -8.615850e-47 |
Msa1371270 | Msa1417930 | 0.802566 | 5.279899e-49 | -8.615850e-47 |
Msa1371800 | Msa1417930 | 0.819021 | 1.445495e-52 | -8.615850e-47 |
Msa1372030 | Msa1417930 | 0.804561 | 2.035934e-49 | -8.615850e-47 |
Msa1376310 | Msa1417930 | 0.818720 | 1.691636e-52 | -8.615850e-47 |
Msa1381800 | Msa1417930 | 0.813168 | 2.934370e-51 | -8.615850e-47 |
Msa1385570 | Msa1417930 | 0.825788 | 3.873261e-54 | -8.615850e-47 |
Msa1389310 | Msa1417930 | 0.809820 | 1.566390e-50 | -8.615850e-47 |
Msa1406720 | Msa1417930 | 0.833092 | 6.502385e-56 | -8.615850e-47 |
Msa1410160 | Msa1417930 | 0.809782 | 1.596437e-50 | -8.615850e-47 |
Msa1417930 | Msa1438510 | 0.806315 | 8.730131e-50 | -8.615850e-47 |
Msa1417930 | Msa1450290 | 0.822685 | 2.075763e-53 | -8.615850e-47 |
Msa1417930 | Msa1456040 | 0.818021 | 2.436225e-52 | -8.615850e-47 |
Msa0612520 | Msa1417930 | 0.866774 | 2.230235e-65 | -8.615850e-47 |
Msa0616230 | Msa1417930 | 0.827215 | 1.769107e-54 | -8.615850e-47 |
Msa0619710 | Msa1417930 | 0.830771 | 2.434049e-55 | -8.615850e-47 |
Msa0620900 | Msa1417930 | 0.844318 | 8.141361e-59 | -8.615850e-47 |
Msa0647440 | Msa1417930 | 0.825994 | 3.460526e-54 | -8.615850e-47 |
Msa0653160 | Msa1417930 | 0.851404 | 9.072772e-61 | -8.615850e-47 |
Msa0655710 | Msa1417930 | 0.825303 | 5.044840e-54 | -8.615850e-47 |
Msa0660090 | Msa1417930 | 0.854179 | 1.462554e-61 | -8.615850e-47 |
Msa0660260 | Msa1417930 | 0.813373 | 2.645297e-51 | -8.615850e-47 |
Msa0663290 | Msa1417930 | 0.808473 | 3.043766e-50 | -8.615850e-47 |
Msa0664070 | Msa1417930 | 0.803154 | 3.992035e-49 | -8.615850e-47 |
Msa0687090 | Msa1417930 | 0.805643 | 1.209183e-49 | -8.615850e-47 |
Msa0688620 | Msa1417930 | 0.815359 | 9.623924e-52 | -8.615850e-47 |
Msa0690320 | Msa1417930 | 0.829732 | 4.365664e-55 | -8.615850e-47 |
Msa0695560 | Msa1417930 | 0.856744 | 2.614794e-62 | -8.615850e-47 |
Msa0699560 | Msa1417930 | 0.816059 | 6.720678e-52 | -8.615850e-47 |
Msa0701250 | Msa1417930 | 0.815324 | 9.800726e-52 | -8.615850e-47 |
Msa0706150 | Msa1417930 | 0.833162 | 6.248599e-56 | -8.615850e-47 |
Msa0708020 | Msa1417930 | 0.830852 | 2.325907e-55 | -8.615850e-47 |
Msa0749190 | Msa1417930 | 0.816639 | 4.985122e-52 | -8.615850e-47 |
Msa0750520 | Msa1417930 | 0.820403 | 6.987449e-53 | -8.615850e-47 |
Msa0766860 | Msa1417930 | 0.806497 | 7.993653e-50 | -8.615850e-47 |
Msa0831820 | Msa1417930 | 0.805093 | 1.576701e-49 | -8.615850e-47 |
Msa0132700 | Msa1417930 | 0.814336 | 1.622393e-51 | -8.615850e-47 |
Msa0134830 | Msa1417930 | 0.833975 | 3.915091e-56 | -8.615850e-47 |
Msa0173380 | Msa1417930 | 0.872077 | 4.195236e-67 | -8.615850e-47 |
Msa0177830 | Msa1417930 | 0.804648 | 1.952478e-49 | -8.615850e-47 |
Msa0177970 | Msa1417930 | 0.808623 | 2.827299e-50 | -8.615850e-47 |
Msa0181880 | Msa1417930 | 0.815850 | 7.482423e-52 | -8.615850e-47 |
Msa0191570 | Msa1417930 | 0.802744 | 4.850996e-49 | -8.615850e-47 |
Msa0214210 | Msa1417930 | 0.840411 | 8.838175e-58 | -8.615850e-47 |
Msa0221180 | Msa1417930 | 0.827664 | 1.380610e-54 | -8.615850e-47 |
Msa1228630 | Msa1417930 | 0.833367 | 5.554471e-56 | -8.615850e-47 |
Msa1231440 | Msa1417930 | 0.800638 | 1.311821e-48 | -8.615850e-47 |
Msa1242130 | Msa1417930 | 0.823983 | 1.032638e-53 | -8.615850e-47 |
Msa1250610 | Msa1417930 | 0.811569 | 6.555911e-51 | -8.615850e-47 |
Msa1267930 | Msa1417930 | 0.815586 | 8.568272e-52 | -8.615850e-47 |
Msa1283960 | Msa1417930 | 0.826727 | 2.315117e-54 | -8.615850e-47 |
Msa1296860 | Msa1417930 | 0.811930 | 5.472851e-51 | -8.615850e-47 |
Msa1299980 | Msa1417930 | 0.817801 | 2.730865e-52 | -8.615850e-47 |
Msa1308850 | Msa1417930 | 0.802250 | 6.132633e-49 | -8.615850e-47 |
Msa1308860 | Msa1417930 | 0.809046 | 2.295727e-50 | -8.615850e-47 |
Msa1326640 | Msa1417930 | 0.817159 | 3.810547e-52 | -8.615850e-47 |
Msa1326680 | Msa1417930 | 0.814033 | 1.892904e-51 | -8.615850e-47 |
Msa1331650 | Msa1417930 | 0.806807 | 6.874381e-50 | -8.615850e-47 |
Msa1333500 | Msa1417930 | 0.819441 | 1.159527e-52 | -8.615850e-47 |
Msa1341750 | Msa1417930 | 0.978459 | 7.202166e-146 | -8.615850e-47 |
Msa1342810 | Msa1417930 | 0.823245 | 1.536681e-53 | -8.615850e-47 |
Msa1343460 | Msa1417930 | 0.802911 | 4.480055e-49 | -8.615850e-47 |
Msa0383560 | Msa1417930 | 0.823587 | 1.278502e-53 | -8.615850e-47 |
Msa0384870 | Msa1417930 | 0.805621 | 1.222072e-49 | -8.615850e-47 |
Msa0394500 | Msa1417930 | 0.831297 | 1.808329e-55 | -8.615850e-47 |
Msa0420430 | Msa1417930 | 0.819998 | 8.651666e-53 | -8.615850e-47 |
Msa0420680 | Msa1417930 | 0.841294 | 5.184824e-58 | -8.615850e-47 |
Msa0429830 | Msa1417930 | 0.808616 | 2.837827e-50 | -8.615850e-47 |
Msa0430080 | Msa1417930 | 0.810838 | 9.447225e-51 | -8.615850e-47 |
Msa0430170 | Msa1417930 | 0.804531 | 2.066039e-49 | -8.615850e-47 |
Msa0432200 | Msa1417930 | 0.822985 | 1.767094e-53 | -8.615850e-47 |
Msa0432690 | Msa1417930 | 0.812331 | 4.473213e-51 | -8.615850e-47 |
Msa0434090 | Msa1417930 | 0.830861 | 2.313860e-55 | -8.615850e-47 |
Msa0442090 | Msa1417930 | 0.829950 | 3.863217e-55 | -8.615850e-47 |
Msa0464050 | Msa1417930 | 0.808894 | 2.474496e-50 | -8.615850e-47 |
Msa0466520 | Msa1417930 | 0.834470 | 2.941466e-56 | -8.615850e-47 |
Msa0477900 | Msa1417930 | 0.814819 | 1.268800e-51 | -8.615850e-47 |
Msa0999950 | Msa1417930 | 0.809802 | 1.580206e-50 | -8.615850e-47 |
Msa1008850 | Msa1417930 | 0.818672 | 1.734365e-52 | -8.615850e-47 |
Msa1033420 | Msa1417930 | 0.886639 | 2.870120e-72 | -8.615850e-47 |
Msa1034960 | Msa1417930 | 0.831763 | 1.388044e-55 | -8.615850e-47 |
Msa1042300 | Msa1417930 | 0.835530 | 1.590164e-56 | -8.615850e-47 |
Msa1046120 | Msa1417930 | 0.853966 | 1.684995e-61 | -8.615850e-47 |
Msa1071410 | Msa1417930 | 0.818823 | 1.602727e-52 | -8.615850e-47 |
Msa1073060 | Msa1417930 | 0.872595 | 2.818969e-67 | -8.615850e-47 |
Msa1079640 | Msa1417930 | 0.804359 | 2.243778e-49 | -8.615850e-47 |
Msa1085680 | Msa1417930 | 0.830944 | 2.207819e-55 | -8.615850e-47 |
Msa1091050 | Msa1417930 | 0.860002 | 2.797209e-63 | -8.615850e-47 |
Msa1106220 | Msa1417930 | 0.807055 | 6.093833e-50 | -8.615850e-47 |
Msa0241040 | Msa1417930 | 0.827726 | 1.334277e-54 | -8.615850e-47 |
Msa0260630 | Msa1417930 | 0.802313 | 5.951582e-49 | -8.615850e-47 |
Msa0262750 | Msa1417930 | 0.827012 | 1.978942e-54 | -8.615850e-47 |
Msa0274650 | Msa1417930 | 0.815170 | 1.060163e-51 | -8.615850e-47 |
Msa0278840 | Msa1417930 | 0.854166 | 1.474836e-61 | -8.615850e-47 |
Msa0281540 | Msa1417930 | 0.809720 | 1.645823e-50 | -8.615850e-47 |
Msa0284800 | Msa1417930 | 0.821049 | 4.962688e-53 | -8.615850e-47 |
Msa0300470 | Msa1417930 | 0.823466 | 1.364108e-53 | -8.615850e-47 |
Msa0316720 | Msa1417930 | -0.802635 | 5.110243e-49 | -8.615850e-47 |
Msa0318620 | Msa1417930 | 0.822092 | 2.849440e-53 | -8.615850e-47 |
Msa0336430 | Msa1417930 | 0.808565 | 2.909062e-50 | -8.615850e-47 |
Msa0336520 | Msa1417930 | 0.819120 | 1.372116e-52 | -8.615850e-47 |
Msa0337970 | Msa1417930 | 0.814299 | 1.653886e-51 | -8.615850e-47 |
Msa0344110 | Msa1417930 | 0.805610 | 1.228513e-49 | -8.615850e-47 |
Msa0347780 | Msa1417930 | 0.804835 | 1.785109e-49 | -8.615850e-47 |
Msa1115610 | Msa1417930 | -0.808477 | 3.038197e-50 | -8.615850e-47 |
Msa1130780 | Msa1417930 | 0.982389 | 5.740448e-155 | -8.615850e-47 |
Msa1131150 | Msa1417930 | 0.824600 | 7.391580e-54 | -8.615850e-47 |
Msa1133970 | Msa1417930 | 0.854361 | 1.295587e-61 | -8.615850e-47 |
Msa1134040 | Msa1417930 | 0.855098 | 7.923720e-62 | -8.615850e-47 |
Msa1144990 | Msa1417930 | 0.834168 | 3.503589e-56 | -8.615850e-47 |
Msa1154630 | Msa1417930 | 0.805745 | 1.150924e-49 | -8.615850e-47 |
Msa1160780 | Msa1417930 | 0.855877 | 4.695580e-62 | -8.615850e-47 |
Msa1166190 | Msa1417930 | 0.808940 | 2.419093e-50 | -8.615850e-47 |
Msa1166290 | Msa1417930 | 0.822144 | 2.771430e-53 | -8.615850e-47 |
Msa1188930 | Msa1417930 | 0.804533 | 2.064238e-49 | -8.615850e-47 |
Msa1194290 | Msa1417930 | 0.813496 | 2.485573e-51 | -8.615850e-47 |
Msa1212920 | Msa1417930 | 0.812140 | 4.924896e-51 | -8.615850e-47 |
Msa0500920 | Msa1417930 | 0.810263 | 1.257212e-50 | -8.615850e-47 |
Msa0506920 | Msa1417930 | 0.807423 | 5.091181e-50 | -8.615850e-47 |
Msa0512520 | Msa1417930 | 0.830596 | 2.686659e-55 | -8.615850e-47 |
Msa0513080 | Msa1417930 | 0.800149 | 1.650235e-48 | -8.615850e-47 |
Msa0521060 | Msa1417930 | 0.832434 | 9.475365e-56 | -8.615850e-47 |
Msa0521320 | Msa1417930 | 0.800094 | 1.693137e-48 | -8.615850e-47 |
Msa0521940 | Msa1417930 | 0.804688 | 1.916183e-49 | -8.615850e-47 |
Msa0527850 | Msa1417930 | 0.805631 | 1.215788e-49 | -8.615850e-47 |
Msa0541740 | Msa1417930 | 0.814558 | 1.448948e-51 | -8.615850e-47 |
Msa0557850 | Msa1417930 | 0.862442 | 5.052676e-64 | -8.615850e-47 |
Msa0562350 | Msa1417930 | 0.804709 | 1.896258e-49 | -8.615850e-47 |
Msa0564980 | Msa1417930 | 0.807325 | 5.341233e-50 | -8.615850e-47 |
Msa0570010 | Msa1417930 | 0.820754 | 5.804541e-53 | -8.615850e-47 |
Msa0571350 | Msa1417930 | 0.829584 | 4.744600e-55 | -8.615850e-47 |
Msa0574660 | Msa1417930 | 0.820947 | 5.239604e-53 | -8.615850e-47 |
Msa0575710 | Msa1417930 | 0.812546 | 4.014248e-51 | -8.615850e-47 |
Msa0576330 | Msa1417930 | 0.833782 | 4.377179e-56 | -8.615850e-47 |
Msa0582460 | Msa1417930 | 0.800747 | 1.246731e-48 | -8.615850e-47 |
Msa0856220 | Msa1417930 | 0.806701 | 7.237698e-50 | -8.615850e-47 |
Msa0876630 | Msa1417930 | 0.828912 | 6.907019e-55 | -8.615850e-47 |
Msa0929900 | Msa1417930 | 0.807230 | 5.595478e-50 | -8.615850e-47 |
Msa0930950 | Msa1417930 | -0.826724 | 2.318505e-54 | -8.615850e-47 |
Msa0965470 | Msa1417930 | 0.816843 | 4.487508e-52 | -8.615850e-47 |
Msa0970040 | Msa1417930 | 0.801441 | 8.992945e-49 | -8.615850e-47 |
Msa0978980 | Msa1417930 | 0.827833 | 1.257618e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1417930 | MtrunA17_Chr8g0345591 | 67.365 | 334 | 80 | 6 | 3 | 312 | 1 | 329 | 2.00e-159 | 447 |
Msa1417930 | MtrunA17_Chr7g0276511 | 90.643 | 171 | 15 | 1 | 1 | 170 | 7 | 177 | 6.81e-99 | 288 |
Msa1417930 | MtrunA17_Chr7g0276501 | 93.269 | 104 | 5 | 1 | 211 | 312 | 6 | 109 | 1.09e-65 | 201 |
Msa1417930 | MtrunA17_Chr8g0392901 | 33.889 | 180 | 101 | 7 | 124 | 294 | 87 | 257 | 1.12e-14 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1417930 | AT2G46890.1 | 63.467 | 323 | 96 | 4 | 8 | 312 | 4 | 322 | 2.63e-141 | 402 |
Msa1417930 | AT1G18180.2 | 32.683 | 205 | 115 | 8 | 97 | 290 | 61 | 253 | 2.35e-15 | 75.5 |
Msa1417930 | AT1G18180.1 | 32.683 | 205 | 115 | 8 | 97 | 290 | 61 | 253 | 2.99e-15 | 75.5 |
Msa1417930 | AT1G73650.2 | 32.258 | 217 | 129 | 9 | 97 | 305 | 61 | 267 | 1.55e-12 | 67.4 |
Msa1417930 | AT1G73650.5 | 32.258 | 217 | 129 | 9 | 97 | 305 | 61 | 267 | 1.60e-12 | 67.4 |
Msa1417930 | AT1G73650.3 | 32.258 | 217 | 129 | 9 | 97 | 305 | 61 | 267 | 2.43e-12 | 67.0 |
Msa1417930 | AT1G73650.1 | 35.099 | 151 | 89 | 5 | 163 | 305 | 36 | 185 | 6.33e-12 | 64.3 |
Msa1417930 | AT1G73650.4 | 35.099 | 151 | 89 | 5 | 163 | 305 | 36 | 185 | 6.43e-12 | 64.3 |
Find 117 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTGGCTCACTATGATTTC+TGG | 0.120398 | tig0024531:-28711 | Msa1417930:CDS |
TGCAGATGATTGACCCTTAT+TGG | 0.153787 | tig0024531:-28777 | Msa1417930:intron |
GGGCATGGGTGGACCTTTAT+AGG | 0.223333 | tig0024531:-28244 | Msa1417930:CDS |
AGAAAAGGAGATTGACTAAT+AGG | 0.224743 | tig0024531:+28961 | None:intergenic |
TACTGAGTGGATAACATAAA+AGG | 0.250782 | tig0024531:+28483 | None:intergenic |
TGGTGGGGACTTGTAGTATT+TGG | 0.269007 | tig0024531:-28277 | Msa1417930:CDS |
CATTCTTTGTTCCACAAGTT+TGG | 0.288006 | tig0024531:+28186 | None:intergenic |
GCTGTTGTTGTGTGTGTATC+TGG | 0.295142 | tig0024531:-28430 | Msa1417930:CDS |
ACTGATATGATTCAACAATA+TGG | 0.297749 | tig0024531:-28580 | Msa1417930:CDS |
TCAACGTCAATATCCTCTTT+TGG | 0.304991 | tig0024531:-28935 | Msa1417930:CDS |
ACAGGTATCACTGTCCAATA+AGG | 0.308159 | tig0024531:+28763 | None:intergenic |
ATTGCTCAACACAATGTGTT+TGG | 0.338794 | tig0024531:-28218 | Msa1417930:CDS |
TTACCTATGTAAAAGATATA+TGG | 0.338865 | tig0024531:+27891 | None:intergenic |
GAACGCTGTGATAGCATTCT+TGG | 0.342436 | tig0024531:-29060 | Msa1417930:CDS |
TTGGTTGGAACTTGGGGCAT+GGG | 0.350925 | tig0024531:-28258 | Msa1417930:CDS |
TAAATCAGCCTTTGAACATC+TGG | 0.357916 | tig0024531:-28462 | Msa1417930:CDS |
AGCTGCTCACCAAAGTAATT+AGG | 0.361585 | tig0024531:+28304 | None:intergenic |
GGAAGGCAGAAACAAATTAA+AGG | 0.362728 | tig0024531:-29131 | Msa1417930:five_prime_UTR |
CCTCACCAGTTATTGCTCAT+TGG | 0.368116 | tig0024531:-28517 | Msa1417930:CDS |
AAGGGTGGGCTGCATAATAA+TGG | 0.377206 | tig0024531:+28731 | None:intergenic |
TGTAGTATTTGGTTGGAACT+TGG | 0.385747 | tig0024531:-28266 | Msa1417930:CDS |
TTATTATGCAGCCCACCCTT+TGG | 0.386930 | tig0024531:-28728 | Msa1417930:CDS |
TTGCTCAACACAATGTGTTT+GGG | 0.407007 | tig0024531:-28217 | Msa1417930:CDS |
CACAGCGTTCTTCAAATTGC+TGG | 0.420935 | tig0024531:+29073 | None:intergenic |
TTTGGTTGGAACTTGGGGCA+TGG | 0.421477 | tig0024531:-28259 | Msa1417930:CDS |
GTAGTATTTGGTTGGAACTT+GGG | 0.421705 | tig0024531:-28265 | Msa1417930:CDS |
ACAAAAGAGTAGAAGCATAT+AGG | 0.425663 | tig0024531:-28153 | Msa1417930:CDS |
TACTCCACACCCAAGTCAAC+AGG | 0.431420 | tig0024531:+28671 | None:intergenic |
GCCTTTGAACATCTGGGACT+TGG | 0.435472 | tig0024531:-28455 | Msa1417930:CDS |
AATGGGGTGCAAGGGAAGAT+TGG | 0.438963 | tig0024531:-28609 | Msa1417930:CDS |
GAACGAGAGGTAGAAGAGAA+TGG | 0.441376 | tig0024531:+29025 | None:intergenic |
CTCTAATCCAATCCAGCCAC+TGG | 0.444547 | tig0024531:-28905 | Msa1417930:CDS |
TTTGTGAATAACAATGGTAA+TGG | 0.445517 | tig0024531:-28367 | Msa1417930:CDS |
TATTGACGTTGAAGAAGAAA+AGG | 0.446845 | tig0024531:+28946 | None:intergenic |
ACAATCCAATGAGCAATAAC+TGG | 0.447606 | tig0024531:+28512 | None:intergenic |
TAGTATTTGGTTGGAACTTG+GGG | 0.450578 | tig0024531:-28264 | Msa1417930:CDS |
GTTGGAACTTGGGGCATGGG+TGG | 0.451857 | tig0024531:-28255 | Msa1417930:CDS |
AGGTAGGTAGATGGAGAAGA+AGG | 0.452132 | tig0024531:+28537 | None:intergenic |
GTTGAGCAATGCTCCTATAA+AGG | 0.453733 | tig0024531:+28231 | None:intergenic |
TACCCACCCAGTGGCTGGAT+TGG | 0.456487 | tig0024531:+28898 | None:intergenic |
ATTACTTTGGTGAGCAGCTA+TGG | 0.459668 | tig0024531:-28300 | Msa1417930:CDS |
GGGGACTTGTAGTATTTGGT+TGG | 0.460375 | tig0024531:-28273 | Msa1417930:CDS |
ATTATTTATATTCAACTTGG+TGG | 0.463250 | tig0024531:-27980 | Msa1417930:three_prime_UTR |
ATCAAATGTCAGGCGATTCA+AGG | 0.469130 | tig0024531:+27626 | None:intergenic |
ACTCGGCATCCTAATTACTT+TGG | 0.476296 | tig0024531:-28313 | Msa1417930:CDS |
TGGGAAAATTTGCCTTGTCC+CGG | 0.476990 | tig0024531:-27663 | Msa1417930:three_prime_UTR |
TAGAAGAGAATGGAGGGAAG+AGG | 0.478736 | tig0024531:+29035 | None:intergenic |
CAGACGAGAGAAGTGGCAAT+GGG | 0.479915 | tig0024531:-28626 | Msa1417930:CDS |
AAGGAGATTGACTAATAGGA+GGG | 0.480012 | tig0024531:+28965 | None:intergenic |
AGAAATCTCACGAAGGCATC+GGG | 0.484762 | tig0024531:+27750 | None:intergenic |
GACTAATTCTCCATATTACA+TGG | 0.487679 | tig0024531:-27683 | Msa1417930:three_prime_UTR |
ACTATGATTTCTGGAGATCA+AGG | 0.489125 | tig0024531:-28702 | Msa1417930:CDS |
TGGTGAGCAGCTATGGTGGT+GGG | 0.489748 | tig0024531:-28293 | Msa1417930:CDS |
TAACTGGTGAGGTAGGTAGA+TGG | 0.495738 | tig0024531:+28528 | None:intergenic |
ATCAGAACACAACTTCTGTA+TGG | 0.498222 | tig0024531:-28126 | Msa1417930:CDS |
ACTGAGTGGATAACATAAAA+GGG | 0.503941 | tig0024531:+28484 | None:intergenic |
CGAGAGGTAGAAGAGAATGG+AGG | 0.504128 | tig0024531:+29028 | None:intergenic |
TTGGTGAGCAGCTATGGTGG+TGG | 0.505228 | tig0024531:-28294 | Msa1417930:CDS |
CAGGTATCACTGTCCAATAA+GGG | 0.506881 | tig0024531:+28764 | None:intergenic |
AGATGAGTTGAACTTGAAGC+AGG | 0.514693 | tig0024531:+28099 | None:intergenic |
AGAAGTGGCAATGGGGTGCA+AGG | 0.516645 | tig0024531:-28618 | Msa1417930:CDS |
GAGAGGTAGAAGAGAATGGA+GGG | 0.519208 | tig0024531:+29029 | None:intergenic |
AACAATATGGAAAACATTGG+TGG | 0.523523 | tig0024531:-28567 | Msa1417930:CDS |
TTATTTATATTCAACTTGGT+GGG | 0.525632 | tig0024531:-27979 | Msa1417930:three_prime_UTR |
GAGAAATCTCACGAAGGCAT+CGG | 0.528908 | tig0024531:+27749 | None:intergenic |
TGATCCTTGAGAGTGGTTTG+TGG | 0.530278 | tig0024531:-28342 | Msa1417930:CDS |
CAAGGTAGAGAGTTCAAAGC+CGG | 0.538320 | tig0024531:+27644 | None:intergenic |
AATATGGAAAACATTGGTGG+TGG | 0.539715 | tig0024531:-28564 | Msa1417930:CDS |
AAAGGAGATTGACTAATAGG+AGG | 0.543649 | tig0024531:+28964 | None:intergenic |
CGATGAGTAGATCAAATGTC+AGG | 0.545124 | tig0024531:+27616 | None:intergenic |
TAATAATGGACAAGCATCAC+AGG | 0.547440 | tig0024531:+28745 | None:intergenic |
TTAATTATTTATATTCAACT+TGG | 0.553034 | tig0024531:-27983 | Msa1417930:three_prime_UTR |
GGTGAGCAGCTATGGTGGTG+GGG | 0.554190 | tig0024531:-28292 | Msa1417930:CDS |
TGATCCTGTTGACTTGGGTG+TGG | 0.558189 | tig0024531:-28675 | Msa1417930:CDS |
GGGTTATGTGACCAAACTTG+TGG | 0.558732 | tig0024531:-28197 | Msa1417930:CDS |
GAGAGTTCAAAGCCGGGACA+AGG | 0.561086 | tig0024531:+27651 | None:intergenic |
GGATAGTGATCCTGTTGACT+TGG | 0.567382 | tig0024531:-28681 | Msa1417930:CDS |
CAGAAATCATAGTGAGCCAA+AGG | 0.576012 | tig0024531:+28712 | None:intergenic |
GAATACTGAAACATGAGCAT+GGG | 0.583850 | tig0024531:-29101 | Msa1417930:exon |
TCTCTCGTCTGAAGTAGTTG+TGG | 0.584105 | tig0024531:+28638 | None:intergenic |
AAATCAGCCTTTGAACATCT+GGG | 0.586715 | tig0024531:-28461 | Msa1417930:CDS |
ACCAAGTCCCAGATGTTCAA+AGG | 0.590896 | tig0024531:+28454 | None:intergenic |
GATGAGTTGAACTTGAAGCA+GGG | 0.598199 | tig0024531:+28100 | None:intergenic |
TGAGCAATAACTGGTGAGGT+AGG | 0.598678 | tig0024531:+28521 | None:intergenic |
GCTATAATATATAAATAAAG+CGG | 0.602549 | tig0024531:-29152 | None:intergenic |
AGAAATCATAGTGAGCCAAA+GGG | 0.603318 | tig0024531:+28713 | None:intergenic |
GGAGATTGACTAATAGGAGG+GGG | 0.603415 | tig0024531:+28967 | None:intergenic |
GAAGTGGCAATGGGGTGCAA+GGG | 0.603591 | tig0024531:-28617 | Msa1417930:CDS |
TCTAATCCAATCCAGCCACT+GGG | 0.603829 | tig0024531:-28904 | Msa1417930:intron |
ATCATAGTGAGCCAAAGGGT+GGG | 0.605285 | tig0024531:+28717 | None:intergenic |
TTCAACAATATGGAAAACAT+TGG | 0.608096 | tig0024531:-28570 | Msa1417930:CDS |
TCAGACGAGAGAAGTGGCAA+TGG | 0.611058 | tig0024531:-28627 | Msa1417930:CDS |
ATGAGTTGAACTTGAAGCAG+GGG | 0.615221 | tig0024531:+28101 | None:intergenic |
AATCATAGTGAGCCAAAGGG+TGG | 0.615234 | tig0024531:+28716 | None:intergenic |
TAATATATAAATAAAGCGGA+AGG | 0.620826 | tig0024531:-29148 | None:intergenic |
AAGGTAGAGAGTTCAAAGCC+GGG | 0.622225 | tig0024531:+27645 | None:intergenic |
AGTACCACAAACCACTCTCA+AGG | 0.625195 | tig0024531:+28338 | None:intergenic |
ATATGGAAAACATTGGTGGT+GGG | 0.626188 | tig0024531:-28563 | Msa1417930:CDS |
TCAAAGGCTGATTTACTGAG+TGG | 0.626720 | tig0024531:+28470 | None:intergenic |
GTGGTTTGTGGTACTATACT+CGG | 0.626740 | tig0024531:-28330 | Msa1417930:CDS |
TTAGAGCGATGAGCCAAAAG+AGG | 0.630992 | tig0024531:+28922 | None:intergenic |
ACTACTTCAGACGAGAGAAG+TGG | 0.633464 | tig0024531:-28633 | Msa1417930:CDS |
TGAATACTGAAACATGAGCA+TGG | 0.633939 | tig0024531:-29102 | Msa1417930:exon |
ACTAATTCTCCATATTACAT+GGG | 0.634875 | tig0024531:-27682 | Msa1417930:three_prime_UTR |
AGGAGATTGACTAATAGGAG+GGG | 0.636049 | tig0024531:+28966 | None:intergenic |
GATAGTGATCCTGTTGACTT+GGG | 0.636502 | tig0024531:-28680 | Msa1417930:CDS |
CCAATGAGCAATAACTGGTG+AGG | 0.640552 | tig0024531:+28517 | None:intergenic |
GTAATATGGAGAATTAGTCA+TGG | 0.652216 | tig0024531:+27687 | None:intergenic |
TGGCATTATTAATGAACGAG+AGG | 0.652470 | tig0024531:+29012 | None:intergenic |
GCGATAGCAGAATGGGTGAG+TGG | 0.655552 | tig0024531:+28992 | None:intergenic |
ACTTTGGTGAGCAGCTATGG+TGG | 0.658770 | tig0024531:-28297 | Msa1417930:CDS |
TATCTGCAAAGTATGCTATG+AGG | 0.672642 | tig0024531:+28404 | None:intergenic |
CTGACATTTGATCTACTCAT+CGG | 0.676394 | tig0024531:-27615 | Msa1417930:three_prime_UTR |
AATGGTATGATCCTTGAGAG+TGG | 0.682971 | tig0024531:-28349 | Msa1417930:CDS |
AGACGAGAGAAGTGGCAATG+GGG | 0.720125 | tig0024531:-28625 | Msa1417930:CDS |
AATACTGAAACATGAGCATG+GGG | 0.729517 | tig0024531:-29100 | Msa1417930:exon |
TAGTGAGAGAAATCTCACGA+AGG | 0.755280 | tig0024531:+27743 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAATTATTTATATTCAACT+TGG | - | tig0024531:28740-28759 | Msa1417930:CDS | 10.0% |
!! | TTAATTATTTATATTCAACT+TGG | - | tig0024531:28740-28759 | Msa1417930:CDS | 10.0% |
!!! | TACAATTTTGTGAATAACAA+TGG | - | tig0024531:28350-28369 | Msa1417930:CDS | 20.0% |
!! | AAAAAATAGAAAAAGAAGGA+TGG | + | tig0024531:28687-28706 | None:intergenic | 20.0% |
!! | CAACAAAAAATAGAAAAAGA+AGG | + | tig0024531:28691-28710 | None:intergenic | 20.0% |
!! | ATTATTTATATTCAACTTGG+TGG | - | tig0024531:28743-28762 | Msa1417930:CDS | 20.0% |
!! | TTATTTATATTCAACTTGGT+GGG | - | tig0024531:28744-28763 | Msa1417930:CDS | 20.0% |
!!! | TTAAATCGTAATTCTTTTTC+TGG | - | tig0024531:28771-28790 | Msa1417930:CDS | 20.0% |
!!! | TTTCCATATATCTTTTACAT+AGG | - | tig0024531:28829-28848 | Msa1417930:intron | 20.0% |
!! | TTACCTATGTAAAAGATATA+TGG | + | tig0024531:28835-28854 | None:intergenic | 20.0% |
!!! | TACAATTTTGTGAATAACAA+TGG | - | tig0024531:28350-28369 | Msa1417930:CDS | 20.0% |
!! | AAAAAATAGAAAAAGAAGGA+TGG | + | tig0024531:28687-28706 | None:intergenic | 20.0% |
!! | CAACAAAAAATAGAAAAAGA+AGG | + | tig0024531:28691-28710 | None:intergenic | 20.0% |
!! | ATTATTTATATTCAACTTGG+TGG | - | tig0024531:28743-28762 | Msa1417930:CDS | 20.0% |
!! | TTATTTATATTCAACTTGGT+GGG | - | tig0024531:28744-28763 | Msa1417930:CDS | 20.0% |
!!! | TTAAATCGTAATTCTTTTTC+TGG | - | tig0024531:28771-28790 | Msa1417930:CDS | 20.0% |
!!! | TTTCCATATATCTTTTACAT+AGG | - | tig0024531:28829-28848 | Msa1417930:intron | 20.0% |
!! | TTACCTATGTAAAAGATATA+TGG | + | tig0024531:28835-28854 | None:intergenic | 20.0% |
! | AGTTAGAAGTGATTAAAGAA+AGG | + | tig0024531:27870-27889 | None:intergenic | 25.0% |
! | ACTGATATGATTCAACAATA+TGG | - | tig0024531:28143-28162 | Msa1417930:CDS | 25.0% |
! | TTCAACAATATGGAAAACAT+TGG | - | tig0024531:28153-28172 | Msa1417930:CDS | 25.0% |
! | TTTGTGAATAACAATGGTAA+TGG | - | tig0024531:28356-28375 | Msa1417930:CDS | 25.0% |
! | ACTAATTCTCCATATTACAT+GGG | - | tig0024531:29041-29060 | Msa1417930:CDS | 25.0% |
! | AGTTAGAAGTGATTAAAGAA+AGG | + | tig0024531:27870-27889 | None:intergenic | 25.0% |
! | ACTGATATGATTCAACAATA+TGG | - | tig0024531:28143-28162 | Msa1417930:CDS | 25.0% |
! | TTCAACAATATGGAAAACAT+TGG | - | tig0024531:28153-28172 | Msa1417930:CDS | 25.0% |
! | TTTGTGAATAACAATGGTAA+TGG | - | tig0024531:28356-28375 | Msa1417930:CDS | 25.0% |
! | ACTAATTCTCCATATTACAT+GGG | - | tig0024531:29041-29060 | Msa1417930:CDS | 25.0% |
AGAAAAGGAGATTGACTAAT+AGG | + | tig0024531:27765-27784 | None:intergenic | 30.0% | |
TATTGACGTTGAAGAAGAAA+AGG | + | tig0024531:27780-27799 | None:intergenic | 30.0% | |
TAAAGAAAGGAAGAAGAGAT+AGG | + | tig0024531:27857-27876 | None:intergenic | 30.0% | |
AACAATATGGAAAACATTGG+TGG | - | tig0024531:28156-28175 | Msa1417930:CDS | 30.0% | |
ACTGAGTGGATAACATAAAA+GGG | + | tig0024531:28242-28261 | None:intergenic | 30.0% | |
TACTGAGTGGATAACATAAA+AGG | + | tig0024531:28243-28262 | None:intergenic | 30.0% | |
! | ACAAAAGAGTAGAAGCATAT+AGG | - | tig0024531:28570-28589 | Msa1417930:CDS | 30.0% |
!!! | GCATTCTTAGTTTTTTTGAG+TGG | + | tig0024531:28659-28678 | None:intergenic | 30.0% |
GTAATATGGAGAATTAGTCA+TGG | + | tig0024531:29039-29058 | None:intergenic | 30.0% | |
GACTAATTCTCCATATTACA+TGG | - | tig0024531:29040-29059 | Msa1417930:CDS | 30.0% | |
! | GCAAATTTTCCCATGTAATA+TGG | + | tig0024531:29053-29072 | None:intergenic | 30.0% |
AGAAAAGGAGATTGACTAAT+AGG | + | tig0024531:27765-27784 | None:intergenic | 30.0% | |
TATTGACGTTGAAGAAGAAA+AGG | + | tig0024531:27780-27799 | None:intergenic | 30.0% | |
TAAAGAAAGGAAGAAGAGAT+AGG | + | tig0024531:27857-27876 | None:intergenic | 30.0% | |
AACAATATGGAAAACATTGG+TGG | - | tig0024531:28156-28175 | Msa1417930:CDS | 30.0% | |
ACTGAGTGGATAACATAAAA+GGG | + | tig0024531:28242-28261 | None:intergenic | 30.0% | |
TACTGAGTGGATAACATAAA+AGG | + | tig0024531:28243-28262 | None:intergenic | 30.0% | |
! | ACAAAAGAGTAGAAGCATAT+AGG | - | tig0024531:28570-28589 | Msa1417930:CDS | 30.0% |
!!! | GCATTCTTAGTTTTTTTGAG+TGG | + | tig0024531:28659-28678 | None:intergenic | 30.0% |
GTAATATGGAGAATTAGTCA+TGG | + | tig0024531:29039-29058 | None:intergenic | 30.0% | |
GACTAATTCTCCATATTACA+TGG | - | tig0024531:29040-29059 | Msa1417930:CDS | 30.0% | |
! | GCAAATTTTCCCATGTAATA+TGG | + | tig0024531:29053-29072 | None:intergenic | 30.0% |
GGAAGGCAGAAACAAATTAA+AGG | - | tig0024531:27592-27611 | Msa1417930:three_prime_UTR | 35.0% | |
TGAATACTGAAACATGAGCA+TGG | - | tig0024531:27621-27640 | Msa1417930:three_prime_UTR | 35.0% | |
GAATACTGAAACATGAGCAT+GGG | - | tig0024531:27622-27641 | Msa1417930:three_prime_UTR | 35.0% | |
AATACTGAAACATGAGCATG+GGG | - | tig0024531:27623-27642 | Msa1417930:three_prime_UTR | 35.0% | |
TGGCATTATTAATGAACGAG+AGG | + | tig0024531:27714-27733 | None:intergenic | 35.0% | |
AAGGAGATTGACTAATAGGA+GGG | + | tig0024531:27761-27780 | None:intergenic | 35.0% | |
AAAGGAGATTGACTAATAGG+AGG | + | tig0024531:27762-27781 | None:intergenic | 35.0% | |
! | TCAACGTCAATATCCTCTTT+TGG | - | tig0024531:27788-27807 | Msa1417930:three_prime_UTR | 35.0% |
AAAGGAAGAAGAGATAGGTA+GGG | + | tig0024531:27852-27871 | None:intergenic | 35.0% | |
!! | TAATAATGGACAAGCATCAC+AGG | + | tig0024531:27981-28000 | None:intergenic | 35.0% |
AGAAATCATAGTGAGCCAAA+GGG | + | tig0024531:28013-28032 | None:intergenic | 35.0% | |
! | ACTATGATTTCTGGAGATCA+AGG | - | tig0024531:28021-28040 | Msa1417930:three_prime_UTR | 35.0% |
AATATGGAAAACATTGGTGG+TGG | - | tig0024531:28159-28178 | Msa1417930:CDS | 35.0% | |
! | ATATGGAAAACATTGGTGGT+GGG | - | tig0024531:28160-28179 | Msa1417930:CDS | 35.0% |
ACAATCCAATGAGCAATAAC+TGG | + | tig0024531:28214-28233 | None:intergenic | 35.0% | |
TAAATCAGCCTTTGAACATC+TGG | - | tig0024531:28261-28280 | Msa1417930:CDS | 35.0% | |
AAATCAGCCTTTGAACATCT+GGG | - | tig0024531:28262-28281 | Msa1417930:CDS | 35.0% | |
TATCTGCAAAGTATGCTATG+AGG | + | tig0024531:28322-28341 | None:intergenic | 35.0% | |
TGTAGTATTTGGTTGGAACT+TGG | - | tig0024531:28457-28476 | Msa1417930:CDS | 35.0% | |
GTAGTATTTGGTTGGAACTT+GGG | - | tig0024531:28458-28477 | Msa1417930:CDS | 35.0% | |
TAGTATTTGGTTGGAACTTG+GGG | - | tig0024531:28459-28478 | Msa1417930:CDS | 35.0% | |
ATTGCTCAACACAATGTGTT+TGG | - | tig0024531:28505-28524 | Msa1417930:CDS | 35.0% | |
TTGCTCAACACAATGTGTTT+GGG | - | tig0024531:28506-28525 | Msa1417930:CDS | 35.0% | |
CATTCTTTGTTCCACAAGTT+TGG | + | tig0024531:28540-28559 | None:intergenic | 35.0% | |
ATCAGAACACAACTTCTGTA+TGG | - | tig0024531:28597-28616 | Msa1417930:CDS | 35.0% | |
TAGAAAAAGAAGGATGGATC+AGG | + | tig0024531:28681-28700 | None:intergenic | 35.0% | |
CTGACATTTGATCTACTCAT+CGG | - | tig0024531:29108-29127 | Msa1417930:exon | 35.0% | |
GGAAGGCAGAAACAAATTAA+AGG | - | tig0024531:27592-27611 | Msa1417930:three_prime_UTR | 35.0% | |
TGAATACTGAAACATGAGCA+TGG | - | tig0024531:27621-27640 | Msa1417930:three_prime_UTR | 35.0% | |
GAATACTGAAACATGAGCAT+GGG | - | tig0024531:27622-27641 | Msa1417930:three_prime_UTR | 35.0% | |
AATACTGAAACATGAGCATG+GGG | - | tig0024531:27623-27642 | Msa1417930:three_prime_UTR | 35.0% | |
TGGCATTATTAATGAACGAG+AGG | + | tig0024531:27714-27733 | None:intergenic | 35.0% | |
AAGGAGATTGACTAATAGGA+GGG | + | tig0024531:27761-27780 | None:intergenic | 35.0% | |
AAAGGAGATTGACTAATAGG+AGG | + | tig0024531:27762-27781 | None:intergenic | 35.0% | |
! | TCAACGTCAATATCCTCTTT+TGG | - | tig0024531:27788-27807 | Msa1417930:three_prime_UTR | 35.0% |
AAAGGAAGAAGAGATAGGTA+GGG | + | tig0024531:27852-27871 | None:intergenic | 35.0% | |
!! | TAATAATGGACAAGCATCAC+AGG | + | tig0024531:27981-28000 | None:intergenic | 35.0% |
AGAAATCATAGTGAGCCAAA+GGG | + | tig0024531:28013-28032 | None:intergenic | 35.0% | |
! | ACTATGATTTCTGGAGATCA+AGG | - | tig0024531:28021-28040 | Msa1417930:three_prime_UTR | 35.0% |
AATATGGAAAACATTGGTGG+TGG | - | tig0024531:28159-28178 | Msa1417930:CDS | 35.0% | |
! | ATATGGAAAACATTGGTGGT+GGG | - | tig0024531:28160-28179 | Msa1417930:CDS | 35.0% |
ACAATCCAATGAGCAATAAC+TGG | + | tig0024531:28214-28233 | None:intergenic | 35.0% | |
TAAATCAGCCTTTGAACATC+TGG | - | tig0024531:28261-28280 | Msa1417930:CDS | 35.0% | |
AAATCAGCCTTTGAACATCT+GGG | - | tig0024531:28262-28281 | Msa1417930:CDS | 35.0% | |
TATCTGCAAAGTATGCTATG+AGG | + | tig0024531:28322-28341 | None:intergenic | 35.0% | |
TGTAGTATTTGGTTGGAACT+TGG | - | tig0024531:28457-28476 | Msa1417930:CDS | 35.0% | |
GTAGTATTTGGTTGGAACTT+GGG | - | tig0024531:28458-28477 | Msa1417930:CDS | 35.0% | |
TAGTATTTGGTTGGAACTTG+GGG | - | tig0024531:28459-28478 | Msa1417930:CDS | 35.0% | |
ATTGCTCAACACAATGTGTT+TGG | - | tig0024531:28505-28524 | Msa1417930:CDS | 35.0% | |
TTGCTCAACACAATGTGTTT+GGG | - | tig0024531:28506-28525 | Msa1417930:CDS | 35.0% | |
CATTCTTTGTTCCACAAGTT+TGG | + | tig0024531:28540-28559 | None:intergenic | 35.0% | |
ATCAGAACACAACTTCTGTA+TGG | - | tig0024531:28597-28616 | Msa1417930:CDS | 35.0% | |
TAGAAAAAGAAGGATGGATC+AGG | + | tig0024531:28681-28700 | None:intergenic | 35.0% | |
CTGACATTTGATCTACTCAT+CGG | - | tig0024531:29108-29127 | Msa1417930:exon | 35.0% | |
AGGAGATTGACTAATAGGAG+GGG | + | tig0024531:27760-27779 | None:intergenic | 40.0% | |
GAAAGGAAGAAGAGATAGGT+AGG | + | tig0024531:27853-27872 | None:intergenic | 40.0% | |
TGCAGATGATTGACCCTTAT+TGG | - | tig0024531:27946-27965 | Msa1417930:three_prime_UTR | 40.0% | |
CAGGTATCACTGTCCAATAA+GGG | + | tig0024531:27962-27981 | None:intergenic | 40.0% | |
ACAGGTATCACTGTCCAATA+AGG | + | tig0024531:27963-27982 | None:intergenic | 40.0% | |
CAGAAATCATAGTGAGCCAA+AGG | + | tig0024531:28014-28033 | None:intergenic | 40.0% | |
! | CTTTGGCTCACTATGATTTC+TGG | - | tig0024531:28012-28031 | Msa1417930:three_prime_UTR | 40.0% |
!! | GATAGTGATCCTGTTGACTT+GGG | - | tig0024531:28043-28062 | Msa1417930:three_prime_UTR | 40.0% |
! | TCAAAGGCTGATTTACTGAG+TGG | + | tig0024531:28256-28275 | None:intergenic | 40.0% |
AATGGTATGATCCTTGAGAG+TGG | - | tig0024531:28374-28393 | Msa1417930:CDS | 40.0% | |
! | GTGGTTTGTGGTACTATACT+CGG | - | tig0024531:28393-28412 | Msa1417930:CDS | 40.0% |
ACTCGGCATCCTAATTACTT+TGG | - | tig0024531:28410-28429 | Msa1417930:CDS | 40.0% | |
AGCTGCTCACCAAAGTAATT+AGG | + | tig0024531:28422-28441 | None:intergenic | 40.0% | |
ATTACTTTGGTGAGCAGCTA+TGG | - | tig0024531:28423-28442 | Msa1417930:CDS | 40.0% | |
GTTGAGCAATGCTCCTATAA+AGG | + | tig0024531:28495-28514 | None:intergenic | 40.0% | |
! | ATGAGTTGAACTTGAAGCAG+GGG | + | tig0024531:28625-28644 | None:intergenic | 40.0% |
! | GATGAGTTGAACTTGAAGCA+GGG | + | tig0024531:28626-28645 | None:intergenic | 40.0% |
! | AGATGAGTTGAACTTGAAGC+AGG | + | tig0024531:28627-28646 | None:intergenic | 40.0% |
TAGTGAGAGAAATCTCACGA+AGG | + | tig0024531:28983-29002 | None:intergenic | 40.0% | |
ATCAAATGTCAGGCGATTCA+AGG | + | tig0024531:29100-29119 | None:intergenic | 40.0% | |
CGATGAGTAGATCAAATGTC+AGG | + | tig0024531:29110-29129 | None:intergenic | 40.0% | |
AGGAGATTGACTAATAGGAG+GGG | + | tig0024531:27760-27779 | None:intergenic | 40.0% | |
GAAAGGAAGAAGAGATAGGT+AGG | + | tig0024531:27853-27872 | None:intergenic | 40.0% | |
TGCAGATGATTGACCCTTAT+TGG | - | tig0024531:27946-27965 | Msa1417930:three_prime_UTR | 40.0% | |
CAGGTATCACTGTCCAATAA+GGG | + | tig0024531:27962-27981 | None:intergenic | 40.0% | |
ACAGGTATCACTGTCCAATA+AGG | + | tig0024531:27963-27982 | None:intergenic | 40.0% | |
CAGAAATCATAGTGAGCCAA+AGG | + | tig0024531:28014-28033 | None:intergenic | 40.0% | |
! | CTTTGGCTCACTATGATTTC+TGG | - | tig0024531:28012-28031 | Msa1417930:three_prime_UTR | 40.0% |
!! | GATAGTGATCCTGTTGACTT+GGG | - | tig0024531:28043-28062 | Msa1417930:three_prime_UTR | 40.0% |
! | TCAAAGGCTGATTTACTGAG+TGG | + | tig0024531:28256-28275 | None:intergenic | 40.0% |
AATGGTATGATCCTTGAGAG+TGG | - | tig0024531:28374-28393 | Msa1417930:CDS | 40.0% | |
! | GTGGTTTGTGGTACTATACT+CGG | - | tig0024531:28393-28412 | Msa1417930:CDS | 40.0% |
ACTCGGCATCCTAATTACTT+TGG | - | tig0024531:28410-28429 | Msa1417930:CDS | 40.0% | |
AGCTGCTCACCAAAGTAATT+AGG | + | tig0024531:28422-28441 | None:intergenic | 40.0% | |
ATTACTTTGGTGAGCAGCTA+TGG | - | tig0024531:28423-28442 | Msa1417930:CDS | 40.0% | |
GTTGAGCAATGCTCCTATAA+AGG | + | tig0024531:28495-28514 | None:intergenic | 40.0% | |
! | ATGAGTTGAACTTGAAGCAG+GGG | + | tig0024531:28625-28644 | None:intergenic | 40.0% |
! | GATGAGTTGAACTTGAAGCA+GGG | + | tig0024531:28626-28645 | None:intergenic | 40.0% |
! | AGATGAGTTGAACTTGAAGC+AGG | + | tig0024531:28627-28646 | None:intergenic | 40.0% |
TAGTGAGAGAAATCTCACGA+AGG | + | tig0024531:28983-29002 | None:intergenic | 40.0% | |
ATCAAATGTCAGGCGATTCA+AGG | + | tig0024531:29100-29119 | None:intergenic | 40.0% | |
CGATGAGTAGATCAAATGTC+AGG | + | tig0024531:29110-29129 | None:intergenic | 40.0% | |
CACAGCGTTCTTCAAATTGC+TGG | + | tig0024531:27653-27672 | None:intergenic | 45.0% | |
GAACGCTGTGATAGCATTCT+TGG | - | tig0024531:27663-27682 | Msa1417930:three_prime_UTR | 45.0% | |
TAGAAGAGAATGGAGGGAAG+AGG | + | tig0024531:27691-27710 | None:intergenic | 45.0% | |
GAGAGGTAGAAGAGAATGGA+GGG | + | tig0024531:27697-27716 | None:intergenic | 45.0% | |
GAACGAGAGGTAGAAGAGAA+TGG | + | tig0024531:27701-27720 | None:intergenic | 45.0% | |
GGAGATTGACTAATAGGAGG+GGG | + | tig0024531:27759-27778 | None:intergenic | 45.0% | |
TTAGAGCGATGAGCCAAAAG+AGG | + | tig0024531:27804-27823 | None:intergenic | 45.0% | |
TCTAATCCAATCCAGCCACT+GGG | - | tig0024531:27819-27838 | Msa1417930:three_prime_UTR | 45.0% | |
!! | AAGGGTGGGCTGCATAATAA+TGG | + | tig0024531:27995-28014 | None:intergenic | 45.0% |
TTATTATGCAGCCCACCCTT+TGG | - | tig0024531:27995-28014 | Msa1417930:three_prime_UTR | 45.0% | |
ATCATAGTGAGCCAAAGGGT+GGG | + | tig0024531:28009-28028 | None:intergenic | 45.0% | |
AATCATAGTGAGCCAAAGGG+TGG | + | tig0024531:28010-28029 | None:intergenic | 45.0% | |
! | GGATAGTGATCCTGTTGACT+TGG | - | tig0024531:28042-28061 | Msa1417930:three_prime_UTR | 45.0% |
! | TCTCTCGTCTGAAGTAGTTG+TGG | + | tig0024531:28088-28107 | None:intergenic | 45.0% |
ACTACTTCAGACGAGAGAAG+TGG | - | tig0024531:28090-28109 | Msa1417930:CDS | 45.0% | |
AGGTAGGTAGATGGAGAAGA+AGG | + | tig0024531:28189-28208 | None:intergenic | 45.0% | |
TAACTGGTGAGGTAGGTAGA+TGG | + | tig0024531:28198-28217 | None:intergenic | 45.0% | |
TGAGCAATAACTGGTGAGGT+AGG | + | tig0024531:28205-28224 | None:intergenic | 45.0% | |
CCAATGAGCAATAACTGGTG+AGG | + | tig0024531:28209-28228 | None:intergenic | 45.0% | |
CCTCACCAGTTATTGCTCAT+TGG | - | tig0024531:28206-28225 | Msa1417930:CDS | 45.0% | |
ACCAAGTCCCAGATGTTCAA+AGG | + | tig0024531:28272-28291 | None:intergenic | 45.0% | |
GCTGTTGTTGTGTGTGTATC+TGG | - | tig0024531:28293-28312 | Msa1417930:CDS | 45.0% | |
TGATCCTTGAGAGTGGTTTG+TGG | - | tig0024531:28381-28400 | Msa1417930:CDS | 45.0% | |
AGTACCACAAACCACTCTCA+AGG | + | tig0024531:28388-28407 | None:intergenic | 45.0% | |
TGGTGGGGACTTGTAGTATT+TGG | - | tig0024531:28446-28465 | Msa1417930:CDS | 45.0% | |
GGGGACTTGTAGTATTTGGT+TGG | - | tig0024531:28450-28469 | Msa1417930:CDS | 45.0% | |
GGGTTATGTGACCAAACTTG+TGG | - | tig0024531:28526-28545 | Msa1417930:CDS | 45.0% | |
!! | AGAAATCTCACGAAGGCATC+GGG | + | tig0024531:28976-28995 | None:intergenic | 45.0% |
! | GAGAAATCTCACGAAGGCAT+CGG | + | tig0024531:28977-28996 | None:intergenic | 45.0% |
TGGGAAAATTTGCCTTGTCC+CGG | - | tig0024531:29060-29079 | Msa1417930:CDS | 45.0% | |
AAGGTAGAGAGTTCAAAGCC+GGG | + | tig0024531:29081-29100 | None:intergenic | 45.0% | |
CAAGGTAGAGAGTTCAAAGC+CGG | + | tig0024531:29082-29101 | None:intergenic | 45.0% | |
CACAGCGTTCTTCAAATTGC+TGG | + | tig0024531:27653-27672 | None:intergenic | 45.0% | |
GAACGCTGTGATAGCATTCT+TGG | - | tig0024531:27663-27682 | Msa1417930:three_prime_UTR | 45.0% | |
TAGAAGAGAATGGAGGGAAG+AGG | + | tig0024531:27691-27710 | None:intergenic | 45.0% | |
GAGAGGTAGAAGAGAATGGA+GGG | + | tig0024531:27697-27716 | None:intergenic | 45.0% | |
GAACGAGAGGTAGAAGAGAA+TGG | + | tig0024531:27701-27720 | None:intergenic | 45.0% | |
GGAGATTGACTAATAGGAGG+GGG | + | tig0024531:27759-27778 | None:intergenic | 45.0% | |
TTAGAGCGATGAGCCAAAAG+AGG | + | tig0024531:27804-27823 | None:intergenic | 45.0% | |
TCTAATCCAATCCAGCCACT+GGG | - | tig0024531:27819-27838 | Msa1417930:three_prime_UTR | 45.0% | |
!! | AAGGGTGGGCTGCATAATAA+TGG | + | tig0024531:27995-28014 | None:intergenic | 45.0% |
TTATTATGCAGCCCACCCTT+TGG | - | tig0024531:27995-28014 | Msa1417930:three_prime_UTR | 45.0% | |
ATCATAGTGAGCCAAAGGGT+GGG | + | tig0024531:28009-28028 | None:intergenic | 45.0% | |
AATCATAGTGAGCCAAAGGG+TGG | + | tig0024531:28010-28029 | None:intergenic | 45.0% | |
! | GGATAGTGATCCTGTTGACT+TGG | - | tig0024531:28042-28061 | Msa1417930:three_prime_UTR | 45.0% |
! | TCTCTCGTCTGAAGTAGTTG+TGG | + | tig0024531:28088-28107 | None:intergenic | 45.0% |
ACTACTTCAGACGAGAGAAG+TGG | - | tig0024531:28090-28109 | Msa1417930:CDS | 45.0% | |
AGGTAGGTAGATGGAGAAGA+AGG | + | tig0024531:28189-28208 | None:intergenic | 45.0% | |
TAACTGGTGAGGTAGGTAGA+TGG | + | tig0024531:28198-28217 | None:intergenic | 45.0% | |
TGAGCAATAACTGGTGAGGT+AGG | + | tig0024531:28205-28224 | None:intergenic | 45.0% | |
CCAATGAGCAATAACTGGTG+AGG | + | tig0024531:28209-28228 | None:intergenic | 45.0% | |
CCTCACCAGTTATTGCTCAT+TGG | - | tig0024531:28206-28225 | Msa1417930:CDS | 45.0% | |
ACCAAGTCCCAGATGTTCAA+AGG | + | tig0024531:28272-28291 | None:intergenic | 45.0% | |
GCTGTTGTTGTGTGTGTATC+TGG | - | tig0024531:28293-28312 | Msa1417930:CDS | 45.0% | |
TGATCCTTGAGAGTGGTTTG+TGG | - | tig0024531:28381-28400 | Msa1417930:CDS | 45.0% | |
AGTACCACAAACCACTCTCA+AGG | + | tig0024531:28388-28407 | None:intergenic | 45.0% | |
TGGTGGGGACTTGTAGTATT+TGG | - | tig0024531:28446-28465 | Msa1417930:CDS | 45.0% | |
GGGGACTTGTAGTATTTGGT+TGG | - | tig0024531:28450-28469 | Msa1417930:CDS | 45.0% | |
GGGTTATGTGACCAAACTTG+TGG | - | tig0024531:28526-28545 | Msa1417930:CDS | 45.0% | |
!! | AGAAATCTCACGAAGGCATC+GGG | + | tig0024531:28976-28995 | None:intergenic | 45.0% |
! | GAGAAATCTCACGAAGGCAT+CGG | + | tig0024531:28977-28996 | None:intergenic | 45.0% |
TGGGAAAATTTGCCTTGTCC+CGG | - | tig0024531:29060-29079 | Msa1417930:CDS | 45.0% | |
AAGGTAGAGAGTTCAAAGCC+GGG | + | tig0024531:29081-29100 | None:intergenic | 45.0% | |
CAAGGTAGAGAGTTCAAAGC+CGG | + | tig0024531:29082-29101 | None:intergenic | 45.0% | |
CGAGAGGTAGAAGAGAATGG+AGG | + | tig0024531:27698-27717 | None:intergenic | 50.0% | |
GATTGACTAATAGGAGGGGG+TGG | + | tig0024531:27756-27775 | None:intergenic | 50.0% | |
CTCTAATCCAATCCAGCCAC+TGG | - | tig0024531:27818-27837 | Msa1417930:three_prime_UTR | 50.0% | |
!! | TGATCCTGTTGACTTGGGTG+TGG | - | tig0024531:28048-28067 | Msa1417930:exon | 50.0% |
TACTCCACACCCAAGTCAAC+AGG | + | tig0024531:28055-28074 | None:intergenic | 50.0% | |
TCAGACGAGAGAAGTGGCAA+TGG | - | tig0024531:28096-28115 | Msa1417930:CDS | 50.0% | |
CAGACGAGAGAAGTGGCAAT+GGG | - | tig0024531:28097-28116 | Msa1417930:CDS | 50.0% | |
AGACGAGAGAAGTGGCAATG+GGG | - | tig0024531:28098-28117 | Msa1417930:CDS | 50.0% | |
AATGGGGTGCAAGGGAAGAT+TGG | - | tig0024531:28114-28133 | Msa1417930:CDS | 50.0% | |
! | GCCTTTGAACATCTGGGACT+TGG | - | tig0024531:28268-28287 | Msa1417930:CDS | 50.0% |
ACTTTGGTGAGCAGCTATGG+TGG | - | tig0024531:28426-28445 | Msa1417930:CDS | 50.0% | |
TTTGGTTGGAACTTGGGGCA+TGG | - | tig0024531:28464-28483 | Msa1417930:CDS | 50.0% | |
TTGGTTGGAACTTGGGGCAT+GGG | - | tig0024531:28465-28484 | Msa1417930:CDS | 50.0% | |
CGAGAGGTAGAAGAGAATGG+AGG | + | tig0024531:27698-27717 | None:intergenic | 50.0% | |
GATTGACTAATAGGAGGGGG+TGG | + | tig0024531:27756-27775 | None:intergenic | 50.0% | |
CTCTAATCCAATCCAGCCAC+TGG | - | tig0024531:27818-27837 | Msa1417930:three_prime_UTR | 50.0% | |
!! | TGATCCTGTTGACTTGGGTG+TGG | - | tig0024531:28048-28067 | Msa1417930:exon | 50.0% |
TACTCCACACCCAAGTCAAC+AGG | + | tig0024531:28055-28074 | None:intergenic | 50.0% | |
TCAGACGAGAGAAGTGGCAA+TGG | - | tig0024531:28096-28115 | Msa1417930:CDS | 50.0% | |
CAGACGAGAGAAGTGGCAAT+GGG | - | tig0024531:28097-28116 | Msa1417930:CDS | 50.0% | |
AGACGAGAGAAGTGGCAATG+GGG | - | tig0024531:28098-28117 | Msa1417930:CDS | 50.0% | |
AATGGGGTGCAAGGGAAGAT+TGG | - | tig0024531:28114-28133 | Msa1417930:CDS | 50.0% | |
! | GCCTTTGAACATCTGGGACT+TGG | - | tig0024531:28268-28287 | Msa1417930:CDS | 50.0% |
ACTTTGGTGAGCAGCTATGG+TGG | - | tig0024531:28426-28445 | Msa1417930:CDS | 50.0% | |
TTTGGTTGGAACTTGGGGCA+TGG | - | tig0024531:28464-28483 | Msa1417930:CDS | 50.0% | |
TTGGTTGGAACTTGGGGCAT+GGG | - | tig0024531:28465-28484 | Msa1417930:CDS | 50.0% | |
GCGATAGCAGAATGGGTGAG+TGG | + | tig0024531:27734-27753 | None:intergenic | 55.0% | |
AATCCAATCCAGCCACTGGG+TGG | - | tig0024531:27822-27841 | Msa1417930:three_prime_UTR | 55.0% | |
ATCCAATCCAGCCACTGGGT+GGG | - | tig0024531:27823-27842 | Msa1417930:three_prime_UTR | 55.0% | |
AGAAGTGGCAATGGGGTGCA+AGG | - | tig0024531:28105-28124 | Msa1417930:CDS | 55.0% | |
GAAGTGGCAATGGGGTGCAA+GGG | - | tig0024531:28106-28125 | Msa1417930:CDS | 55.0% | |
TTGGTGAGCAGCTATGGTGG+TGG | - | tig0024531:28429-28448 | Msa1417930:CDS | 55.0% | |
TGGTGAGCAGCTATGGTGGT+GGG | - | tig0024531:28430-28449 | Msa1417930:CDS | 55.0% | |
GGGCATGGGTGGACCTTTAT+AGG | - | tig0024531:28479-28498 | Msa1417930:CDS | 55.0% | |
GAGAGTTCAAAGCCGGGACA+AGG | + | tig0024531:29075-29094 | None:intergenic | 55.0% | |
GCGATAGCAGAATGGGTGAG+TGG | + | tig0024531:27734-27753 | None:intergenic | 55.0% | |
AATCCAATCCAGCCACTGGG+TGG | - | tig0024531:27822-27841 | Msa1417930:three_prime_UTR | 55.0% | |
ATCCAATCCAGCCACTGGGT+GGG | - | tig0024531:27823-27842 | Msa1417930:three_prime_UTR | 55.0% | |
AGAAGTGGCAATGGGGTGCA+AGG | - | tig0024531:28105-28124 | Msa1417930:CDS | 55.0% | |
GAAGTGGCAATGGGGTGCAA+GGG | - | tig0024531:28106-28125 | Msa1417930:CDS | 55.0% | |
TTGGTGAGCAGCTATGGTGG+TGG | - | tig0024531:28429-28448 | Msa1417930:CDS | 55.0% | |
TGGTGAGCAGCTATGGTGGT+GGG | - | tig0024531:28430-28449 | Msa1417930:CDS | 55.0% | |
GGGCATGGGTGGACCTTTAT+AGG | - | tig0024531:28479-28498 | Msa1417930:CDS | 55.0% | |
GAGAGTTCAAAGCCGGGACA+AGG | + | tig0024531:29075-29094 | None:intergenic | 55.0% | |
GGGGGTGGCGATAGCAGAAT+GGG | + | tig0024531:27741-27760 | None:intergenic | 60.0% | |
AGGGGGTGGCGATAGCAGAA+TGG | + | tig0024531:27742-27761 | None:intergenic | 60.0% | |
TACCCACCCAGTGGCTGGAT+TGG | + | tig0024531:27828-27847 | None:intergenic | 60.0% | |
AGGTAGGGATACCCACCCAG+TGG | + | tig0024531:27837-27856 | None:intergenic | 60.0% | |
! | GGTGAGCAGCTATGGTGGTG+GGG | - | tig0024531:28431-28450 | Msa1417930:CDS | 60.0% |
GTTGGAACTTGGGGCATGGG+TGG | - | tig0024531:28468-28487 | Msa1417930:CDS | 60.0% | |
GGGGGTGGCGATAGCAGAAT+GGG | + | tig0024531:27741-27760 | None:intergenic | 60.0% | |
AGGGGGTGGCGATAGCAGAA+TGG | + | tig0024531:27742-27761 | None:intergenic | 60.0% | |
TACCCACCCAGTGGCTGGAT+TGG | + | tig0024531:27828-27847 | None:intergenic | 60.0% | |
AGGTAGGGATACCCACCCAG+TGG | + | tig0024531:27837-27856 | None:intergenic | 60.0% | |
! | GGTGAGCAGCTATGGTGGTG+GGG | - | tig0024531:28431-28450 | Msa1417930:CDS | 60.0% |
GTTGGAACTTGGGGCATGGG+TGG | - | tig0024531:28468-28487 | Msa1417930:CDS | 60.0% | |
AGGGATACCCACCCAGTGGC+TGG | + | tig0024531:27833-27852 | None:intergenic | 65.0% | |
AGGGATACCCACCCAGTGGC+TGG | + | tig0024531:27833-27852 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0024531 | gene | 27586 | 29159 | 27586 | ID=Msa1417930;Name=Msa1417930 |
tig0024531 | mRNA | 27586 | 29159 | 27586 | ID=Msa1417930-mRNA-1;Parent=Msa1417930;Name=Msa1417930-mRNA-1;_AED=0.01;_eAED=0.01;_QI=48|1|1|1|1|1|2|477|312 |
tig0024531 | exon | 27586 | 28794 | 27586 | ID=Msa1417930-mRNA-1:exon:144;Parent=Msa1417930-mRNA-1 |
tig0024531 | exon | 28905 | 29159 | 28905 | ID=Msa1417930-mRNA-1:exon:143;Parent=Msa1417930-mRNA-1 |
tig0024531 | five_prime_UTR | 29112 | 29159 | 29112 | ID=Msa1417930-mRNA-1:five_prime_utr;Parent=Msa1417930-mRNA-1 |
tig0024531 | CDS | 28905 | 29111 | 28905 | ID=Msa1417930-mRNA-1:cds;Parent=Msa1417930-mRNA-1 |
tig0024531 | CDS | 28063 | 28794 | 28063 | ID=Msa1417930-mRNA-1:cds;Parent=Msa1417930-mRNA-1 |
tig0024531 | three_prime_UTR | 27586 | 28062 | 27586 | ID=Msa1417930-mRNA-1:three_prime_utr;Parent=Msa1417930-mRNA-1 |
Gene Sequence |
Protein sequence |