AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1116740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116740 MtrunA17_Chr7g0259151 82.394 142 25 0 1 142 1 142 1.73e-80 233
Msa1116740 MtrunA17_Chr7g0268831 79.528 127 26 0 1 127 1 127 1.13e-69 206
Msa1116740 MtrunA17_Chr7g0273351 80.645 124 23 1 4 127 2 124 4.42e-67 199
Msa1116740 MtrunA17_Chr7g0273331 79.675 123 25 0 5 127 58 180 9.65e-66 198
Msa1116740 MtrunA17_Chr2g0319191 76.471 119 24 1 13 127 3 121 3.09e-60 182
Msa1116740 MtrunA17_Chr2g0319181 76.860 121 20 2 13 127 3 121 3.97e-60 182
Msa1116740 MtrunA17_Chr7g0272611 71.552 116 33 0 12 127 16 131 1.70e-53 165
Msa1116740 MtrunA17_Chr2g0327951 73.832 107 28 0 21 127 58 164 6.87e-53 165
Msa1116740 MtrunA17_Chr7g0273341 72.500 120 22 2 8 127 44 152 1.28e-52 164
Msa1116740 MtrunA17_Chr4g0031041 73.832 107 28 0 21 127 17 123 1.92e-52 163
Msa1116740 MtrunA17_Chr4g0035621 74.528 106 27 0 22 127 24 129 2.29e-52 163
Msa1116740 MtrunA17_Chr4g0031651 73.585 106 28 0 22 127 24 129 6.31e-52 161
Msa1116740 MtrunA17_Chr4g0031001 73.585 106 28 0 22 127 24 129 7.04e-52 161
Msa1116740 MtrunA17_Chr4g0032301 73.585 106 28 0 22 127 24 129 1.07e-51 161
Msa1116740 MtrunA17_Chr2g0327931 73.585 106 28 0 22 127 23 128 1.38e-51 161
Msa1116740 MtrunA17_Chr8g0379311 73.585 106 28 0 22 127 24 129 1.82e-51 160
Msa1116740 MtrunA17_Chr6g0449661 59.813 107 34 2 22 127 85 183 6.05e-35 120
Msa1116740 MtrunA17_Chr3g0119971 60.377 106 33 2 23 127 81 178 8.16e-35 119
Msa1116740 MtrunA17_Chr4g0031031 77.027 74 17 0 43 116 10 83 2.03e-34 116
Msa1116740 MtrunA17_Chr1g0148961 56.757 111 46 2 21 130 25 134 6.41e-34 115
Msa1116740 MtrunA17_Chr1g0148951 56.757 111 46 2 21 130 25 134 6.41e-34 115
Msa1116740 MtrunA17_Chr1g0211651 50.758 132 62 3 1 130 1 131 4.36e-33 113
Msa1116740 MtrunA17_Chr1g0184901 51.515 132 51 4 11 130 4 134 1.57e-32 112
Msa1116740 MtrunA17_Chr4g0024701 46.789 109 38 2 22 130 26 114 2.72e-22 85.5
Msa1116740 MtrunA17_Chr4g0000531 73.333 45 12 0 83 127 5 49 6.85e-18 72.8
Msa1116740 MtrunA17_Chr1g0183701 52.174 69 25 1 65 125 30 98 3.04e-16 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116740 AT1G54690.1 86.555 119 16 0 1 119 1 119 2.87e-70 208
Msa1116740 AT1G08880.1 84.874 119 18 0 1 119 1 119 2.36e-69 206
Msa1116740 AT4G27230.2 77.311 119 23 1 13 127 3 121 1.57e-60 183
Msa1116740 AT4G27230.1 77.311 119 23 1 13 127 3 121 1.57e-60 183
Msa1116740 AT5G54640.1 76.471 119 24 1 13 127 3 121 7.71e-60 181
Msa1116740 AT3G20670.1 76.471 119 24 1 13 127 3 121 6.30e-59 179
Msa1116740 AT1G51060.1 74.790 119 26 1 13 127 3 121 7.19e-59 179
Msa1116740 AT5G59870.1 68.992 129 34 3 4 127 2 129 3.06e-55 170
Msa1116740 AT5G02560.1 72.897 107 29 0 21 127 23 129 2.84e-51 160
Msa1116740 AT5G27670.1 70.248 121 32 1 4 120 3 123 1.68e-50 158
Msa1116740 AT5G02560.2 59.542 131 29 1 21 127 23 153 1.45e-44 144
Msa1116740 AT2G38810.1 58.333 108 41 3 21 126 27 132 3.21e-33 114
Msa1116740 AT2G38810.4 58.333 108 41 3 21 126 27 132 3.21e-33 114
Msa1116740 AT2G38810.3 58.333 108 41 3 21 126 27 132 3.21e-33 114
Msa1116740 AT2G38810.2 58.333 108 41 3 21 126 27 132 3.21e-33 114
Msa1116740 AT1G52740.1 55.046 109 47 2 23 130 27 134 1.77e-32 112
Msa1116740 AT3G54560.1 55.455 110 45 3 23 130 29 136 1.38e-31 110
Msa1116740 AT3G54560.2 55.455 110 45 3 23 130 29 136 1.38e-31 110
Msa1116740 AT4G13570.1 48.913 92 43 3 30 119 28 117 6.48e-19 77.4
Msa1116740 AT4G13570.2 48.352 91 43 3 31 119 35 123 5.65e-18 75.1

Find 67 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAACGGACTTGGTGGTTT+TGG 0.182132 7_3:+64530047 None:intergenic
TTCTTTCCAGCCACCTTCTT+TGG 0.190245 7_3:+64529637 None:intergenic
TTTGCCCCTTCCACCTTTCT+TGG 0.205738 7_3:+64530071 None:intergenic
TATTCTCAACGTGTTGGATA+TGG 0.311816 7_3:-64529958 Msa1116740:CDS
CGATGGGGCCAACGGGGAAC+TGG 0.327716 7_3:+64530004 None:intergenic
GCTGGAAAGAAGGGAGAAAT+TGG 0.339055 7_3:-64529625 Msa1116740:CDS
TGTTGGATCGTTAAAATGTT+AGG 0.342558 7_3:-64529560 Msa1116740:three_prime_UTR
CCTTCTTTGGCAACAAAGTC+TGG 0.343615 7_3:+64529650 None:intergenic
AAGCGAGCGATGGGGCCAAC+GGG 0.353402 7_3:+64529997 None:intergenic
TAGGGGTTTAATGTAGCATT+TGG 0.358115 7_3:-64529583 Msa1116740:exon
ACATCAAAGTACACTCTCTT+TGG 0.365869 7_3:+64530429 None:intergenic
AGAACGGCGGAGAGGTAAAC+AGG 0.367840 7_3:+64529931 None:intergenic
CAACAAAGTCTGGTTATGTT+AGG 0.375555 7_3:+64529660 None:intergenic
GTTTCGTTCTTGATTCTGAT+TGG 0.382483 7_3:+64530210 None:intergenic
GCTTGATCTGGAAACGGACT+TGG 0.398049 7_3:+64530038 None:intergenic
GTTGGCTTTGGTTTATATAG+AGG 0.398990 7_3:+64530188 None:intergenic
GAGAATAACGACCTGCTTTG+AGG 0.406903 7_3:+64529974 None:intergenic
TGAAGAATTGAGCAAATTGC+TGG 0.411696 7_3:-64529715 Msa1116740:CDS
GGCTTTGCTTGATCTGGAAA+CGG 0.440381 7_3:+64530032 None:intergenic
GAGACCGGCTTTGCTTGATC+TGG 0.448607 7_3:+64530026 None:intergenic
AAGTTTAATTGAGTTGGCTT+TGG 0.455144 7_3:+64530176 None:intergenic
CCAGACTTTGTTGCCAAAGA+AGG 0.455852 7_3:-64529650 Msa1116740:CDS
CGTTCCTCACAGCTAGTTGA+AGG 0.456555 7_3:+64529739 None:intergenic
GAAGCGAGCGATGGGGCCAA+CGG 0.459170 7_3:+64529996 None:intergenic
TTTAATGTAGCATTTGGTGT+TGG 0.463658 7_3:-64529577 Msa1116740:exon
AAAGAAGGTGGCTGGAAAGA+AGG 0.474142 7_3:-64529635 Msa1116740:CDS
TGCTTTGAGGAAGCGAGCGA+TGG 0.478941 7_3:+64529987 None:intergenic
GATTAGGTTAGGATTAATGT+TGG 0.482420 7_3:-64529483 Msa1116740:three_prime_UTR
GCTTTGAGGAAGCGAGCGAT+GGG 0.486043 7_3:+64529988 None:intergenic
TTGTTGCCAAAGAAGGTGGC+TGG 0.488184 7_3:-64529643 Msa1116740:CDS
AGAAATTGGATCTGTTAGTC+AGG 0.492158 7_3:-64529611 Msa1116740:CDS
GGACATGTGACTATTGCTAA+TGG 0.499589 7_3:-64529693 Msa1116740:CDS
GCCAACGGGGAACTGGAGAC+CGG 0.500325 7_3:+64530011 None:intergenic
ATCGCTCGCTTCCTCAAAGC+AGG 0.500822 7_3:-64529985 Msa1116740:CDS
GTTGTGAAGTTTAATTGAGT+TGG 0.512047 7_3:+64530170 None:intergenic
TGATTCTGATTGGCTTAGAG+AGG 0.517754 7_3:+64530220 None:intergenic
TGATCTGGAAACGGACTTGG+TGG 0.521894 7_3:+64530041 None:intergenic
CACGCCAGCGAAACTTGAAA+AGG 0.523341 7_3:-64530318 Msa1116740:five_prime_UTR
CAACAACCAAGAAAGGTGGA+AGG 0.537155 7_3:-64530077 Msa1116740:CDS
ACAGCTAGTTGAAGGTGCCT+TGG 0.544219 7_3:+64529747 None:intergenic
GGTCGTTATTCTCAACGTGT+TGG 0.551691 7_3:-64529964 Msa1116740:CDS
AACAACCAAGAAAGGTGGAA+GGG 0.559634 7_3:-64530076 Msa1116740:CDS
GCAACAGCAACAACCAAGAA+AGG 0.559755 7_3:-64530084 Msa1116740:CDS
ACAACCAAGAAAGGTGGAAG+GGG 0.560784 7_3:-64530075 Msa1116740:CDS
GCCGGTCTCCAGTTCCCCGT+TGG 0.565477 7_3:-64530012 Msa1116740:CDS
GACTTTGTTGCCAAAGAAGG+TGG 0.566455 7_3:-64529647 Msa1116740:CDS
AAGAAGGTGGCTGGAAAGAA+GGG 0.567889 7_3:-64529634 Msa1116740:CDS
GTTTCCAGATCAAGCAAAGC+CGG 0.580006 7_3:-64530030 Msa1116740:CDS
GGCGCAGAGGTATTCAAGAA+CGG 0.601101 7_3:+64529915 None:intergenic
GAAGAATTGAGCAAATTGCT+GGG 0.610291 7_3:-64529714 Msa1116740:CDS
CAAGGGATAACAAGAAGACA+AGG 0.618509 7_3:-64529776 Msa1116740:CDS
AGCGAGCGATGGGGCCAACG+GGG 0.629125 7_3:+64529998 None:intergenic
AATTGGCTGGTAATGCTGCA+AGG 0.630027 7_3:-64529794 Msa1116740:CDS
TGTTTATACTAGCAATAGAG+AGG 0.630482 7_3:-64530409 Msa1116740:five_prime_UTR
ATTGGCTGGTAATGCTGCAA+GGG 0.637236 7_3:-64529793 Msa1116740:CDS
ACAGCAACAACCAAGAAAGG+TGG 0.649404 7_3:-64530081 Msa1116740:CDS
TCTTGAATACCTCTGCGCCG+AGG 0.661590 7_3:-64529911 Msa1116740:intron
CATGTGACTATTGCTAATGG+TGG 0.673088 7_3:-64529690 Msa1116740:CDS
CTTTGAGGAAGCGAGCGATG+GGG 0.676529 7_3:+64529989 None:intergenic
GAACGGCGGAGAGGTAAACA+GGG 0.687773 7_3:+64529932 None:intergenic
GGTATTCAAGAACGGCGGAG+AGG 0.689904 7_3:+64529923 None:intergenic
GGCACCTTCAACTAGCTGTG+AGG 0.707498 7_3:-64529743 Msa1116740:CDS
AGAAGACAAGGATTGTACCA+AGG 0.714311 7_3:-64529764 Msa1116740:CDS
TGGCTTAGAGAGGTTTCACG+CGG 0.717037 7_3:+64530230 None:intergenic
TTTCACGCGGATCGCCAACG+TGG 0.727732 7_3:+64530243 None:intergenic
GCAGAGGTATTCAAGAACGG+CGG 0.737402 7_3:+64529918 None:intergenic
AACGGCGGAGAGGTAAACAG+GGG 0.752615 7_3:+64529933 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACCGTTTATATTAATTTT+TGG - chr7_3:64530194-64530213 Msa1116740:five_prime_UTR 15.0%
!!! AACCGTTTATATTAATTTTT+GGG - chr7_3:64530195-64530214 Msa1116740:five_prime_UTR 15.0%
!!! TAACCGTTTATATTAATTTT+TGG - chr7_3:64530194-64530213 Msa1116740:five_prime_UTR 15.0%
!!! AACCGTTTATATTAATTTTT+GGG - chr7_3:64530195-64530214 Msa1116740:five_prime_UTR 15.0%
!! TTCAAAACAGAAAAAAACAA+TGG - chr7_3:64529911-64529930 Msa1116740:intron 20.0%
!! CACCCAAAAATTAATATAAA+CGG + chr7_3:64530200-64530219 None:intergenic 20.0%
!! TTCAAAACAGAAAAAAACAA+TGG - chr7_3:64529911-64529930 Msa1116740:intron 20.0%
!! CACCCAAAAATTAATATAAA+CGG + chr7_3:64530200-64530219 None:intergenic 20.0%
! AAAGCAAAGAAAAATTACCT+CGG + chr7_3:64530135-64530154 None:intergenic 25.0%
!!! CGTTTATATTAATTTTTGGG+TGG - chr7_3:64530198-64530217 Msa1116740:five_prime_UTR 25.0%
!!! ATATTAATTTTTGGGTGGTT+AGG - chr7_3:64530203-64530222 Msa1116740:five_prime_UTR 25.0%
!!! TCTTATTTTGAGATTAGGTT+AGG - chr7_3:64530532-64530551 Msa1116740:five_prime_UTR 25.0%
! AAAGCAAAGAAAAATTACCT+CGG + chr7_3:64530135-64530154 None:intergenic 25.0%
!!! CGTTTATATTAATTTTTGGG+TGG - chr7_3:64530198-64530217 Msa1116740:five_prime_UTR 25.0%
!!! ATATTAATTTTTGGGTGGTT+AGG - chr7_3:64530203-64530222 Msa1116740:five_prime_UTR 25.0%
!!! TCTTATTTTGAGATTAGGTT+AGG - chr7_3:64530532-64530551 Msa1116740:five_prime_UTR 25.0%
TGTTTATACTAGCAATAGAG+AGG - chr7_3:64529617-64529636 Msa1116740:CDS 30.0%
!!! AAACAAGTTTGAGTTTTGAG+CGG + chr7_3:64529756-64529775 None:intergenic 30.0%
!!! CAAAACTCAAACTTGTTTTG+CGG - chr7_3:64529758-64529777 Msa1116740:CDS 30.0%
!! AAGTTTAATTGAGTTGGCTT+TGG + chr7_3:64529853-64529872 None:intergenic 30.0%
GTTGTGAAGTTTAATTGAGT+TGG + chr7_3:64529859-64529878 None:intergenic 30.0%
!! TTTAATGTAGCATTTGGTGT+TGG - chr7_3:64530449-64530468 Msa1116740:five_prime_UTR 30.0%
TGTTGGATCGTTAAAATGTT+AGG - chr7_3:64530466-64530485 Msa1116740:five_prime_UTR 30.0%
!!! CGTGTTCTTATTTTGAGATT+AGG - chr7_3:64530527-64530546 Msa1116740:five_prime_UTR 30.0%
GATTAGGTTAGGATTAATGT+TGG - chr7_3:64530543-64530562 Msa1116740:five_prime_UTR 30.0%
TGTTTATACTAGCAATAGAG+AGG - chr7_3:64529617-64529636 Msa1116740:CDS 30.0%
!!! AAACAAGTTTGAGTTTTGAG+CGG + chr7_3:64529756-64529775 None:intergenic 30.0%
!!! CAAAACTCAAACTTGTTTTG+CGG - chr7_3:64529758-64529777 Msa1116740:CDS 30.0%
!! AAGTTTAATTGAGTTGGCTT+TGG + chr7_3:64529853-64529872 None:intergenic 30.0%
GTTGTGAAGTTTAATTGAGT+TGG + chr7_3:64529859-64529878 None:intergenic 30.0%
!! TTTAATGTAGCATTTGGTGT+TGG - chr7_3:64530449-64530468 Msa1116740:five_prime_UTR 30.0%
TGTTGGATCGTTAAAATGTT+AGG - chr7_3:64530466-64530485 Msa1116740:five_prime_UTR 30.0%
!!! CGTGTTCTTATTTTGAGATT+AGG - chr7_3:64530527-64530546 Msa1116740:five_prime_UTR 30.0%
GATTAGGTTAGGATTAATGT+TGG - chr7_3:64530543-64530562 Msa1116740:five_prime_UTR 30.0%
ACATCAAAGTACACTCTCTT+TGG + chr7_3:64529600-64529619 None:intergenic 35.0%
!!! AACAAGTTTGAGTTTTGAGC+GGG + chr7_3:64529755-64529774 None:intergenic 35.0%
GTTTCGTTCTTGATTCTGAT+TGG + chr7_3:64529819-64529838 None:intergenic 35.0%
!! GTTGGCTTTGGTTTATATAG+AGG + chr7_3:64529841-64529860 None:intergenic 35.0%
TATTCTCAACGTGTTGGATA+TGG - chr7_3:64530068-64530087 Msa1116740:CDS 35.0%
CAAACTCAAAATAACACTCG+AGG + chr7_3:64530161-64530180 None:intergenic 35.0%
!!! ATTTTTGGGTGGTTAGGTTT+TGG - chr7_3:64530209-64530228 Msa1116740:five_prime_UTR 35.0%
TGAAGAATTGAGCAAATTGC+TGG - chr7_3:64530311-64530330 Msa1116740:five_prime_UTR 35.0%
GAAGAATTGAGCAAATTGCT+GGG - chr7_3:64530312-64530331 Msa1116740:five_prime_UTR 35.0%
CAACAAAGTCTGGTTATGTT+AGG + chr7_3:64530369-64530388 None:intergenic 35.0%
AGAAATTGGATCTGTTAGTC+AGG - chr7_3:64530415-64530434 Msa1116740:five_prime_UTR 35.0%
! ATCTGTTAGTCAGGAGTTTT+AGG - chr7_3:64530424-64530443 Msa1116740:five_prime_UTR 35.0%
! TCTGTTAGTCAGGAGTTTTA+GGG - chr7_3:64530425-64530444 Msa1116740:five_prime_UTR 35.0%
TAGGGGTTTAATGTAGCATT+TGG - chr7_3:64530443-64530462 Msa1116740:five_prime_UTR 35.0%
ACATCAAAGTACACTCTCTT+TGG + chr7_3:64529600-64529619 None:intergenic 35.0%
!!! AACAAGTTTGAGTTTTGAGC+GGG + chr7_3:64529755-64529774 None:intergenic 35.0%
GTTTCGTTCTTGATTCTGAT+TGG + chr7_3:64529819-64529838 None:intergenic 35.0%
!! GTTGGCTTTGGTTTATATAG+AGG + chr7_3:64529841-64529860 None:intergenic 35.0%
TATTCTCAACGTGTTGGATA+TGG - chr7_3:64530068-64530087 Msa1116740:CDS 35.0%
CAAACTCAAAATAACACTCG+AGG + chr7_3:64530161-64530180 None:intergenic 35.0%
!!! ATTTTTGGGTGGTTAGGTTT+TGG - chr7_3:64530209-64530228 Msa1116740:five_prime_UTR 35.0%
TGAAGAATTGAGCAAATTGC+TGG - chr7_3:64530311-64530330 Msa1116740:five_prime_UTR 35.0%
GAAGAATTGAGCAAATTGCT+GGG - chr7_3:64530312-64530331 Msa1116740:five_prime_UTR 35.0%
CAACAAAGTCTGGTTATGTT+AGG + chr7_3:64530369-64530388 None:intergenic 35.0%
AGAAATTGGATCTGTTAGTC+AGG - chr7_3:64530415-64530434 Msa1116740:five_prime_UTR 35.0%
! ATCTGTTAGTCAGGAGTTTT+AGG - chr7_3:64530424-64530443 Msa1116740:five_prime_UTR 35.0%
! TCTGTTAGTCAGGAGTTTTA+GGG - chr7_3:64530425-64530444 Msa1116740:five_prime_UTR 35.0%
TAGGGGTTTAATGTAGCATT+TGG - chr7_3:64530443-64530462 Msa1116740:five_prime_UTR 35.0%
!! TTTTGATTGCCGCTCAAAAG+CGG - chr7_3:64529651-64529670 Msa1116740:CDS 40.0%
!! TGATTCTGATTGGCTTAGAG+AGG + chr7_3:64529809-64529828 None:intergenic 40.0%
AACAACCAAGAAAGGTGGAA+GGG - chr7_3:64529950-64529969 Msa1116740:CDS 40.0%
CAAGGGATAACAAGAAGACA+AGG - chr7_3:64530250-64530269 Msa1116740:five_prime_UTR 40.0%
AGAAGACAAGGATTGTACCA+AGG - chr7_3:64530262-64530281 Msa1116740:five_prime_UTR 40.0%
GGACATGTGACTATTGCTAA+TGG - chr7_3:64530333-64530352 Msa1116740:five_prime_UTR 40.0%
CATGTGACTATTGCTAATGG+TGG - chr7_3:64530336-64530355 Msa1116740:five_prime_UTR 40.0%
!! CTGTTAGTCAGGAGTTTTAG+GGG - chr7_3:64530426-64530445 Msa1116740:five_prime_UTR 40.0%
!! TTTTGATTGCCGCTCAAAAG+CGG - chr7_3:64529651-64529670 Msa1116740:CDS 40.0%
!! TGATTCTGATTGGCTTAGAG+AGG + chr7_3:64529809-64529828 None:intergenic 40.0%
AACAACCAAGAAAGGTGGAA+GGG - chr7_3:64529950-64529969 Msa1116740:CDS 40.0%
CAAGGGATAACAAGAAGACA+AGG - chr7_3:64530250-64530269 Msa1116740:five_prime_UTR 40.0%
AGAAGACAAGGATTGTACCA+AGG - chr7_3:64530262-64530281 Msa1116740:five_prime_UTR 40.0%
GGACATGTGACTATTGCTAA+TGG - chr7_3:64530333-64530352 Msa1116740:five_prime_UTR 40.0%
CATGTGACTATTGCTAATGG+TGG - chr7_3:64530336-64530355 Msa1116740:five_prime_UTR 40.0%
!! CTGTTAGTCAGGAGTTTTAG+GGG - chr7_3:64530426-64530445 Msa1116740:five_prime_UTR 40.0%
!! TTCGTGAATCCGCTTTTGAG+CGG + chr7_3:64529663-64529682 None:intergenic 45.0%
GCAACAGCAACAACCAAGAA+AGG - chr7_3:64529942-64529961 Msa1116740:CDS 45.0%
ACAGCAACAACCAAGAAAGG+TGG - chr7_3:64529945-64529964 Msa1116740:CDS 45.0%
CAACAACCAAGAAAGGTGGA+AGG - chr7_3:64529949-64529968 Msa1116740:CDS 45.0%
ACAACCAAGAAAGGTGGAAG+GGG - chr7_3:64529951-64529970 Msa1116740:CDS 45.0%
!!! GAAACGGACTTGGTGGTTTT+GGG + chr7_3:64529981-64530000 None:intergenic 45.0%
GGCTTTGCTTGATCTGGAAA+CGG + chr7_3:64529997-64530016 None:intergenic 45.0%
GTTTCCAGATCAAGCAAAGC+CGG - chr7_3:64529996-64530015 Msa1116740:CDS 45.0%
GAGAATAACGACCTGCTTTG+AGG + chr7_3:64530055-64530074 None:intergenic 45.0%
GGTCGTTATTCTCAACGTGT+TGG - chr7_3:64530062-64530081 Msa1116740:CDS 45.0%
!!! GGGTGGTTAGGTTTTGGAAT+TGG - chr7_3:64530215-64530234 Msa1116740:five_prime_UTR 45.0%
!!! GGTTAGGTTTTGGAATTGGC+TGG - chr7_3:64530219-64530238 Msa1116740:five_prime_UTR 45.0%
! AATTGGCTGGTAATGCTGCA+AGG - chr7_3:64530232-64530251 Msa1116740:five_prime_UTR 45.0%
! ATTGGCTGGTAATGCTGCAA+GGG - chr7_3:64530233-64530252 Msa1116740:five_prime_UTR 45.0%
CCTTCTTTGGCAACAAAGTC+TGG + chr7_3:64530379-64530398 None:intergenic 45.0%
CCAGACTTTGTTGCCAAAGA+AGG - chr7_3:64530376-64530395 Msa1116740:five_prime_UTR 45.0%
GACTTTGTTGCCAAAGAAGG+TGG - chr7_3:64530379-64530398 Msa1116740:five_prime_UTR 45.0%
TTCTTTCCAGCCACCTTCTT+TGG + chr7_3:64530392-64530411 None:intergenic 45.0%
AAAGAAGGTGGCTGGAAAGA+AGG - chr7_3:64530391-64530410 Msa1116740:five_prime_UTR 45.0%
AAGAAGGTGGCTGGAAAGAA+GGG - chr7_3:64530392-64530411 Msa1116740:five_prime_UTR 45.0%
GCTGGAAAGAAGGGAGAAAT+TGG - chr7_3:64530401-64530420 Msa1116740:five_prime_UTR 45.0%
!! TTCGTGAATCCGCTTTTGAG+CGG + chr7_3:64529663-64529682 None:intergenic 45.0%
GCAACAGCAACAACCAAGAA+AGG - chr7_3:64529942-64529961 Msa1116740:CDS 45.0%
ACAGCAACAACCAAGAAAGG+TGG - chr7_3:64529945-64529964 Msa1116740:CDS 45.0%
CAACAACCAAGAAAGGTGGA+AGG - chr7_3:64529949-64529968 Msa1116740:CDS 45.0%
ACAACCAAGAAAGGTGGAAG+GGG - chr7_3:64529951-64529970 Msa1116740:CDS 45.0%
!!! GAAACGGACTTGGTGGTTTT+GGG + chr7_3:64529981-64530000 None:intergenic 45.0%
GGCTTTGCTTGATCTGGAAA+CGG + chr7_3:64529997-64530016 None:intergenic 45.0%
GTTTCCAGATCAAGCAAAGC+CGG - chr7_3:64529996-64530015 Msa1116740:CDS 45.0%
GAGAATAACGACCTGCTTTG+AGG + chr7_3:64530055-64530074 None:intergenic 45.0%
GGTCGTTATTCTCAACGTGT+TGG - chr7_3:64530062-64530081 Msa1116740:CDS 45.0%
!!! GGGTGGTTAGGTTTTGGAAT+TGG - chr7_3:64530215-64530234 Msa1116740:five_prime_UTR 45.0%
!!! GGTTAGGTTTTGGAATTGGC+TGG - chr7_3:64530219-64530238 Msa1116740:five_prime_UTR 45.0%
! AATTGGCTGGTAATGCTGCA+AGG - chr7_3:64530232-64530251 Msa1116740:five_prime_UTR 45.0%
! ATTGGCTGGTAATGCTGCAA+GGG - chr7_3:64530233-64530252 Msa1116740:five_prime_UTR 45.0%
CCTTCTTTGGCAACAAAGTC+TGG + chr7_3:64530379-64530398 None:intergenic 45.0%
CCAGACTTTGTTGCCAAAGA+AGG - chr7_3:64530376-64530395 Msa1116740:five_prime_UTR 45.0%
GACTTTGTTGCCAAAGAAGG+TGG - chr7_3:64530379-64530398 Msa1116740:five_prime_UTR 45.0%
TTCTTTCCAGCCACCTTCTT+TGG + chr7_3:64530392-64530411 None:intergenic 45.0%
AAAGAAGGTGGCTGGAAAGA+AGG - chr7_3:64530391-64530410 Msa1116740:five_prime_UTR 45.0%
AAGAAGGTGGCTGGAAAGAA+GGG - chr7_3:64530392-64530411 Msa1116740:five_prime_UTR 45.0%
GCTGGAAAGAAGGGAGAAAT+TGG - chr7_3:64530401-64530420 Msa1116740:five_prime_UTR 45.0%
!!! CTTTTCAAGTTTCGCTGGCG+TGG + chr7_3:64529710-64529729 None:intergenic 50.0%
CACGCCAGCGAAACTTGAAA+AGG - chr7_3:64529708-64529727 Msa1116740:CDS 50.0%
!!! CACGCCTTTTCAAGTTTCGC+TGG + chr7_3:64529715-64529734 None:intergenic 50.0%
TGGCTTAGAGAGGTTTCACG+CGG + chr7_3:64529799-64529818 None:intergenic 50.0%
TTTGCCCCTTCCACCTTTCT+TGG + chr7_3:64529958-64529977 None:intergenic 50.0%
!!! GGAAACGGACTTGGTGGTTT+TGG + chr7_3:64529982-64530001 None:intergenic 50.0%
! TGATCTGGAAACGGACTTGG+TGG + chr7_3:64529988-64530007 None:intergenic 50.0%
! GCTTGATCTGGAAACGGACT+TGG + chr7_3:64529991-64530010 None:intergenic 50.0%
!! GCAGAGGTATTCAAGAACGG+CGG + chr7_3:64530111-64530130 None:intergenic 50.0%
!! GGCGCAGAGGTATTCAAGAA+CGG + chr7_3:64530114-64530133 None:intergenic 50.0%
GAAAAATTACCTCGGCGCAG+AGG + chr7_3:64530127-64530146 None:intergenic 50.0%
!! ACAGCTAGTTGAAGGTGCCT+TGG + chr7_3:64530282-64530301 None:intergenic 50.0%
CGTTCCTCACAGCTAGTTGA+AGG + chr7_3:64530290-64530309 None:intergenic 50.0%
TTGTTGCCAAAGAAGGTGGC+TGG - chr7_3:64530383-64530402 Msa1116740:five_prime_UTR 50.0%
!!! CTTTTCAAGTTTCGCTGGCG+TGG + chr7_3:64529710-64529729 None:intergenic 50.0%
CACGCCAGCGAAACTTGAAA+AGG - chr7_3:64529708-64529727 Msa1116740:CDS 50.0%
!!! CACGCCTTTTCAAGTTTCGC+TGG + chr7_3:64529715-64529734 None:intergenic 50.0%
TGGCTTAGAGAGGTTTCACG+CGG + chr7_3:64529799-64529818 None:intergenic 50.0%
TTTGCCCCTTCCACCTTTCT+TGG + chr7_3:64529958-64529977 None:intergenic 50.0%
!!! GGAAACGGACTTGGTGGTTT+TGG + chr7_3:64529982-64530001 None:intergenic 50.0%
! TGATCTGGAAACGGACTTGG+TGG + chr7_3:64529988-64530007 None:intergenic 50.0%
! GCTTGATCTGGAAACGGACT+TGG + chr7_3:64529991-64530010 None:intergenic 50.0%
!! GCAGAGGTATTCAAGAACGG+CGG + chr7_3:64530111-64530130 None:intergenic 50.0%
!! GGCGCAGAGGTATTCAAGAA+CGG + chr7_3:64530114-64530133 None:intergenic 50.0%
GAAAAATTACCTCGGCGCAG+AGG + chr7_3:64530127-64530146 None:intergenic 50.0%
!! ACAGCTAGTTGAAGGTGCCT+TGG + chr7_3:64530282-64530301 None:intergenic 50.0%
CGTTCCTCACAGCTAGTTGA+AGG + chr7_3:64530290-64530309 None:intergenic 50.0%
TTGTTGCCAAAGAAGGTGGC+TGG - chr7_3:64530383-64530402 Msa1116740:five_prime_UTR 50.0%
!!! CTTGTTTTGCGGTGCCACGT+TGG - chr7_3:64529769-64529788 Msa1116740:CDS 55.0%
! GAGACCGGCTTTGCTTGATC+TGG + chr7_3:64530003-64530022 None:intergenic 55.0%
! CTTTGAGGAAGCGAGCGATG+GGG + chr7_3:64530040-64530059 None:intergenic 55.0%
!! GCTTTGAGGAAGCGAGCGAT+GGG + chr7_3:64530041-64530060 None:intergenic 55.0%
!! TGCTTTGAGGAAGCGAGCGA+TGG + chr7_3:64530042-64530061 None:intergenic 55.0%
ATCGCTCGCTTCCTCAAAGC+AGG - chr7_3:64530041-64530060 Msa1116740:CDS 55.0%
AACGGCGGAGAGGTAAACAG+GGG + chr7_3:64530096-64530115 None:intergenic 55.0%
GAACGGCGGAGAGGTAAACA+GGG + chr7_3:64530097-64530116 None:intergenic 55.0%
AGAACGGCGGAGAGGTAAAC+AGG + chr7_3:64530098-64530117 None:intergenic 55.0%
GGTATTCAAGAACGGCGGAG+AGG + chr7_3:64530106-64530125 None:intergenic 55.0%
TCTTGAATACCTCTGCGCCG+AGG - chr7_3:64530115-64530134 Msa1116740:exon 55.0%
GGCACCTTCAACTAGCTGTG+AGG - chr7_3:64530283-64530302 Msa1116740:five_prime_UTR 55.0%
!!! CTTGTTTTGCGGTGCCACGT+TGG - chr7_3:64529769-64529788 Msa1116740:CDS 55.0%
! GAGACCGGCTTTGCTTGATC+TGG + chr7_3:64530003-64530022 None:intergenic 55.0%
! CTTTGAGGAAGCGAGCGATG+GGG + chr7_3:64530040-64530059 None:intergenic 55.0%
!! GCTTTGAGGAAGCGAGCGAT+GGG + chr7_3:64530041-64530060 None:intergenic 55.0%
!! TGCTTTGAGGAAGCGAGCGA+TGG + chr7_3:64530042-64530061 None:intergenic 55.0%
ATCGCTCGCTTCCTCAAAGC+AGG - chr7_3:64530041-64530060 Msa1116740:CDS 55.0%
AACGGCGGAGAGGTAAACAG+GGG + chr7_3:64530096-64530115 None:intergenic 55.0%
GAACGGCGGAGAGGTAAACA+GGG + chr7_3:64530097-64530116 None:intergenic 55.0%
AGAACGGCGGAGAGGTAAAC+AGG + chr7_3:64530098-64530117 None:intergenic 55.0%
GGTATTCAAGAACGGCGGAG+AGG + chr7_3:64530106-64530125 None:intergenic 55.0%
TCTTGAATACCTCTGCGCCG+AGG - chr7_3:64530115-64530134 Msa1116740:exon 55.0%
GGCACCTTCAACTAGCTGTG+AGG - chr7_3:64530283-64530302 Msa1116740:five_prime_UTR 55.0%
TTTCACGCGGATCGCCAACG+TGG + chr7_3:64529786-64529805 None:intergenic 60.0%
TTTCACGCGGATCGCCAACG+TGG + chr7_3:64529786-64529805 None:intergenic 60.0%
GCCAACGGGGAACTGGAGAC+CGG + chr7_3:64530018-64530037 None:intergenic 65.0%
AAGCGAGCGATGGGGCCAAC+GGG + chr7_3:64530032-64530051 None:intergenic 65.0%
GAAGCGAGCGATGGGGCCAA+CGG + chr7_3:64530033-64530052 None:intergenic 65.0%
GCCAACGGGGAACTGGAGAC+CGG + chr7_3:64530018-64530037 None:intergenic 65.0%
AAGCGAGCGATGGGGCCAAC+GGG + chr7_3:64530032-64530051 None:intergenic 65.0%
GAAGCGAGCGATGGGGCCAA+CGG + chr7_3:64530033-64530052 None:intergenic 65.0%
GCCGGTCTCCAGTTCCCCGT+TGG - chr7_3:64530014-64530033 Msa1116740:CDS 70.0%
CGATGGGGCCAACGGGGAAC+TGG + chr7_3:64530025-64530044 None:intergenic 70.0%
AGCGAGCGATGGGGCCAACG+GGG + chr7_3:64530031-64530050 None:intergenic 70.0%
GCCGGTCTCCAGTTCCCCGT+TGG - chr7_3:64530014-64530033 Msa1116740:CDS 70.0%
CGATGGGGCCAACGGGGAAC+TGG + chr7_3:64530025-64530044 None:intergenic 70.0%
AGCGAGCGATGGGGCCAACG+GGG + chr7_3:64530031-64530050 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 64529421 64530627 64529421 ID=Msa1116740;Name=Msa1116740
chr7_3 mRNA 64529421 64530627 64529421 ID=Msa1116740-mRNA-1;Parent=Msa1116740;Name=Msa1116740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=509|1|1|1|1|1|2|169|146
chr7_3 exon 64529421 64529823 64529421 ID=Msa1116740-mRNA-1:exon:15276;Parent=Msa1116740-mRNA-1
chr7_3 exon 64529912 64530627 64529912 ID=Msa1116740-mRNA-1:exon:15275;Parent=Msa1116740-mRNA-1
chr7_3 five_prime_UTR 64530119 64530627 64530119 ID=Msa1116740-mRNA-1:five_prime_utr;Parent=Msa1116740-mRNA-1
chr7_3 CDS 64529912 64530118 64529912 ID=Msa1116740-mRNA-1:cds;Parent=Msa1116740-mRNA-1
chr7_3 CDS 64529590 64529823 64529590 ID=Msa1116740-mRNA-1:cds;Parent=Msa1116740-mRNA-1
chr7_3 three_prime_UTR 64529421 64529589 64529421 ID=Msa1116740-mRNA-1:three_prime_utr;Parent=Msa1116740-mRNA-1
Gene Sequence

>Msa1116740

ATGGCTTCAGATGCAACAGCAACAACCAAGAAAGGTGGAAGGGGCAAACCCAAAACCACCAAGTCCGTTTCCAGATCAAGCAAAGCCGGTCTCCAGTTCCCCGTTGGCCCCATCGCTCGCTTCCTCAAAGCAGGTCGTTATTCTCAACGTGTTGGATATGGTTCCCCTGTTTACCTCTCCGCCGTTCTTGAATACCTCTGCGCCGAGGTTTTGGAATTGGCTGGTAATGCTGCAAGGGATAACAAGAAGACAAGGATTGTACCAAGGCACCTTCAACTAGCTGTGAGGAACGATGAAGAATTGAGCAAATTGCTGGGACATGTGACTATTGCTAATGGTGGTGTTTTGCCTAACATAACCAGACTTTGTTGCCAAAGAAGGTGGCTGGAAAGAAGGGAGAAATTGGATCTGTTAGTCAGGAGTTTTAGGGGTTTAATGTAG

Protein sequence

>Msa1116740

MASDATATTKKGGRGKPKTTKSVSRSSKAGLQFPVGPIARFLKAGRYSQRVGYGSPVYLSAVLEYLCAEVLELAGNAARDNKKTRIVPRHLQLAVRNDEELSKLLGHVTIANGGVLPNITRLCCQRRWLERREKLDLLVRSFRGLM*